Fri Aug 4 00:12:43 UTC 2023 I: starting to build libpwiz/bullseye/amd64 on jenkins on '2023-08-04 00:12' Fri Aug 4 00:12:43 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_11/4403/console.log Fri Aug 4 00:12:43 UTC 2023 I: Downloading source for bullseye/libpwiz=3.0.18342-4 --2023-08-04 00:12:46-- http://cdn-fastly.deb.debian.org/debian/pool/main/libp/libpwiz/libpwiz_3.0.18342-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2597 (2.5K) [text/prs.lines.tag] Saving to: ‘libpwiz_3.0.18342-4.dsc’ 0K .. 100% 226M=0s 2023-08-04 00:12:46 (226 MB/s) - ‘libpwiz_3.0.18342-4.dsc’ saved [2597/2597] Fri Aug 4 00:12:46 UTC 2023 I: libpwiz_3.0.18342-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libpwiz Binary: libpwiz-dev, libpwiz3, libpwiz-tools, libpwiz-doc Architecture: any all Version: 3.0.18342-4 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: http://proteowizard.sourceforge.net/downloads.shtml Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/libpwiz Vcs-Git: https://salsa.debian.org/debichem-team/libpwiz.git Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev Package-List: libpwiz-dev deb libdevel optional arch=any libpwiz-doc deb doc optional arch=all libpwiz-tools deb science optional arch=any libpwiz3 deb libs optional arch=any Checksums-Sha1: d653a9eefc8b97ba6c2a0a57ef2235dab10d7e7d 3196944 libpwiz_3.0.18342.orig.tar.gz 5fc4abb664c66d936c4b3040a458968db4046da4 20004 libpwiz_3.0.18342-4.debian.tar.xz Checksums-Sha256: c43f94529fd4de8e6928befbd522308a6a965fef8970e6bc84613aa0a1338c98 3196944 libpwiz_3.0.18342.orig.tar.gz b1a7919fcc47ff7e5ef4a55fd73406d2bb9d74247e109ddd7be1ec74d159de9c 20004 libpwiz_3.0.18342-4.debian.tar.xz Files: 7b23d6a4f20bc577f23fa74880729e2d 3196944 libpwiz_3.0.18342.orig.tar.gz 6ddd0441eed17f734b277a667d670e6a 20004 libpwiz_3.0.18342-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIyBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAl9x8egACgkQQatITXaU z0LtJA/4+Gnjmw7VUX+sBaJ0zwdXP4VvjsocTatVDp5qXNNXV7VFbxc9SZ8FM70k lL68u3LLosD2ADWzJjDvZZompiWWhiVN/qID8umkwbOte8GheHG3fBDBkwT6EdfS +koPrJP7mx6D5FbneIn81oP5uiKGVMo/KEEVM1pXOXaWe/X9+MQZxOe68qR3JocG EyIvKvcwbfETQkHoCfkaIwiZ8U/PZYvPqt0lXxOo0oYVKFS3/frA+YCvJk0/Kn8o 13jp1cEWBKhwPMX3ZppVvUV63pAS6FHJovFs3egt4U0JMjX9uLWbFVlBJ3Y0UUXx Vi1iC/AvCweGBMevWdClitWK5kKR1wkgVup6QpjrrUV4htzH48Xp2rEHN24a6CLc lW2NxdpPc+hPBGKjqWPDU5yg8/sOftUk6VGGCxankcYW6D+/W6N23IXyjQmsLuJ3 OnekvsrGaHBKR1f429RjBxZdeBF8V1B6W5zFZhWgby4mIgiv7ydbdq9qRsp8QMJa fR71uhR+9fqvHSkPL+QEiM0Qnv1kKPKZSJgXCQEytG/JyI/H+/nLDgV6Xjq6fJuO +q44lRpStbbTMiscph9mPwSoSYogt1K/FZkFfLdiYvv7TxepFPwvl5wGLE8cAgte 7425h/xUtTbNvbLMLrVTFUjEkpIGYS0S9XA+GUN9FfyBUG3w9g== =Ltwo -----END PGP SIGNATURE----- Fri Aug 4 00:12:46 UTC 2023 I: Checking whether the package is not for us Fri Aug 4 00:12:46 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Aug 4 00:12:46 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Aug 4 04:04:24 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 3 12:12:50 -12 2023 I: pbuilder-time-stamp: 1691107970 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpwiz_3.0.18342-4.dsc] I: copying [./libpwiz_3.0.18342.orig.tar.gz] I: copying [./libpwiz_3.0.18342-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.tp4BBo8D/trustedkeys.kbx': General error gpgv: Signature made Mon Sep 28 02:23:36 2020 -12 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpwiz_3.0.18342-4.dsc dpkg-source: info: extracting libpwiz in libpwiz-3.0.18342 dpkg-source: info: unpacking libpwiz_3.0.18342.orig.tar.gz dpkg-source: info: unpacking libpwiz_3.0.18342-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-boost-fail-cast-tribool-to-bool-force-it.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3416081/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e4aded1e04c748cc8dba42786789c6ae' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3416081' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XSNfAJOX/pbuilderrc_ui6b --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XSNfAJOX/b1 --logfile b1/build.log libpwiz_3.0.18342-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3416081/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), chrpath (>= 0.13), libboost-tools-dev, doxygen (>= 1.8.1.2), docbook-to-man, libboost-program-options-dev (>= 1.62.0), libboost-date-time-dev (>= 1.62.0), libboost-iostreams-dev (>= 1.62.0), libboost-regex-dev (>= 1.62.0), libboost-filesystem-dev (>= 1.62.0), libboost-thread-dev (>= 1.62.0), libboost-system-dev (>= 1.62.0), libboost-chrono-dev (>= 1.62.0), libboost-dev (>= 1.62.0), libfftw3-dev (>= 3.3.2), libgd-dev, libjs-jquery, libeigen3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on chrpath (>= 0.13); however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libboost-tools-dev; however: Package libboost-tools-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen (>= 1.8.1.2); however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on docbook-to-man; however: Package docbook-to-man is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev (>= 1.62.0); however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev (>= 1.62.0); however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev (>= 1.62.0); however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev (>= 1.62.0); however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev (>= 1.62.0); however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev (>= 1.62.0); however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev (>= 1.62.0); however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev (>= 1.62.0); however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.62.0); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev (>= 3.3.2); however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgd-dev; however: Package libgd-dev is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook{a} docbook-to-man{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-tools-dev{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libclang-cpp11{a} libclang1-11{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libedit2{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libfreetype6-dev{a} libgd-dev{a} libgd3{a} libglib2.0-0{a} libice-dev{a} libice6{a} libicu-dev{a} libicu67{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libllvm11{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libosp5{a} libpipeline1{a} libpng-dev{a} libpng16-16{a} libpthread-stubs0-dev{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libsub-override-perl{a} libtiff-dev{a} libtiff5{a} libtiffxx5{a} libtool{a} libuchardet0{a} libvpx-dev{a} libvpx6{a} libwebp6{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxml2{a} libxpm-dev{a} libxpm4{a} libxt-dev{a} libxt6{a} libz3-4{a} m4{a} man-db{a} opensp{a} pkg-config{a} po-debconf{a} sensible-utils{a} sgml-base{a} sgml-data{a} ucf{a} uuid-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libpng-tools lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 144 newly installed, 0 to remove and 0 not upgraded. Need to get 112 MB of archives. After unpacking 594 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 sgml-data all 2.0.11+nmu1 [179 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 docbook all 4.5-6 [129 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libosp5 amd64 1.5.2-13+b2 [934 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 opensp amd64 1.5.2-13+b2 [421 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 docbook-to-man amd64 1:2.0.0-45 [77.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libclang-cpp11 amd64 1:11.0.1-2 [9632 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libclang1-11 amd64 1:11.0.1-2 [5521 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 doxygen amd64 1.9.1-1 [4232 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74.0 amd64 1.74.0-9 [244 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74-dev amd64 1.74.0-9 [245 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74.0 amd64 1.74.0-9 [252 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74-dev amd64 1.74.0-9 [260 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono-dev amd64 1.74.0.3 [4960 B] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74.0 amd64 1.74.0-9 [241 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74.0 amd64 1.74.0-9 [340 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74-dev amd64 1.74.0-9 [383 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74-dev amd64 1.74.0-9 [250 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time-dev amd64 1.74.0.3 [4332 B] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74.0 amd64 1.74.0-9 [241 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74-dev amd64 1.74.0-9 [243 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-9 [304 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74.0 amd64 1.74.0-9 [516 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74-dev amd64 1.74.0-9 [588 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74-dev amd64 1.74.0-9 [273 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74-dev amd64 1.74.0-9 [386 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libboost-regex-dev amd64 1.74.0.3 [4600 B] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libboost-system-dev amd64 1.74.0.3 [4468 B] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74.0 amd64 1.74.0-9 [279 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74-dev amd64 1.74.0-9 [290 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-tools-dev amd64 1.74.0-9 [1465 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libboost-tools-dev amd64 1.74.0.3 [4508 B] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libbrotli-dev amd64 1.0.9-2+b2 [288 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 libdeflate-dev amd64 1.7-1 [46.9 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libeigen3-dev all 3.3.9-2 [858 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libfftw3-long3 amd64 3.3.8-2 [319 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 libfftw3-quad3 amd64 3.3.8-2 [558 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 libfftw3-bin amd64 3.3.8-2 [50.7 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libfftw3-dev amd64 3.3.8-2 [2106 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libpng-dev amd64 1.6.37-3 [298 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libfreetype-dev amd64 2.10.4+dfsg-1+deb11u1 [571 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libfreetype6-dev amd64 2.10.4+dfsg-1+deb11u1 [82.6 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 uuid-dev amd64 2.36.1-8+deb11u1 [99.4 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libfontconfig-dev amd64 2.13.1-4.2 [368 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u4 [290 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1~deb11u1 [49.6 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 127 http://deb.debian.org/debian bullseye/main amd64 libxcb1-dev amd64 1.14-3 [176 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 libx11-dev amd64 2:1.7.2-1 [841 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 libxpm-dev amd64 1:3.5.12-1.1~deb11u1 [105 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 libice-dev amd64 2:1.0.10-1 [67.1 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 libxt-dev amd64 1:1.2.0-1 [407 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 libvpx6 amd64 1.9.0-1 [829 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 libvpx-dev amd64 1.9.0-1 [965 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 libjbig-dev amd64 2.1-3.1+b2 [30.5 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2.1~deb11u1 [229 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 libtiffxx5 amd64 4.2.0-1+deb11u4 [129 kB] Get: 142 http://deb.debian.org/debian bullseye/main amd64 libtiff-dev amd64 4.2.0-1+deb11u4 [416 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 libgd-dev amd64 2.3.0-2 [274 kB] Get: 144 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Fetched 112 MB in 10s (11.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../005-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../008-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../012-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package chrpath. Preparing to unpack .../018-chrpath_0.16-2+b1_amd64.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... 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Setting up libx11-dev:amd64 (2:1.7.2-1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libfreetype-dev:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libclang-cpp11 (1:11.0.1-2) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0-9) ... Setting up doxygen (1.9.1-1) ... Setting up libxpm-dev:amd64 (1:3.5.12-1.1~deb11u1) ... Setting up libboost-date-time-dev:amd64 (1.74.0.3) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0-9) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up debhelper (13.3.4) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Setting up libfreetype6-dev:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libxt-dev:amd64 (1:1.2.0-1) ... Setting up libgd3:amd64 (2.3.0-2) ... 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I: Building the package I: Running cd /build/libpwiz-3.0.18342/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwiz_3.0.18342-4_source.changes dpkg-buildpackage: info: source package libpwiz dpkg-buildpackage: info: source version 3.0.18342-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: buildinfo=+all reproducible=+all,-fixfilepath parallel=15 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the clean target dh_testdir dh_testroot rm -f debian/msconvert.1 rm -f debian/idconvert.1 rm -f debian/mscat.1 rm -f debian/txt2mzml.1 rm -f autools/conf.log autools/config.status rm -rf /build/libpwiz-3.0.18342/debian/build rm -rf debian/includes rm -rf doc/dox/html rm -f configure-stamp rm -f build-arch-stamp rm -f build-indep-stamp dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars debian/libpwiz-doc.substvars debian/files rm -fr -- debian/libpwiz-dev/ debian/tmp/ debian/libpwiz3/ debian/libpwiz-tools/ debian/libpwiz-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: buildinfo=+all reproducible=+all,-fixfilepath parallel=15 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /build/libpwiz-3.0.18342/debian/build cp -rpf autotools libraries pwiz pwiz_tools /build/libpwiz-3.0.18342/debian/build echo "BOOST_LDPATH = /usr/lib/x86_64-linux-gnu" > /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp cat /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am >> /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen"|' /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0"|' /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp mv /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am rm -f /build/libpwiz-3.0.18342/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /build/libpwiz-3.0.18342/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr --build=x86_64-linux-gnu --host=x86_64-linux-gnu libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... 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(cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... 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(cached) yes checking boost/iostreams/device/file_descriptor.hpp usability... yes checking boost/iostreams/device/file_descriptor.hpp presence... yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking boost/date_time/posix_time/posix_time.hpp usability... yes checking boost/date_time/posix_time/posix_time.hpp presence... yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking boost/program_options.hpp usability... yes checking boost/program_options.hpp presence... yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... 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(cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /build/libpwiz-3.0.18342/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/x86_64-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/build/libpwiz-3.0.18342/debian/build /usr/bin/make install make[1]: Entering directory '/build/libpwiz-3.0.18342/debian/build' depbase=`echo pwiz_tools/examples/txt2mzml.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/txt2mzml.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/txt2mzml.o pwiz_tools/examples/txt2mzml.cpp &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo libraries/boost_aux/libs/nowide/src/iostream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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libraries/boost_aux/libs/nowide/src/iostream.lo libraries/boost_aux/libs/nowide/src/iostream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -fPIC -DPIC -o libraries/boost_aux/libs/nowide/src/.libs/iostream.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/boost_aux/libs/nowide/src/iostream.lo -MD -MP -MF libraries/boost_aux/libs/nowide/src/.deps/iostream.Tpo -c libraries/boost_aux/libs/nowide/src/iostream.cpp -o libraries/boost_aux/libs/nowide/src/iostream.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/erf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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depbase=`echo pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo -MD -MP -MF pwiz/data/vendor_readers/UNIFI/.deps/SpectrumList_UNIFI.Tpo -c pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UNIFI/.libs/SpectrumList_UNIFI.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/minimxml/XMLWriter.lo -MD -MP -MF pwiz/utility/minimxml/.deps/XMLWriter.Tpo -c pwiz/utility/minimxml/XMLWriter.cpp -o pwiz/utility/minimxml/XMLWriter.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/data/tradata/DefaultReaderList.lo pwiz/data/tradata/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxDebugWriter.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxDebugWriter.Tpo -c pwiz/analysis/demux/DemuxDebugWriter.cpp -o pwiz/analysis/demux/DemuxDebugWriter.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/BinaryDataEncoder.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" 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pwiz/data/msdata/.libs/BinaryDataEncoder.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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"/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_3D.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_3D.lo pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_3D.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_3D.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_3D.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_3D.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_3D.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_3D.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_3D.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionSlice.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionSlice.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSlice.Tpo -c pwiz/analysis/passive/RegionSlice.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionSlice.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionSlice.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSlice.Tpo -c pwiz/analysis/passive/RegionSlice.cpp -o pwiz/analysis/passive/RegionSlice.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideIDMap.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peptideid/PeptideIDMap.lo pwiz/analysis/peptideid/PeptideIDMap.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideIDMap.Tpo -c pwiz/analysis/peptideid/PeptideIDMap.cpp -fPIC -DPIC -o pwiz/analysis/peptideid/.libs/PeptideIDMap.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideIDMap.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideIDMap.Tpo -c pwiz/analysis/peptideid/PeptideIDMap.cpp -o pwiz/analysis/peptideid/PeptideIDMap.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:30, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:27: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:62:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 62 | PWIZ_API_DECL auto_ptr TruncatedLorentzianEstimator::create() | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In static member function 'static std::auto_ptr pwiz::frequency::TruncatedLorentzianEstimator::create()': pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:64:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 64 | return auto_ptr(new TruncatedLorentzianEstimatorImpl); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp: In member function 'virtual pwiz::frequency::TruncatedLorentzianParameters pwiz::frequency::TruncatedLorentzianEstimatorImpl::iteratedEstimate(const pwiz::data::FrequencyData&, const pwiz::frequency::TruncatedLorentzianParameters&, int) const': pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:146:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 146 | auto_ptr pe = | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzian.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:29, from pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianEstimator.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp -o pwiz/analysis/frequency/TruncatedLorentzianEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorRecalculatorDefault.Tpo -c pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.cpp -o pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o >/dev/null 2>&1 depbase=`echo pwiz/utility/proteome/IPIFASTADatabase.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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"/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/utility/proteome/IPIFASTADatabase.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -fPIC -DPIC -o pwiz/utility/proteome/.libs/IPIFASTADatabase.o In file included from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: pwiz/utility/proteome/IPIFASTADatabase.hpp:72:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 72 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from pwiz/utility/proteome/IPIFASTADatabase.hpp:29, from pwiz/utility/proteome/IPIFASTADatabase.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/proteome/IPIFASTADatabase.lo -MD -MP -MF pwiz/utility/proteome/.deps/IPIFASTADatabase.Tpo -c pwiz/utility/proteome/IPIFASTADatabase.cpp -o pwiz/utility/proteome/IPIFASTADatabase.o >/dev/null 2>&1 depbase=`echo pwiz/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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"/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/common/MSDataAnalyzerApplication.lo -MD -MP -MF pwiz_tools/common/.deps/MSDataAnalyzerApplication.Tpo -c pwiz_tools/common/MSDataAnalyzerApplication.cpp -o pwiz_tools/common/MSDataAnalyzerApplication.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/CubicHermiteSpline.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ScanSummer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ScanSummer.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 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-DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureModeler.lo pwiz/analysis/peakdetect/FeatureModeler.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureModeler.o In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/peakdetect/FeatureModeler.cpp:28: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/misc/TabReader.hpp:29, from ./pwiz/utility/misc/MSIHandler.hpp:28, from ./pwiz/data/misc/PeakData.hpp:29, from pwiz/analysis/peakdetect/MZRTField.hpp:29, from pwiz/analysis/peakdetect/FeatureModeler.hpp:28, from pwiz/analysis/peakdetect/FeatureModeler.cpp:25: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureModeler.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureModeler.Tpo -c pwiz/analysis/peakdetect/FeatureModeler.cpp -o pwiz/analysis/peakdetect/FeatureModeler.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_MSn.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_MSn.lo pwiz/data/msdata/Serializer_MSn.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MSn.Tpo -c pwiz/data/msdata/Serializer_MSn.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_MSn.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MSn.Tpo -c pwiz/data/msdata/Serializer_MSn.cpp -o pwiz/data/msdata/Serializer_MSn.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/diff_std.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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pwiz/data/common/diff_std.cpp -fPIC -DPIC -o pwiz/data/common/.libs/diff_std.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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-Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/AminoAcid.lo -MD -MP -MF pwiz/data/proteome/.deps/AminoAcid.Tpo -c pwiz/data/proteome/AminoAcid.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/AminoAcid.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/AminoAcid.lo -MD -MP -MF pwiz/data/proteome/.deps/AminoAcid.Tpo -c pwiz/data/proteome/AminoAcid.cpp -o pwiz/data/proteome/AminoAcid.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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pwiz/data/proteome/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/DefaultReaderList.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/DefaultReaderList.lo -MD -MP -MF pwiz/data/proteome/.deps/DefaultReaderList.Tpo -c pwiz/data/proteome/DefaultReaderList.cpp -o pwiz/data/proteome/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peptideid/PeptideID_pepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peptideid/PeptideID_pepXML.lo -MD -MP -MF pwiz/analysis/peptideid/.deps/PeptideID_pepXML.Tpo -c pwiz/analysis/peptideid/PeptideID_pepXML.cpp -o pwiz/analysis/peptideid/PeptideID_pepXML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilterTestData.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilterTestData.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakExtractor.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakExtractor.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakExtractor.Tpo -c pwiz/analysis/peakdetect/PeakExtractor.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakExtractor.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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pwiz/analysis/peakdetect/PeakExtractor.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakExtractor.Tpo -c pwiz/analysis/peakdetect/PeakExtractor.cpp -o pwiz/analysis/peakdetect/PeakExtractor.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/Base64.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/Base64.lo -MD -MP -MF pwiz/utility/misc/.deps/Base64.Tpo -c pwiz/utility/misc/Base64.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/Base64.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/CwtPeakDetector.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/CwtPeakDetector.lo pwiz/analysis/common/CwtPeakDetector.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/CwtPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/CwtPeakDetector.Tpo -c pwiz/analysis/common/CwtPeakDetector.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/CwtPeakDetector.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/CwtPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/CwtPeakDetector.Tpo -c pwiz/analysis/common/CwtPeakDetector.cpp -o pwiz/analysis/common/CwtPeakDetector.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorSimple.lo pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp:26, from pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of 'struct pwiz::analysis::MZRTField': ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: 'pwiz::analysis::MZRTField' has a base 'std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >' whose type uses the anonymous namespace [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of 'struct pwiz::analysis::MZRTField': ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: 'pwiz::analysis::MZRTField' has a base 'std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >' whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorSimple.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorSimple.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorSimple.cpp -o pwiz/analysis/peakdetect/FeatureDetectorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/SHA1.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/SHA1.lo pwiz/utility/misc/SHA1.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/SHA1.lo -MD -MP -MF pwiz/utility/misc/.deps/SHA1.Tpo -c pwiz/utility/misc/SHA1.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/SHA1.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/misc/VendorReaderTestHarness.lo pwiz/utility/misc/VendorReaderTestHarness.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/VendorReaderTestHarness.lo -MD -MP -MF pwiz/utility/misc/.deps/VendorReaderTestHarness.Tpo -c pwiz/utility/misc/VendorReaderTestHarness.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/VendorReaderTestHarness.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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pwiz/utility/misc/.deps/VendorReaderTestHarness.Tpo -c pwiz/utility/misc/VendorReaderTestHarness.cpp -o pwiz/utility/misc/VendorReaderTestHarness.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxSolver.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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pwiz/data/msdata/SpectrumWorkerThreads.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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"/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/TraData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/tradata/TraData.lo pwiz/data/tradata/TraData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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pwiz/data/tradata/.libs/TraData.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/TraData.lo -MD -MP -MF pwiz/data/tradata/.deps/TraData.Tpo -c pwiz/data/tradata/TraData.cpp -o pwiz/data/tradata/TraData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_MSn.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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"/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_MSn.lo pwiz/data/msdata/SpectrumList_MSn.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_MSn.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_MSn.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MSn.Tpo -c pwiz/data/msdata/SpectrumList_MSn.cpp -o pwiz/data/msdata/SpectrumList_MSn.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" 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pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.cpp -o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/MatrixIO.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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-Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/WhittakerSmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/WhittakerSmoother.Tpo -c pwiz/analysis/common/WhittakerSmoother.cpp -o pwiz/analysis/common/WhittakerSmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/OverlapDemultiplexer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/examples.lo -MD -MP -MF pwiz/data/msdata/.deps/examples.Tpo -c pwiz/data/msdata/examples.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/examples.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZWindow.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZWindow.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZWindow.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/PrecursorMaskCodec.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/PrecursorMaskCodec.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/PrecursorMaskCodec.lo pwiz/analysis/demux/PrecursorMaskCodec.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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pwiz/analysis/demux/.libs/PrecursorMaskCodec.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/PrecursorMaskCodec.lo -MD -MP -MF pwiz/analysis/demux/.deps/PrecursorMaskCodec.Tpo -c pwiz/analysis/demux/PrecursorMaskCodec.cpp -o pwiz/analysis/demux/PrecursorMaskCodec.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/Diff.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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pwiz/data/tradata/Diff.cpp -fPIC -DPIC -o pwiz/data/tradata/.libs/Diff.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/Reader_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/Reader_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/ChromatogramList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/ChromatogramList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/ChromatogramList_mzML.Tpo -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/MinimumPepXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/MinimumPepXML.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/MinimumPepXML.lo -MD -MP -MF pwiz/data/misc/.deps/MinimumPepXML.Tpo -c pwiz/data/misc/MinimumPepXML.cpp -o pwiz/data/misc/MinimumPepXML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:29, from pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeEnvelopeEstimator.Tpo -c pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp -o pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/SavitzkyGolaySmoother.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/common/SavitzkyGolaySmoother.lo pwiz/analysis/common/SavitzkyGolaySmoother.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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pwiz/analysis/common/SavitzkyGolaySmoother.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/SavitzkyGolaySmoother.lo -MD -MP -MF pwiz/analysis/common/.deps/SavitzkyGolaySmoother.Tpo -c pwiz/analysis/common/SavitzkyGolaySmoother.cpp -o pwiz/analysis/common/SavitzkyGolaySmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 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-I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_PrecursorRecalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/proteome_processing/ProteinListFactory.lo pwiz/analysis/proteome_processing/ProteinListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -fPIC -DPIC -o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinListFactory.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinListFactory.Tpo -c pwiz/analysis/proteome_processing/ProteinListFactory.cpp -o pwiz/analysis/proteome_processing/ProteinListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Stats.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/math/Stats.lo pwiz/utility/math/Stats.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Stats.o In file included from pwiz/utility/math/Stats.cpp:26: pwiz/utility/math/Stats.hpp:57:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 57 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/numeric/ublas/fwd.hpp:18, from /usr/include/boost/numeric/ublas/detail/config.hpp:299, from /usr/include/boost/numeric/ublas/exception.hpp:19, from /usr/include/boost/numeric/ublas/storage.hpp:25, from /usr/include/boost/numeric/ublas/vector.hpp:21, from pwiz/utility/math/Stats.hpp:29, from pwiz/utility/math/Stats.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Stats.lo -MD -MP -MF pwiz/utility/math/.deps/Stats.Tpo -c pwiz/utility/math/Stats.cpp -o pwiz/utility/math/Stats.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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pwiz/data/identdata/.libs/Serializer_Text.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_Text.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_Text.Tpo -c pwiz/data/identdata/Serializer_Text.cpp -o pwiz/data/identdata/Serializer_Text.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RegionTIC.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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pwiz/analysis/passive/.deps/RegionTIC.Tpo -c pwiz/analysis/passive/RegionTIC.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionTIC.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Serializer_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Serializer_FASTA.Tpo -c pwiz/data/proteome/Serializer_FASTA.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Serializer_FASTA.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Serializer_FASTA.lo -MD -MP -MF pwiz/data/proteome/.deps/Serializer_FASTA.Tpo -c pwiz/data/proteome/Serializer_FASTA.cpp -o pwiz/data/proteome/Serializer_FASTA.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Modification.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Modification.lo pwiz/data/proteome/Modification.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Modification.o pwiz/data/proteome/Modification.cpp:89:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 89 | auto_ptr formula_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/data/proteome/Peptide.hpp:29, from pwiz/data/proteome/Modification.hpp:30, from pwiz/data/proteome/Modification.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Modification.lo -MD -MP -MF pwiz/data/proteome/.deps/Modification.Tpo -c pwiz/data/proteome/Modification.cpp -o pwiz/data/proteome/Modification.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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-DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeStateCalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_ChargeStateCalculator.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/ThresholdFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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pwiz/analysis/spectrum_processing/ThresholdFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/ThresholdFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/ThresholdFilter.Tpo -c pwiz/analysis/spectrum_processing/ThresholdFilter.cpp -o pwiz/analysis/spectrum_processing/ThresholdFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/misc/FrequencyDataTestData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 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pwiz/data/misc/.libs/FrequencyDataTestData.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 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-Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyDataTestData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyDataTestData.Tpo -c pwiz/data/misc/FrequencyDataTestData.cpp -o pwiz/data/misc/FrequencyDataTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_MGF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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pwiz/data/msdata/SpectrumList_MGF.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_MGF.Tpo -c pwiz/data/msdata/SpectrumList_MGF.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_MGF.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteinListCache.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteinListCache.Tpo -c pwiz/data/proteome/ProteinListCache.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/ProteinListCache.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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pwiz/data/proteome/ProteinListCache.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteinListCache.Tpo -c pwiz/data/proteome/ProteinListCache.cpp -o pwiz/data/proteome/ProteinListCache.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/Noise.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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-Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/Noise.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/Noise.Tpo -c pwiz/analysis/peakdetect/Noise.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/Noise.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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pwiz/utility/chemistry/ChemistryData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Index_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Index_mzML.Tpo -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/ParameterEstimator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/ParameterEstimator.lo pwiz/analysis/frequency/ParameterEstimator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/ParameterEstimator.o In file included from pwiz/analysis/frequency/ParameterEstimator.cpp:24: pwiz/analysis/frequency/ParameterEstimator.hpp:49:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 49 | static std::auto_ptr create(const Function& function, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp:65:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 65 | auto_ptr ParameterEstimator::create(const Function& function, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/ParameterEstimator.cpp: In static member function 'static std::auto_ptr pwiz::frequency::ParameterEstimator::create(const Function&, const Data&, const Parameters&)': pwiz/analysis/frequency/ParameterEstimator.cpp:69:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | return auto_ptr(new ParameterEstimatorImpl(function, data, initialEstimate)); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from pwiz/analysis/frequency/ParametrizedFunction.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.hpp:29, from pwiz/analysis/frequency/ParameterEstimator.cpp:24: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/ParameterEstimator.lo -MD -MP -MF pwiz/analysis/frequency/.deps/ParameterEstimator.Tpo -c pwiz/analysis/frequency/ParameterEstimator.cpp -o pwiz/analysis/frequency/ParameterEstimator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorSimple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorSimple.lo pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:45:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 45 | static std::auto_ptr create(Type type = Parabola, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:63:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 63 | PWIZ_API_DECL auto_ptr FrequencyEstimatorSimple::create(Type type, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp: In static member function 'static std::auto_ptr pwiz::frequency::FrequencyEstimatorSimple::create(pwiz::frequency::FrequencyEstimatorSimple::Type, unsigned int)': pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:66:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 66 | return auto_ptr( | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorSimple.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorSimple.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorSimple.cpp -o pwiz/analysis/frequency/FrequencyEstimatorSimple.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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"/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_Filter.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_Filter.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/PepXMLCat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/PepXMLCat.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/PepXMLCat.lo -MD -MP -MF pwiz/analysis/passive/.deps/PepXMLCat.Tpo -c pwiz/analysis/passive/PepXMLCat.cpp -o pwiz/analysis/passive/PepXMLCat.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o In file included from pwiz/analysis/peakdetect/FeatureDetector.hpp:27, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp:28, from pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp:25: pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of 'struct pwiz::analysis::MZRTField': ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: 'pwiz::analysis::MZRTField' has a base 'std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >' whose type uses the anonymous namespace [-Wsubobject-linkage] 94 | struct MZRTField : public std::set< boost::shared_ptr, LessThan_MZRT > | ^~~~~~~~~ pwiz/analysis/peakdetect/MZRTField.hpp: In instantiation of 'struct pwiz::analysis::MZRTField': ./pwiz/analysis/passive/MSDataAnalyzer.hpp:211:26: required from here pwiz/analysis/peakdetect/MZRTField.hpp:94:8: warning: 'pwiz::analysis::MZRTField' has a base 'std::set, pwiz::analysis::{anonymous}::LessThan_MZRT, std::allocator > >' whose type uses the anonymous namespace [-Wsubobject-linkage] libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/FeatureDetectorPeakel.Tpo -c pwiz/analysis/peakdetect/FeatureDetectorPeakel.cpp -o pwiz/analysis/peakdetect/FeatureDetectorPeakel.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2Deisotoper.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MetadataFixer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_MetadataFixer.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_MetadataFixer.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/Reader_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/data/vendor_readers/Waters/Reader_Waters.lo pwiz/data/vendor_readers/Waters/Reader_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 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-DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/Reader_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/Reader_Waters.Tpo -c pwiz/data/vendor_readers/Waters/Reader_Waters.cpp -o pwiz/data/vendor_readers/Waters/Reader_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumInfo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/examples.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/identdata/examples.lo pwiz/data/identdata/examples.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/examples.lo -MD -MP -MF pwiz/data/identdata/.deps/examples.Tpo -c pwiz/data/identdata/examples.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/examples.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/examples.lo -MD -MP -MF pwiz/data/identdata/.deps/examples.Tpo -c pwiz/data/identdata/examples.cpp -o pwiz/data/identdata/examples.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo -MD -MP -MF pwiz/analysis/frequency/.deps/FrequencyEstimatorPhysicalModel.Tpo -c pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o In file included from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:53:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 53 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:27: pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp:43:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 43 | static std::auto_ptr create(); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:60:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 60 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In static member function 'static std::auto_ptr pwiz::frequency::FrequencyEstimatorPhysicalModel::create(const pwiz::frequency::FrequencyEstimatorPhysicalModel::Config&)': pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:63:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 63 | return auto_ptr( | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp: In member function 'virtual pwiz::data::peakdata::Peak FrequencyEstimatorPhysicalModelImpl::estimate(const FrequencyData&, const Peak&) const': pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:100:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 100 | auto_ptr estimator = TruncatedLorentzianEstimator::create(); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/FrequencyEstimator.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp:29, from pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 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pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_SavitzkyGolaySmoother.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_SavitzkyGolaySmoother.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/MSXDemultiplexer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/MSXDemultiplexer.lo -MD -MP -MF pwiz/analysis/demux/.deps/MSXDemultiplexer.Tpo -c pwiz/analysis/demux/MSXDemultiplexer.cpp -o pwiz/analysis/demux/MSXDemultiplexer.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/PrecursorMassFilter.Tpo -c pwiz/analysis/spectrum_processing/PrecursorMassFilter.cpp -o pwiz/analysis/spectrum_processing/PrecursorMassFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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pwiz/utility/misc/SHA1Calculator.cpp -o pwiz/utility/misc/SHA1Calculator.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetector.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MetadataReporter.lo -MD -MP -MF pwiz/analysis/passive/.deps/MetadataReporter.Tpo -c pwiz/analysis/passive/MetadataReporter.cpp -o pwiz/analysis/passive/MetadataReporter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumListFactory.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumListFactory.Tpo -c pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumListFactory.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumListFactory.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumListFactory.Tpo -c pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp -o pwiz/analysis/spectrum_processing/SpectrumListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/proteome_processing/ProteinList_Filter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/proteome_processing/ProteinList_Filter.lo -MD -MP -MF pwiz/analysis/proteome_processing/.deps/ProteinList_Filter.Tpo -c pwiz/analysis/proteome_processing/ProteinList_Filter.cpp -o pwiz/analysis/proteome_processing/ProteinList_Filter.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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"/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/SpectrumList_ABI.Tpo -c pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/ABI/.libs/SpectrumList_ABI.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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pwiz/analysis/passive/MSDataCache.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MSDataCache.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataCache.Tpo -c pwiz/analysis/passive/MSDataCache.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/MSDataCache.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/analysis/passive/MSDataCache.cpp -o pwiz/analysis/passive/MSDataCache.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/SpectrumTable.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumTable.Tpo -c pwiz/analysis/passive/SpectrumTable.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/SpectrumTable.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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pwiz/analysis/passive/SpectrumTable.lo -MD -MP -MF pwiz/analysis/passive/.deps/SpectrumTable.Tpo -c pwiz/analysis/passive/SpectrumTable.cpp -o pwiz/analysis/passive/SpectrumTable.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/Reader_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UIMF/.libs/Reader_UIMF.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 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pwiz/analysis/peakdetect/PeakFinder.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFinder.lo pwiz/analysis/peakdetect/PeakFinder.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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"-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFinder.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFinder.Tpo -c pwiz/analysis/peakdetect/PeakFinder.cpp -o pwiz/analysis/peakdetect/PeakFinder.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/examples.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/MSData.lo -MD -MP -MF pwiz/data/msdata/.deps/MSData.Tpo -c pwiz/data/msdata/MSData.cpp -o pwiz/data/msdata/MSData.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/IsotopeCalculator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeCalculator.lo pwiz/utility/chemistry/IsotopeCalculator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeCalculator.o In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeCalculator.hpp:29, from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/utility/chemistry/IsotopeCalculator.cpp:27: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 50 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeCalculator.hpp:29, from pwiz/utility/chemistry/IsotopeCalculator.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeCalculator.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeCalculator.Tpo -c pwiz/utility/chemistry/IsotopeCalculator.cpp -o pwiz/utility/chemistry/IsotopeCalculator.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ExtendedReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/ExtendedReaderList.lo pwiz/data/vendor_readers/ExtendedReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF pwiz/data/vendor_readers/.deps/ExtendedReaderList.Tpo -c pwiz/data/vendor_readers/ExtendedReaderList.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/.libs/ExtendedReaderList.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ExtendedReaderList.lo -MD -MP -MF pwiz/data/vendor_readers/.deps/ExtendedReaderList.Tpo -c pwiz/data/vendor_readers/ExtendedReaderList.cpp -o pwiz/data/vendor_readers/ExtendedReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorNaive.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorNaive.lo pwiz/analysis/frequency/PeakDetectorNaive.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorNaive.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: pwiz/analysis/frequency/PeakDetectorNaive.hpp:50:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 50 | static std::auto_ptr create(double noiseFactor = 5, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp:56:15: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 56 | PWIZ_API_DECL auto_ptr PeakDetectorNaive::create(double noiseFactor, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorNaive.cpp: In static member function 'static std::auto_ptr pwiz::frequency::PeakDetectorNaive::create(double, unsigned int)': pwiz/analysis/frequency/PeakDetectorNaive.cpp:59:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 59 | return auto_ptr(new PeakDetectorNaiveImpl(noiseFactor, detectionRadius)); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.hpp:29, from pwiz/analysis/frequency/PeakDetectorNaive.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorNaive.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorNaive.Tpo -c pwiz/analysis/frequency/PeakDetectorNaive.cpp -o pwiz/analysis/frequency/PeakDetectorNaive.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Reader.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Reader.lo pwiz/data/proteome/Reader.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Reader.lo -MD -MP -MF pwiz/data/proteome/.deps/Reader.Tpo -c pwiz/data/proteome/Reader.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Reader.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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depbase=`echo pwiz/data/misc/FrequencyData.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/misc/FrequencyData.lo pwiz/data/misc/FrequencyData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/misc/FrequencyData.lo -MD -MP -MF pwiz/data/misc/.deps/FrequencyData.Tpo -c pwiz/data/misc/FrequencyData.cpp -fPIC -DPIC -o pwiz/data/misc/.libs/FrequencyData.o In file included from pwiz/data/misc/FrequencyData.cpp:26: pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from pwiz/data/misc/SampleDatum.hpp:30, from pwiz/data/misc/FrequencyData.hpp:29, from pwiz/data/misc/FrequencyData.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/BinaryData.lo -MD -MP -MF pwiz/utility/misc/.deps/BinaryData.Tpo -c pwiz/utility/misc/BinaryData.cpp -fPIC -DPIC -o pwiz/utility/misc/.libs/BinaryData.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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pwiz/utility/misc/.deps/BinaryData.Tpo -c pwiz/utility/misc/BinaryData.cpp -o pwiz/utility/misc/BinaryData.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Serializer_protXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 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-DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_protXML.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_protXML.Tpo -c pwiz/data/identdata/Serializer_protXML.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/Serializer_protXML.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/Serializer_protXML.lo -MD -MP -MF pwiz/data/identdata/.deps/Serializer_protXML.Tpo -c pwiz/data/identdata/Serializer_protXML.cpp -o pwiz/data/identdata/Serializer_protXML.o >/dev/null 2>&1 depbase=`echo pwiz/utility/chemistry/MZTolerance.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/utility/chemistry/MZTolerance.lo pwiz/utility/chemistry/MZTolerance.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/MZTolerance.lo -MD -MP -MF pwiz/utility/chemistry/.deps/MZTolerance.Tpo -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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"/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/ChromatogramList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Agilent/.libs/ChromatogramList_Agilent.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/MS2NoiseFilter.Tpo -c pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp -o pwiz/analysis/spectrum_processing/MS2NoiseFilter.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/common/Unimod.lo -MD -MP -MF pwiz/data/common/.deps/Unimod.Tpo -c pwiz/data/common/Unimod.cpp -fPIC -DPIC -o pwiz/data/common/.libs/Unimod.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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pwiz/data/common/Unimod.cpp -o pwiz/data/common/Unimod.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/Version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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pwiz/data/proteome/.deps/Version.Tpo -c pwiz/data/proteome/Version.cpp -o pwiz/data/proteome/Version.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/IO.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict 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"-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/IO.lo -MD -MP -MF pwiz/data/identdata/.deps/IO.Tpo -c pwiz/data/identdata/IO.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/IO.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-MD -MP -MF pwiz/data/identdata/.deps/IO.Tpo -c pwiz/data/identdata/IO.cpp -o pwiz/data/identdata/IO.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_mzXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 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pwiz/data/identdata/DefaultReaderList.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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-DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/DefaultReaderList.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/identdata/DefaultReaderList.lo -MD -MP -MF pwiz/data/identdata/.deps/DefaultReaderList.Tpo -c pwiz/data/identdata/DefaultReaderList.cpp -o pwiz/data/identdata/DefaultReaderList.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilter.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o In file included from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 109 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:116:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 116 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp: In static member function 'static std::auto_ptr pwiz::frequency::PeakDetectorMatchedFilter::create(const pwiz::frequency::PeakDetectorMatchedFilter::Config&)': pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:119:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 119 | return auto_ptr(new PeakDetectorMatchedFilterImpl(config)); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from ./pwiz/data/misc/SampleDatum.hpp:30, from ./pwiz/data/misc/FrequencyData.hpp:29, from pwiz/analysis/frequency/PeakDetector.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo -MD -MP -MF pwiz/analysis/frequency/.deps/PeakDetectorMatchedFilter.Tpo -c pwiz/analysis/frequency/PeakDetectorMatchedFilter.cpp -o pwiz/analysis/frequency/PeakDetectorMatchedFilter.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/ExtraZeroSamplesFilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ 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-D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/SpectrumList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/utility/minimxml/SAXParser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_IonMobility.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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-DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Demux.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -fPIC -DPIC -o pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp: In static member function 'static const string& pwiz::analysis::SpectrumList_Demux::Params::optimizationToString(pwiz::analysis::SpectrumList_Demux::Params::Optimization)': pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:96: warning: function may return address of local variable [-Wreturn-local-addr] 200 | return enumToString(opt, kOptimizationStrings); | ^ pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:200:96: note: declared here 200 | return enumToString(opt, kOptimizationStrings); | ^ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo -MD -MP -MF pwiz/analysis/spectrum_processing/.deps/SpectrumList_Demux.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_Demux.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/Serializer_mzML.lo pwiz/data/msdata/Serializer_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_mzML.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/Serializer_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_mzML.Tpo -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/Pep2MzIdent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionSIC.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/RegionSIC.lo pwiz/analysis/passive/RegionSIC.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionSIC.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSIC.Tpo -c pwiz/analysis/passive/RegionSIC.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/RegionSIC.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/RegionSIC.lo -MD -MP -MF pwiz/analysis/passive/.deps/RegionSIC.Tpo -c pwiz/analysis/passive/RegionSIC.cpp -o pwiz/analysis/passive/RegionSIC.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 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"/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/RunSummary.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 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pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo -MD -MP -MF pwiz/data/vendor_readers/Shimadzu/.deps/ChromatogramList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Shimadzu/.libs/ChromatogramList_Shimadzu.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/data/vendor_readers/Shimadzu/.deps/ChromatogramList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp -o pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/common/ZeroSampleFiller.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 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libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 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pwiz/utility/misc/MSIHandler.lo pwiz/utility/misc/MSIHandler.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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pwiz/data/msdata/LegacyAdapter.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/LegacyAdapter.lo pwiz/data/msdata/LegacyAdapter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/LocalMaximumPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/LocalMaximumPeakDetector.Tpo -c pwiz/analysis/common/LocalMaximumPeakDetector.cpp -fPIC -DPIC -o pwiz/analysis/common/.libs/LocalMaximumPeakDetector.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/common/LocalMaximumPeakDetector.lo -MD -MP -MF pwiz/analysis/common/.deps/LocalMaximumPeakDetector.Tpo -c pwiz/analysis/common/LocalMaximumPeakDetector.cpp -o pwiz/analysis/common/LocalMaximumPeakDetector.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/SpectrumList_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp -o pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/passive/MSDataAnalyzer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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"/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/passive/MSDataAnalyzer.lo pwiz/analysis/passive/MSDataAnalyzer.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-c pwiz/analysis/passive/MSDataAnalyzer.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/MSDataAnalyzer.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/MSDataAnalyzer.lo -MD -MP -MF pwiz/analysis/passive/.deps/MSDataAnalyzer.Tpo -c pwiz/analysis/passive/MSDataAnalyzer.cpp -o pwiz/analysis/passive/MSDataAnalyzer.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" 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pwiz/analysis/spectrum_processing/.deps/SpectrumList_MZRefiner.Tpo -c pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp -o pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_XICGenerator.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_XICGenerator.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_XICGenerator.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.o >/dev/null 2>&1 depbase=`echo pwiz/utility/math/Parabola.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Parabola.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/math/Parabola.lo pwiz/utility/math/Parabola.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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pwiz/utility/math/Parabola.lo -MD -MP -MF pwiz/utility/math/.deps/Parabola.Tpo -c pwiz/utility/math/Parabola.cpp -fPIC -DPIC -o pwiz/utility/math/.libs/Parabola.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/math/Parabola.lo -MD -MP -MF pwiz/utility/math/.deps/Parabola.Tpo -c pwiz/utility/math/Parabola.cpp -o pwiz/utility/math/Parabola.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Serializer_MGF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" 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pwiz/data/msdata/Serializer_MGF.lo -MD -MP -MF pwiz/data/msdata/.deps/Serializer_MGF.Tpo -c pwiz/data/msdata/Serializer_MGF.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/Serializer_MGF.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" 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pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo -MD -MP -MF pwiz/data/vendor_readers/Bruker/.deps/ChromatogramList_Bruker.Tpo -c pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.cpp -o pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/Reader_ABI.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 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pwiz/data/vendor_readers/ABI/Reader_ABI.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/ABI/Reader_ABI.lo -MD -MP -MF pwiz/data/vendor_readers/ABI/.deps/Reader_ABI.Tpo -c pwiz/data/vendor_readers/ABI/Reader_ABI.cpp -o pwiz/data/vendor_readers/ABI/Reader_ABI.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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pwiz/analysis/passive/SpectrumBinaryData.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/obo.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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pwiz/data/common/obo.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/SpectrumList_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/UIMF/.libs/SpectrumList_UIMF.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo -MD -MP -MF pwiz/data/vendor_readers/UIMF/.deps/SpectrumList_UIMF.Tpo -c pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.cpp -o pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/utility/chemistry/IsotopeTable.lo pwiz/utility/chemistry/IsotopeTable.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeTable.Tpo -c pwiz/utility/chemistry/IsotopeTable.cpp -fPIC -DPIC -o pwiz/utility/chemistry/.libs/IsotopeTable.o In file included from pwiz/utility/chemistry/IsotopeTable.cpp:26: pwiz/utility/chemistry/IsotopeTable.hpp:50:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 50 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from pwiz/utility/chemistry/Chemistry.hpp:33, from pwiz/utility/chemistry/IsotopeTable.hpp:29, from pwiz/utility/chemistry/IsotopeTable.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/chemistry/IsotopeTable.lo -MD -MP -MF pwiz/utility/chemistry/.deps/IsotopeTable.Tpo -c pwiz/utility/chemistry/IsotopeTable.cpp -o pwiz/utility/chemistry/IsotopeTable.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/demux/DemuxHelpers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/DemuxHelpers.lo pwiz/analysis/demux/DemuxHelpers.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxHelpers.Tpo -c pwiz/analysis/demux/DemuxHelpers.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/DemuxHelpers.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/DemuxHelpers.lo -MD -MP -MF pwiz/analysis/demux/.deps/DemuxHelpers.Tpo -c pwiz/analysis/demux/DemuxHelpers.cpp -o pwiz/analysis/demux/DemuxHelpers.o >/dev/null 2>&1 depbase=`echo libraries/libsvm-3.0/svm.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF $depbase.Tpo -c -o libraries/libsvm-3.0/svm.lo libraries/libsvm-3.0/svm.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT libraries/libsvm-3.0/svm.lo -MD -MP -MF libraries/libsvm-3.0/.deps/svm.Tpo -c libraries/libsvm-3.0/svm.cpp -fPIC -DPIC -o libraries/libsvm-3.0/.libs/svm.o libraries/libsvm-3.0/svm.cpp: In function 'svm_model* svm_load_model(const char*)': libraries/libsvm-3.0/svm.cpp:2707:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2707 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2711:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2711 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2733:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2733 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2754:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2754 | fscanf(fp,"%d",¶m.degree); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2756:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2756 | fscanf(fp,"%lf",¶m.gamma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2758:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2758 | fscanf(fp,"%lf",¶m.coef0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2760:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2760 | fscanf(fp,"%d",&model->nr_class); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2762:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2762 | fscanf(fp,"%d",&model->l); | ~~~~~~^~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2768:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2768 | fscanf(fp,"%lf",&model->rho[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2775:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2775 | fscanf(fp,"%d",&model->label[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2782:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2782 | fscanf(fp,"%lf",&model->probA[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2789:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2789 | fscanf(fp,"%lf",&model->probB[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libraries/libsvm-3.0/svm.cpp:2796:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2796 | fscanf(fp,"%d",&model->nSV[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 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-Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/demux/SpectrumPeakExtractor.lo pwiz/analysis/demux/SpectrumPeakExtractor.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/demux/SpectrumPeakExtractor.lo -MD -MP -MF pwiz/analysis/demux/.deps/SpectrumPeakExtractor.Tpo -c pwiz/analysis/demux/SpectrumPeakExtractor.cpp -fPIC -DPIC -o pwiz/analysis/demux/.libs/SpectrumPeakExtractor.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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pwiz/analysis/demux/.deps/SpectrumPeakExtractor.Tpo -c pwiz/analysis/demux/SpectrumPeakExtractor.cpp -o pwiz/analysis/demux/SpectrumPeakExtractor.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzXML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzXML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzXML.Tpo -c pwiz/data/msdata/SpectrumList_mzXML.cpp -o pwiz/data/msdata/SpectrumList_mzXML.o >/dev/null 2>&1 depbase=`echo pwiz/data/common/ParamTypes.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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pwiz/data/common/ParamTypes.lo pwiz/data/common/ParamTypes.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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pwiz/data/tradata/Serializer_traML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/tradata/Serializer_traML.lo pwiz/data/tradata/Serializer_traML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/Serializer_traML.lo -MD -MP -MF pwiz/data/tradata/.deps/Serializer_traML.Tpo -c pwiz/data/tradata/Serializer_traML.cpp -o pwiz/data/tradata/Serializer_traML.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -fPIC -DPIC -o pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o In file included from ./pwiz/analysis/frequency/PeakDetector.hpp:29, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/data/misc/FrequencyData.hpp:157:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 157 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:30, from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/utility/chemistry/IsotopeCalculator.hpp:55:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 55 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:30, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp:74:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 74 | std::auto_ptr impl_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:27: ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp:109:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 109 | static std::auto_ptr create(const Config& config); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:61:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 61 | auto_ptr isotopeEnvelopeEstimator_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:62:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 62 | auto_ptr pdmf_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:64:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 64 | auto_ptr createFrequencyData(const MZIntensityPair* begin, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:130:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 130 | auto_ptr createIsotopeEnvelopeEstimator() | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In function 'std::auto_ptr pwiz::analysis::{anonymous}::createIsotopeEnvelopeEstimator()': pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:139:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 139 | return auto_ptr(new IsotopeEnvelopeEstimator(config)); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function 'void pwiz::analysis::PeakFamilyDetectorFT::Impl::detect(const MZIntensityPair*, const MZIntensityPair*, std::vector&)': pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:169:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 169 | auto_ptr fd = createFrequencyData(begin, end); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: At global scope: pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:181:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 181 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp: In member function 'std::auto_ptr pwiz::analysis::PeakFamilyDetectorFT::Impl::createFrequencyData(const MZIntensityPair*, const MZIntensityPair*) const': pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:185:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 185 | auto_ptr fd(new FrequencyData); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from ./pwiz/utility/misc/BinaryData.hpp:32, from ./pwiz/data/msdata/MSData.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetector.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp:29, from pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp:26: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 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/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo -MD -MP -MF pwiz/analysis/peakdetect/.deps/PeakFamilyDetectorFT.Tpo -c pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp -o pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/DefaultReaderList.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-c pwiz/analysis/passive/TabularConfig.cpp -fPIC -DPIC -o pwiz/analysis/passive/.libs/TabularConfig.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/passive/TabularConfig.lo -MD -MP -MF pwiz/analysis/passive/.deps/TabularConfig.Tpo -c pwiz/analysis/passive/TabularConfig.cpp -o pwiz/analysis/passive/TabularConfig.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo -MD -MP -MF pwiz/data/vendor_readers/Waters/.deps/SpectrumList_Waters.Tpo -c pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp -fPIC -DPIC -o pwiz/data/vendor_readers/Waters/.libs/SpectrumList_Waters.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 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pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp -o pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 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pwiz/analysis/chromatogram_processing/ChromatogramListFactory.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramListFactory.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramListFactory.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramListFactory.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/frequency/MagnitudeLorentzian.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" 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-DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/Peptide.lo pwiz/data/proteome/Peptide.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/Peptide.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/Peptide.lo -MD -MP -MF pwiz/data/proteome/.deps/Peptide.Tpo -c pwiz/data/proteome/Peptide.cpp -o pwiz/data/proteome/Peptide.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumList_mzML.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumList_mzML.lo pwiz/data/msdata/SpectrumList_mzML.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumList_mzML.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumList_mzML.Tpo -c pwiz/data/msdata/SpectrumList_mzML.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumList_mzML.o In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from ./pwiz/data/common/ParamTypes.hpp:33, from ./pwiz/data/msdata/MSData.hpp:30, from pwiz/data/msdata/SpectrumListBase.hpp:28, from pwiz/data/msdata/SpectrumList_mzML.hpp:29, from pwiz/data/msdata/SpectrumList_mzML.cpp:26: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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pwiz/data/vendor_readers/Shimadzu/.deps/SpectrumList_Shimadzu.Tpo -c pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.cpp -o pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/Reader.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianParameters.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianParameters.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/TruncatedLorentzianParameters.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/TruncatedLorentzianParameters.lo -MD -MP -MF pwiz/analysis/frequency/.deps/TruncatedLorentzianParameters.Tpo -c pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp -o pwiz/analysis/frequency/TruncatedLorentzianParameters.o >/dev/null 2>&1 depbase=`echo pwiz/utility/misc/random_access_compressed_ifstream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-o pwiz/utility/misc/random_access_compressed_ifstream.lo pwiz/utility/misc/random_access_compressed_ifstream.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 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-DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 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-DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/utility/misc/random_access_compressed_ifstream.lo -MD -MP -MF pwiz/utility/misc/.deps/random_access_compressed_ifstream.Tpo -c pwiz/utility/misc/random_access_compressed_ifstream.cpp -o pwiz/utility/misc/random_access_compressed_ifstream.o >/dev/null 2>&1 depbase=`echo pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 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"/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo -MD -MP -MF pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_LockmassRefiner.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp -fPIC -DPIC -o pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_LockmassRefiner.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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pwiz/analysis/chromatogram_processing/.deps/ChromatogramList_LockmassRefiner.Tpo -c pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp -o pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.o >/dev/null 2>&1 depbase=`echo pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 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pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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/build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo -MD -MP -MF pwiz/data/vendor_readers/Agilent/.deps/Reader_Agilent.Tpo -c pwiz/data/vendor_readers/Agilent/Reader_Agilent.cpp -o pwiz/data/vendor_readers/Agilent/Reader_Agilent.o >/dev/null 2>&1 depbase=`echo pwiz/data/tradata/TraDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 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-Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/tradata/TraDataFile.lo -MD -MP -MF pwiz/data/tradata/.deps/TraDataFile.Tpo -c pwiz/data/tradata/TraDataFile.cpp -o pwiz/data/tradata/TraDataFile.o >/dev/null 2>&1 depbase=`echo pwiz/data/proteome/ProteomeDataFile.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" 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"/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeDataFile.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/proteome/ProteomeDataFile.lo pwiz/data/proteome/ProteomeDataFile.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 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-c pwiz/data/proteome/ProteomeDataFile.cpp -fPIC -DPIC -o pwiz/data/proteome/.libs/ProteomeDataFile.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 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-DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/proteome/ProteomeDataFile.lo -MD -MP -MF pwiz/data/proteome/.deps/ProteomeDataFile.Tpo -c pwiz/data/proteome/ProteomeDataFile.cpp -o pwiz/data/proteome/ProteomeDataFile.o >/dev/null 2>&1 depbase=`echo pwiz/data/identdata/KwCVMap.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" 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pwiz/data/identdata/KwCVMap.lo -MD -MP -MF pwiz/data/identdata/.deps/KwCVMap.Tpo -c pwiz/data/identdata/KwCVMap.cpp -fPIC -DPIC -o pwiz/data/identdata/.libs/KwCVMap.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 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-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -fPIC -DPIC -o pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp:28:20: warning: 'sampleData_' initialized and declared 'extern' 28 | extern const char* sampleData_ = | ^~~~~~~~~~~ libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo -MD -MP -MF pwiz/analysis/frequency/.deps/MagnitudeLorentzianTestData.Tpo -c pwiz/analysis/frequency/MagnitudeLorentzianTestData.cpp -o pwiz/analysis/frequency/MagnitudeLorentzianTestData.o >/dev/null 2>&1 depbase=`echo pwiz/data/msdata/SpectrumIterator.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ./libtool --tag=CXX --mode=compile x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumIterator.lo -MD -MP -MF $depbase.Tpo -c -o pwiz/data/msdata/SpectrumIterator.lo pwiz/data/msdata/SpectrumIterator.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumIterator.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumIterator.Tpo -c pwiz/data/msdata/SpectrumIterator.cpp -fPIC -DPIC -o pwiz/data/msdata/.libs/SpectrumIterator.o libtool: compile: x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" "-DPACKAGE_STRING=\"libpwiz 3.0.18344\"" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -Ilibraries/boost_aux -Ipwiz/data/msdata/ramp -Ilibraries/Eigen -Ilibraries/CSpline -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I /usr/include/eigen3/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/Eigen -I /build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz/data/msdata/SpectrumIterator.lo -MD -MP -MF pwiz/data/msdata/.deps/SpectrumIterator.Tpo -c pwiz/data/msdata/SpectrumIterator.cpp -o pwiz/data/msdata/SpectrumIterator.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -version-info 3:0:0 -Wl,-z,relro -Wl,-z,now -o libpwiz.la -rpath /usr/lib ./libraries/boost_aux/libs/nowide/src/iostream.lo ./pwiz/utility/math/erf.lo ./pwiz/data/identdata/Version.lo pwiz/data/tradata/Reader.lo ./pwiz/data/msdata/Diff.lo ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.lo ./pwiz/analysis/peakdetect/PeakFitter.lo ./pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.lo ./pwiz/utility/minimxml/XMLWriter.lo pwiz/data/tradata/DefaultReaderList.lo ./pwiz/analysis/demux/DemuxDebugWriter.lo ./pwiz/data/msdata/BinaryDataEncoder.lo ./pwiz/analysis/spectrum_processing/SpectrumList_3D.lo ./pwiz/analysis/passive/RegionSlice.lo ./pwiz/analysis/peptideid/PeptideIDMap.lo ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.lo ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.lo ./pwiz/utility/proteome/IPIFASTADatabase.lo pwiz/Version.lo ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.lo ./pwiz/data/identdata/IdentData.lo ./pwiz/data/msdata/Version.lo ./pwiz/analysis/peakdetect/PeakelPicker.lo ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.lo ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.lo ./pwiz/data/msdata/SpectrumListCache.lo pwiz_tools/common/MSDataAnalyzerApplication.lo ./pwiz/analysis/demux/CubicHermiteSpline.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.lo ./pwiz/utility/misc/TabReader.lo ./pwiz/analysis/peakdetect/FeatureModeler.lo ./pwiz/data/msdata/Serializer_MSn.lo ./pwiz/data/common/diff_std.lo ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.lo ./pwiz/analysis/peakdetect/PeakelGrower.lo ./pwiz/data/proteome/AminoAcid.lo ./pwiz/data/proteome/DefaultReaderList.lo ./pwiz/analysis/peptideid/PeptideID_pepXML.lo ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.lo ./pwiz/analysis/peakdetect/PeakExtractor.lo ./pwiz/utility/misc/Base64.lo ./pwiz/data/msdata/SpectrumList_BTDX.lo ./pwiz/data/msdata/MSDataFile.lo ./pwiz/data/proteome/Reader_FASTA.lo ./pwiz/data/msdata/IO.lo ./pwiz/analysis/common/CwtPeakDetector.lo ./pwiz/analysis/peakdetect/FeatureDetectorSimple.lo ./pwiz/utility/misc/SHA1.lo ./pwiz/utility/misc/VendorReaderTestHarness.lo ./pwiz/analysis/demux/DemuxSolver.lo ./pwiz/data/msdata/SpectrumWorkerThreads.lo ./pwiz/data/identdata/DelimWriter.lo pwiz/data/tradata/IO.lo ./pwiz/analysis/frequency/TruncatedLorentzian.lo pwiz/data/tradata/TraData.lo ./pwiz/data/msdata/SpectrumList_MSn.lo pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.lo ./pwiz/analysis/demux/MatrixIO.lo ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.lo ./pwiz/analysis/common/WhittakerSmoother.lo ./pwiz/analysis/demux/OverlapDemultiplexer.lo ./pwiz/data/common/cv.lo ./pwiz/analysis/demux/DemuxDebugReader.lo ./pwiz/data/msdata/MSNumpress.lo ./pwiz/data/msdata/examples.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.lo ./pwiz/analysis/demux/PrecursorMaskCodec.lo pwiz/data/tradata/Diff.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.lo ./pwiz/data/proteome/Digestion.lo ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.lo ./pwiz/data/msdata/ChromatogramList_mzML.lo ./pwiz/data/misc/MinimumPepXML.lo ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.lo ./pwiz/analysis/common/SavitzkyGolaySmoother.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.lo pwiz/analysis/proteome_processing/ProteinListFactory.lo ./pwiz/utility/math/Stats.lo ./pwiz/analysis/passive/RegionAnalyzer.lo ./pwiz/data/identdata/Serializer_Text.lo ./pwiz/analysis/passive/RegionTIC.lo ./pwiz/data/proteome/Serializer_FASTA.lo ./pwiz/data/proteome/Modification.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.lo ./pwiz/analysis/spectrum_processing/ThresholdFilter.lo ./pwiz/data/misc/FrequencyDataTestData.lo ./pwiz/data/msdata/SpectrumList_MGF.lo ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.lo ./pwiz/data/identdata/Serializer_pepXML.lo ./pwiz/analysis/peakdetect/MZRTField.lo ./pwiz/data/proteome/Diff.lo ./pwiz/utility/chemistry/Chemistry.lo ./pwiz/data/identdata/Diff.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.lo ./pwiz/data/proteome/ProteinListCache.lo ./pwiz/analysis/peakdetect/Noise.lo pwiz/data/tradata/Version.lo ./pwiz/utility/chemistry/ChemistryData.lo ./libraries/CSpline/CSpline.lo ./pwiz/data/msdata/Index_mzML.lo ./pwiz/analysis/frequency/ParameterEstimator.lo ./pwiz/analysis/frequency/FrequencyEstimatorSimple.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.lo ./pwiz/analysis/passive/PepXMLCat.lo ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.lo ./pwiz/analysis/spectrum_processing/MS2Deisotoper.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.lo ./pwiz/data/vendor_readers/Waters/Reader_Waters.lo ./pwiz/data/msdata/SpectrumInfo.lo ./pwiz/analysis/peptideid/PeptideID_flat.lo ./pwiz/data/identdata/examples.lo ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.lo ./pwiz/utility/misc/IntegerSet.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.lo ./pwiz/analysis/demux/MSXDemultiplexer.lo ./pwiz/analysis/Version.lo ./pwiz/data/common/MemoryIndex.lo ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.lo ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.lo ./pwiz/utility/misc/SHA1Calculator.lo ./pwiz/analysis/peakdetect/PeakFamilyDetector.lo ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.lo ./pwiz/data/identdata/DelimReader.lo ./pwiz/data/msdata/References.lo ./pwiz/analysis/passive/MetadataReporter.lo ./pwiz/analysis/spectrum_processing/SpectrumListFactory.lo pwiz/analysis/proteome_processing/ProteinList_Filter.lo ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.lo ./pwiz/analysis/passive/MSDataCache.lo ./pwiz/analysis/passive/SpectrumTable.lo ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.lo ./pwiz/analysis/peakdetect/PeakFinder.lo ./pwiz/data/proteome/examples.lo ./pwiz/data/msdata/MSData.lo ./pwiz/utility/chemistry/IsotopeCalculator.lo ./pwiz/data/vendor_readers/ExtendedReaderList.lo ./pwiz/analysis/frequency/PeakDetectorNaive.lo ./pwiz/data/proteome/Reader.lo ./pwiz/data/misc/FrequencyData.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.lo ./pwiz/utility/misc/BinaryData.lo ./pwiz/data/identdata/Serializer_protXML.lo ./pwiz/utility/chemistry/MZTolerance.lo ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.lo ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.lo ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.lo ./pwiz/data/identdata/Reader.lo ./pwiz/utility/misc/IterationListener.lo pwiz/data/tradata/examples.lo ./pwiz/data/common/CVTranslator.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.lo ./pwiz/data/common/Unimod.lo ./pwiz/data/proteome/Version.lo ./pwiz/data/identdata/IO.lo ./pwiz/data/msdata/Serializer_mzXML.lo ./pwiz/data/identdata/DefaultReaderList.lo ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.lo ./pwiz/analysis/common/ExtraZeroSamplesFilter.lo ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.lo ./pwiz/utility/minimxml/SAXParser.lo ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.lo ./pwiz/data/identdata/IdentDataFile.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.lo ./pwiz/data/msdata/Serializer_mzML.lo ./pwiz/data/identdata/Pep2MzIdent.lo ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.lo ./pwiz/analysis/passive/RegionSIC.lo ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.lo ./pwiz/analysis/passive/RunSummary.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.lo pwiz/data/tradata/References.lo ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.lo ./pwiz/analysis/common/ZeroSampleFiller.lo ./pwiz/utility/misc/MSIHandler.lo ./pwiz/data/msdata/LegacyAdapter.lo ./pwiz/data/msdata/MSDataMerger.lo ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.lo ./pwiz/data/proteome/ProteomeData.lo ./pwiz/analysis/common/LocalMaximumPeakDetector.lo ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.lo ./pwiz/analysis/passive/MSDataAnalyzer.lo ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.lo ./pwiz/utility/math/Parabola.lo ./pwiz/data/msdata/Serializer_MGF.lo ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.lo ./pwiz/data/vendor_readers/ABI/Reader_ABI.lo ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.lo ./pwiz/data/common/BinaryIndexStream.lo ./pwiz/analysis/passive/SpectrumBinaryData.lo ./pwiz/data/common/obo.lo ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.lo ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.lo ./pwiz/utility/chemistry/IsotopeTable.lo ./pwiz/analysis/demux/DemuxHelpers.lo ./libraries/libsvm-3.0/svm.lo ./pwiz/analysis/demux/SpectrumPeakExtractor.lo ./pwiz/data/msdata/SpectrumList_mzXML.lo ./pwiz/data/common/ParamTypes.lo pwiz/data/tradata/Serializer_traML.lo ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.lo ./pwiz/data/msdata/DefaultReaderList.lo ./pwiz/data/misc/PeakData.lo ./pwiz/analysis/passive/TabularConfig.lo ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.lo ./pwiz/analysis/chromatogram_processing/ChromatogramListFactory.lo ./pwiz/analysis/frequency/MagnitudeLorentzian.lo ./pwiz/data/proteome/Peptide.lo ./pwiz/data/msdata/SpectrumList_mzML.lo ./pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.lo ./pwiz/data/msdata/Reader.lo ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.lo ./pwiz/utility/misc/Filesystem.lo ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.lo ./pwiz/analysis/frequency/TruncatedLorentzianParameters.lo ./pwiz/utility/misc/random_access_compressed_ifstream.lo ./pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.lo ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.lo pwiz/data/tradata/TraDataFile.lo ./pwiz/data/proteome/ProteomeDataFile.lo ./pwiz/data/identdata/KwCVMap.lo ./pwiz/data/identdata/Serializer_mzid.lo ./pwiz/data/identdata/References.lo ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.lo ./pwiz/data/msdata/SpectrumIterator.lo -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o ./libraries/boost_aux/libs/nowide/src/.libs/iostream.o ./pwiz/utility/math/.libs/erf.o ./pwiz/data/identdata/.libs/Version.o pwiz/data/tradata/.libs/Reader.o ./pwiz/data/msdata/.libs/Diff.o ./pwiz/data/vendor_readers/Thermo/.libs/SpectrumList_Thermo.o ./pwiz/analysis/peakdetect/.libs/PeakFitter.o ./pwiz/data/vendor_readers/UNIFI/.libs/SpectrumList_UNIFI.o ./pwiz/utility/minimxml/.libs/XMLWriter.o pwiz/data/tradata/.libs/DefaultReaderList.o ./pwiz/analysis/demux/.libs/DemuxDebugWriter.o ./pwiz/data/msdata/.libs/BinaryDataEncoder.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_3D.o ./pwiz/analysis/passive/.libs/RegionSlice.o ./pwiz/analysis/peptideid/.libs/PeptideIDMap.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianEstimator.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorRecalculatorDefault.o ./pwiz/utility/proteome/.libs/IPIFASTADatabase.o pwiz/.libs/Version.o ./pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI_Detail.o ./pwiz/data/identdata/.libs/IdentData.o ./pwiz/data/msdata/.libs/Version.o ./pwiz/analysis/peakdetect/.libs/PeakelPicker.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_TitleMaker.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/SpectrumList_ABI_T2D.o ./pwiz/data/msdata/.libs/SpectrumListCache.o pwiz_tools/common/.libs/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/.libs/CubicHermiteSpline.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ScanSummer.o ./pwiz/utility/misc/.libs/TabReader.o ./pwiz/analysis/peakdetect/.libs/FeatureModeler.o ./pwiz/data/msdata/.libs/Serializer_MSn.o ./pwiz/data/common/.libs/diff_std.o ./pwiz/data/vendor_readers/ABI/.libs/ChromatogramList_ABI.o ./pwiz/analysis/peakdetect/.libs/PeakelGrower.o ./pwiz/data/proteome/.libs/AminoAcid.o ./pwiz/data/proteome/.libs/DefaultReaderList.o ./pwiz/analysis/peptideid/.libs/PeptideID_pepXML.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilterTestData.o ./pwiz/analysis/peakdetect/.libs/PeakExtractor.o ./pwiz/utility/misc/.libs/Base64.o ./pwiz/data/msdata/.libs/SpectrumList_BTDX.o ./pwiz/data/msdata/.libs/MSDataFile.o ./pwiz/data/proteome/.libs/Reader_FASTA.o ./pwiz/data/msdata/.libs/IO.o ./pwiz/analysis/common/.libs/CwtPeakDetector.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorSimple.o ./pwiz/utility/misc/.libs/SHA1.o ./pwiz/utility/misc/.libs/VendorReaderTestHarness.o ./pwiz/analysis/demux/.libs/DemuxSolver.o ./pwiz/data/msdata/.libs/SpectrumWorkerThreads.o ./pwiz/data/identdata/.libs/DelimWriter.o pwiz/data/tradata/.libs/IO.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzian.o pwiz/data/tradata/.libs/TraData.o ./pwiz/data/msdata/.libs/SpectrumList_MSn.o pwiz/analysis/proteome_processing/.libs/ProteinList_DecoyGenerator.o ./pwiz/analysis/demux/.libs/MatrixIO.o ./pwiz/data/vendor_readers/Waters/.libs/ChromatogramList_Waters.o ./pwiz/analysis/common/.libs/WhittakerSmoother.o ./pwiz/analysis/demux/.libs/OverlapDemultiplexer.o ./pwiz/data/common/.libs/cv.o ./pwiz/analysis/demux/.libs/DemuxDebugReader.o ./pwiz/data/msdata/.libs/MSNumpress.o ./pwiz/data/msdata/.libs/examples.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZWindow.o ./pwiz/analysis/demux/.libs/PrecursorMaskCodec.o pwiz/data/tradata/.libs/Diff.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Smoother.o ./pwiz/data/proteome/.libs/Digestion.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker.o ./pwiz/data/msdata/.libs/ChromatogramList_mzML.o ./pwiz/data/misc/.libs/MinimumPepXML.o ./pwiz/utility/chemistry/.libs/IsotopeEnvelopeEstimator.o ./pwiz/analysis/common/.libs/SavitzkyGolaySmoother.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRecalculator.o pwiz/analysis/proteome_processing/.libs/ProteinListFactory.o ./pwiz/utility/math/.libs/Stats.o ./pwiz/analysis/passive/.libs/RegionAnalyzer.o ./pwiz/data/identdata/.libs/Serializer_Text.o ./pwiz/analysis/passive/.libs/RegionTIC.o ./pwiz/data/proteome/.libs/Serializer_FASTA.o ./pwiz/data/proteome/.libs/Modification.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeStateCalculator.o ./pwiz/analysis/spectrum_processing/.libs/ThresholdFilter.o ./pwiz/data/misc/.libs/FrequencyDataTestData.o ./pwiz/data/msdata/.libs/SpectrumList_MGF.o ./pwiz/data/vendor_readers/Thermo/.libs/ChromatogramList_Thermo.o ./pwiz/data/identdata/.libs/Serializer_pepXML.o ./pwiz/analysis/peakdetect/.libs/MZRTField.o ./pwiz/data/proteome/.libs/Diff.o ./pwiz/utility/chemistry/.libs/Chemistry.o ./pwiz/data/identdata/.libs/Diff.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Filter.o ./pwiz/data/proteome/.libs/ProteinListCache.o ./pwiz/analysis/peakdetect/.libs/Noise.o pwiz/data/tradata/.libs/Version.o ./pwiz/utility/chemistry/.libs/ChemistryData.o ./libraries/CSpline/.libs/CSpline.o ./pwiz/data/msdata/.libs/Index_mzML.o ./pwiz/analysis/frequency/.libs/ParameterEstimator.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorSimple.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_Filter.o ./pwiz/analysis/passive/.libs/PepXMLCat.o ./pwiz/analysis/peakdetect/.libs/FeatureDetectorPeakel.o ./pwiz/analysis/spectrum_processing/.libs/MS2Deisotoper.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MetadataFixer.o ./pwiz/data/vendor_readers/Waters/.libs/Reader_Waters.o ./pwiz/data/msdata/.libs/SpectrumInfo.o ./pwiz/analysis/peptideid/.libs/PeptideID_flat.o ./pwiz/data/identdata/.libs/examples.o ./pwiz/analysis/frequency/.libs/FrequencyEstimatorPhysicalModel.o ./pwiz/utility/misc/.libs/IntegerSet.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_SavitzkyGolaySmoother.o ./pwiz/analysis/demux/.libs/MSXDemultiplexer.o ./pwiz/analysis/.libs/Version.o ./pwiz/data/common/.libs/MemoryIndex.o ./pwiz/analysis/spectrum_processing/.libs/PrecursorMassFilter.o ./pwiz/data/vendor_readers/Thermo/.libs/Reader_Thermo.o ./pwiz/utility/misc/.libs/SHA1Calculator.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetector.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFTTestData.o ./pwiz/data/identdata/.libs/DelimReader.o ./pwiz/data/msdata/.libs/References.o ./pwiz/analysis/passive/.libs/MetadataReporter.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumListFactory.o pwiz/analysis/proteome_processing/.libs/ProteinList_Filter.o ./pwiz/data/vendor_readers/ABI/.libs/SpectrumList_ABI.o ./pwiz/analysis/passive/.libs/MSDataCache.o ./pwiz/analysis/passive/.libs/SpectrumTable.o ./pwiz/data/vendor_readers/UIMF/.libs/Reader_UIMF.o ./pwiz/analysis/peakdetect/.libs/PeakFinder.o ./pwiz/data/proteome/.libs/examples.o ./pwiz/data/msdata/.libs/MSData.o ./pwiz/utility/chemistry/.libs/IsotopeCalculator.o ./pwiz/data/vendor_readers/.libs/ExtendedReaderList.o ./pwiz/analysis/frequency/.libs/PeakDetectorNaive.o ./pwiz/data/proteome/.libs/Reader.o ./pwiz/data/misc/.libs/FrequencyData.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ZeroSamplesFilter.o ./pwiz/utility/misc/.libs/BinaryData.o ./pwiz/data/identdata/.libs/Serializer_protXML.o ./pwiz/utility/chemistry/.libs/MZTolerance.o ./pwiz/data/vendor_readers/UNIFI/.libs/Reader_UNIFI.o ./pwiz/data/vendor_readers/Agilent/.libs/ChromatogramList_Agilent.o ./pwiz/analysis/spectrum_processing/.libs/MS2NoiseFilter.o ./pwiz/data/identdata/.libs/Reader.o ./pwiz/utility/misc/.libs/IterationListener.o pwiz/data/tradata/.libs/examples.o ./pwiz/data/common/.libs/CVTranslator.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakPicker.o ./pwiz/data/common/.libs/Unimod.o ./pwiz/data/proteome/.libs/Version.o ./pwiz/data/identdata/.libs/IO.o ./pwiz/data/msdata/.libs/Serializer_mzXML.o ./pwiz/data/identdata/.libs/DefaultReaderList.o ./pwiz/analysis/frequency/.libs/PeakDetectorMatchedFilter.o ./pwiz/analysis/common/.libs/ExtraZeroSamplesFilter.o ./pwiz/data/vendor_readers/Bruker/.libs/SpectrumList_Bruker.o ./pwiz/utility/minimxml/.libs/SAXParser.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_IonMobility.o ./pwiz/data/identdata/.libs/IdentDataFile.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Demux.o ./pwiz/data/msdata/.libs/Serializer_mzML.o ./pwiz/data/identdata/.libs/Pep2MzIdent.o ./pwiz/data/vendor_readers/Shimadzu/.libs/Reader_Shimadzu.o ./pwiz/analysis/passive/.libs/RegionSIC.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_LockmassRefiner.o ./pwiz/analysis/passive/.libs/RunSummary.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PrecursorRefine.o pwiz/data/tradata/.libs/References.o ./pwiz/data/vendor_readers/Shimadzu/.libs/ChromatogramList_Shimadzu.o ./pwiz/analysis/common/.libs/ZeroSampleFiller.o ./pwiz/utility/misc/.libs/MSIHandler.o ./pwiz/data/msdata/.libs/LegacyAdapter.o ./pwiz/data/msdata/.libs/MSDataMerger.o ./pwiz/data/vendor_readers/Bruker/.libs/Reader_Bruker_Detail.o ./pwiz/data/proteome/.libs/ProteomeData.o ./pwiz/analysis/common/.libs/LocalMaximumPeakDetector.o ./pwiz/data/vendor_readers/Agilent/.libs/SpectrumList_Agilent.o ./pwiz/analysis/passive/.libs/MSDataAnalyzer.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_MZRefiner.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_XICGenerator.o ./pwiz/utility/math/.libs/Parabola.o ./pwiz/data/msdata/.libs/Serializer_MGF.o ./pwiz/data/vendor_readers/Bruker/.libs/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/ABI/.libs/Reader_ABI.o ./pwiz/data/vendor_readers/ABI/T2D/.libs/Reader_ABI_T2D.o ./pwiz/data/common/.libs/BinaryIndexStream.o ./pwiz/analysis/passive/.libs/SpectrumBinaryData.o ./pwiz/data/common/.libs/obo.o ./pwiz/data/vendor_readers/UIMF/.libs/SpectrumList_UIMF.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_ChargeFromIsotope.o ./pwiz/utility/chemistry/.libs/IsotopeTable.o ./pwiz/analysis/demux/.libs/DemuxHelpers.o ./libraries/libsvm-3.0/.libs/svm.o ./pwiz/analysis/demux/.libs/SpectrumPeakExtractor.o ./pwiz/data/msdata/.libs/SpectrumList_mzXML.o ./pwiz/data/common/.libs/ParamTypes.o pwiz/data/tradata/.libs/Serializer_traML.o ./pwiz/analysis/peakdetect/.libs/PeakFamilyDetectorFT.o ./pwiz/data/msdata/.libs/DefaultReaderList.o ./pwiz/data/misc/.libs/PeakData.o ./pwiz/analysis/passive/.libs/TabularConfig.o ./pwiz/data/vendor_readers/Waters/.libs/SpectrumList_Waters.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramListFactory.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzian.o ./pwiz/data/proteome/.libs/Peptide.o ./pwiz/data/msdata/.libs/SpectrumList_mzML.o ./pwiz/data/vendor_readers/Shimadzu/.libs/SpectrumList_Shimadzu.o ./pwiz/data/msdata/.libs/Reader.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_Sorter.o ./pwiz/utility/misc/.libs/Filesystem.o ./pwiz/analysis/spectrum_processing/.libs/SpectrumList_PeakFilter.o ./pwiz/analysis/frequency/.libs/TruncatedLorentzianParameters.o ./pwiz/utility/misc/.libs/random_access_compressed_ifstream.o ./pwiz/analysis/chromatogram_processing/.libs/ChromatogramList_LockmassRefiner.o ./pwiz/data/vendor_readers/Agilent/.libs/Reader_Agilent.o pwiz/data/tradata/.libs/TraDataFile.o ./pwiz/data/proteome/.libs/ProteomeDataFile.o ./pwiz/data/identdata/.libs/KwCVMap.o ./pwiz/data/identdata/.libs/Serializer_mzid.o ./pwiz/data/identdata/.libs/References.o ./pwiz/analysis/frequency/.libs/MagnitudeLorentzianTestData.o ./pwiz/data/msdata/.libs/SpectrumIterator.o -L/usr/lib/x86_64-linux-gnu -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libpwiz.so.3 -o .libs/libpwiz.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libpwiz.so.3" && ln -s "libpwiz.so.3.0.0" "libpwiz.so.3") libtool: link: (cd ".libs" && rm -f "libpwiz.so" && ln -s "libpwiz.so.3.0.0" "libpwiz.so") copying selected object files to avoid basename conflicts... libtool: link: ln pwiz/Version.o .libs/libpwiz.lax/lt1-Version.o || cp pwiz/Version.o .libs/libpwiz.lax/lt1-Version.o libtool: link: ln ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt2-Version.o || cp ./pwiz/data/msdata/Version.o .libs/libpwiz.lax/lt2-Version.o libtool: link: ln ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt3-DefaultReaderList.o || cp ./pwiz/data/proteome/DefaultReaderList.o .libs/libpwiz.lax/lt3-DefaultReaderList.o libtool: link: ln pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt4-IO.o || cp pwiz/data/tradata/IO.o .libs/libpwiz.lax/lt4-IO.o libtool: link: ln pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt5-Diff.o || cp pwiz/data/tradata/Diff.o .libs/libpwiz.lax/lt5-Diff.o libtool: link: ln ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt6-Diff.o || cp ./pwiz/data/proteome/Diff.o .libs/libpwiz.lax/lt6-Diff.o libtool: link: ln ./pwiz/data/identdata/Diff.o .libs/libpwiz.lax/lt7-Diff.o || cp ./pwiz/data/identdata/Diff.o .libs/libpwiz.lax/lt7-Diff.o libtool: link: ln pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt8-Version.o || cp pwiz/data/tradata/Version.o .libs/libpwiz.lax/lt8-Version.o libtool: link: ln ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt9-examples.o || cp ./pwiz/data/identdata/examples.o .libs/libpwiz.lax/lt9-examples.o libtool: link: ln ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt10-Version.o || cp ./pwiz/analysis/Version.o .libs/libpwiz.lax/lt10-Version.o libtool: link: ln ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt11-examples.o || cp ./pwiz/data/proteome/examples.o .libs/libpwiz.lax/lt11-examples.o libtool: link: ln ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt12-Reader.o || cp ./pwiz/data/proteome/Reader.o .libs/libpwiz.lax/lt12-Reader.o libtool: link: ln ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt13-Reader.o || cp ./pwiz/data/identdata/Reader.o .libs/libpwiz.lax/lt13-Reader.o libtool: link: ln pwiz/data/tradata/examples.o .libs/libpwiz.lax/lt14-examples.o || cp pwiz/data/tradata/examples.o .libs/libpwiz.lax/lt14-examples.o libtool: link: ln ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt15-Version.o || cp ./pwiz/data/proteome/Version.o .libs/libpwiz.lax/lt15-Version.o libtool: link: ln ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt16-IO.o || cp ./pwiz/data/identdata/IO.o .libs/libpwiz.lax/lt16-IO.o libtool: link: ln ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o || cp ./pwiz/data/identdata/DefaultReaderList.o .libs/libpwiz.lax/lt17-DefaultReaderList.o libtool: link: ln pwiz/data/tradata/References.o .libs/libpwiz.lax/lt18-References.o || cp pwiz/data/tradata/References.o .libs/libpwiz.lax/lt18-References.o libtool: link: ln ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt19-DefaultReaderList.o || cp ./pwiz/data/msdata/DefaultReaderList.o .libs/libpwiz.lax/lt19-DefaultReaderList.o libtool: link: ln ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt20-Reader.o || cp ./pwiz/data/msdata/Reader.o .libs/libpwiz.lax/lt20-Reader.o libtool: link: ln ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt21-References.o || cp ./pwiz/data/identdata/References.o .libs/libpwiz.lax/lt21-References.o libtool: link: x86_64-linux-gnu-ar cr .libs/libpwiz.a ./libraries/boost_aux/libs/nowide/src/iostream.o ./pwiz/utility/math/erf.o ./pwiz/data/identdata/Version.o pwiz/data/tradata/Reader.o ./pwiz/data/msdata/Diff.o ./pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.o ./pwiz/analysis/peakdetect/PeakFitter.o ./pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.o ./pwiz/utility/minimxml/XMLWriter.o pwiz/data/tradata/DefaultReaderList.o ./pwiz/analysis/demux/DemuxDebugWriter.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/analysis/spectrum_processing/SpectrumList_3D.o ./pwiz/analysis/passive/RegionSlice.o ./pwiz/analysis/peptideid/PeptideIDMap.o ./pwiz/analysis/frequency/TruncatedLorentzianEstimator.o ./pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.o ./pwiz/utility/proteome/IPIFASTADatabase.o .libs/libpwiz.lax/lt1-Version.o ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.o ./pwiz/data/identdata/IdentData.o .libs/libpwiz.lax/lt2-Version.o ./pwiz/analysis/peakdetect/PeakelPicker.o ./pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.o ./pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o ./pwiz/data/msdata/SpectrumListCache.o pwiz_tools/common/MSDataAnalyzerApplication.o ./pwiz/analysis/demux/CubicHermiteSpline.o ./pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.o ./pwiz/utility/misc/TabReader.o ./pwiz/analysis/peakdetect/FeatureModeler.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/common/diff_std.o ./pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.o ./pwiz/analysis/peakdetect/PeakelGrower.o ./pwiz/data/proteome/AminoAcid.o .libs/libpwiz.lax/lt3-DefaultReaderList.o ./pwiz/analysis/peptideid/PeptideID_pepXML.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.o ./pwiz/analysis/peakdetect/PeakExtractor.o ./pwiz/utility/misc/Base64.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/proteome/Reader_FASTA.o ./pwiz/data/msdata/IO.o ./pwiz/analysis/common/CwtPeakDetector.o ./pwiz/analysis/peakdetect/FeatureDetectorSimple.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/VendorReaderTestHarness.o ./pwiz/analysis/demux/DemuxSolver.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/DelimWriter.o .libs/libpwiz.lax/lt4-IO.o ./pwiz/analysis/frequency/TruncatedLorentzian.o pwiz/data/tradata/TraData.o ./pwiz/data/msdata/SpectrumList_MSn.o pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.o ./pwiz/analysis/demux/MatrixIO.o ./pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.o ./pwiz/analysis/common/WhittakerSmoother.o ./pwiz/analysis/demux/OverlapDemultiplexer.o ./pwiz/data/common/cv.o ./pwiz/analysis/demux/DemuxDebugReader.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/examples.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o ./pwiz/analysis/demux/PrecursorMaskCodec.o .libs/libpwiz.lax/lt5-Diff.o ./pwiz/analysis/spectrum_processing/SpectrumList_Smoother.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/misc/MinimumPepXML.o ./pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o ./pwiz/analysis/common/SavitzkyGolaySmoother.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o pwiz/analysis/proteome_processing/ProteinListFactory.o ./pwiz/utility/math/Stats.o ./pwiz/analysis/passive/RegionAnalyzer.o ./pwiz/data/identdata/Serializer_Text.o ./pwiz/analysis/passive/RegionTIC.o ./pwiz/data/proteome/Serializer_FASTA.o ./pwiz/data/proteome/Modification.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.o ./pwiz/analysis/spectrum_processing/ThresholdFilter.o ./pwiz/data/misc/FrequencyDataTestData.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/analysis/peakdetect/MZRTField.o .libs/libpwiz.lax/lt6-Diff.o ./pwiz/utility/chemistry/Chemistry.o .libs/libpwiz.lax/lt7-Diff.o ./pwiz/analysis/spectrum_processing/SpectrumList_Filter.o ./pwiz/data/proteome/ProteinListCache.o ./pwiz/analysis/peakdetect/Noise.o .libs/libpwiz.lax/lt8-Version.o ./pwiz/utility/chemistry/ChemistryData.o ./libraries/CSpline/CSpline.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/analysis/frequency/ParameterEstimator.o ./pwiz/analysis/frequency/FrequencyEstimatorSimple.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.o ./pwiz/analysis/passive/PepXMLCat.o ./pwiz/analysis/peakdetect/FeatureDetectorPeakel.o ./pwiz/analysis/spectrum_processing/MS2Deisotoper.o ./pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o ./pwiz/data/vendor_readers/Waters/Reader_Waters.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/analysis/peptideid/PeptideID_flat.o .libs/libpwiz.lax/lt9-examples.o ./pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.o ./pwiz/analysis/demux/MSXDemultiplexer.o .libs/libpwiz.lax/lt10-Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/analysis/spectrum_processing/PrecursorMassFilter.o ./pwiz/data/vendor_readers/Thermo/Reader_Thermo.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/analysis/peakdetect/PeakFamilyDetector.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFTTestData.o ./pwiz/data/identdata/DelimReader.o ./pwiz/data/msdata/References.o ./pwiz/analysis/passive/MetadataReporter.o ./pwiz/analysis/spectrum_processing/SpectrumListFactory.o pwiz/analysis/proteome_processing/ProteinList_Filter.o ./pwiz/data/vendor_readers/ABI/SpectrumList_ABI.o ./pwiz/analysis/passive/MSDataCache.o ./pwiz/analysis/passive/SpectrumTable.o ./pwiz/data/vendor_readers/UIMF/Reader_UIMF.o ./pwiz/analysis/peakdetect/PeakFinder.o .libs/libpwiz.lax/lt11-examples.o ./pwiz/data/msdata/MSData.o ./pwiz/utility/chemistry/IsotopeCalculator.o ./pwiz/data/vendor_readers/ExtendedReaderList.o ./pwiz/analysis/frequency/PeakDetectorNaive.o .libs/libpwiz.lax/lt12-Reader.o ./pwiz/data/misc/FrequencyData.o ./pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.o ./pwiz/utility/misc/BinaryData.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.o ./pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.o ./pwiz/analysis/spectrum_processing/MS2NoiseFilter.o .libs/libpwiz.lax/lt13-Reader.o ./pwiz/utility/misc/IterationListener.o .libs/libpwiz.lax/lt14-examples.o ./pwiz/data/common/CVTranslator.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o ./pwiz/data/common/Unimod.o .libs/libpwiz.lax/lt15-Version.o .libs/libpwiz.lax/lt16-IO.o ./pwiz/data/msdata/Serializer_mzXML.o .libs/libpwiz.lax/lt17-DefaultReaderList.o ./pwiz/analysis/frequency/PeakDetectorMatchedFilter.o ./pwiz/analysis/common/ExtraZeroSamplesFilter.o ./pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/identdata/Pep2MzIdent.o ./pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.o ./pwiz/analysis/passive/RegionSIC.o ./pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o ./pwiz/analysis/passive/RunSummary.o ./pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.o .libs/libpwiz.lax/lt18-References.o ./pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o ./pwiz/analysis/common/ZeroSampleFiller.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/MSDataMerger.o ./pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.o ./pwiz/data/proteome/ProteomeData.o ./pwiz/analysis/common/LocalMaximumPeakDetector.o ./pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o ./pwiz/analysis/passive/MSDataAnalyzer.o ./pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.o ./pwiz/utility/math/Parabola.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.o ./pwiz/data/vendor_readers/ABI/Reader_ABI.o ./pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/analysis/passive/SpectrumBinaryData.o ./pwiz/data/common/obo.o ./pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.o ./pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.o ./pwiz/utility/chemistry/IsotopeTable.o ./pwiz/analysis/demux/DemuxHelpers.o ./libraries/libsvm-3.0/svm.o ./pwiz/analysis/demux/SpectrumPeakExtractor.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/common/ParamTypes.o pwiz/data/tradata/Serializer_traML.o ./pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o .libs/libpwiz.lax/lt19-DefaultReaderList.o ./pwiz/data/misc/PeakData.o ./pwiz/analysis/passive/TabularConfig.o ./pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o ./pwiz/analysis/chromatogram_processing/ChromatogramListFactory.o ./pwiz/analysis/frequency/MagnitudeLorentzian.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.o .libs/libpwiz.lax/lt20-Reader.o ./pwiz/analysis/spectrum_processing/SpectrumList_Sorter.o ./pwiz/utility/misc/Filesystem.o ./pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o ./pwiz/analysis/frequency/TruncatedLorentzianParameters.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.o ./pwiz/data/vendor_readers/Agilent/Reader_Agilent.o pwiz/data/tradata/TraDataFile.o ./pwiz/data/proteome/ProteomeDataFile.o ./pwiz/data/identdata/KwCVMap.o ./pwiz/data/identdata/Serializer_mzid.o .libs/libpwiz.lax/lt21-References.o ./pwiz/analysis/frequency/MagnitudeLorentzianTestData.o ./pwiz/data/msdata/SpectrumIterator.o libtool: link: x86_64-linux-gnu-ranlib .libs/libpwiz.a libtool: link: rm -fr .libs/libpwiz.lax libtool: link: ( cd ".libs" && rm -f "libpwiz.la" && ln -s "../libpwiz.la" "libpwiz.la" ) /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o txt2mzml ./pwiz_tools/examples/txt2mzml.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/txt2mzml ./pwiz_tools/examples/txt2mzml.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/msconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/commandline/msconvert.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/msconvert.o pwiz_tools/commandline/msconvert.cpp &&\ mv -f $depbase.Tpo $depbase.Po pwiz_tools/commandline/msconvert.cpp:444:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 444 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:444:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 444 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:967:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 967 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/msconvert.cpp:967:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 967 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o msconvert pwiz_tools/commandline/msconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/msconvert pwiz_tools/commandline/msconvert.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/mscat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 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pwiz_tools/examples/mscat.o pwiz_tools/examples/mscat.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o mscat ./pwiz_tools/examples/mscat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mscat ./pwiz_tools/examples/mscat.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/hello_analyzer_2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 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./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hello_analyzer_2 ./pwiz_tools/examples/hello_analyzer_2.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/idconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/commandline/idconvert.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/idconvert.o pwiz_tools/commandline/idconvert.cpp &&\ mv -f $depbase.Tpo $depbase.Po pwiz_tools/commandline/idconvert.cpp:204:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 204 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:204:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 204 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:543:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 543 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ pwiz_tools/commandline/idconvert.cpp:543:50: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 543 | << "Build date: " << __DATE__ << " " << __TIME__ << endl; | ^~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o idconvert pwiz_tools/commandline/idconvert.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/idconvert pwiz_tools/commandline/idconvert.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_example_files.o | sed 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-DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_proteome_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_proteome_example_files.o pwiz_tools/examples/write_proteome_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o write_proteome_example_files ./pwiz_tools/examples/write_proteome_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_proteome_example_files ./pwiz_tools/examples/write_proteome_example_files.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/commandline/pepcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/commandline/pepcat.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/commandline/pepcat.o pwiz_tools/commandline/pepcat.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o pepcat pwiz_tools/commandline/pepcat.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/pepcat pwiz_tools/commandline/pepcat.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread depbase=`echo pwiz_tools/examples/write_traml_example_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" -DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" -DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" -DPACKAGE_BUGREPORT=\"proteowizard-support@lists.sourceforge.net\" -DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict -DHAVE_PTRDIFF_T=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ALARM=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 -DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 -DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 -DHAVE_BOOST_IOSTREAMS=1 -DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 -DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 -DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 -I. -Iautotools -pthread -I"libraries/boost_aux" -I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" -DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 -DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen" -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MT pwiz_tools/examples/write_traml_example_files.o -MD -MP -MF $depbase.Tpo -c -o pwiz_tools/examples/write_traml_example_files.o pwiz_tools/examples/write_traml_example_files.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ./libtool --tag=CXX --mode=link x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -o write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o libpwiz.la -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -lboost_thread -lboost_system -pthread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono libtool: link: x86_64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/libpwiz-3.0.18342=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/write_traml_example_files ./pwiz_tools/examples/write_traml_example_files.o -pthread -pthread -L/usr/lib/x86_64-linux-gnu ./.libs/libpwiz.so -lboost_thread -lboost_filesystem -lboost_regex -lboost_serialization -lboost_system -lboost_iostreams -lboost_date_time -lboost_program_options -lboost_chrono -pthread make[1]: Leaving directory '/build/libpwiz-3.0.18342/debian/build' make[1]: Entering directory '/build/libpwiz-3.0.18342/debian/build' make[2]: Entering directory '/build/libpwiz-3.0.18342/debian/build' /bin/mkdir -p '/build/libpwiz-3.0.18342/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/build/libpwiz-3.0.18342/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /build/libpwiz-3.0.18342/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /build/libpwiz-3.0.18342/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.a libtool: install: x86_64-linux-gnu-ranlib /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /bin/mkdir -p '/build/libpwiz-3.0.18342/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c txt2mzml msconvert mscat hello_analyzer_2 idconvert write_example_files hello_msdata write_mzid_example_files hello_analyzer write_proteome_example_files pepcat write_traml_example_files '/build/libpwiz-3.0.18342/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /build/libpwiz-3.0.18342/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /build/libpwiz-3.0.18342/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /build/libpwiz-3.0.18342/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /build/libpwiz-3.0.18342/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /build/libpwiz-3.0.18342/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /build/libpwiz-3.0.18342/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /build/libpwiz-3.0.18342/debian/build/usr/bin/hello_analyzer libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /build/libpwiz-3.0.18342/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_traml_example_files make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/build/libpwiz-3.0.18342/debian/build' make[1]: Leaving directory '/build/libpwiz-3.0.18342/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /build/libpwiz-3.0.18342 sh debian/make-included-headers-hierarchy.sh .pc/gcc-boost-fail-cast-tribool-to-bool-force-it.patch/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz_tools/common/FullReaderList.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/pwiz/Version.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/common/diff_std.hpp debian/build/pwiz/data/common/Index.hpp debian/build/pwiz/data/common/BinaryIndexStream.hpp debian/build/pwiz/data/common/CVTranslator.hpp debian/build/pwiz/data/common/cv.hpp debian/build/pwiz/data/common/obo.hpp debian/build/pwiz/data/common/MemoryIndex.hpp debian/build/pwiz/data/common/Unimod.hpp debian/build/pwiz/data/common/ParamTypes.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/MzidPredicates.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/Serializer_protXML.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/References.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/DefaultReaderList.hpp debian/build/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp debian/build/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp debian/build/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp debian/build/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp debian/build/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/SpectrumInfo.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/examples.hpp debian/build/pwiz/data/msdata/Serializer_MGF.hpp debian/build/pwiz/data/msdata/MSData.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/Index_mzML.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/Version.hpp debian/build/pwiz/data/msdata/BinaryDataEncoder.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/IO.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/BinaryData.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/pinned_gcroot.h debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp debian/build/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/doctest.h debian/build/libraries/CSpline/CSpline.h debian/build/libraries/Eigen/nnls.h debian/build/libraries/libsvm-3.0/svm.h doc/dox/mainpage.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp entering the build-indep-stamp target cd doc/dox && doxygen warning: Tag 'USE_WINDOWS_ENCODING' at line 11 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DETAILS_AT_TOP' at line 33 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 70 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 119 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 130 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 177 of file 'Doxyfile' has become obsolete. 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Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/libpwiz-3.0.18342/pwiz Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/common Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/demux Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/frequency Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/passive Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/peptideid Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/common Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/identdata Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/misc Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/msdata Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/proteome Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/tradata Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/chemistry Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/utilities Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/math Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/minimxml Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/misc Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/proteome Searching for files in directory /build/libpwiz-3.0.18342/doc/dox Reading and parsing tag files Parsing files Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... 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Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/TabularConfig.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/TabularConfig.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModeler.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModeler.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTField.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTField.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/Noise.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/Noise.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/NoiseTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/NoiseTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrower.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrower.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPicker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPicker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractor.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractor.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinder.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinder.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flat.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flat.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMap.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMap.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStreamTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStreamTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/cvtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/cvtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/diff_std_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndexTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndexTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/obo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/obo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/obotest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/obotest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypes.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypes.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/UnimodTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/UnimodTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimReader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimReader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/ExtendedReadTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/ExtendedReadTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Index_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Index_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFileTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFileTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMerger.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMerger.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMergerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMergerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSnReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSnReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SHA1OutputObserver.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SHA1OutputObserver.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfoTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfoTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIterator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIterator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIteratorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIteratorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_BTDX.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_BTDX.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBase.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBase.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBaseTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBaseTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCache.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCache.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCacheTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCacheTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapper.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapper.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcidTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcidTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/DigestionTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/DigestionTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Modification.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Modification.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/PeptideTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/PeptideTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCacheTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCacheTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapper.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapper.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapperTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapperTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFileTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFileTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader_FASTA.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader_FASTA.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/IOTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/IOTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFileTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFileTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Chemistry.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Chemistry.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Ion.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Ion.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTable.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTable.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTableTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTableTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZTolerance.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZTolerance.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZToleranceTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZToleranceTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/base.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/base.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/basetest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/basetest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/constants.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/constants.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copy_iftest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copy_iftest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copyif.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copyif.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsumtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsumtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/difftest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/difftest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/scale.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/scale.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/base.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/base.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepicker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepicker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bin1d.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bin1d.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/breakspec.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/breakspec.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2dense.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2dense.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/erf.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/erf.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/erfTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/erfTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQR.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQR.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQRTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQRTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquares.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquares.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquaresTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquaresTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolver.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolver.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolverTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolverTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/MatrixInverse.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/MatrixInverse.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPair.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPair.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPairTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPairTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/Parabola.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/Parabola.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/ParabolaTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/ParabolaTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/qr.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/qr.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/qrTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/qrTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/round.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/round.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/Stats.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/Stats.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/StatsTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/StatsTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/Types.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/Types.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParser.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParser.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParserTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParserTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/CharIndexedVector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/CharIndexedVector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Container.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Container.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/cpp_cli_utilities.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/cpp_cli_utilities.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTime.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTime.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTimeTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTimeTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/endian.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/endian.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/endian_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/endian_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Environment.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Environment.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Exception.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Exception.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/ExceptionTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/ExceptionTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Export.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Export.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/FailTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/FailTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Filesystem.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Filesystem.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/FilesystemTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/FilesystemTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSet.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSet.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSetTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSetTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListener.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListener.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListenerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListenerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/MSIHandler.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/MSIHandler.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Once.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Once.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/optimized_lexical_cast.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/optimized_lexical_cast.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/pinned_gcroot.h... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/pinned_gcroot.h... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1.h... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1.h... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1Calculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1Calculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1CalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1CalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/shared_map.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/shared_map.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Sing/build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/constants.hpp:28: warning: the name 'Constants.h' supplied as the argument in the \file statement is not an input file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp:27: warning: the name 'cumsum.h' supplied as the argument in the \file statement is not an input file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp:29: warning: the name 'MassCompareFunctors.h' supplied as the argument in the \file statement is not an input file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:42: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::frequency::FrequencyEstimatorSimple::Type /build/libpwiz-3.0.18342/pwiz/analysis/frequency/TruncatedLorentzian.hpp:43: warning: documented symbol 'enum PWIZ_API_DECL pwiz::frequency::TruncatedLorentzian::ParameterIndex' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzer.hpp:75: warning: documented symbol 'enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzer::UpdateRequest' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzer.hpp:164: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzerDriver::Status /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:112: warning: documented symbol 'enum PWIZ_API_DECL pwiz::cv::pwiz::cv::CVID' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp:80: warning: member with no name found. /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IdentDataFile::pwiz::identdata::IdentDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp:211: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::AnalysisDataFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp:255: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::SequenceCollectionFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp:54: warning: documented symbol 'enum PWIZ_API_DECL pwiz::data::FrequencyData::IOMode' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp:173: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::BinaryDataFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp:212: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::SpectrumListFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MemoryMRUCacheMode' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MSDataFile::pwiz::msdata::MSDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp:43: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::proteome::AminoAcid::pwiz::proteome::AminoAcid::Type /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp:117: warning: no matching class member found for enum PWIZ_API_DECL pwiz::proteome::Digestion::pwiz::proteome::Digestion::Specificity /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:40: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationParsing' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationDelimiter' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp:36: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteinListCacheMode' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteomeDataFile::pwiz::proteome::ProteomeDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp:45: warning: documented symbol 'enum PWIZ_API_DECL pwiz::tradata::TraDataFile::pwiz::tradata::TraDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Chemistry.hpp:78: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::chemistry::Element::pwiz::chemistry::Element::Type /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculator.hpp:44: warning: documented symbol 'enum PWIZ_API_DECL pwiz::chemistry::IsotopeCalculator::NormalizationFlags' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquares.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearLeastSquaresType' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolver.hpp:47: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearSolverType' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriter.hpp:52: warning: documented symbol 'enum PWIZ_API_DECL pwiz::minimxml::XMLWriter::pwiz::minimxml::XMLWriter::StyleFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp:64: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Align' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp:65: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Size' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! leton.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Singleton.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Std.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Std.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Stream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Stream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/String.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/String.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Timer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Timer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/unit.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/unit.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/VendorReaderTestHarness.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/VendorReaderTestHarness.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/virtual_map.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/virtual_map.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/proteome/IPIFASTADatabase.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/proteome/IPIFASTADatabase.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/proteome/IPIFASTADatabaseTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/doc/dox/mainpage.hpp... Parsing file /build/libpwiz-3.0.18342/doc/dox/mainpage.hpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating code for file mainpage.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/CwtPeakDetector.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/DataFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/PeakDetector.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/PeakDetector.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/Smoother.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/WhittakerSmoother.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/WhittakerSmootherTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/ZeroSampleFiller.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/CubicHermiteSpline.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxDebugReader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxDebugReadWriteTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxDebugWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxHelpers.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxHelpersTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxSolver.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxSolverTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxTypes.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/IDemultiplexer.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/IInterpolation.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/MatrixIO.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/MatrixIOTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/MSXDemultiplexer.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/DerivativeTest.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/FrequencyEstimator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModelTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/FrequencyEstimatorSimpleTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/MagnitudeLorentzian.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/MagnitudeLorentzianTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/ParameterEstimator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/ParametrizedFunction.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/ParametrizedFunctionTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/PeakDetectorMatchedFilterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/PeakDetectorNaive.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/PeakDetectorNaiveTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/TruncatedLorentzian.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/TruncatedLorentzianParametersTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/TruncatedLorentzianTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MetadataReporter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzer.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataCache.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataCacheTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/PepXMLCat.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionAnalyzer.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionSIC.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionSlice.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionTIC.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RunSummary.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/SpectrumBinaryData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/SpectrumTable.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/passive/TabularConfig.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetector.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModeler.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTField.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/Noise.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/NoiseTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrower.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPicker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractor.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinder.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flat.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMap.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStream.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/cvtest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslatorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std_test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndexTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/obo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/obotest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypes.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/UnimodTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/DefaultReaderList.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/DefaultReaderList.hpp... 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Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/IOTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Index_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFileTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMerger.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMergerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSnReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIterator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBase.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBaseTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCache.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCacheTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapper.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcidTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/DigestionTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Modification.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/PeptideTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCacheTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapper.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapperTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFileTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader_FASTA.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFileTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... 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Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata//build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found Version.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/Version.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStream.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/cvtest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslator.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslatorTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std_test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndexTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/obo.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/obotest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypes.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypesTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/UnimodTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/DefaultReaderList.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/DefaultReaderList.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/DefaultReaderList.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/DefaultReaderList.hpp... 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Generating docs for file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/difftest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/examples.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/examples.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/examples.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/examples.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ExtendedReadTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataFile.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /tradata/IOTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... 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Generating group documentation... Generating class documentation... Generating docs for compound AnotherRootHandler... Generating docs for compound BadListener... Generating docs for compound CancelListener... Generating docs for compound CancelProgressCallback... Generating docs for compound CSHA1... Generating docs for compound CubicHermiteSplineTest... Generating docs for compound CustomPair... Generating docs for compound Datum... Generating docs for compound DefaultArrayLengthSorter... Generating docs for compound DemuxDebugRWTest... Generating docs for compound DemuxHelpersTest... Generating docs for compound DemuxSolverTest... Generating docs for compound DemuxTest... Generating docs for nested compound DemuxTest::MSDPair... Generating docs for compound DigestedPeptideLessThan... Generating docs for compound EnumConstantNotPresentException... Generating docs for compound EnzymePtr_missedCleavages... Generating docs for compound EnzymePtr_specificity... Generating docs for compound EvenMS2Predicate... Generating docs for compound EvenPredicate... Generating docs for compound EvenRequester... Generating docs for compound Fifth... Generating docs for compound FifthHandler... Generating docs for compound FilterWrapper... Generating docs for compound First... Generating docs for compound FirstHandler... Generating docs for compound FTSieve... Generating docs for compound Goober... Generating docs for compound HasBinaryDataPredicate... Generating docs for compound IInterpolation... Generating docs for compound Is_T2D_Directory... Generating docs for compound IsDirectory... Generating docs for compound IsIMSData... Generating docs for compound isoChain... Generating docs for compound isotopeChain... Generating docs for compound IsRawData... Generating docs for compound IsRawFile... Generating docs for compound IsTDF... Generating docs for compound IsWiffFile... Generating docs for compound MatrixIOTest... Generating docs for compound MSDataWithSettableVersion... Generating docs for compound MSLevelSorter... Generating docs for compound MyBase... Generating docs for compound MyPred... Generating docs for compound MyWrapper... Generating docs for compound mzrtEqual... Generating docs for compound NestedHandler... Generating docs for compound OneMinusAbs... Generating docs for compound pairData... Generating docs for compound ParametrizedCosine... Generating docs for compound parentIon... Generating docs for compound precursorGroup... Generating docs for compound PrintAttribute... Generating docs for compound PrintEventHandler... Generating docs for compound RawMassDatum... Generating docs for compound Reader1... Generating docs for nested compound Reader1::Config... Generating docs for nested compound Reader1::ReaderConfig... Generating docs for compound Reader2... Generating docs for nested compound Reader2::Config... Generating docs for nested compound Reader2::ReaderConfig... Generating docs for compound ridgeLine... Generating docs for compound Root... Generating docs for compound RootHandler... Generating docs for compound rtimeMap... Generating docs for compound scoreChain... Generating docs for compound Second... Generating docs for compound SecondHandler... Generating docs for compound SelectedIndexPredicate... Generating docs for compound SetRetentionTime... Generating docs for compound SHA1_WORKSPACE_BLOCK... Generating docs for compound Simple... Generating docs for compound SimpleAnalyzer... Generating docs for compound SimpleProgressCallback... Generating docs for compound SpectrumPeakExtractorTest... Generating docs for compound TestAminoAcid... Generating docs for compound TestChargeStateCalculator... Generating docs for compound TestData... Generating docs for compound TestDatum... Generating docs for compound TestDeisotopeCalculator... Generating docs for compound TestDeisotoper... Generating docs for compound TestETDMassFilter... Generating docs for compound TestFormula... Generating docs for compound TestFragmentation... Generating docs for compound TestInfo... Generating docs for compound TestIterationListener... Generating docs for compound TestIterationListener_WithCancel... Generating docs for compound TestListener... Generating docs for compound TestMetadataFixer... Generating docs for compound TestModification... Generating docs for compound TestModifiedPeptide... Generating docs for compound TestMS2Denoise... Generating docs for compound TestOperator... Generating docs for compound TestOutputObserver... Generating docs for compound TestPair... Generating docs for compound TestPathmask... Generating docs for compound TestPeptide... Generating docs for compound TestReader... Generating docs for compound TestScanSummerCalculator... Generating docs for compound TestSpectrumInfo... Generating docs for compound TestThresholder... Generating docs for compound ThreadStatus... Generating docs for compound UserParamNameIs... Generating docs for compound WriteCVParam... Generating namespace index... Generating docs for namespace boost Generating docs for namespace boost::date_time Generating docs for namespace DemuxTypes Generating docs for namespace msclr Generating docs for compound msclr::pinned_gcroot... Generating docs for namespace pwiz Generating docs for compound pwiz::Version... Generating docs for namespace pwiz::analysis Generating docs for compound pwiz::analysis::ChromatogramList_Filter... Generating docs for nested compound pwiz::analysis::ChromatogramList_Filter::Predicate... Generating docs for compound pwiz::analysis::ChromatogramList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ChromatogramList_LockmassRefiner... Generating docs for compound pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::ChromatogramList_XICGenerator... Generating docs for compound pwiz::analysis::ChromatogramListFactory... Generating docs for compound pwiz::analysis::ChromatogramListWrapper... Generating docs for compound pwiz::analysis::SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::CwtPeakDetector... Generating docs for compound pwiz::analysis::SpectrumDataFilter... Generating docs for compound pwiz::analysis::ChromatogramDataFilter... Generating docs for compound pwiz::analysis::ExtraZeroSamplesFilter... Generating docs for compound pwiz::analysis::LocalMaximumPeakDetector... Generating docs for compound pwiz::analysis::Peak... Generating docs for compound pwiz::analysis::PeakDetector... Generating docs for compound pwiz::analysis::Smoother... Generating docs for compound pwiz::analysis::WhittakerSmoother... Generating docs for compound pwiz::analysis::ZeroSampleFiller... Generating docs for compound pwiz::analysis::CubicHermiteSpline... Generating docs for compound pwiz::analysis::DemuxDebugReader... Generating docs for compound pwiz::analysis::DemuxDebugWriter... Generating docs for compound pwiz::analysis::DemuxSolver... Generating docs for compound pwiz::analysis::NNLSSolver... Generating docs for compound pwiz::analysis::IDemultiplexer... Generating docs for compound pwiz::analysis::IsoWindowHasher... Generating docs for compound pwiz::analysis::DemuxWindow... Generating docs for compound pwiz::analysis::IsolationWindow... Generatin/build/libpwiz-3.0.18342/pwiz/analysis/demux/PrecursorMaskCodec.hpp:92: warning: argument 'demuxWindows' from the argument list of pwiz::analysis::PrecursorMaskCodec::IdentifyOverlap has multiple @param documentation sections /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:37: warning: argument 'ppmError' of command @param is not found in the argument list of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:42: warning: The following parameter of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) is not documented: parameter 'massError' g docs for compound pwiz::analysis::IPrecursorMaskCodec... Generating docs for compound pwiz::analysis::MatrixIO... Generating docs for compound pwiz::analysis::MSXDemultiplexer... Generating docs for nested compound pwiz::analysis::MSXDemultiplexer::Params... Generating docs for compound pwiz::analysis::OverlapDemultiplexer... Generating docs for nested compound pwiz::analysis::OverlapDemultiplexer::Params... Generating docs for compound pwiz::analysis::PrecursorMaskCodec... Generating docs for nested compound pwiz::analysis::PrecursorMaskCodec::DemuxBoundary... Generating docs for compound pwiz::analysis::SpectrumPeakExtractor... Generating docs for compound pwiz::analysis::MetadataReporter... Generating docs for compound pwiz::analysis::analyzer_strings< MetadataReporter >... Generating docs for compound pwiz::analysis::MSDataAnalyzer... Generating docs for nested compound pwiz::analysis::MSDataAnalyzer::DataInfo... Generating docs for compound pwiz::analysis::analyzer_strings... Generating docs for compound pwiz::analysis::MSDataAnalyzerContainer... Generating docs for compound pwiz::analysis::MSDataAnalyzerDriver... Generating docs for nested compound pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback... Generating docs for compound pwiz::analysis::MSDataCache... Generating docs for nested compound pwiz::analysis::MSDataCache::Config... Generating docs for compound pwiz::analysis::PepxmlRecordReader... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::Config... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::record... Generating docs for compound pwiz::analysis::RegionAnalyzer... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Config... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::SpectrumStats... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Stats... Generating docs for compound pwiz::analysis::RegionSIC... Generating docs for nested compound pwiz::analysis::RegionSIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSIC >... Generating docs for compound pwiz::analysis::RegionSlice... Generating docs for nested compound pwiz::analysis::RegionSlice::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSlice >... Generating docs for compound pwiz::analysis::RegionTIC... Generating docs for nested compound pwiz::analysis::RegionTIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionTIC >... Generating docs for compound pwiz::analysis::RunSummary... Generating docs for nested compound pwiz::analysis::RunSummary::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RunSummary >... Generating docs for compound pwiz::analysis::SpectrumBinaryData... Generating docs for nested compound pwiz::analysis::SpectrumBinaryData::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumBinaryData >... Generating docs for compound pwiz::analysis::SpectrumTable... Generating docs for nested compound pwiz::analysis::SpectrumTable::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumTable >... Generating docs for compound pwiz::analysis::TabularConfig... Generating docs for compound pwiz::analysis::FeatureDetector... Generating docs for compound pwiz::analysis::FeatureDetectorPeakel... Generating docs for nested compound pwiz::analysis::FeatureDetectorPeakel::Config... Generating docs for compound pwiz::analysis::FeatureDetectorSimple... Generating docs for compound pwiz::analysis::FeatureModeler... Generating docs for compound pwiz::analysis::FeatureModeler_Gaussian... Generating docs for compound pwiz::analysis::MZRTField... Generating docs for compound pwiz::analysis::RTMatches_Any... Generating docs for compound pwiz::analysis::RTMatches_Contains... Generating docs for compound pwiz::analysis::RTMatches_IsContainedIn... Generating docs for compound pwiz::analysis::Noise... Generating docs for compound pwiz::analysis::NoiseCalculator... Generating docs for compound pwiz::analysis::NoiseCalculator_2Pass... Generating docs for nested compound pwiz::analysis::NoiseCalculator_2Pass::Config... Generating docs for compound pwiz::analysis::PeakelGrower... Generating docs for compound pwiz::analysis::PeakelGrower_Proximity... Generating docs for nested compound pwiz::analysis::PeakelGrower_Proximity::Config... Generating docs for compound pwiz::analysis::PeakelPicker... Generating docs for compound pwiz::analysis::PeakelPicker_Basic... Generating docs for nested compound pwiz::analysis::PeakelPicker_Basic::Config... Generating docs for compound pwiz::analysis::PeakExtractor... Generating docs for compound pwiz::analysis::PeakFamilyDetector... Generating docs for compound pwiz::analysis::PeakFamilyDetectorFT... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::Config... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::NoDataException... Generating docs for compound pwiz::analysis::PeakFinder... Generating docs for compound pwiz::analysis::PeakFinder_SNR... Generating docs for nested compound pwiz::analysis::PeakFinder_SNR::Config... Generating docs for compound pwiz::analysis::PeakFitter... Generating docs for compound pwiz::analysis::PeakFitter_Parabola... Generating docs for nested compound pwiz::analysis::PeakFitter_Parabola::Config... Generating docs for compound pwiz::analysis::ProteinList_DecoyGenerator... Generating docs for nested compound pwiz::analysis::ProteinList_DecoyGenerator::Predicate... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled... Generating docs for compound pwiz::analysis::ProteinList_Filter... Generating docs for nested compound pwiz::analysis::ProteinList_Filter::Predicate... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::ProteinListFactory... Generating docs for compound pwiz::analysis::MS2Deisotoper... Generating docs for nested compound pwiz::analysis::MS2Deisotoper::Config... Generating docs for compound pwiz::analysis::MS2NoiseFilter... Generating docs for nested compound pwiz::analysis::MS2NoiseFilter::Config... Generating docs for compound pwiz::analysis::PrecursorMassFilter... Generating docs for nested compound pwiz::analysis::PrecursorMassFilter::Config... Generating docs for compound pwiz::analysis::PrecursorRecalculator... Generating docs for nested compound pwiz::analysis::PrecursorRecalculator::PrecursorInfo... Generating docs for compound pwiz::analysis::PrecursorRecalculatorDefault... Generating docs for nested compound pwiz::analysis::PrecursorRecalculatorDefault::Config... Generating docs for compound pwiz::analysis::SpectrumList_3D... Generating docs for compound pwiz::analysis::SpectrumList_ChargeFromIsotope... Generating docs for compound pwiz::analysis::SpectrumList_ChargeStateCalculator... Generating docs for compound pwiz::analysis::SpectrumList_Demux... Generating docs for nested compound pwiz::analysis::SpectrumList_Demux::Params... Generating docs for compound pwiz::analysis::SpectrumList_Filter... Generating docs for nested compound pwiz::analysis::SpectrumList_Filter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet... Generating do/build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:61: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:63: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:65: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp:126: warning: expected whitespace after \a command cs for compound pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ActivationType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_Polarity... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MzPresent... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter... Generating docs for compound pwiz::analysis::SpectrumList_IonMobility... Generating docs for compound pwiz::analysis::SpectrumList_LockmassRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MetadataFixer... Generating docs for compound pwiz::analysis::SpectrumList_MZRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MZWindow... Generating docs for compound pwiz::analysis::SpectrumList_PeakFilter... Generating docs for compound pwiz::analysis::IsolationWindowFilter... Generating docs for compound pwiz::analysis::SpectrumList_PeakPicker... Generating docs for compound pwiz::analysis::NoVendorPeakPickingException... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRecalculator... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRefine... Generating docs for nested compound pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo... Generating docs for compound pwiz::analysis::SpectrumList_ScanSummer... Generating docs for compound pwiz::analysis::SpectrumList_Smoother... Generating docs for compound pwiz::analysis::SpectrumList_Sorter... Generating docs for nested compound pwiz::analysis::SpectrumList_Sorter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_SorterPredicate_ScanStartTime... Generating docs for compound pwiz::analysis::SpectrumList_TitleMaker... Generating docs for compound pwiz::analysis::SpectrumList_ZeroSamplesFilter... Generating docs for compound pwiz::analysis::SpectrumListFactory... Generating docs for compound pwiz::analysis::ThresholdFilter... Generating docs for compound pwiz::analysis::Version... Generating docs for namespace pwiz::chemistry Generating docs for compound pwiz::chemistry::MassAbundance... Generating docs for compound pwiz::chemistry::Formula... Generating docs for compound pwiz::chemistry::IsotopeCalculator... Generating docs for compound pwiz::chemistry::IsotopeEnvelopeEstimator... Generating docs for nested compound pwiz::chemistry::IsotopeEnvelopeEstimator::Config... Generating docs for compound pwiz::chemistry::IsotopeTable... Generating docs for compound pwiz::chemistry::MZTolerance... Generating docs for namespace pwiz::chemistry::detail Generating docs for compound pwiz::chemistry::detail::Isotope... Generating docs for compound pwiz::chemistry::detail::Element... Generating docs for namespace pwiz::chemistry::Element Generating docs for namespace pwiz::chemistry::Element::Info Generating docs for compound pwiz::chemistry::Element::Info::Record... Generating docs for namespace pwiz::chemistry::Ion Generating docs for namespace pwiz::cv Generating docs for compound pwiz::cv::CV... Generating docs for compound pwiz::cv::CVTermInfo... Generating docs for namespace pwiz::data Generating docs for compound pwiz::data::BinaryIndexStream... Generating docs for compound pwiz::data::CVTranslator... Generating docs for compound pwiz::data::BaseDiffConfig... Generating docs for compound pwiz::data::Diff... Generating docs for compound pwiz::data::Index... Generating docs for nested compound pwiz::data::Index::Entry... Generating docs for compound pwiz::data::MemoryIndex... Generating docs for compound pwiz::data::Term... Generating docs for compound pwiz::data::OBO... Generating docs for compound pwiz::data::CVParam... Generating docs for compound pwiz::data::CVParamIs... Generating docs for compound pwiz::data::CVParamIsChildOf... Generating docs for compound pwiz::data::UserParam... Generating docs for compound pwiz::data::ParamContainer... Generating docs for compou/build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' nd pwiz::data::ParamGroup... Generating docs for compound pwiz::data::CalibrationParameters... Generating docs for compound pwiz::data::FrequencyData... Generating docs for compound pwiz::data::SampleDatum... Generating docs for namespace pwiz::data::diff_impl Generating docs for compound pwiz::data::diff_impl::HasID... Generating docs for compound pwiz::data::diff_impl::Same... Generating docs for compound pwiz::data::diff_impl::SameDeep... Generating docs for namespace pwiz::data::peakdata Generating docs for compound pwiz::data::peakdata::Peak... Generating docs for compound pwiz::data::peakdata::HandlerPeak... Generating docs for compound pwiz::data::peakdata::PeakFamily... Generating docs for compound pwiz::data::peakdata::Scan... Generating docs for compound pwiz::data::peakdata::Software... Generating docs for nested compound pwiz::data::peakdata::Software::Parameter... Generating docs for compound pwiz::data::peakdata::PeakData... Generating docs for compound pwiz::data::peakdata::Peakel... Generating docs for compound pwiz::data::peakdata::HandlerPeakel... Generating docs for compound pwiz::data::peakdata::Feature... Generating docs for compound pwiz::data::peakdata::HandlerFeature... Generating docs for compound pwiz::data::peakdata::FeatureFile... Generating docs for namespace pwiz::data::pepxml Generating docs for compound pwiz::data::pepxml::Specificity... Generating docs for compound pwiz::data::pepxml::SampleEnzyme... Generating docs for compound pwiz::data::pepxml::SearchDatabase... Generating docs for compound pwiz::data::pepxml::Q3RatioResult... Generating docs for compound pwiz::data::pepxml::RocDataPoint... Generating docs for compound pwiz::data::pepxml::ErrorPoint... Generating docs for compound pwiz::data::pepxml::DistributionPoint... Generating docs for compound pwiz::data::pepxml::MixtureModel... Generating docs for compound pwiz::data::pepxml::PeptideProphetSummary... Generating docs for compound pwiz::data::pepxml::PeptideProphetResult... Generating docs for compound pwiz::data::pepxml::AnalysisResult... Generating docs for compound pwiz::data::pepxml::AlternativeProtein... Generating docs for compound pwiz::data::pepxml::ModAminoAcidMass... Generating docs for compound pwiz::data::pepxml::ModificationInfo... Generating docs for compound pwiz::data::pepxml::Parameter... Generating docs for compound pwiz::data::pepxml::SearchScore... Generating docs for compound pwiz::data::pepxml::SearchHit... Generating docs for compound pwiz::data::pepxml::SearchResult... Generating docs for compound pwiz::data::pepxml::EnzymaticSearchConstraint... Generating docs for compound pwiz::data::pepxml::AminoAcidModification... Generating docs for compound pwiz::data::pepxml::SearchSummary... Generating docs for compound pwiz::data::pepxml::AnalysisTimestamp... Generating docs for compound pwiz::data::pepxml::SpectrumQuery... Generating docs for compound pwiz::data::pepxml::MSMSRunSummary... Generating docs for compound pwiz::data::pepxml::AnalysisSummary... Generating docs for compound pwiz::data::pepxml::DataFilter... Generating docs for compound pwiz::data::pepxml::DatasetDerivation... Generating docs for compound pwiz::data::pepxml::MSMSPipelineAnalysis... Generating docs for compound pwiz::data::pepxml::Match... Generating docs for compound pwiz::data::pepxml::MatchData... Generating docs for namespace pwiz::data::SampleDatumConstant Generating docs for namespace pwiz::data::unimod Generating docs for namespace pwiz::frequency Generating docs for compound pwiz::frequency::FrequencyEstimator... Generating docs for compound pwiz::frequency::FrequencyEstimatorPhysicalModel... Generating docs for nested compound pwiz::frequency::FrequencyEstimatorPhysicalModel::Config... Generating docs for compound pwiz::frequency::FrequencyEstimatorSimple... Generating docs for compound pwiz::frequency::MagnitudeLorentzian... Generating docs for compound pwiz::frequency::ParameterEstimator... Generating docs for compound pwiz::frequency::ParametrizedFunction... Generating docs for nested compound pwiz::frequency::ParametrizedFunction::ErrorFunction... Generating docs for compound pwiz::frequency::PeakDetector... Generating docs for compound pwiz::frequency::PeakDetectorMatchedFilter... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Config... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Score... Generating docs for compound pwiz::frequency::PeakDetectorNaive... Generating docs for compound pwiz::frequency::TruncatedLorentzian... Generating docs for compound pwiz::frequency::TruncatedLorentzianEstimator... Generating docs for compound pwiz::frequency::TruncatedLorentzianParameters... Generating docs for namespace pwiz::frequency::DerivativeTest Generating docs for compound pwiz::frequency::DerivativeTest::VectorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorDerivative... Generating docs for namespace pwiz::identdata Generating docs for compound pwiz::identdata::DefaultReaderList... Generating docs for compound pwiz::identdata::DelimReader... Generating docs for compound pwiz::identdata::DelimWriter... Generating docs for compound pwiz::identdata::DiffConfig... Generating docs for compound pwiz::identdata::Identifiable... Generating docs for compound pwiz::identdata::IdentifiableParamContainer... Generating docs for compound pwiz::identdata::BibliographicReference... Generating docs for compound pwiz::identdata::Contact... Generating docs for compound pwiz::identdata::Organization... Generating docs for compound pwiz::identdata::Person... Generating docs for compound pwiz::identdata::ContactRole... Generating docs for compound pwiz::identdata::Sample... Generating docs for compound pwiz::identdata::AnalysisSoftware... Generating docs for compound pwiz::identdata::Provider... Generating docs for compound pwiz::identdata::AnalysisSampleCollection... Generating docs for compound pwiz::identdata::SearchDatabase... Generating docs for compound pwiz::identdata::DBSequence... Generating docs for compound pwiz::identdata::Modification... Generating docs for compound pwiz::identdata::SubstitutionModification... Generating docs for compound pwiz::identdata::Peptide... Generating docs for compound pwiz::identdata::SearchModification... Generating docs for compound pwiz::identdata::Enzyme... Generating docs for compound pwiz::identdata::Enzymes... Generating docs for compound pwiz::identdata::Residue... Generating docs for compound pwiz::identdata::AmbiguousResidue... Generating docs for compound pwiz::identdata::MassTable... Generating docs for compound pwiz::identdata::Filter... Generating docs for compound pwiz::identdata::TranslationTable... Generating docs for compound pwiz::identdata::DatabaseTranslation... Generating docs for compound pwiz::identdata::SpectrumIdentificationProtocol... Generating docs for compound pwiz::identdata::Measure... Generating docs for compound pwiz::identdata::FragmentArray... Generating docs for compound pwiz::identdata::IonType... Generating docs for compound pwiz::identdata::PeptideEvidence... Generating docs for compound pwiz::identdata::SequenceCollection... Generating docs for compound pwiz::identdata::SpectrumIdentificationItem... Generating docs for compound pwiz::identdata::SpectraData... Generating docs for compound pwiz::identdata::SpectrumIdentificationResult... Generating docs for compound pwiz::identdata::SpectrumIdentificationList... Generating docs for compound pwiz::identdata::SpectrumIdentification... Generating docs for compound pwiz::identdata::ProteinDetectionProtocol... Generating docs for compound pwiz::identdata::PeptideHypothesis... Generating docs for compound pwiz::identdata::ProteinDetectionHypothesis... Generating docs for compound pwiz::identdata::ProteinAmbiguityGroup... Generating docs for compound pwiz::identdata::ProteinDetectionList... Generating docs for compound pwiz::identdata::ProteinDetection... Generating docs for compound pwiz::identdata::AnalysisCollection... Generating docs for compound pwiz::identdata::AnalysisProtocolCollection... Generating docs for compound pwiz::identdata::SourceFile... Generating docs for compound pwiz::identdata::Inputs... Generating docs for compound pwiz::identdata::AnalysisData... Generating docs for compound pwiz::identdata::DataCollection... Generating docs for compound pwiz::identdata::IdentData... Generating docs for compound pwiz::identdata::IdentDataFile... Generating docs for nested compound pwiz::identdata::IdentDataFile::WriteConfig... Generating docs for compound pwiz::identdata::CVMap... Generating docs for compound pwiz::identdata::RegexCVMap... Generating docs for compound pwiz::identdata::StringMatchCVMap... Generating docs for compound pwiz::identdata::CVIDMatchCVMap... Generating docs for compound pwiz::identdata::MascotReader... Generating docs for compound pwiz::identdata::id_p... Generating docs for compound pwiz::identdata::software_p... Generating docs for compound pwiz::identdata::sequence_p... Generating docs for compound pwiz::identdata::seq_p... Generating docs for compound pwiz::identdata::dbsequence_p... Generating docs for compound pwiz::identdata::organization_p... Generating docs for compound pwiz::identdata::person_p... Generating docs for compound pwiz::identdata::Pep2MzIdent... Generating docs for compound pwiz::identdata::Reader... Generating docs for nested compound pwiz::identdata::Reader::Config... Generating docs for compound pwiz::identdata::ReaderFail... Generating docs for compound pwiz::identdata::ReaderList... Generating docs for compound pwiz::identdata::Serializer_mzIdentML... Generating docs for nested compound pwiz::identdata::Serializer_mzIdentML::Config... Generating docs for compound pwiz::identdata::Serializer_pepXML... Generating docs for nested compound pwiz::identdata::Serializer_pepXML::Config... Generating docs for compound pwiz::identdata::PepXMLSpecificity... Generating docs for compound pwiz::identdata::Serializer_protXML... Generating docs for nested compound pwiz::identdata::Serializer_protXML::Config... Generating docs for compound pwiz::identdata::Serializer_Text... Generating docs for nested compound pwiz::identdata::Serializer_Text::Config... Generating docs for compound pwiz::identdata::TextWriter... Generating docs for compound pwiz::identdata::Version... Generating docs for namespace pwiz::identdata::examples Generating docs for namespace pwiz::identdata::IO Generating docs for namespace pwiz::identdata::References Generating docs for namespace pwiz::math Generating docs for compound pwiz::math::LinearLeastSquares... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >... Generating docs for compound pwiz::math::LinearSolver... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_LU >... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_QR >... Generating docs for compound pwiz::math::OrderedPair... Generating docs for compound pwiz::math::OrderedPairContainerRef... Generating docs for compound pwiz::math::Parabola... Generating docs for compound pwiz::math::Stats... Generating docs for namespace pwiz::math::MatchedFilter Generating docs for compound pwiz::math::MatchedFilter::ProductSpace... Generating docs for compound pwiz::math::MatchedFilter::SampledData... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase< Y(*)(X)>... Generating docs for compound pwiz::math::MatchedFilter::Correlation... Generating docs for compound pwiz::math::MatchedFilter::KernelTraits... Generating docs for nested compound pwiz::math::MatchedFilter::KernelTraits::Dummy... Generating docs for namespace pwiz::math::MatchedFilter::details Generating docs for namespace pwiz::math::types Generating docs/build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp:94: warning: Unsupported xml/html tag found for namespace pwiz::minimxml Generating docs for compound pwiz::minimxml::XMLWriter... Generating docs for nested compound pwiz::minimxml::XMLWriter::Attributes... Generating docs for nested compound pwiz::minimxml::XMLWriter::Config... Generating docs for nested compound pwiz::minimxml::XMLWriter::OutputObserver... Generating docs for compound pwiz::minimxml::basic_charcounter... Generating docs for nested compound pwiz::minimxml::basic_charcounter::category... Generating docs for namespace pwiz::minimxml::SAXParser Generating docs for compound pwiz::minimxml::SAXParser::saxstring... Generating docs for compound pwiz::minimxml::SAXParser::Handler... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes::attribute... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Status... Generating docs for namespace pwiz::msdata Generating docs for compound pwiz::msdata::BinaryDataEncoder... Generating docs for nested compound pwiz::msdata::BinaryDataEncoder::Config... Generating docs for compound pwiz::msdata::ChromatogramList_mzML... Generating docs for compound pwiz::msdata::ChromatogramListBase... Generating docs for compound pwiz::msdata::Reader_mzML... Generating docs for compound pwiz::msdata::Reader_mzXML... Generating docs for compound pwiz::msdata::Reader_MGF... Generating docs for compound pwiz::msdata::Reader_MSn... Generating docs for compound pwiz::msdata::Reader_BTDX... Generating docs for compound pwiz::msdata::Reader_mz5... Generating docs for compound pwiz::msdata::DefaultReaderList... Generating docs for compound pwiz::msdata::DiffConfig... Generating docs for compound pwiz::msdata::Index_mzML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromXML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromMzXML... Generating docs for compound pwiz::msdata::LegacyAdapter_Instrument... Generating docs for compound pwiz::msdata::LegacyAdapter_Software... Generating docs for compound pwiz::msdata::MemoryMRUCache... Generating docs for compound pwiz::msdata::FileContent... Generating docs for compound pwiz::msdata::SourceFile... Generating docs for compound pwiz::msdata::Contact... Generating docs for compound pwiz::msdata::FileDescription... Generating docs for compound pwiz::msdata::Sample... Generating docs for compound pwiz::msdata::Component... Generating docs for compound pwiz::msdata::ComponentList... Generating docs for compound pwiz::msdata::Software... Generating docs for compound pwiz::msdata::Target... Generating docs for compound pwiz::msdata::ScanSettings... Generating docs for compound pwiz::msdata::InstrumentConfiguration... Generating docs for compound pwiz::msdata::ProcessingMethod... Generating docs for compound pwiz::msdata::DataProcessing... Generating docs for compound pwiz::msdata::IsolationWindow... Generating docs for compound pwiz::msdata::SelectedIon... Generating docs for compound pwiz::msdata::Activation... Generating docs for compound pwiz::msdata::Precursor... Generating docs for compound pwiz::msdata::Product... Generating docs for compound pwiz::msdata::ScanWindow... Generating docs for compound pwiz::msdata::Scan... Generating docs for compound pwiz::msdata::ScanList... Generating docs for compound pwiz::msdata::BinaryDataArray... Generating docs for compound pwiz::msdata::MZIntensityPair... Generating docs for compound pwiz::msdata::TimeIntensityPair... Generating docs for compound pwiz::msdata::SpectrumIdentity... Generating docs for compound pwiz::msdata::ChromatogramIdentity... Generating docs for compound pwiz::msdata::Spectrum... Generating docs for compound pwiz::msdata::Chromatogram... Generating docs for compound pwiz::msdata::IndexList... Generating docs for compound pwiz::msdata::SpectrumList... Generating docs for compound pwiz::msdata::SpectrumListSimple... Generating docs for compound pwiz::msdata::ChromatogramList... Generating docs for compound pwiz::msdata::ChromatogramListSimple... Generating docs for compound/build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found pwiz::msdata::Run... Generating docs for compound pwiz::msdata::MSData... Generating docs for compound pwiz::msdata::MSDataFile... Generating docs for nested compound pwiz::msdata::MSDataFile::WriteConfig... Generating docs for compound pwiz::msdata::MSDataMerger... Generating docs for compound pwiz::msdata::Reader... Generating docs for nested compound pwiz::msdata::Reader::Config... Generating docs for compound pwiz::msdata::ReaderFail... Generating docs for compound pwiz::msdata::ReaderList... Generating docs for compound pwiz::msdata::Serializer_MGF... Generating docs for compound pwiz::msdata::Serializer_MSn... Generating docs for compound pwiz::msdata::Serializer_mzML... Generating docs for nested compound pwiz::msdata::Serializer_mzML::Config... Generating docs for compound pwiz::msdata::Serializer_mzXML... Generating docs for nested compound pwiz::msdata::Serializer_mzXML::Config... Generating docs for compound pwiz::msdata::SHA1OutputObserver... Generating docs for compound pwiz::msdata::SpectrumInfo... Generating docs for nested compound pwiz::msdata::SpectrumInfo::PrecursorInfo... Generating docs for compound pwiz::msdata::SpectrumIterator... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Config... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Sieve... Generating docs for compound pwiz::msdata::SpectrumList_BTDX... Generating docs for compound pwiz::msdata::SpectrumList_MGF... Generating docs for compound pwiz::msdata::MSnHeader... Generating docs for compound pwiz::msdata::SpectrumList_MSn... Generating docs for compound pwiz::msdata::SpectrumList_mzML... Generating docs for compound pwiz::msdata::SpectrumList_mzXML... Generating docs for nested compound pwiz::msdata::SpectrumList_mzXML::index_not_found... Generating docs for compound pwiz::msdata::SpectrumListBase... Generating docs for compound pwiz::msdata::SpectrumListIonMobilityBase... Generating docs for compound pwiz::msdata::SpectrumListCache... Generating docs for nested compound pwiz::msdata::SpectrumListCache::CacheEntry... Generating docs for compound pwiz::msdata::SpectrumListWrapper... Generating docs for compound pwiz::msdata::SpectrumWorkerThreads... Generating docs for compound pwiz::msdata::TextWriter... Generating docs for compound pwiz::msdata::Version... Generating docs for compound pwiz::msdata::Reader_ABI... Generating docs for compound pwiz::msdata::Reader_ABI_T2D... Generating docs for compound pwiz::msdata::Reader_Agilent... Generating docs for compound pwiz::msdata::Reader_Bruker... Generating docs for compound pwiz::msdata::ExtendedReaderList... Generating docs for compound pwiz::msdata::Reader_Shimadzu... Generating docs for compound pwiz::msdata::Reader_Thermo... Generating docs for compound pwiz::msdata::Reader_UIMF... Generating docs for compound pwiz::msdata::Reader_UNIFI... Generating docs for compound pwiz::msdata::Reader_Waters... Generating docs for namespace pwiz::msdata::detail Generating docs for compound pwiz::msdata::detail::ChromatogramList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI_T2D... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Agilent... Generating docs for compound pwiz::msdata::detail::SpectrumList_Agilent... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Bruker... Generating docs for compound pwiz::msdata::detail::SpectrumList_Bruker... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Shimadzu... Generating docs for compound pwiz::msdata::detail::SpectrumList_Shimadzu... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_UIMF... Generating docs for compound pwiz::msdata::detail::SpectrumList_UNIFI... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Waters... Generating docs for compound pwiz::msdata::detail::SpectrumList/build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:81: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:82: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:84: warning: Found unknown command '@fixedPoint' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:99: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:118: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:119: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:131: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:147: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:148: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:161: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:173: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:174: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:185: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:210: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:211: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:226: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:237: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:238: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:250: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found _Waters... Generating docs for nested compound pwiz::msdata::detail::SpectrumList_Waters::VendorOptions... Generating docs for namespace pwiz::msdata::detail::Bruker Generating docs for namespace pwiz::msdata::detail::Thermo Generating docs for namespace pwiz::msdata::examples Generating docs for namespace pwiz::msdata::id Generating docs for namespace pwiz::msdata::IO Generating docs for namespace pwiz::msdata::MSNumpress Generating docs for namespace pwiz::msdata::References Generating docs for namespace pwiz::peptideid Generating docs for compound pwiz::peptideid::PeptideID... Generating docs for nested compound pwiz::peptideid::PeptideID::Iterator... Generating docs for nested compound pwiz::peptideid::PeptideID::IteratorInternal... Generating docs for nested compound pwiz::peptideid::PeptideID::Location... Generating docs for nested compound pwiz::peptideid::PeptideID::Record... Generating docs for compound pwiz::peptideid::nativeID_less... Generating docs for compound pwiz::peptideid::location_less... Generating docs for compound pwiz::peptideid::FlatRecordBuilder... Generating docs for compound pwiz::peptideid::MSInspectRecordBuilder... Generating docs for compound pwiz::peptideid::PeptideID_flat... Generating docs for compound pwiz::peptideid::PeptideID_pepXml... Generating docs for compound pwiz::peptideid::PeptideIDMap... Generating docs for namespace pwiz::proteome Generating docs for compound pwiz::proteome::DefaultReaderList... Generating docs for compound pwiz::proteome::DiffConfig... Generating docs for compound pwiz::proteome::DigestedPeptide... Generating docs for compound pwiz::proteome::Digestion... Generating docs for nested compound pwiz::proteome::Digestion::Config... Generating docs for nested compound pwiz::proteome::Digestion::const_iterator... Generating docs for compound pwiz::proteome::Modification... Generating docs for compound pwiz::proteome::ModificationList... Generating docs for compound pwiz::proteome::ModificationMap... Generating docs for compound pwiz::proteome::Peptide... Generating docs for compound pwiz::proteome::Fragmentation... Generating docs for compound pwiz::proteome::ProteinListCache... Generating docs for compound pwiz::proteome::ProteinListWrapper... Generating docs for compound pwiz::proteome::Protein... Generating docs for compound pwiz::proteome::IndexList... Generating docs for compound pwiz::proteome::ProteinList... Generating docs for compound pwiz::proteome::ProteinListSimple... Generating docs for compound pwiz::proteome::ProteomeData... Generating docs for compound pwiz::proteome::ProteomeDataFile... Generating docs for nested compound pwiz::proteome::ProteomeDataFile::WriteConfig... Generating docs for compound pwiz::proteome::Reader... Generating docs for compound pwiz::proteome::ReaderFail... Generating docs for compound pwiz::proteome::ReaderList... Generating docs for compound pwiz::proteome::Reader_FASTA... Generating docs for nested compound pwiz::proteome::Reader_FASTA::Config... Generating docs for compound pwiz::proteome::Serializer_FASTA... Generating docs for nested compound pwiz::proteome::Serializer_FASTA::Config... Generating docs for compound pwiz::proteome::TextWriter... Generating docs for compound pwiz::proteome::Version... Generating docs for compound pwiz::proteome::IPIFASTADatabase... Generating docs for nested compound pwiz::proteome::IPIFASTADatabase::Record... Generating docs for namespace pwiz::proteome::AminoAcid Generating docs for namespace pwiz::proteome::AminoAcid::Info Generating docs for compound pwiz::proteome::AminoAcid::Info::Record... Generating docs for namespace pwiz::proteome::examples Generating docs for namespace pwiz::tradata Generating docs for compound pwiz::tradata::DefaultReaderList... Generating docs for compound pwiz::tradata::DiffConfig... Generating docs for compound pwiz::tradata::Reader... Generating docs for compound pwiz::tradata::ReaderFail... Generating docs for compound pwiz::tradata::ReaderList... Generating docs for compound pwiz::tradata::Serializer_traML... Generating docs for compound pwiz::tradata::/build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found TextWriter... Generating docs for compound pwiz::tradata::Contact... Generating docs for compound pwiz::tradata::Publication... Generating docs for compound pwiz::tradata::Software... Generating docs for compound pwiz::tradata::RetentionTime... Generating docs for compound pwiz::tradata::Prediction... Generating docs for compound pwiz::tradata::Evidence... Generating docs for compound pwiz::tradata::Validation... Generating docs for compound pwiz::tradata::Instrument... Generating docs for compound pwiz::tradata::Configuration... Generating docs for compound pwiz::tradata::Interpretation... Generating docs for compound pwiz::tradata::Protein... Generating docs for compound pwiz::tradata::Modification... Generating docs for compound pwiz::tradata::Peptide... Generating docs for compound pwiz::tradata::Compound... Generating docs for compound pwiz::tradata::Precursor... Generating docs for compound pwiz::tradata::Product... Generating docs for compound pwiz::tradata::Transition... Generating docs for compound pwiz::tradata::Target... Generating docs for compound pwiz::tradata::TargetList... Generating docs for compound pwiz::tradata::TraData... Generating docs for compound pwiz::tradata::TraDataFile... Generating docs for nested compound pwiz::tradata::TraDataFile::WriteConfig... Generating docs for compound pwiz::tradata::Version... Generating docs for namespace pwiz::tradata::examples Generating docs for namespace pwiz::tradata::IO Generating docs for namespace pwiz::tradata::References Generating docs for namespace pwiz::util Generating docs for compound pwiz::util::BinaryData... Generating docs for nested compound pwiz::util::BinaryData::const_iterator... Generating docs for nested compound pwiz::util::BinaryData::iterator... Generating docs for compound pwiz::util::CharIndexedVectorIterator... Generating docs for compound pwiz::util::CharIndexedVectorConstIterator... Generating docs for compound pwiz::util::CharIndexedVector... Generating docs for compound pwiz::util::ClickwrapPrompter... Generating docs for compound pwiz::util::Lock... Generating docs for compound pwiz::util::usage_exception... Generating docs for compound pwiz::util::user_error... Generating docs for compound pwiz::util::Image... Generating docs for nested compound pwiz::util::Image::Color... Generating docs for nested compound pwiz::util::Image::Point... Generating docs for compound pwiz::util::IntegerSet... Generating docs for nested compound pwiz::util::IntegerSet::Interval... Generating docs for nested compound pwiz::util::IntegerSet::Iterator... Generating docs for compound pwiz::util::IterationListener... Generating docs for nested compound pwiz::util::IterationListener::UpdateMessage... Generating docs for compound pwiz::util::IterationListenerRegistry... Generating docs for compound pwiz::util::mru_list... Generating docs for compound pwiz::util::MSIHandler... Generating docs for nested compound pwiz::util::MSIHandler::Record... Generating docs for compound pwiz::util::once_flag_proxy... Generating docs for compound pwiz::util::random_access_compressed_ifstream... Generating docs for compound pwiz::util::SHA1SymmetricFilter... Generating docs for compound pwiz::util::SHA1Filter... Generating docs for compound pwiz::util::SHA1_ostream... Generating docs for compound pwiz::util::SHA1Calculator... Generating docs for compound pwiz::util::shared_map... Generating docs for compound pwiz::util::TabHandler... Generating docs for compound pwiz::util::DefaultTabHandler... Generating docs for compound pwiz::util::VectorTabHandler... Generating docs for compound pwiz::util::TabReader... Generating docs for compound pwiz::util::Timer... Generating docs for compound pwiz::util::TestPathPredicate... Generating docs for compound pwiz::util::ReaderTestConfig... Generating docs for compound pwiz::util::virtual_map... Generating docs for namespace pwiz::util::Base64 Generating docs for namespace pwiz::util::env Generating docs for namespace pwiz::vendor_api Generating docs for namespace pwiz::vendor_api::Bruker Generating docs for namespace ralab Generating d/build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp:40: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end, std::vector< T > &res) is not documented: parameter 'end' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp:63: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end) is not documented: parameter 'end' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:58: warning: The following parameters of ralab::base::base::interpolate_linear(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:83: warning: The following parameters of ralab::base::base::interpolate_cosine(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:105: warning: The following parameters of ralab::base::base::interpolate_cubic(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:130: warning: The following parameters of ralab::base::base::interpolate_Hermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, double tension=0, double bias=0, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:199: warning: The following parameters of ralab::base::base::utilities::interpolateCubicHermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, TFunctor &functor, int start_index=0) are not documented: parameter 'begY' parameter 'endY' parameter 'begX' parameter 'endX' parameter 'start_index' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:283: warning: The following parameters of ralab::base::base::utilities::interpolateLinearCosine(YInputIterator y_p, YInputIterator endY, XInputIterator x_p, XInputIterator endX, OutputIterator out_p, TFunctor &interpolator, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:149: warning: The following parameter of ralab::base::base::utilities::HermiteInterpolate::HermiteInterpolate(TReal tension, TReal bias, TReal epsilon=std::numeric_limits< TReal >::epsilon()) is not documented: parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filter.hpp:49: warning: The following parameters of ralab::base::filter::filter_sequence(TIterator dataBeg, TIterator dataEnd, TFilterIterator filterBeg, size_t fsize, TOutputIterator resBeg, bool circular=false, uint32_t sides=2) are not documented: parameter 'dataEnd' parameter 'fsize' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfilter.hpp:102: warning: The following parameter of ralab::base::filter::getGaussian1DerFilterQuantile(std::vector< TReal > &gauss1d, TReal fwhm=20, TReal quantile=0.1) is not documented: parameter 'quantile' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp:39: warning: The following parameters of ralab::base::filter::utilities::prepareData(TIterator dataBeg, TIterator dataEnd, size_t fsize, TContainer &res, bool mirror=false) are not documented: parameter 'dataBeg' parameter 'dataEnd' parameter 'fsize' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:81: warning: The following parameter of ralab::base::ms::LocalMinPeakArea::LocalMinPeakArea(TReal integwith, TReal threshold=.1) is not documented: parameter 'threshold' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:177: warning: The following parameter of ralab::base::ms::PeakPicker::PeakPicker(TReal resolution, std::pair< TReal, TReal > &massrange, TReal width=2., TReal intwidth=2., TReal intensitythreshold=10., bool area=true, uint32_t maxnumberofpeaks=0, double c2d=1e-5) is not documented: parameter 'intensitythreshold' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepicker.hpp:49: warning: The following parameters of ralab::base::ms::SimplePicker::operator()(Tit beg, Tit end, Outit zerocrossings, size_t nzercross, std::ptrdiff_t lag=2) are not documented: parameter 'beg' parameter 'end' parameter 'zerocrossings' parameter 'lag' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp:36: warning: Found unknown command '\given' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp:83: warning: Found unknown command '\Assignment' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp:96: warning: The following parameters of ralab::base::resample::Bucket1D::operator()(InputIterator beg, InputIterator end, std::vector< std::pair< std::size_t, std::size_t > > &bucketPairs) are not documented: parameter 'end' parameter 'bucketPairs' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/scale.hpp:77: warning: The following parameters of ralab::base::stats::scale(InputIterator begin, InputIterator end, std::pair< typename std::iterator_traits< InputIterator >::value_type, typename std::iterator_traits< InputIterator >::value_type > &scaled, bool center=true, bool scale=true) are not documented: parameter 'begin' parameter 'end' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' ocs for namespace ralab::base Generating docs for namespace ralab::base::base Generating docs for namespace ralab::base::base::utilities Generating docs for compound ralab::base::base::utilities::SeqPlus... Generating docs for compound ralab::base::base::utilities::SeqMinus... Generating docs for compound ralab::base::base::utilities::LinearInterpolate... Generating docs for compound ralab::base::base::utilities::CosineInterpolate... Generating docs for compound ralab::base::base::utilities::CubicInterpolate... Generating docs for compound ralab::base::base::utilities::HermiteInterpolate... Generating docs for namespace ralab::base::filter Generating docs for namespace ralab::base::filter::utilities Generating docs for compound ralab::base::filter::utilities::Gauss... Generating docs for compound ralab::base::filter::utilities::Gauss_1deriv... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat2... Generating docs for namespace ralab::base::ms Generating docs for compound ralab::base::ms::SimplePeakArea... Generating docs for compound ralab::base::ms::LocalMinPeakArea... Generating docs for compound ralab::base::ms::PeakPicker... Generating docs for compound ralab::base::ms::SimplePicker... Generating docs for namespace ralab::base::resample Generating docs for compound ralab::base::resample::Bin1D... Generating docs for compound ralab::base::resample::Bucket1D... Generating docs for compound ralab::base::resample::Convert2Dense... Generating docs for compound ralab::base::resample::SquareRoot... Generating docs for compound ralab::base::resample::SamplingWith... Generating docs for compound ralab::base::resample::PPMCompFunctor... Generating docs for compound ralab::base::resample::DaCompFunctor... Generating docs for compound ralab::base::resample::FTMSCompFunctor... Generating docs for namespace ralab::base::resample::utilities Generating docs for compound ralab::base::resample::utilities::meanfunctor... Generating docs for namespace ralab::base::stats Generating docs for compound ralab::base::stats::NthPower... Generating docs for namespace ralab::base::utils Generating docs for namespace ralab::constants Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 33731/65536 hits=341712 misses=37780 finished... rm -f doc/dox/html/jquery.js touch build-indep-stamp fakeroot debian/rules binary "---------------------------------------" DEB_HOST_GNU_TYPE: x86_64-linux-gnu DEB_BUILD_GNU_TYPE x86_64-linux-gnu DEB_BUILD_OPTIONS: buildinfo=+all reproducible=+all,-fixfilepath parallel=15 DEB_HOST_MULTIARCH: x86_64-linux-gnu "---------------------------------------" entering the configure target dh_testdir dh_prep -a rm -f -- debian/libpwiz-dev.substvars debian/libpwiz3.substvars debian/libpwiz-tools.substvars rm -fr -- debian/.debhelper/generated/libpwiz-dev/ debian/libpwiz-dev/ debian/tmp/ debian/.debhelper/generated/libpwiz3/ debian/libpwiz3/ debian/.debhelper/generated/libpwiz-tools/ debian/libpwiz-tools/ mkdir -p /build/libpwiz-3.0.18342/debian/build cp -rpf autotools libraries pwiz pwiz_tools /build/libpwiz-3.0.18342/debian/build echo "BOOST_LDPATH = /usr/lib/x86_64-linux-gnu" > /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp cat /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am >> /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/usr/include/eigen3/Eigen"|' /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/build/libpwiz-3.0.18342/debian/build/libraries/Eigen"|' /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp sed -i '/^AM_CPPFLAGS/ s|$| -I "/build/libpwiz-3.0.18342/debian/build/libraries/libsvm-3.0"|' /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp mv /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am-tmp /build/libpwiz-3.0.18342/debian/build/autotools/Makefile.am rm -f /build/libpwiz-3.0.18342/debian/build/libraries/boost_aux/boost/interprocess/detail/* cd /build/libpwiz-3.0.18342/debian/build/autotools && autoreconf --force -i && cd .. && \ autotools/configure --prefix=/usr --build=x86_64-linux-gnu --host=x86_64-linux-gnu libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in '.'. libtoolize: copying file './libtool.m4' libtoolize: copying file './ltoptions.m4' libtoolize: copying file './ltsugar.m4' libtoolize: copying file './ltversion.m4' libtoolize: copying file './lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. configure.ac:11: installing './compile' configure.ac:6: installing './missing' Makefile.am: installing './depcomp' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of x86_64-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of x86_64-linux-gnu-gcc... (cached) gcc3 checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for memory.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for int32_t... yes checking for int64_t... yes checking for off_t... yes checking for C/C++ restrict keyword... __restrict checking for size_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for ptrdiff_t... yes checking for error_at_line... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking whether time.h and sys/time.h may both be included... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for alarm... yes checking for working mktime... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for atexit... yes checking for floor... no checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for modf... yes checking for pow... no checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for strtoull... yes checking for Boost headers version >= 1.43.0... yes checking for Boost's header version... 1_74 checking for the flags needed to use pthreads... -pthread checking for the toolset name used by Boost for x86_64-linux-gnu-g++... configure: WARNING: could not figure out which toolset name to use for x86_64-linux-gnu-g++ checking boost/system/error_code.hpp usability... yes checking boost/system/error_code.hpp presence... yes checking for boost/system/error_code.hpp... yes checking for the Boost system library... yes checking boost/thread.hpp usability... yes checking boost/thread.hpp presence... yes checking for boost/thread.hpp... yes checking for the Boost thread library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/filesystem/path.hpp usability... yes checking boost/filesystem/path.hpp presence... yes checking for boost/filesystem/path.hpp... yes checking for the Boost filesystem library... (cached) yes checking boost/regex.hpp usability... yes checking boost/regex.hpp presence... yes checking for boost/regex.hpp... yes checking for the Boost regex library... (cached) yes checking boost/archive/text_oarchive.hpp usability... yes checking boost/archive/text_oarchive.hpp presence... yes checking for boost/archive/text_oarchive.hpp... yes checking for the Boost serialization library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/iostreams/device/file_descriptor.hpp usability... yes checking boost/iostreams/device/file_descriptor.hpp presence... yes checking for boost/iostreams/device/file_descriptor.hpp... yes checking for the Boost iostreams library... (cached) yes checking boost/date_time/posix_time/posix_time.hpp usability... yes checking boost/date_time/posix_time/posix_time.hpp presence... yes checking for boost/date_time/posix_time/posix_time.hpp... yes checking for the Boost date_time library... (cached) yes checking boost/program_options.hpp usability... yes checking boost/program_options.hpp presence... yes checking for boost/program_options.hpp... yes checking for the Boost program_options library... (cached) yes checking for boost/system/error_code.hpp... (cached) yes checking for the Boost system library... (cached) yes checking boost/chrono.hpp usability... yes checking boost/chrono.hpp presence... yes checking for boost/chrono.hpp... yes checking for the Boost chrono library... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands entering the configure-stamp target touch configure-stamp entering the build-arch-stamp target cd /build/libpwiz-3.0.18342/debian/build && \ VERBOSE=1 BOOST_LDPATH=/usr/lib/x86_64-linux-gnu /usr/bin/make && \ VERBOSE=1 DESTDIR=/build/libpwiz-3.0.18342/debian/build /usr/bin/make install make[1]: Entering directory '/build/libpwiz-3.0.18342/debian/build' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/build/libpwiz-3.0.18342/debian/build' make[1]: Entering directory '/build/libpwiz-3.0.18342/debian/build' make[2]: Entering directory '/build/libpwiz-3.0.18342/debian/build' /bin/mkdir -p '/build/libpwiz-3.0.18342/debian/build/usr/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c libpwiz.la '/build/libpwiz-3.0.18342/debian/build/usr/lib' libtool: install: /usr/bin/install -c .libs/libpwiz.so.3.0.0 /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.so.3.0.0 libtool: install: (cd /build/libpwiz-3.0.18342/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so.3 || { rm -f libpwiz.so.3 && ln -s libpwiz.so.3.0.0 libpwiz.so.3; }; }) libtool: install: (cd /build/libpwiz-3.0.18342/debian/build/usr/lib && { ln -s -f libpwiz.so.3.0.0 libpwiz.so || { rm -f libpwiz.so && ln -s libpwiz.so.3.0.0 libpwiz.so; }; }) libtool: install: /usr/bin/install -c .libs/libpwiz.lai /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.la libtool: install: /usr/bin/install -c .libs/libpwiz.a /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.a libtool: install: chmod 644 /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.a libtool: install: x86_64-linux-gnu-ranlib /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.a libtool: warning: remember to run 'libtool --finish /usr/lib' /bin/mkdir -p '/build/libpwiz-3.0.18342/debian/build/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c txt2mzml msconvert mscat hello_analyzer_2 idconvert write_example_files hello_msdata write_mzid_example_files hello_analyzer write_proteome_example_files pepcat write_traml_example_files '/build/libpwiz-3.0.18342/debian/build/usr/bin' libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/txt2mzml /build/libpwiz-3.0.18342/debian/build/usr/bin/txt2mzml libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/msconvert /build/libpwiz-3.0.18342/debian/build/usr/bin/msconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/mscat /build/libpwiz-3.0.18342/debian/build/usr/bin/mscat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer_2 /build/libpwiz-3.0.18342/debian/build/usr/bin/hello_analyzer_2 libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/idconvert /build/libpwiz-3.0.18342/debian/build/usr/bin/idconvert libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_msdata /build/libpwiz-3.0.18342/debian/build/usr/bin/hello_msdata libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_mzid_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_mzid_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/hello_analyzer /build/libpwiz-3.0.18342/debian/build/usr/bin/hello_analyzer libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_proteome_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_proteome_example_files libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/pepcat /build/libpwiz-3.0.18342/debian/build/usr/bin/pepcat libtool: warning: 'libpwiz.la' has not been installed in '/usr/lib' libtool: install: /usr/bin/install -c .libs/write_traml_example_files /build/libpwiz-3.0.18342/debian/build/usr/bin/write_traml_example_files make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/build/libpwiz-3.0.18342/debian/build' make[1]: Leaving directory '/build/libpwiz-3.0.18342/debian/build' Removing the RPATH datum from the binaries. sh debian/remove-rpath-from-binaries.sh /build/libpwiz-3.0.18342 sh debian/make-included-headers-hierarchy.sh .pc/gcc-boost-fail-cast-tribool-to-bool-force-it.patch/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz_tools/common/FullReaderList.hpp debian/build/pwiz_tools/common/MSDataAnalyzerApplication.hpp debian/build/pwiz/Version.hpp debian/build/pwiz/data/proteome/Reader.hpp debian/build/pwiz/data/proteome/examples.hpp debian/build/pwiz/data/proteome/ProteinListCache.hpp debian/build/pwiz/data/proteome/ProteomeDataFile.hpp debian/build/pwiz/data/proteome/Digestion.hpp debian/build/pwiz/data/proteome/Reader_FASTA.hpp debian/build/pwiz/data/proteome/Serializer_FASTA.hpp debian/build/pwiz/data/proteome/Peptide.hpp debian/build/pwiz/data/proteome/AminoAcid.hpp debian/build/pwiz/data/proteome/Version.hpp debian/build/pwiz/data/proteome/ProteinListWrapper.hpp debian/build/pwiz/data/proteome/Diff.hpp debian/build/pwiz/data/proteome/TextWriter.hpp debian/build/pwiz/data/proteome/Modification.hpp debian/build/pwiz/data/proteome/ProteomeData.hpp debian/build/pwiz/data/proteome/DefaultReaderList.hpp debian/build/pwiz/data/common/diff_std.hpp debian/build/pwiz/data/common/Index.hpp debian/build/pwiz/data/common/BinaryIndexStream.hpp debian/build/pwiz/data/common/CVTranslator.hpp debian/build/pwiz/data/common/cv.hpp debian/build/pwiz/data/common/obo.hpp debian/build/pwiz/data/common/MemoryIndex.hpp debian/build/pwiz/data/common/Unimod.hpp debian/build/pwiz/data/common/ParamTypes.hpp debian/build/pwiz/data/tradata/Reader.hpp debian/build/pwiz/data/tradata/examples.hpp debian/build/pwiz/data/tradata/Version.hpp debian/build/pwiz/data/tradata/References.hpp debian/build/pwiz/data/tradata/Diff.hpp debian/build/pwiz/data/tradata/TextWriter.hpp debian/build/pwiz/data/tradata/IO.hpp debian/build/pwiz/data/tradata/TraData.hpp debian/build/pwiz/data/tradata/TraDataFile.hpp debian/build/pwiz/data/tradata/Serializer_traML.hpp debian/build/pwiz/data/tradata/DefaultReaderList.hpp debian/build/pwiz/data/misc/FrequencyDataTestData.hpp debian/build/pwiz/data/misc/SampleDatum.hpp debian/build/pwiz/data/misc/PeakData.hpp debian/build/pwiz/data/misc/CalibrationParameters.hpp debian/build/pwiz/data/misc/MinimumPepXML.hpp debian/build/pwiz/data/misc/FrequencyData.hpp debian/build/pwiz/data/identdata/TextWriter.hpp debian/build/pwiz/data/identdata/Serializer_Text.hpp debian/build/pwiz/data/identdata/IdentData.hpp debian/build/pwiz/data/identdata/Reader.hpp debian/build/pwiz/data/identdata/Pep2MzIdent.hpp debian/build/pwiz/data/identdata/examples.hpp debian/build/pwiz/data/identdata/MzidPredicates.hpp debian/build/pwiz/data/identdata/DelimWriter.hpp debian/build/pwiz/data/identdata/KwCVMap.hpp debian/build/pwiz/data/identdata/Serializer_protXML.hpp debian/build/pwiz/data/identdata/Version.hpp debian/build/pwiz/data/identdata/DelimReader.hpp debian/build/pwiz/data/identdata/MascotReader.hpp debian/build/pwiz/data/identdata/References.hpp debian/build/pwiz/data/identdata/IdentDataFile.hpp debian/build/pwiz/data/identdata/Serializer_mzid.hpp debian/build/pwiz/data/identdata/Diff.hpp debian/build/pwiz/data/identdata/IO.hpp debian/build/pwiz/data/identdata/Serializer_pepXML.hpp debian/build/pwiz/data/identdata/DefaultReaderList.hpp debian/build/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp debian/build/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp debian/build/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp debian/build/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp debian/build/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp debian/build/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp debian/build/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp debian/build/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp debian/build/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp debian/build/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp debian/build/pwiz/data/vendor_readers/ExtendedReaderList.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp debian/build/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp debian/build/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp debian/build/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp debian/build/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp debian/build/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp debian/build/pwiz/data/msdata/LegacyAdapter.hpp debian/build/pwiz/data/msdata/Reader.hpp debian/build/pwiz/data/msdata/SpectrumInfo.hpp debian/build/pwiz/data/msdata/MSDataFile.hpp debian/build/pwiz/data/msdata/SpectrumList_mzXML.hpp debian/build/pwiz/data/msdata/SpectrumList_mzML.hpp debian/build/pwiz/data/msdata/examples.hpp debian/build/pwiz/data/msdata/Serializer_MGF.hpp debian/build/pwiz/data/msdata/MSData.hpp debian/build/pwiz/data/msdata/SpectrumList_BTDX.hpp debian/build/pwiz/data/msdata/ChromatogramList_mzML.hpp debian/build/pwiz/data/msdata/SpectrumList_MSn.hpp debian/build/pwiz/data/msdata/Serializer_mzML.hpp debian/build/pwiz/data/msdata/SpectrumIterator.hpp debian/build/pwiz/data/msdata/Index_mzML.hpp debian/build/pwiz/data/msdata/Serializer_MSn.hpp debian/build/pwiz/data/msdata/Version.hpp debian/build/pwiz/data/msdata/BinaryDataEncoder.hpp debian/build/pwiz/data/msdata/References.hpp debian/build/pwiz/data/msdata/Serializer_mzXML.hpp debian/build/pwiz/data/msdata/Diff.hpp debian/build/pwiz/data/msdata/TextWriter.hpp debian/build/pwiz/data/msdata/SpectrumListCache.hpp debian/build/pwiz/data/msdata/MSNumpress.hpp debian/build/pwiz/data/msdata/IO.hpp debian/build/pwiz/data/msdata/ChromatogramListBase.hpp debian/build/pwiz/data/msdata/SpectrumListBase.hpp debian/build/pwiz/data/msdata/SHA1OutputObserver.hpp debian/build/pwiz/data/msdata/SpectrumList_MGF.hpp debian/build/pwiz/data/msdata/MemoryMRUCache.hpp debian/build/pwiz/data/msdata/SpectrumListWrapper.hpp debian/build/pwiz/data/msdata/SpectrumWorkerThreads.hpp debian/build/pwiz/data/msdata/MSDataMerger.hpp debian/build/pwiz/data/msdata/DefaultReaderList.hpp debian/build/pwiz/utility/proteome/IPIFASTADatabase.hpp debian/build/pwiz/utility/chemistry/Ion.hpp debian/build/pwiz/utility/chemistry/IsotopeTable.hpp debian/build/pwiz/utility/chemistry/Chemistry.hpp debian/build/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp debian/build/pwiz/utility/chemistry/MZTolerance.hpp debian/build/pwiz/utility/chemistry/IsotopeCalculator.hpp debian/build/pwiz/utility/chemistry/ChemistryData.hpp debian/build/pwiz/utility/misc/Container.hpp debian/build/pwiz/utility/misc/BinaryData.hpp debian/build/pwiz/utility/misc/SHA1Calculator.hpp debian/build/pwiz/utility/misc/mru_list.hpp debian/build/pwiz/utility/misc/almost_equal.hpp debian/build/pwiz/utility/misc/Image.hpp debian/build/pwiz/utility/misc/Singleton.hpp debian/build/pwiz/utility/misc/shared_map.hpp debian/build/pwiz/utility/misc/Std.hpp debian/build/pwiz/utility/misc/MSIHandler.hpp debian/build/pwiz/utility/misc/Exception.hpp debian/build/pwiz/utility/misc/Once.hpp debian/build/pwiz/utility/misc/pinned_gcroot.h debian/build/pwiz/utility/misc/IntegerSet.hpp debian/build/pwiz/utility/misc/IterationListener.hpp debian/build/pwiz/utility/misc/TabReader.hpp debian/build/pwiz/utility/misc/Stream.hpp debian/build/pwiz/utility/misc/Filesystem.hpp debian/build/pwiz/utility/misc/cpp_cli_utilities.hpp debian/build/pwiz/utility/misc/Timer.hpp debian/build/pwiz/utility/misc/Base64.hpp debian/build/pwiz/utility/misc/CharIndexedVector.hpp debian/build/pwiz/utility/misc/random_access_compressed_ifstream.hpp debian/build/pwiz/utility/misc/ClickwrapPrompter.hpp debian/build/pwiz/utility/misc/endian.hpp debian/build/pwiz/utility/misc/SHA1_ostream.hpp debian/build/pwiz/utility/misc/Export.hpp debian/build/pwiz/utility/misc/virtual_map.hpp debian/build/pwiz/utility/misc/DateTime.hpp debian/build/pwiz/utility/misc/String.hpp debian/build/pwiz/utility/misc/Environment.hpp debian/build/pwiz/utility/misc/VendorReaderTestHarness.hpp debian/build/pwiz/utility/misc/optimized_lexical_cast.hpp debian/build/pwiz/utility/misc/unit.hpp debian/build/pwiz/utility/misc/SHA1.h debian/build/pwiz/utility/findmf/base/ms/simplepicker.hpp debian/build/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp debian/build/pwiz/utility/findmf/base/filter/gaussfilter.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp debian/build/pwiz/utility/findmf/base/filter/utilities/gauss.hpp debian/build/pwiz/utility/findmf/base/filter/filter.hpp debian/build/pwiz/utility/findmf/base/resample/breakspec.hpp debian/build/pwiz/utility/findmf/base/resample/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/convert2dense.hpp debian/build/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp debian/build/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp debian/build/pwiz/utility/findmf/base/resample/bucket1d.hpp debian/build/pwiz/utility/findmf/base/resample/bin1d.hpp debian/build/pwiz/utility/findmf/base/base/base.hpp debian/build/pwiz/utility/findmf/base/base/copyif.hpp debian/build/pwiz/utility/findmf/base/base/utilities/base.hpp debian/build/pwiz/utility/findmf/base/base/utilities/interpolation.hpp debian/build/pwiz/utility/findmf/base/base/cumsum.hpp debian/build/pwiz/utility/findmf/base/base/diff.hpp debian/build/pwiz/utility/findmf/base/base/scale.hpp debian/build/pwiz/utility/findmf/base/base/constants.hpp debian/build/pwiz/utility/findmf/base/base/interpolate.hpp debian/build/pwiz/utility/math/MatchedFilter.hpp debian/build/pwiz/utility/math/LinearSolver.hpp debian/build/pwiz/utility/math/Stats.hpp debian/build/pwiz/utility/math/MatrixInverse.hpp debian/build/pwiz/utility/math/LinearLeastSquares.hpp debian/build/pwiz/utility/math/HouseholderQR.hpp debian/build/pwiz/utility/math/Types.hpp debian/build/pwiz/utility/math/OrderedPair.hpp debian/build/pwiz/utility/math/round.hpp debian/build/pwiz/utility/math/Parabola.hpp debian/build/pwiz/utility/math/qr.hpp debian/build/pwiz/utility/math/erf.hpp debian/build/pwiz/utility/minimxml/XMLWriter.hpp debian/build/pwiz/utility/minimxml/SAXParser.hpp debian/build/pwiz/analysis/demux/DemuxDebugWriter.hpp debian/build/pwiz/analysis/demux/DemuxDebugReader.hpp debian/build/pwiz/analysis/demux/CubicHermiteSpline.hpp debian/build/pwiz/analysis/demux/EnumConstantNotPresentException.hpp debian/build/pwiz/analysis/demux/PrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/IInterpolation.hpp debian/build/pwiz/analysis/demux/IDemultiplexer.hpp debian/build/pwiz/analysis/demux/OverlapDemultiplexer.hpp debian/build/pwiz/analysis/demux/SpectrumPeakExtractor.hpp debian/build/pwiz/analysis/demux/MatrixIO.hpp debian/build/pwiz/analysis/demux/MSXDemultiplexer.hpp debian/build/pwiz/analysis/demux/IPrecursorMaskCodec.hpp debian/build/pwiz/analysis/demux/DemuxHelpers.hpp debian/build/pwiz/analysis/demux/DemuxSolver.hpp debian/build/pwiz/analysis/demux/DemuxTypes.hpp debian/build/pwiz/analysis/common/CwtPeakDetector.hpp debian/build/pwiz/analysis/common/LocalMaximumPeakDetector.hpp debian/build/pwiz/analysis/common/Smoother.hpp debian/build/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp debian/build/pwiz/analysis/common/ZeroSampleFiller.hpp debian/build/pwiz/analysis/common/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/common/PeakDetector.hpp debian/build/pwiz/analysis/common/DataFilter.hpp debian/build/pwiz/analysis/common/WhittakerSmoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp debian/build/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp debian/build/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp debian/build/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp debian/build/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp debian/build/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp debian/build/pwiz/analysis/peakdetect/PeakFitter.hpp debian/build/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp debian/build/pwiz/analysis/peakdetect/PeakFinder.hpp debian/build/pwiz/analysis/peakdetect/PeakExtractor.hpp debian/build/pwiz/analysis/peakdetect/FeatureModeler.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp debian/build/pwiz/analysis/peakdetect/Noise.hpp debian/build/pwiz/analysis/peakdetect/MZRTField.hpp debian/build/pwiz/analysis/peakdetect/PeakelPicker.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp debian/build/pwiz/analysis/peakdetect/PeakelGrower.hpp debian/build/pwiz/analysis/peakdetect/FeatureDetector.hpp debian/build/pwiz/analysis/proteome_processing/ProteinListFactory.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp debian/build/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp debian/build/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp debian/build/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp debian/build/pwiz/analysis/Version.hpp debian/build/pwiz/analysis/passive/RegionAnalyzer.hpp debian/build/pwiz/analysis/passive/MSDataCache.hpp debian/build/pwiz/analysis/passive/SpectrumTable.hpp debian/build/pwiz/analysis/passive/TabularConfig.hpp debian/build/pwiz/analysis/passive/MSDataAnalyzer.hpp debian/build/pwiz/analysis/passive/RegionSlice.hpp debian/build/pwiz/analysis/passive/MetadataReporter.hpp debian/build/pwiz/analysis/passive/PepXMLCat.hpp debian/build/pwiz/analysis/passive/SpectrumBinaryData.hpp debian/build/pwiz/analysis/passive/RegionTIC.hpp debian/build/pwiz/analysis/passive/RunSummary.hpp debian/build/pwiz/analysis/passive/RegionSIC.hpp debian/build/pwiz/analysis/peptideid/PeptideID.hpp debian/build/pwiz/analysis/peptideid/PeptideIDMap.hpp debian/build/pwiz/analysis/peptideid/PeptideID_pepXML.hpp debian/build/pwiz/analysis/peptideid/PeptideID_flat.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilter.hpp debian/build/pwiz/analysis/frequency/MagnitudeLorentzianTestData.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimator.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianParameters.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzianEstimator.hpp debian/build/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp debian/build/pwiz/analysis/frequency/DerivativeTest.hpp debian/build/pwiz/analysis/frequency/ParametrizedFunction.hpp debian/build/pwiz/analysis/frequency/TruncatedLorentzian.hpp debian/build/pwiz/analysis/frequency/PeakDetector.hpp debian/build/pwiz/analysis/frequency/ParameterEstimator.hpp debian/build/pwiz/analysis/frequency/PeakDetectorNaive.hpp debian/build/pwiz/analysis/frequency/PeakDetectorMatchedFilterTestData.hpp debian/build/libraries/boost_aux/tools/bcp/bcp_imp.hpp debian/build/libraries/boost_aux/tools/bcp/fileview.hpp debian/build/libraries/boost_aux/tools/bcp/licence_info.hpp debian/build/libraries/boost_aux/tools/bcp/bcp.hpp debian/build/libraries/boost_aux/boost/iostreams/filter/base64.hpp debian/build/libraries/boost_aux/boost/iostreams/arbitrary_positional_facade.hpp debian/build/libraries/boost_aux/boost/nowide/args.hpp debian/build/libraries/boost_aux/boost/nowide/cstdio.hpp debian/build/libraries/boost_aux/boost/nowide/fstream.hpp debian/build/libraries/boost_aux/boost/nowide/stackstring.hpp debian/build/libraries/boost_aux/boost/nowide/cenv.hpp debian/build/libraries/boost_aux/boost/nowide/system.hpp debian/build/libraries/boost_aux/boost/nowide/iostream.hpp debian/build/libraries/boost_aux/boost/nowide/filebuf.hpp debian/build/libraries/boost_aux/boost/nowide/cstdlib.hpp debian/build/libraries/boost_aux/boost/nowide/config.hpp debian/build/libraries/boost_aux/boost/nowide/windows.hpp debian/build/libraries/boost_aux/boost/nowide/convert.hpp debian/build/libraries/boost_aux/boost/enum/base.hpp debian/build/libraries/boost_aux/boost/enum/macros.hpp debian/build/libraries/boost_aux/boost/enum/iterator.hpp debian/build/libraries/boost_aux/boost/enum/bitfield.hpp debian/build/libraries/boost_aux/boost/enum.hpp debian/build/libraries/boost_aux/boost/utility/singleton.hpp debian/build/libraries/boost_aux/boost/utility/mutexed_singleton.hpp debian/build/libraries/boost_aux/boost/utility/thread_specific_singleton.hpp debian/build/libraries/boost_aux/boost/utility/detail/restricted.hpp debian/build/libraries/boost_aux/boost/utility/detail/singleton_manager.hpp debian/build/libraries/boost_aux/boost/utility/detail/member_dereference.hpp debian/build/libraries/boost_aux/boost/foreach_field.hpp debian/build/libraries/doctest.h debian/build/libraries/CSpline/CSpline.h debian/build/libraries/Eigen/nnls.h debian/build/libraries/libsvm-3.0/svm.h doc/dox/mainpage.hpp docbook-to-man debian/msconvert.sgml > debian/msconvert.1 docbook-to-man debian/idconvert.sgml > debian/idconvert.1 docbook-to-man debian/mscat.sgml > debian/mscat.1 docbook-to-man debian/txt2mzml.sgml > debian/txt2mzml.1 touch build-arch-stamp dh_testdir -a dh_testroot -a dh_link install -d debian/libpwiz-dev/usr/lib rm -f debian/libpwiz-dev/usr/lib/libpwiz.so ln -s libpwiz.so.3.0.0 debian/libpwiz-dev/usr/lib/libpwiz.so install -d debian/libpwiz3/usr/lib rm -f debian/libpwiz3/usr/lib/libpwiz.so.3 ln -s libpwiz.so.3.0.0 debian/libpwiz3/usr/lib/libpwiz.so.3 dh_installchangelogs -a install -d debian/libpwiz-tools/usr/share/doc/libpwiz-tools install -p -m0644 debian/changelog debian/libpwiz-tools/usr/share/doc/libpwiz-tools/changelog.Debian install -d debian/libpwiz-dev/usr/share/doc/libpwiz-dev install -p -m0644 debian/changelog debian/libpwiz-dev/usr/share/doc/libpwiz-dev/changelog.Debian install -d debian/libpwiz3/usr/share/doc/libpwiz3 install -p -m0644 debian/changelog debian/libpwiz3/usr/share/doc/libpwiz3/changelog.Debian dh_installdocs -a install -d debian/.debhelper/generated/libpwiz-dev install -p -m0644 debian/README.Debian debian/libpwiz-dev/usr/share/doc/libpwiz-dev/README.Debian install -p -m0644 debian/copyright debian/libpwiz-dev/usr/share/doc/libpwiz-dev/copyright install -d debian/.debhelper/generated/libpwiz3 install -p -m0644 debian/copyright debian/libpwiz3/usr/share/doc/libpwiz3/copyright install -d debian/.debhelper/generated/libpwiz-tools install -p -m0644 debian/copyright debian/libpwiz-tools/usr/share/doc/libpwiz-tools/copyright install -d debian/.debhelper/generated/libpwiz-doc dh_install -a install -d debian/libpwiz-dev/usr/include/ cp --reflink=auto -a ./debian/includes/proteowizard debian/libpwiz-dev/usr/include// cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.a debian/libpwiz-dev/usr/lib/ cp --reflink=auto -a ./debian/build/usr/lib/libpwiz.so.3.0.0 debian/libpwiz3/usr/lib/ install -d debian/libpwiz3/usr/share/doc/libpwiz3/example-files cp --reflink=auto -a ./pwiz_tools/examples/hello_analyzer.cpp ./pwiz_tools/examples/hello_analyzer_2.cpp ./pwiz_tools/examples/hello_msdata.cpp ./pwiz_tools/examples/mscat.cpp ./pwiz_tools/examples/txt2mzml.cpp ./pwiz_tools/examples/write_example_files.cpp ./pwiz_tools/examples/write_mzid_example_files.cpp ./pwiz_tools/examples/write_proteome_example_files.cpp ./pwiz_tools/examples/write_traml_example_files.cpp debian/libpwiz3/usr/share/doc/libpwiz3/example-files/ install -d debian/libpwiz-tools/usr/bin cp --reflink=auto -a ./debian/build/usr/bin/idconvert ./debian/build/usr/bin/mscat ./debian/build/usr/bin/msconvert ./debian/build/usr/bin/txt2mzml debian/libpwiz-tools/usr/bin/ dh_installmenu -a dh_installman -a install -d debian/libpwiz3/usr/share/man/man3/ install -p -m0644 ./debian/libpwiz.3 debian/libpwiz3/usr/share/man/man3/libpwiz.3 install -d debian/libpwiz-tools/usr/share/man/man1/ install -p -m0644 ./debian/msconvert.1 debian/libpwiz-tools/usr/share/man/man1/msconvert.1 install -p -m0644 ./debian/idconvert.1 debian/libpwiz-tools/usr/share/man/man1/idconvert.1 install -p -m0644 ./debian/mscat.1 debian/libpwiz-tools/usr/share/man/man1/mscat.1 install -p -m0644 ./debian/txt2mzml.1 debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz3/usr/share/man/man3/libpwiz.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/idconvert.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/mscat.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/msconvert.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 mv debian/libpwiz-tools/usr/share/man/man1/msconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/msconvert.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/msconvert.1 mv debian/libpwiz-tools/usr/share/man/man1/mscat.1.dh-new debian/libpwiz-tools/usr/share/man/man1/mscat.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/mscat.1 mv debian/libpwiz3/usr/share/man/man3/libpwiz.3.dh-new debian/libpwiz3/usr/share/man/man3/libpwiz.3 chmod 0644 -- debian/libpwiz3/usr/share/man/man3/libpwiz.3 mv debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1.dh-new debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/txt2mzml.1 mv debian/libpwiz-tools/usr/share/man/man1/idconvert.1.dh-new debian/libpwiz-tools/usr/share/man/man1/idconvert.1 chmod 0644 -- debian/libpwiz-tools/usr/share/man/man1/idconvert.1 dh_strip -a install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/txt2mzml debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/79/f7f04fc38023b67d2f466965b03b3e5e238f84.debug install -d debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/c4/0b259bb7beb843d66421918bef3d2c1c4455c7.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/79/f7f04fc38023b67d2f466965b03b3e5e238f84.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/79/f7f04fc38023b67d2f466965b03b3e5e238f84.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/txt2mzml objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/79/f7f04fc38023b67d2f466965b03b3e5e238f84.debug debian/libpwiz-tools/usr/bin/txt2mzml install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/msconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ea/a3ac3496558640246c67442cc48444a7adcd23.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ea/a3ac3496558640246c67442cc48444a7adcd23.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ea/a3ac3496558640246c67442cc48444a7adcd23.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/msconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/ea/a3ac3496558640246c67442cc48444a7adcd23.debug debian/libpwiz-tools/usr/bin/msconvert install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/mscat debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/3c/6853921abde1d19a3fdab4f40af79fee3e5e27.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/3c/6853921abde1d19a3fdab4f40af79fee3e5e27.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/3c/6853921abde1d19a3fdab4f40af79fee3e5e27.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/mscat objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/3c/6853921abde1d19a3fdab4f40af79fee3e5e27.debug debian/libpwiz-tools/usr/bin/mscat install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/libpwiz-tools/usr/bin/idconvert debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/1d/2bb88b837097b273dc34d8dc24f1b36a3ec2e1.debug chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/1d/2bb88b837097b273dc34d8dc24f1b36a3ec2e1.debug chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/1d/2bb88b837097b273dc34d8dc24f1b36a3ec2e1.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz-tools/usr/bin/idconvert objcopy --add-gnu-debuglink debian/.debhelper/libpwiz-tools/dbgsym-root/usr/lib/debug/.build-id/1d/2bb88b837097b273dc34d8dc24f1b36a3ec2e1.debug debian/libpwiz-tools/usr/bin/idconvert install -d debian/.debhelper/libpwiz-tools/dbgsym-root/usr/share/doc ln -s libpwiz-tools debian/.debhelper/libpwiz-tools/dbgsym-root/usr/share/doc/libpwiz-tools-dbgsym strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libpwiz-dev/usr/lib/libpwiz.a chmod 0644 -- debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/c4/0b259bb7beb843d66421918bef3d2c1c4455c7.debug chown 0:0 -- debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/c4/0b259bb7beb843d66421918bef3d2c1c4455c7.debug strip --remove-section=.comment --remove-section=.note debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libpwiz3/dbgsym-root/usr/lib/debug/.build-id/c4/0b259bb7beb843d66421918bef3d2c1c4455c7.debug debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 install -d debian/.debhelper/libpwiz3/dbgsym-root/usr/share/doc ln -s libpwiz3 debian/.debhelper/libpwiz3/dbgsym-root/usr/share/doc/libpwiz3-dbgsym dh_compress -av -Xexample-files cd debian/libpwiz-tools cd debian/libpwiz3 cd debian/libpwiz-dev chmod a-x usr/share/doc/libpwiz-dev/changelog.Debian gzip -9nf usr/share/doc/libpwiz-dev/changelog.Debian cd '/build/libpwiz-3.0.18342' chmod a-x usr/share/doc/libpwiz3/changelog.Debian usr/share/man/man3/libpwiz.3 gzip -9nf usr/share/doc/libpwiz3/changelog.Debian usr/share/man/man3/libpwiz.3 cd '/build/libpwiz-3.0.18342' chmod a-x usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 gzip -9nf usr/share/doc/libpwiz-tools/changelog.Debian usr/share/man/man1/idconvert.1 usr/share/man/man1/mscat.1 usr/share/man/man1/msconvert.1 usr/share/man/man1/txt2mzml.1 cd '/build/libpwiz-3.0.18342' dh_makeshlibs -a rm -f debian/libpwiz-dev/DEBIAN/shlibs rm -f debian/libpwiz3/DEBIAN/shlibs install -d debian/libpwiz3/DEBIAN echo "libpwiz 3 libpwiz3 (>= 3.0.18342)" >> debian/libpwiz3/DEBIAN/shlibs chmod 0644 -- debian/libpwiz3/DEBIAN/shlibs chown 0:0 -- debian/libpwiz3/DEBIAN/shlibs mv debian/.debhelper/generated/libpwiz3/triggers.new debian/.debhelper/generated/libpwiz3/triggers rm -f debian/libpwiz-tools/DEBIAN/shlibs dh_installdeb -a install -d debian/libpwiz-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libpwiz3/triggers debian/libpwiz3/DEBIAN/triggers install -d debian/libpwiz-tools/DEBIAN dpkg-gensymbols -P/build/libpwiz-3.0.18342/debian -plibpwiz3 \ -v3.0.0 -c2 -d \ -e/build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.so.3.0.0 \ -O/build/libpwiz-3.0.18342/debian/libpwiz3/DEBIAN/symbols dpkg-gensymbols: debug: Scanning /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.so.3.0.0 for symbol information dpkg-gensymbols: warning: new libraries appeared in the symbols file: libpwiz.so.3 dpkg-gensymbols: warning: no debian/symbols file used as basis for generating /build/libpwiz-3.0.18342/debian/libpwiz3/DEBIAN/symbols dpkg-gensymbols: debug: Merging symbols from /build/libpwiz-3.0.18342/debian/build/usr/lib/libpwiz.so.3.0.0 as libpwiz.so.3 dpkg-gensymbols: debug: Storing symbols in /build/libpwiz-3.0.18342/debian/libpwiz3/DEBIAN/symbols. --- new_symbol_file (libpwiz3_3.0.0_amd64) +++ dpkg-gensymbolsyoJyu1 2023-08-03 15:58:29.121324293 -1200 @@ -0,0 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_ZNK4pwiz8analysis39SpectrumList_FilterPredicate_MSLevelSet6acceptERKNS_6msdata16SpectrumIdentityE@Base 3.0.0 + _ZNK4pwiz8analysis39SpectrumList_FilterPredicate_MSLevelSet6acceptERKNS_6msdata8SpectrumE@Base 3.0.0 + _ZNK4pwiz8analysis39SpectrumList_FilterPredicate_MSLevelSet8describeB5cxx11Ev@Base 3.0.0 + _ZNK4pwiz8analysis41ChromatogramList_FilterPredicate_IndexSet4doneEv@Base 3.0.0 + _ZNK4pwiz8analysis41ChromatogramList_FilterPredicate_IndexSet6acceptERKNS_6msdata20ChromatogramIdentityE@Base 3.0.0 + _ZNK4pwiz8analysis41SpectrumList_FilterPredicate_AnalyzerType6acceptERKNS_6msdata16SpectrumIdentityE@Base 3.0.0 + _ZNK4pwiz8analysis41SpectrumList_FilterPredicate_AnalyzerType6acceptERKNS_6msdata8SpectrumE@Base 3.0.0 + _ZNK4pwiz8analysis41SpectrumList_FilterPredicate_AnalyzerType8describeB5cxx11Ev@Base 3.0.0 + _ZNK4pwiz8analysis41SpectrumList_FilterPredicate_ScanEventSet6acceptERKNS_6msdata16SpectrumIdentityE@Base 3.0.0 + 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_ZNK4pwiz9chemistry17IsotopeCalculator4Impl20distributionManuallyENS0_7Element4TypeEi@Base 3.0.0 + _ZNK4pwiz9chemistry24IsotopeEnvelopeEstimator15isotopeEnvelopeEd@Base 3.0.0 + _ZNK4pwiz9chemistry24IsotopeEnvelopeEstimator4Impl11indexToMassEj@Base 3.0.0 + _ZNK4pwiz9chemistry24IsotopeEnvelopeEstimator4Impl11massToIndexEd@Base 3.0.0 + _ZNK4pwiz9chemistry24IsotopeEnvelopeEstimator4Impl15isotopeEnvelopeEd@Base 3.0.0 + _ZNK4pwiz9chemistry7Formula15molecularWeightEv@Base 3.0.0 + _ZNK4pwiz9chemistry7Formula16monoisotopicMassEv@Base 3.0.0 + _ZNK4pwiz9chemistry7Formula4dataEv@Base 3.0.0 + _ZNK4pwiz9chemistry7Formula7formulaB5cxx11Ev@Base 3.0.0 + _ZNK4pwiz9chemistry7FormulaeqERKS1_@Base 3.0.0 + _ZNK4pwiz9chemistry7FormulaixENS0_7Element4TypeE@Base 3.0.0 + _ZNK4pwiz9chemistry7FormulaneERKS1_@Base 3.0.0 + _ZNK4pwiz9frequency19MagnitudeLorentzian12coefficientsEv@Base 3.0.0 + _ZNK4pwiz9frequency19MagnitudeLorentzian17leastSquaresErrorEv@Base 3.0.0 + 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_ZTSN4pwiz8analysis21SpectrumList_MZWindowE@Base 3.0.0 + _ZTSN4pwiz8analysis21SpectrumList_SmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis22BinnedAdjustmentObjectE@Base 3.0.0 + _ZTSN4pwiz8analysis22PeakelGrower_ProximityE@Base 3.0.0 + _ZTSN4pwiz8analysis22SpectrumList_MZRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramListWrapperE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramList_Filter9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis23ChromatogramList_FilterE@Base 3.0.0 + _ZTSN4pwiz8analysis23FeatureModeler_GaussianE@Base 3.0.0 + _ZTSN4pwiz8analysis23MSDataAnalyzerContainerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_PeakPickerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_ScanSummerE@Base 3.0.0 + _ZTSN4pwiz8analysis23SpectrumList_TitleMakerE@Base 3.0.0 + _ZTSN4pwiz8analysis24LocalMaximumPeakDetectorE@Base 3.0.0 + _ZTSN4pwiz8analysis24SpectrumList_IonMobilityE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGenerator9PredicateE@Base 3.0.0 + _ZTSN4pwiz8analysis26ProteinList_DecoyGeneratorE@Base 3.0.0 + _ZTSN4pwiz8analysis26SpectrumList_MetadataFixerE@Base 3.0.0 + _ZTSN4pwiz8analysis28NoVendorPeakPickingExceptionE@Base 3.0.0 + _ZTSN4pwiz8analysis28PrecursorRecalculatorDefaultE@Base 3.0.0 + _ZTSN4pwiz8analysis28SpectrumList_LockmassRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis28SpectrumList_PrecursorRefineE@Base 3.0.0 + _ZTSN4pwiz8analysis29ChromatogramList_XICGeneratorE@Base 3.0.0 + _ZTSN4pwiz8analysis30SpectrumList_ChargeFromIsotopeE@Base 3.0.0 + _ZTSN4pwiz8analysis30SpectrumList_ZeroSamplesFilterE@Base 3.0.0 + _ZTSN4pwiz8analysis32ChromatogramList_LockmassRefinerE@Base 3.0.0 + _ZTSN4pwiz8analysis33ProteinList_FilterPredicate_IdSetE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_ChargeStateCalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_FilterPredicate_IdSetE@Base 3.0.0 + _ZTSN4pwiz8analysis34SpectrumList_PrecursorRecalculatorE@Base 3.0.0 + _ZTSN4pwiz8analysis36ProteinList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis37SpectrumList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis37SpectrumList_FilterPredicate_PolarityE@Base 3.0.0 + _ZTSN4pwiz8analysis38ChromatogramList_SavitzkyGolaySmootherE@Base 3.0.0 + _ZTSN4pwiz8analysis38SpectrumList_FilterPredicate_MzPresentE@Base 3.0.0 + _ZTSN4pwiz8analysis39SpectrumList_FilterPredicate_MSLevelSetE@Base 3.0.0 + _ZTSN4pwiz8analysis41ChromatogramList_FilterPredicate_IndexSetE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_AnalyzerTypeE@Base 3.0.0 + _ZTSN4pwiz8analysis41SpectrumList_FilterPredicate_ScanEventSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanNumberSetE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_FilterPredicate_ScanTimeRangeE@Base 3.0.0 + _ZTSN4pwiz8analysis42SpectrumList_SorterPredicate_ScanStartTimeE@Base 3.0.0 + _ZTSN4pwiz8analysis43SpectrumList_FilterPredicate_ActivationTypeE@Base 3.0.0 + 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_ZZN5boost9function2INS_14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEESC_SC_E9assign_toINS_9algorithm6detail13token_finderFINSH_10is_any_ofFIcEEEEEEvT_E13stored_vtable@Base 3.0.0 + _ZZN5boost9function2INS_14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEESC_SC_E9assign_toINS_9algorithm6detail13token_finderFINSH_14is_classifiedFEEEEEvT_E13stored_vtable@Base 3.0.0 + _ZZN5boost9function2INS_14iterator_rangeIN9__gnu_cxx17__normal_iteratorIPcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEESB_SB_E9assign_toINS_9algorithm6detail13token_finderFINSG_10is_any_ofFIcEEEEEEvT_E13stored_vtable@Base 3.0.0 + _ZZN5boost9function2INS_14iterator_rangeIPKcEES3_S3_E9assign_toINS_9algorithm6detail13token_finderFINS8_10is_any_ofFIcEEEEEEvT_E13stored_vtable@Base 3.0.0 + _ZZN5boost9singletonI7ETD_SVMLi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz4data6unimod10UnimodDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz8proteome13Fragmentation4Impl10StaticDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz8proteome9AminoAcid4Info10RecordDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9singletonIN4pwiz9chemistry7Element10RecordDataELi0EvE14instance_proxy15create_instanceEvE12buf_instance@Base 3.0.0 + _ZZN5boost9xpressive16cpp_regex_traitsIcE10char_classEmE16s_char_class_map@Base 3.0.0 + _ZZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE11invalid_ptrB5cxx11@Base 3.0.0 + _ZZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE11invalid_xprB5cxx11@Base 3.0.0 + _ZZN5boost9xpressive6detail21get_invalid_xpressionIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEERKNS1_16shared_matchableIT_EEvE17invalid_matchableB5cxx11@Base 3.0.0 + _ZZNK5boost9xpressive6detail16sub_match_vectorIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEEixEmE6s_null@Base 3.0.0 + _log@Base 3.0.0 + libsvm_version@Base 3.0.0 + os_@Base 3.0.0 + peakFamilyDetectorFTTestDataSize_@Base 3.0.0 + peakFamilyDetectorFTTestData_@Base 3.0.0 + sampleData_@Base 3.0.0 + sampleFrequencyData_@Base 3.0.0 + sampleMassDataSize_@Base 3.0.0 + sampleMassData_@Base 3.0.0 + svm_check_parameter@Base 3.0.0 + svm_check_probability_model@Base 3.0.0 + svm_cross_validation@Base 3.0.0 + svm_destroy_model@Base 3.0.0 + svm_destroy_param@Base 3.0.0 + svm_free_and_destroy_model@Base 3.0.0 + svm_free_model_content@Base 3.0.0 + svm_get_labels@Base 3.0.0 + svm_get_nr_class@Base 3.0.0 + svm_get_svm_type@Base 3.0.0 + svm_get_svr_probability@Base 3.0.0 + svm_load_model@Base 3.0.0 + svm_predict@Base 3.0.0 + svm_predict_probability@Base 3.0.0 + svm_predict_values@Base 3.0.0 + svm_save_model@Base 3.0.0 + svm_set_print_string_function@Base 3.0.0 + svm_train@Base 3.0.0 + testDataSize_@Base 3.0.0 + testData_@Base 3.0.0 echo "libpwiz 3 libpwiz3 (>= 3.0.9393-1)" > \ /build/libpwiz-3.0.18342/debian/libpwiz3/DEBIAN/shlibs dh_fixperms -a find debian/libpwiz3 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-tools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz3/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libpwiz3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libpwiz-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_lintian -a dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libpwiz-tools.substvars debian/libpwiz-tools/usr/bin/idconvert debian/libpwiz-tools/usr/bin/mscat debian/libpwiz-tools/usr/bin/msconvert debian/libpwiz-tools/usr/bin/txt2mzml dpkg-shlibdeps -Tdebian/libpwiz3.substvars debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: symbol pthread_mutexattr_init used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateCopy used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol crc32 used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_mutexattr_destroy used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol compress used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol uncompress used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateReset used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol compressBound used by debian/libpwiz3/usr/lib/libpwiz.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dh_gencontrol -a echo misc:Depends= >> debian/libpwiz-dev.substvars echo misc:Pre-Depends= >> debian/libpwiz-dev.substvars dpkg-gencontrol -plibpwiz-dev -ldebian/changelog -Tdebian/libpwiz-dev.substvars -Pdebian/libpwiz-dev echo misc:Depends= >> debian/libpwiz3.substvars echo misc:Pre-Depends= >> debian/libpwiz3.substvars install -d debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN dpkg-gencontrol -plibpwiz3 -ldebian/changelog -Tdebian/libpwiz3.substvars -Pdebian/.debhelper/libpwiz3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libpwiz3-dbgsym "-DDepends=libpwiz3 (= \${binary:Version})" "-DDescription=debug symbols for libpwiz3" -DBuild-Ids=c40b259bb7beb843d66421918bef3d2c1c4455c7 -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/libpwiz-tools.substvars echo misc:Pre-Depends= >> debian/libpwiz-tools.substvars install -d debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN dpkg-gencontrol -plibpwiz-tools -ldebian/changelog -Tdebian/libpwiz-tools.substvars -Pdebian/.debhelper/libpwiz-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libpwiz-tools-dbgsym "-DDepends=libpwiz-tools (= \${binary:Version})" "-DDescription=debug symbols for libpwiz-tools" "-DBuild-Ids=1d2bb88b837097b273dc34d8dc24f1b36a3ec2e1 3c6853921abde1d19a3fdab4f40af79fee3e5e27 79f7f04fc38023b67d2f466965b03b3e5e238f84 eaa3ac3496558640246c67442cc48444a7adcd23" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libpwiz-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibpwiz3 -ldebian/changelog -Tdebian/libpwiz3.substvars -Pdebian/libpwiz3 chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibpwiz-tools -ldebian/changelog -Tdebian/libpwiz-tools.substvars -Pdebian/libpwiz-tools chmod 0644 -- debian/libpwiz-tools/DEBIAN/control chown 0:0 -- debian/libpwiz-tools/DEBIAN/control chmod 0644 -- debian/libpwiz3/DEBIAN/control chown 0:0 -- debian/libpwiz3/DEBIAN/control chmod 0644 -- debian/libpwiz-dev/DEBIAN/control chown 0:0 -- debian/libpwiz-dev/DEBIAN/control dh_md5sums -a cd debian/libpwiz-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libpwiz3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libpwiz-tools/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-tools/DEBIAN/md5sums chmod 0644 -- debian/libpwiz3/DEBIAN/md5sums chown 0:0 -- debian/libpwiz3/DEBIAN/md5sums cd debian/.debhelper/libpwiz-tools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/libpwiz3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libpwiz-tools/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libpwiz3/dbgsym-root/DEBIAN/md5sums cd debian/libpwiz-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libpwiz-dev/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-dev/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/.debhelper/libpwiz-tools/dbgsym-root .. dpkg-deb --build debian/libpwiz-tools .. dpkg-deb --build debian/libpwiz3 .. dpkg-deb --build debian/.debhelper/libpwiz3/dbgsym-root .. dpkg-deb --build debian/libpwiz-dev .. dpkg-deb: building package 'libpwiz3' in '../libpwiz3_3.0.18342-4_amd64.deb'. dpkg-deb: building package 'libpwiz-tools-dbgsym' in '../libpwiz-tools-dbgsym_3.0.18342-4_amd64.deb'. dpkg-deb: building package 'libpwiz-tools' in '../libpwiz-tools_3.0.18342-4_amd64.deb'. dpkg-deb: building package 'libpwiz-dev' in '../libpwiz-dev_3.0.18342-4_amd64.deb'. dpkg-deb: building package 'libpwiz3-dbgsym' in '../libpwiz3-dbgsym_3.0.18342-4_amd64.deb'. entering the build-indep-stamp target cd doc/dox && doxygen warning: Tag 'USE_WINDOWS_ENCODING' at line 11 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DETAILS_AT_TOP' at line 33 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 70 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 119 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 130 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 177 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 178 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 210 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_WIDTH' at line 231 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_HEIGHT' at line 232 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/libpwiz-3.0.18342/pwiz Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/common Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/demux Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/frequency Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/passive Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/peptideid Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing Searching for files in directory /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/common Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/identdata Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/misc Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/msdata Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/proteome Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/tradata Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI Searching for files in directory /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/chemistry Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/utilities Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/math Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/minimxml Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/misc Searching for files in directory /build/libpwiz-3.0.18342/pwiz/utility/proteome Searching for files in directory /build/libpwiz-3.0.18342/doc/dox Reading and parsing tag files Parsing files Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListFactoryTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListWrapper.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListWrapperTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmoother.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/SavitzkyGolaySmootherTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/CwtPeakDetector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/CwtPeakDetector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/CwtPeakDetectorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/DataFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/DataFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/ExtraZeroSamplesFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/ExtraZeroSamplesFilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/LocalMaximumPeakDetector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/LocalMaximumPeakDetectorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/PeakDetector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/PeakDetector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/SavitzkyGolaySmoother.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/SavitzkyGolaySmootherTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/Smoother.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/Smoother.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/WhittakerSmoother.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/WhittakerSmoother.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/WhittakerSmootherTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/WhittakerSmootherTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/ZeroSampleFiller.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/ZeroSampleFiller.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/common/ZeroSampleFillerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/CubicHermiteSpline.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/CubicHermiteSpline.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/CubicHermiteSplineTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxDebugReader.hpp... 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Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxSolverTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxTypes.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/DemuxTypes.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/EnumConstantNotPresentException.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/IDemultiplexer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/IDemultiplexer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/IInterpolation.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/IInterpolation.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/IPrecursorMaskCodec.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/MatrixIO.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/MatrixIO.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/MatrixIOTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/MatrixIOTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/MSXDemultiplexer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/MSXDemultiplexer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/OverlapDemultiplexer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/PrecursorMaskCodec.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractor.hpp... 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Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataCache.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataCache.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataCacheTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataCacheTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/PepXMLCat.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/PepXMLCat.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionAnalyzer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionAnalyzer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionSIC.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionSIC.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionSlice.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionSlice.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionTIC.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RegionTIC.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/RunSummary.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/RunSummary.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/SpectrumBinaryData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/SpectrumBinaryData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/SpectrumTable.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/SpectrumTable.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/passive/TabularConfig.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/passive/TabularConfig.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakel.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorPeakelTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimple.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorSimpleTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureDetectorTuningTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModeler.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModeler.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/FeatureModelerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTField.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTField.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/MZRTFieldTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/Noise.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/Noise.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/NoiseTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/NoiseTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrower.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrower.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelGrowerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPicker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPicker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakelPickerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractor.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractor.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakExtractorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFamilyDetectorFTTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinder.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinder.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFinderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peakdetect/PeakFitterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flat.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flat.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_flatTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideID_pepXMLTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMap.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMap.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/peptideid/PeptideIDMapTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_DecoyGeneratorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_Filter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinList_FilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactory.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/proteome_processing/ProteinListFactoryTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2Deisotoper.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2DeisotoperTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/MS2NoiseFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorMassFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefault.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/PrecursorRecalculatorDefaultTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_3D_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotopeTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_DemuxTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Filter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_FilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_IonMobility_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefinerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZRefinerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_MZWindowTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefineTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Smoother.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_Sorter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/analysis/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/analysis/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStreamTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStreamTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/cvtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/cvtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/diff_std_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndexTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndexTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/obo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/obo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/obotest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/obotest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypes.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypes.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/common/UnimodTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/common/UnimodTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimReader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimReader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DelimWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/ExtendedReadTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/ExtendedReadTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/identdata/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/identdata/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Index_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Index_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFileTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFileTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMerger.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMerger.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMergerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMergerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSnReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSnReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SHA1OutputObserver.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SHA1OutputObserver.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfoTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfoTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIterator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIterator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIteratorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIteratorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_BTDX.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_BTDX.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBase.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBase.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBaseTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBaseTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCache.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCache.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCacheTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCacheTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapper.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapper.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/msdata/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/msdata/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcidTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcidTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/DigestionTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/DigestionTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Modification.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Modification.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/PeptideTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/PeptideTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCacheTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCacheTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapper.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapper.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapperTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapperTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFileTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFileTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader_FASTA.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader_FASTA.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/proteome/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/proteome/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/DefaultReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/DefaultReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/DiffTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/DiffTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/examples.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/examples.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/IOTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/IOTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFileTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFileTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/tradata/Version.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/tradata/Version.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Detail.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters_Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Chemistry.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Chemistry.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/ChemistryTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Ion.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Ion.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeEnvelopeEstimatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTable.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTable.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTableTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeTableTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZTolerance.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZTolerance.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZToleranceTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/chemistry/MZToleranceTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/base.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/base.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/basetest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/basetest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/constants.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/constants.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copy_iftest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copy_iftest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copyif.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/copyif.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsumtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsumtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/diff.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/diff.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/difftest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/difftest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/equispaceinterpolationtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/scale.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/scale.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/base.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/base.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filterutilstest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfiltertest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/gauss.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/mexhat.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepicker.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepicker.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepickertest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bin1d.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bin1d.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/breakspec.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/breakspec.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1dtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2dense.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2dense.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/convert2densetest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinbinwithtest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/determinebinwidth.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/erf.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/erf.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/erfTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/erfTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQR.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQR.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQRTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/HouseholderQRTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquares.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquares.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquaresTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquaresTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolver.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolver.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolverTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolverTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/MatchedFilterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/MatrixInverse.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/MatrixInverse.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPair.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPair.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPairTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/OrderedPairTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/Parabola.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/Parabola.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/ParabolaTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/ParabolaTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/qr.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/qr.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/qrTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/qrTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/round.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/round.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/Stats.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/Stats.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/StatsTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/StatsTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/math/Types.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/math/Types.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParser.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParser.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParserTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/SAXParserTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/almost_equal_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64Test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Base64Test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryData.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryData.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryDataTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/BinaryDataTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/CharIndexedVector.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/CharIndexedVector.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompter.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompter.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/ClickwrapPrompterTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Container.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Container.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/cpp_cli_utilities.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/cpp_cli_utilities.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTime.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTime.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTimeTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/DateTimeTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/endian.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/endian.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/endian_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/endian_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Environment.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Environment.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Exception.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Exception.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/ExceptionTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/ExceptionTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Export.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Export.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/FailTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/FailTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Filesystem.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Filesystem.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/FilesystemTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/FilesystemTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSet.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSet.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSetTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IntegerSetTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListener.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListener.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListenerTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/IterationListenerTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/mru_list_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/MSIHandler.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/MSIHandler.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Once.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Once.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/optimized_lexical_cast.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/optimized_lexical_cast.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/pinned_gcroot.h... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/pinned_gcroot.h... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/random_access_compressed_ifstream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1.h... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1.h... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream_test.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1_ostream_test.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1Calculator.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1Calculator.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1CalculatorTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/SHA1CalculatorTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/shared_map.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/shared_map.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Sing/build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/constants.hpp:28: warning: the name 'Constants.h' supplied as the argument in the \file statement is not an input file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp:27: warning: the name 'cumsum.h' supplied as the argument in the \file statement is not an input file /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp:29: warning: the name 'MassCompareFunctors.h' supplied as the argument in the \file statement is not an input file /build/libpwiz-3.0.18342/pwiz/analysis/frequency/FrequencyEstimatorSimple.hpp:42: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::frequency::FrequencyEstimatorSimple::Type /build/libpwiz-3.0.18342/pwiz/analysis/frequency/TruncatedLorentzian.hpp:43: warning: documented symbol 'enum PWIZ_API_DECL pwiz::frequency::TruncatedLorentzian::ParameterIndex' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzer.hpp:75: warning: documented symbol 'enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzer::UpdateRequest' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/analysis/passive/MSDataAnalyzer.hpp:164: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::analysis::MSDataAnalyzerDriver::Status /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:112: warning: documented symbol 'enum PWIZ_API_DECL pwiz::cv::pwiz::cv::CVID' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp:80: warning: member with no name found. /build/libpwiz-3.0.18342/pwiz/data/identdata/IdentDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IdentDataFile::pwiz::identdata::IdentDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp:211: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::AnalysisDataFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp:255: warning: documented symbol 'enum PWIZ_API_DECL pwiz::identdata::IO::SequenceCollectionFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp:54: warning: documented symbol 'enum PWIZ_API_DECL pwiz::data::FrequencyData::IOMode' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp:173: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::BinaryDataFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp:212: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::IO::SpectrumListFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MemoryMRUCacheMode' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::msdata::MSDataFile::pwiz::msdata::MSDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp:43: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::proteome::AminoAcid::pwiz::proteome::AminoAcid::Type /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp:117: warning: no matching class member found for enum PWIZ_API_DECL pwiz::proteome::Digestion::pwiz::proteome::Digestion::Specificity /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:40: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationParsing' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::pwiz::proteome::ModificationDelimiter' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp:36: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteinListCacheMode' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp:49: warning: documented symbol 'enum PWIZ_API_DECL pwiz::proteome::ProteomeDataFile::pwiz::proteome::ProteomeDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp:45: warning: documented symbol 'enum PWIZ_API_DECL pwiz::tradata::TraDataFile::pwiz::tradata::TraDataFile::Format' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/chemistry/Chemistry.hpp:78: warning: no uniquely matching class member found for enum PWIZ_API_DECL pwiz::chemistry::Element::pwiz::chemistry::Element::Type /build/libpwiz-3.0.18342/pwiz/utility/chemistry/IsotopeCalculator.hpp:44: warning: documented symbol 'enum PWIZ_API_DECL pwiz::chemistry::IsotopeCalculator::NormalizationFlags' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/math/LinearLeastSquares.hpp:34: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearLeastSquaresType' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/math/LinearSolver.hpp:47: warning: documented symbol 'enum PWIZ_API_DECL pwiz::math::LinearSolverType' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/minimxml/XMLWriter.hpp:52: warning: documented symbol 'enum PWIZ_API_DECL pwiz::minimxml::XMLWriter::pwiz::minimxml::XMLWriter::StyleFlag' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp:64: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Align' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/utility/misc/Image.hpp:65: warning: documented symbol 'enum PWIZ_API_DECL pwiz::util::Image::Size' was not declared or defined. /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! leton.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Singleton.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Std.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Std.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Stream.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/Stream.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/String.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/String.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReader.hpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReader.hpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReaderTest.cpp... Parsing file /build/libpwiz-3.0.18342/pwiz/utility/misc/TabReaderTest.cpp... Preprocessing /build/libpwiz-3.0.18342/pwiz/utility/misc/Timer.hpp... 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Preprocessing /build/libpwiz-3.0.18342/doc/dox/mainpage.hpp... Parsing file /build/libpwiz-3.0.18342/doc/dox/mainpage.hpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating code for file mainpage.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_Filter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_FilterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefinerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/chromatogram_processing/ChromatogramListFactory.hpp... 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Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_SorterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactory.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumListFactoryTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/analysis/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Version.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Version.hpp... 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Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndexTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/obo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/obotest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypes.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/ParamTypesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/Unimod.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/common/UnimodTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/DefaultReaderList.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/DefaultReaderList.hpp... 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Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IO.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/IO.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/IOTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Index_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFileTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMerger.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMergerTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSnReaderTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MGF_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_MSn_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SHA1OutputObserver.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumInfoTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIterator.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumIteratorTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_BTDX.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MGF_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_MSn_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumList_mzXML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBase.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListBaseTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCache.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListCacheTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapper.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumListWrapperTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/msdata/SpectrumWorkerThreads.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcid.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/AminoAcidTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Digestion.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/DigestionTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Modification.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/PeptideTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCache.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListCacheTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapper.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteinListWrapperTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFile.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataFileTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ProteomeDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader_FASTA.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Serializer_FASTA_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Serializer_traML_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFile.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataFileTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TraDataTest.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/ChromatogramList_ABI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/Reader_ABI_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/ChromatogramList_Agilent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/Reader_Agilent_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/ChromatogramList_Bruker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/ExtendedReaderList.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Shimadzu/SpectrumList_Shimadzu.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Test.cpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/Reader_UIMF.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UIMF/SpectrumList_UIMF.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI_Detail.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.hpp... Generating code for file /build/libpwiz-3.0.18342/pwiz/data/vendor_readers/Waters/Reader_Waters.hpp... 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Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata//build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:875: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:878: warning: Found unknown command '@LDI' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4580: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:4583: warning: explicit link request to 'Peptides' could not be resolved /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:7889: warning: Found unknown command '\t' /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp:8945: warning: Unsupported xml/html tag found Version.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/Version.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStream.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/BinaryIndexStreamTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/cv.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/cvtest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslator.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/CVTranslatorTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/diff_std_test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/Index.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/common/MemoryIndex.hpp... 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Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/IO.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/IOTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/IOTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /tradata/IOTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMap.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/KwCVMapTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MascotReader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/MzidPredicates.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdent.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Pep2MzIdentTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/Reader.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReaderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/References.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/References.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/References.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/ReferencesTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ReferencesTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/ReferencesTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_mzid_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_pepXML_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_protXML_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/Serializer_Text_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/identdata/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/proteome/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/tradata/TextWriter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParameters.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/CalibrationParametersTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/FrequencyDataTestData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXMLTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/PeakDataTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatum.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/misc/SampleDatumTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoder.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/BinaryDataEncoderTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramList_mzML_Test.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBase.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/ChromatogramListBaseTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/Index_mzML.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapterTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MemoryMRUCache.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFile.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataFileTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMerger.hpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataMergerTest.cpp... Generating docs for file /build/libpwiz-3.0.18342/pwiz/data/msdata/MSDataTest.cpp... 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Generating group documentation... Generating class documentation... Generating docs for compound AnotherRootHandler... Generating docs for compound BadListener... Generating docs for compound CancelListener... Generating docs for compound CancelProgressCallback... Generating docs for compound CSHA1... Generating docs for compound CubicHermiteSplineTest... Generating docs for compound CustomPair... Generating docs for compound Datum... Generating docs for compound DefaultArrayLengthSorter... Generating docs for compound DemuxDebugRWTest... Generating docs for compound DemuxHelpersTest... Generating docs for compound DemuxSolverTest... Generating docs for compound DemuxTest... Generating docs for nested compound DemuxTest::MSDPair... Generating docs for compound DigestedPeptideLessThan... Generating docs for compound EnumConstantNotPresentException... Generating docs for compound EnzymePtr_missedCleavages... Generating docs for compound EnzymePtr_specificity... 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Generating docs for compound MSDataWithSettableVersion... Generating docs for compound MSLevelSorter... Generating docs for compound MyBase... Generating docs for compound MyPred... Generating docs for compound MyWrapper... Generating docs for compound mzrtEqual... Generating docs for compound NestedHandler... Generating docs for compound OneMinusAbs... Generating docs for compound pairData... Generating docs for compound ParametrizedCosine... Generating docs for compound parentIon... Generating docs for compound precursorGroup... Generating docs for compound PrintAttribute... Generating docs for compound PrintEventHandler... Generating docs for compound RawMassDatum... Generating docs for compound Reader1... Generating docs for nested compound Reader1::Config... Generating docs for nested compound Reader1::ReaderConfig... Generating docs for compound Reader2... Generating docs for nested compound Reader2::Config... Generating docs for nested compound Reader2::ReaderConfig... Generating docs for compound ridgeLine... Generating docs for compound Root... Generating docs for compound RootHandler... Generating docs for compound rtimeMap... Generating docs for compound scoreChain... Generating docs for compound Second... Generating docs for compound SecondHandler... Generating docs for compound SelectedIndexPredicate... Generating docs for compound SetRetentionTime... Generating docs for compound SHA1_WORKSPACE_BLOCK... Generating docs for compound Simple... Generating docs for compound SimpleAnalyzer... Generating docs for compound SimpleProgressCallback... Generating docs for compound SpectrumPeakExtractorTest... Generating docs for compound TestAminoAcid... Generating docs for compound TestChargeStateCalculator... Generating docs for compound TestData... Generating docs for compound TestDatum... Generating docs for compound TestDeisotopeCalculator... Generating docs for compound TestDeisotoper... Generating docs for compound TestETDMassFilter... Generating docs for compound TestFormula... Generating docs for compound TestFragmentation... Generating docs for compound TestInfo... Generating docs for compound TestIterationListener... Generating docs for compound TestIterationListener_WithCancel... Generating docs for compound TestListener... Generating docs for compound TestMetadataFixer... Generating docs for compound TestModification... Generating docs for compound TestModifiedPeptide... Generating docs for compound TestMS2Denoise... Generating docs for compound TestOperator... Generating docs for compound TestOutputObserver... Generating docs for compound TestPair... Generating docs for compound TestPathmask... Generating docs for compound TestPeptide... Generating docs for compound TestReader... Generating docs for compound TestScanSummerCalculator... Generating docs for compound TestSpectrumInfo... Generating docs for compound TestThresholder... Generating docs for compound ThreadStatus... Generating docs for compound UserParamNameIs... Generating docs for compound WriteCVParam... Generating namespace index... Generating docs for namespace boost Generating docs for namespace boost::date_time Generating docs for namespace DemuxTypes Generating docs for namespace msclr Generating docs for compound msclr::pinned_gcroot... Generating docs for namespace pwiz Generating docs for compound pwiz::Version... Generating docs for namespace pwiz::analysis Generating docs for compound pwiz::analysis::ChromatogramList_Filter... Generating docs for nested compound pwiz::analysis::ChromatogramList_Filter::Predicate... Generating docs for compound pwiz::analysis::ChromatogramList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ChromatogramList_LockmassRefiner... Generating docs for compound pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::ChromatogramList_XICGenerator... Generating docs for compound pwiz::analysis::ChromatogramListFactory... Generating docs for compound pwiz::analysis::ChromatogramListWrapper... Generating docs for compound pwiz::analysis::SavitzkyGolaySmoother... Generating docs for compound pwiz::analysis::CwtPeakDetector... Generating docs for compound pwiz::analysis::SpectrumDataFilter... Generating docs for compound pwiz::analysis::ChromatogramDataFilter... Generating docs for compound pwiz::analysis::ExtraZeroSamplesFilter... Generating docs for compound pwiz::analysis::LocalMaximumPeakDetector... Generating docs for compound pwiz::analysis::Peak... Generating docs for compound pwiz::analysis::PeakDetector... Generating docs for compound pwiz::analysis::Smoother... Generating docs for compound pwiz::analysis::WhittakerSmoother... Generating docs for compound pwiz::analysis::ZeroSampleFiller... Generating docs for compound pwiz::analysis::CubicHermiteSpline... Generating docs for compound pwiz::analysis::DemuxDebugReader... Generating docs for compound pwiz::analysis::DemuxDebugWriter... Generating docs for compound pwiz::analysis::DemuxSolver... Generating docs for compound pwiz::analysis::NNLSSolver... Generating docs for compound pwiz::analysis::IDemultiplexer... Generating docs for compound pwiz::analysis::IsoWindowHasher... Generating docs for compound pwiz::analysis::DemuxWindow... Generating docs for compound pwiz::analysis::IsolationWindow... Generatin/build/libpwiz-3.0.18342/pwiz/analysis/demux/PrecursorMaskCodec.hpp:92: warning: argument 'demuxWindows' from the argument list of pwiz::analysis::PrecursorMaskCodec::IdentifyOverlap has multiple @param documentation sections /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:37: warning: argument 'ppmError' of command @param is not found in the argument list of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) /build/libpwiz-3.0.18342/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:42: warning: The following parameter of pwiz::analysis::SpectrumPeakExtractor::SpectrumPeakExtractor(const std::vector< double > &peakMzList, const pwiz::chemistry::MZTolerance &massError) is not documented: parameter 'massError' g docs for compound pwiz::analysis::IPrecursorMaskCodec... Generating docs for compound pwiz::analysis::MatrixIO... Generating docs for compound pwiz::analysis::MSXDemultiplexer... Generating docs for nested compound pwiz::analysis::MSXDemultiplexer::Params... Generating docs for compound pwiz::analysis::OverlapDemultiplexer... Generating docs for nested compound pwiz::analysis::OverlapDemultiplexer::Params... Generating docs for compound pwiz::analysis::PrecursorMaskCodec... Generating docs for nested compound pwiz::analysis::PrecursorMaskCodec::DemuxBoundary... Generating docs for compound pwiz::analysis::SpectrumPeakExtractor... Generating docs for compound pwiz::analysis::MetadataReporter... Generating docs for compound pwiz::analysis::analyzer_strings< MetadataReporter >... Generating docs for compound pwiz::analysis::MSDataAnalyzer... Generating docs for nested compound pwiz::analysis::MSDataAnalyzer::DataInfo... Generating docs for compound pwiz::analysis::analyzer_strings... Generating docs for compound pwiz::analysis::MSDataAnalyzerContainer... Generating docs for compound pwiz::analysis::MSDataAnalyzerDriver... Generating docs for nested compound pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback... Generating docs for compound pwiz::analysis::MSDataCache... Generating docs for nested compound pwiz::analysis::MSDataCache::Config... Generating docs for compound pwiz::analysis::PepxmlRecordReader... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::Config... Generating docs for nested compound pwiz::analysis::PepxmlRecordReader::record... Generating docs for compound pwiz::analysis::RegionAnalyzer... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Config... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::SpectrumStats... Generating docs for nested compound pwiz::analysis::RegionAnalyzer::Stats... Generating docs for compound pwiz::analysis::RegionSIC... Generating docs for nested compound pwiz::analysis::RegionSIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSIC >... Generating docs for compound pwiz::analysis::RegionSlice... Generating docs for nested compound pwiz::analysis::RegionSlice::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionSlice >... Generating docs for compound pwiz::analysis::RegionTIC... Generating docs for nested compound pwiz::analysis::RegionTIC::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RegionTIC >... Generating docs for compound pwiz::analysis::RunSummary... Generating docs for nested compound pwiz::analysis::RunSummary::Config... Generating docs for compound pwiz::analysis::analyzer_strings< RunSummary >... Generating docs for compound pwiz::analysis::SpectrumBinaryData... Generating docs for nested compound pwiz::analysis::SpectrumBinaryData::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumBinaryData >... Generating docs for compound pwiz::analysis::SpectrumTable... Generating docs for nested compound pwiz::analysis::SpectrumTable::Config... Generating docs for compound pwiz::analysis::analyzer_strings< SpectrumTable >... Generating docs for compound pwiz::analysis::TabularConfig... Generating docs for compound pwiz::analysis::FeatureDetector... Generating docs for compound pwiz::analysis::FeatureDetectorPeakel... Generating docs for nested compound pwiz::analysis::FeatureDetectorPeakel::Config... Generating docs for compound pwiz::analysis::FeatureDetectorSimple... Generating docs for compound pwiz::analysis::FeatureModeler... Generating docs for compound pwiz::analysis::FeatureModeler_Gaussian... Generating docs for compound pwiz::analysis::MZRTField... Generating docs for compound pwiz::analysis::RTMatches_Any... Generating docs for compound pwiz::analysis::RTMatches_Contains... Generating docs for compound pwiz::analysis::RTMatches_IsContainedIn... Generating docs for compound pwiz::analysis::Noise... Generating docs for compound pwiz::analysis::NoiseCalculator... Generating docs for compound pwiz::analysis::NoiseCalculator_2Pass... Generating docs for nested compound pwiz::analysis::NoiseCalculator_2Pass::Config... Generating docs for compound pwiz::analysis::PeakelGrower... Generating docs for compound pwiz::analysis::PeakelGrower_Proximity... Generating docs for nested compound pwiz::analysis::PeakelGrower_Proximity::Config... Generating docs for compound pwiz::analysis::PeakelPicker... Generating docs for compound pwiz::analysis::PeakelPicker_Basic... Generating docs for nested compound pwiz::analysis::PeakelPicker_Basic::Config... Generating docs for compound pwiz::analysis::PeakExtractor... Generating docs for compound pwiz::analysis::PeakFamilyDetector... Generating docs for compound pwiz::analysis::PeakFamilyDetectorFT... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::Config... Generating docs for nested compound pwiz::analysis::PeakFamilyDetectorFT::NoDataException... Generating docs for compound pwiz::analysis::PeakFinder... Generating docs for compound pwiz::analysis::PeakFinder_SNR... Generating docs for nested compound pwiz::analysis::PeakFinder_SNR::Config... Generating docs for compound pwiz::analysis::PeakFitter... Generating docs for compound pwiz::analysis::PeakFitter_Parabola... Generating docs for nested compound pwiz::analysis::PeakFitter_Parabola::Config... Generating docs for compound pwiz::analysis::ProteinList_DecoyGenerator... Generating docs for nested compound pwiz::analysis::ProteinList_DecoyGenerator::Predicate... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed... Generating docs for compound pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled... Generating docs for compound pwiz::analysis::ProteinList_Filter... Generating docs for nested compound pwiz::analysis::ProteinList_Filter::Predicate... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::ProteinList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::ProteinListFactory... Generating docs for compound pwiz::analysis::MS2Deisotoper... Generating docs for nested compound pwiz::analysis::MS2Deisotoper::Config... Generating docs for compound pwiz::analysis::MS2NoiseFilter... Generating docs for nested compound pwiz::analysis::MS2NoiseFilter::Config... Generating docs for compound pwiz::analysis::PrecursorMassFilter... Generating docs for nested compound pwiz::analysis::PrecursorMassFilter::Config... Generating docs for compound pwiz::analysis::PrecursorRecalculator... Generating docs for nested compound pwiz::analysis::PrecursorRecalculator::PrecursorInfo... Generating docs for compound pwiz::analysis::PrecursorRecalculatorDefault... Generating docs for nested compound pwiz::analysis::PrecursorRecalculatorDefault::Config... Generating docs for compound pwiz::analysis::SpectrumList_3D... Generating docs for compound pwiz::analysis::SpectrumList_ChargeFromIsotope... Generating docs for compound pwiz::analysis::SpectrumList_ChargeStateCalculator... Generating docs for compound pwiz::analysis::SpectrumList_Demux... Generating docs for nested compound pwiz::analysis::SpectrumList_Demux::Params... Generating docs for compound pwiz::analysis::SpectrumList_Filter... Generating docs for nested compound pwiz::analysis::SpectrumList_Filter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IndexSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_IdSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet... Generating do/build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:44: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:45: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:46: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:49: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:52: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:53: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:54: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:55: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.hpp:56: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:42: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:43: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:47: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:48: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:57: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:61: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:63: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:65: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:64: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:68: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/analysis/spectrum_processing/ThresholdFilter.hpp:72: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/common/diff_std.hpp:126: warning: expected whitespace after \a command cs for compound pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ActivationType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_Polarity... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_MzPresent... Generating docs for compound pwiz::analysis::SpectrumList_FilterPredicate_ThermoScanFilter... Generating docs for compound pwiz::analysis::SpectrumList_IonMobility... Generating docs for compound pwiz::analysis::SpectrumList_LockmassRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MetadataFixer... Generating docs for compound pwiz::analysis::SpectrumList_MZRefiner... Generating docs for compound pwiz::analysis::SpectrumList_MZWindow... Generating docs for compound pwiz::analysis::SpectrumList_PeakFilter... Generating docs for compound pwiz::analysis::IsolationWindowFilter... Generating docs for compound pwiz::analysis::SpectrumList_PeakPicker... Generating docs for compound pwiz::analysis::NoVendorPeakPickingException... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRecalculator... Generating docs for compound pwiz::analysis::SpectrumList_PrecursorRefine... Generating docs for nested compound pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo... Generating docs for compound pwiz::analysis::SpectrumList_ScanSummer... Generating docs for compound pwiz::analysis::SpectrumList_Smoother... Generating docs for compound pwiz::analysis::SpectrumList_Sorter... Generating docs for nested compound pwiz::analysis::SpectrumList_Sorter::Predicate... Generating docs for compound pwiz::analysis::SpectrumList_SorterPredicate_ScanStartTime... Generating docs for compound pwiz::analysis::SpectrumList_TitleMaker... Generating docs for compound pwiz::analysis::SpectrumList_ZeroSamplesFilter... Generating docs for compound pwiz::analysis::SpectrumListFactory... Generating docs for compound pwiz::analysis::ThresholdFilter... Generating docs for compound pwiz::analysis::Version... Generating docs for namespace pwiz::chemistry Generating docs for compound pwiz::chemistry::MassAbundance... Generating docs for compound pwiz::chemistry::Formula... Generating docs for compound pwiz::chemistry::IsotopeCalculator... Generating docs for compound pwiz::chemistry::IsotopeEnvelopeEstimator... Generating docs for nested compound pwiz::chemistry::IsotopeEnvelopeEstimator::Config... Generating docs for compound pwiz::chemistry::IsotopeTable... Generating docs for compound pwiz::chemistry::MZTolerance... Generating docs for namespace pwiz::chemistry::detail Generating docs for compound pwiz::chemistry::detail::Isotope... Generating docs for compound pwiz::chemistry::detail::Element... Generating docs for namespace pwiz::chemistry::Element Generating docs for namespace pwiz::chemistry::Element::Info Generating docs for compound pwiz::chemistry::Element::Info::Record... Generating docs for namespace pwiz::chemistry::Ion Generating docs for namespace pwiz::cv Generating docs for compound pwiz::cv::CV... Generating docs for compound pwiz::cv::CVTermInfo... Generating docs for namespace pwiz::data Generating docs for compound pwiz::data::BinaryIndexStream... Generating docs for compound pwiz::data::CVTranslator... Generating docs for compound pwiz::data::BaseDiffConfig... Generating docs for compound pwiz::data::Diff... Generating docs for compound pwiz::data::Index... Generating docs for nested compound pwiz::data::Index::Entry... Generating docs for compound pwiz::data::MemoryIndex... Generating docs for compound pwiz::data::Term... Generating docs for compound pwiz::data::OBO... Generating docs for compound pwiz::data::CVParam... Generating docs for compound pwiz::data::CVParamIs... Generating docs for compound pwiz::data::CVParamIsChildOf... Generating docs for compound pwiz::data::UserParam... Generating docs for compound pwiz::data::ParamContainer... Generating docs for compou/build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' nd pwiz::data::ParamGroup... Generating docs for compound pwiz::data::CalibrationParameters... Generating docs for compound pwiz::data::FrequencyData... Generating docs for compound pwiz::data::SampleDatum... Generating docs for namespace pwiz::data::diff_impl Generating docs for compound pwiz::data::diff_impl::HasID... Generating docs for compound pwiz::data::diff_impl::Same... Generating docs for compound pwiz::data::diff_impl::SameDeep... Generating docs for namespace pwiz::data::peakdata Generating docs for compound pwiz::data::peakdata::Peak... Generating docs for compound pwiz::data::peakdata::HandlerPeak... Generating docs for compound pwiz::data::peakdata::PeakFamily... Generating docs for compound pwiz::data::peakdata::Scan... Generating docs for compound pwiz::data::peakdata::Software... Generating docs for nested compound pwiz::data::peakdata::Software::Parameter... Generating docs for compound pwiz::data::peakdata::PeakData... Generating docs for compound pwiz::data::peakdata::Peakel... Generating docs for compound pwiz::data::peakdata::HandlerPeakel... Generating docs for compound pwiz::data::peakdata::Feature... Generating docs for compound pwiz::data::peakdata::HandlerFeature... Generating docs for compound pwiz::data::peakdata::FeatureFile... Generating docs for namespace pwiz::data::pepxml Generating docs for compound pwiz::data::pepxml::Specificity... Generating docs for compound pwiz::data::pepxml::SampleEnzyme... Generating docs for compound pwiz::data::pepxml::SearchDatabase... Generating docs for compound pwiz::data::pepxml::Q3RatioResult... Generating docs for compound pwiz::data::pepxml::RocDataPoint... Generating docs for compound pwiz::data::pepxml::ErrorPoint... Generating docs for compound pwiz::data::pepxml::DistributionPoint... Generating docs for compound pwiz::data::pepxml::MixtureModel... Generating docs for compound pwiz::data::pepxml::PeptideProphetSummary... Generating docs for compound pwiz::data::pepxml::PeptideProphetResult... Generating docs for compound pwiz::data::pepxml::AnalysisResult... Generating docs for compound pwiz::data::pepxml::AlternativeProtein... Generating docs for compound pwiz::data::pepxml::ModAminoAcidMass... Generating docs for compound pwiz::data::pepxml::ModificationInfo... Generating docs for compound pwiz::data::pepxml::Parameter... Generating docs for compound pwiz::data::pepxml::SearchScore... Generating docs for compound pwiz::data::pepxml::SearchHit... Generating docs for compound pwiz::data::pepxml::SearchResult... Generating docs for compound pwiz::data::pepxml::EnzymaticSearchConstraint... Generating docs for compound pwiz::data::pepxml::AminoAcidModification... Generating docs for compound pwiz::data::pepxml::SearchSummary... Generating docs for compound pwiz::data::pepxml::AnalysisTimestamp... Generating docs for compound pwiz::data::pepxml::SpectrumQuery... Generating docs for compound pwiz::data::pepxml::MSMSRunSummary... Generating docs for compound pwiz::data::pepxml::AnalysisSummary... Generating docs for compound pwiz::data::pepxml::DataFilter... Generating docs for compound pwiz::data::pepxml::DatasetDerivation... Generating docs for compound pwiz::data::pepxml::MSMSPipelineAnalysis... Generating docs for compound pwiz::data::pepxml::Match... Generating docs for compound pwiz::data::pepxml::MatchData... Generating docs for namespace pwiz::data::SampleDatumConstant Generating docs for namespace pwiz::data::unimod Generating docs for namespace pwiz::frequency Generating docs for compound pwiz::frequency::FrequencyEstimator... Generating docs for compound pwiz::frequency::FrequencyEstimatorPhysicalModel... Generating docs for nested compound pwiz::frequency::FrequencyEstimatorPhysicalModel::Config... Generating docs for compound pwiz::frequency::FrequencyEstimatorSimple... Generating docs for compound pwiz::frequency::MagnitudeLorentzian... Generating docs for compound pwiz::frequency::ParameterEstimator... Generating docs for compound pwiz::frequency::ParametrizedFunction... Generating docs for nested compound pwiz::frequency::ParametrizedFunction::ErrorFunction... Generating docs for compound pwiz::frequency::PeakDetector... Generating docs for compound pwiz::frequency::PeakDetectorMatchedFilter... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Config... Generating docs for nested compound pwiz::frequency::PeakDetectorMatchedFilter::Score... Generating docs for compound pwiz::frequency::PeakDetectorNaive... Generating docs for compound pwiz::frequency::TruncatedLorentzian... Generating docs for compound pwiz::frequency::TruncatedLorentzianEstimator... Generating docs for compound pwiz::frequency::TruncatedLorentzianParameters... Generating docs for namespace pwiz::frequency::DerivativeTest Generating docs for compound pwiz::frequency::DerivativeTest::VectorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice... Generating docs for compound pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorFunction... Generating docs for compound pwiz::frequency::DerivativeTest::AdaptedErrorDerivative... Generating docs for namespace pwiz::identdata Generating docs for compound pwiz::identdata::DefaultReaderList... Generating docs for compound pwiz::identdata::DelimReader... Generating docs for compound pwiz::identdata::DelimWriter... Generating docs for compound pwiz::identdata::DiffConfig... Generating docs for compound pwiz::identdata::Identifiable... Generating docs for compound pwiz::identdata::IdentifiableParamContainer... Generating docs for compound pwiz::identdata::BibliographicReference... Generating docs for compound pwiz::identdata::Contact... Generating docs for compound pwiz::identdata::Organization... Generating docs for compound pwiz::identdata::Person... Generating docs for compound pwiz::identdata::ContactRole... Generating docs for compound pwiz::identdata::Sample... Generating docs for compound pwiz::identdata::AnalysisSoftware... Generating docs for compound pwiz::identdata::Provider... Generating docs for compound pwiz::identdata::AnalysisSampleCollection... Generating docs for compound pwiz::identdata::SearchDatabase... Generating docs for compound pwiz::identdata::DBSequence... Generating docs for compound pwiz::identdata::Modification... Generating docs for compound pwiz::identdata::SubstitutionModification... Generating docs for compound pwiz::identdata::Peptide... Generating docs for compound pwiz::identdata::SearchModification... Generating docs for compound pwiz::identdata::Enzyme... Generating docs for compound pwiz::identdata::Enzymes... Generating docs for compound pwiz::identdata::Residue... Generating docs for compound pwiz::identdata::AmbiguousResidue... Generating docs for compound pwiz::identdata::MassTable... Generating docs for compound pwiz::identdata::Filter... Generating docs for compound pwiz::identdata::TranslationTable... Generating docs for compound pwiz::identdata::DatabaseTranslation... Generating docs for compound pwiz::identdata::SpectrumIdentificationProtocol... Generating docs for compound pwiz::identdata::Measure... Generating docs for compound pwiz::identdata::FragmentArray... Generating docs for compound pwiz::identdata::IonType... Generating docs for compound pwiz::identdata::PeptideEvidence... Generating docs for compound pwiz::identdata::SequenceCollection... Generating docs for compound pwiz::identdata::SpectrumIdentificationItem... Generating docs for compound pwiz::identdata::SpectraData... Generating docs for compound pwiz::identdata::SpectrumIdentificationResult... Generating docs for compound pwiz::identdata::SpectrumIdentificationList... Generating docs for compound pwiz::identdata::SpectrumIdentification... Generating docs for compound pwiz::identdata::ProteinDetectionProtocol... Generating docs for compound pwiz::identdata::PeptideHypothesis... Generating docs for compound pwiz::identdata::ProteinDetectionHypothesis... Generating docs for compound pwiz::identdata::ProteinAmbiguityGroup... Generating docs for compound pwiz::identdata::ProteinDetectionList... Generating docs for compound pwiz::identdata::ProteinDetection... Generating docs for compound pwiz::identdata::AnalysisCollection... Generating docs for compound pwiz::identdata::AnalysisProtocolCollection... Generating docs for compound pwiz::identdata::SourceFile... Generating docs for compound pwiz::identdata::Inputs... Generating docs for compound pwiz::identdata::AnalysisData... Generating docs for compound pwiz::identdata::DataCollection... Generating docs for compound pwiz::identdata::IdentData... Generating docs for compound pwiz::identdata::IdentDataFile... Generating docs for nested compound pwiz::identdata::IdentDataFile::WriteConfig... Generating docs for compound pwiz::identdata::CVMap... Generating docs for compound pwiz::identdata::RegexCVMap... Generating docs for compound pwiz::identdata::StringMatchCVMap... Generating docs for compound pwiz::identdata::CVIDMatchCVMap... Generating docs for compound pwiz::identdata::MascotReader... Generating docs for compound pwiz::identdata::id_p... Generating docs for compound pwiz::identdata::software_p... Generating docs for compound pwiz::identdata::sequence_p... Generating docs for compound pwiz::identdata::seq_p... Generating docs for compound pwiz::identdata::dbsequence_p... Generating docs for compound pwiz::identdata::organization_p... Generating docs for compound pwiz::identdata::person_p... Generating docs for compound pwiz::identdata::Pep2MzIdent... Generating docs for compound pwiz::identdata::Reader... Generating docs for nested compound pwiz::identdata::Reader::Config... Generating docs for compound pwiz::identdata::ReaderFail... Generating docs for compound pwiz::identdata::ReaderList... Generating docs for compound pwiz::identdata::Serializer_mzIdentML... Generating docs for nested compound pwiz::identdata::Serializer_mzIdentML::Config... Generating docs for compound pwiz::identdata::Serializer_pepXML... Generating docs for nested compound pwiz::identdata::Serializer_pepXML::Config... Generating docs for compound pwiz::identdata::PepXMLSpecificity... Generating docs for compound pwiz::identdata::Serializer_protXML... Generating docs for nested compound pwiz::identdata::Serializer_protXML::Config... Generating docs for compound pwiz::identdata::Serializer_Text... Generating docs for nested compound pwiz::identdata::Serializer_Text::Config... Generating docs for compound pwiz::identdata::TextWriter... Generating docs for compound pwiz::identdata::Version... Generating docs for namespace pwiz::identdata::examples Generating docs for namespace pwiz::identdata::IO Generating docs for namespace pwiz::identdata::References Generating docs for namespace pwiz::math Generating docs for compound pwiz::math::LinearLeastSquares... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >... Generating docs for compound pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >... Generating docs for compound pwiz::math::LinearSolver... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_LU >... Generating docs for compound pwiz::math::LinearSolver< LinearSolverType_QR >... Generating docs for compound pwiz::math::OrderedPair... Generating docs for compound pwiz::math::OrderedPairContainerRef... Generating docs for compound pwiz::math::Parabola... Generating docs for compound pwiz::math::Stats... Generating docs for namespace pwiz::math::MatchedFilter Generating docs for compound pwiz::math::MatchedFilter::ProductSpace... Generating docs for compound pwiz::math::MatchedFilter::SampledData... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase... Generating docs for compound pwiz::math::MatchedFilter::KernelTraitsBase< Y(*)(X)>... Generating docs for compound pwiz::math::MatchedFilter::Correlation... Generating docs for compound pwiz::math::MatchedFilter::KernelTraits... Generating docs for nested compound pwiz::math::MatchedFilter::KernelTraits::Dummy... Generating docs for namespace pwiz::math::MatchedFilter::details Generating docs for namespace pwiz::math::types Generating docs/build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp:51: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/LegacyAdapter.hpp:94: warning: Unsupported xml/html tag found for namespace pwiz::minimxml Generating docs for compound pwiz::minimxml::XMLWriter... Generating docs for nested compound pwiz::minimxml::XMLWriter::Attributes... Generating docs for nested compound pwiz::minimxml::XMLWriter::Config... Generating docs for nested compound pwiz::minimxml::XMLWriter::OutputObserver... Generating docs for compound pwiz::minimxml::basic_charcounter... Generating docs for nested compound pwiz::minimxml::basic_charcounter::category... Generating docs for namespace pwiz::minimxml::SAXParser Generating docs for compound pwiz::minimxml::SAXParser::saxstring... Generating docs for compound pwiz::minimxml::SAXParser::Handler... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Attributes::attribute... Generating docs for nested compound pwiz::minimxml::SAXParser::Handler::Status... Generating docs for namespace pwiz::msdata Generating docs for compound pwiz::msdata::BinaryDataEncoder... Generating docs for nested compound pwiz::msdata::BinaryDataEncoder::Config... Generating docs for compound pwiz::msdata::ChromatogramList_mzML... Generating docs for compound pwiz::msdata::ChromatogramListBase... Generating docs for compound pwiz::msdata::Reader_mzML... Generating docs for compound pwiz::msdata::Reader_mzXML... Generating docs for compound pwiz::msdata::Reader_MGF... Generating docs for compound pwiz::msdata::Reader_MSn... Generating docs for compound pwiz::msdata::Reader_BTDX... Generating docs for compound pwiz::msdata::Reader_mz5... Generating docs for compound pwiz::msdata::DefaultReaderList... Generating docs for compound pwiz::msdata::DiffConfig... Generating docs for compound pwiz::msdata::Index_mzML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromXML... Generating docs for compound pwiz::msdata::SpectrumIdentityFromMzXML... Generating docs for compound pwiz::msdata::LegacyAdapter_Instrument... Generating docs for compound pwiz::msdata::LegacyAdapter_Software... Generating docs for compound pwiz::msdata::MemoryMRUCache... Generating docs for compound pwiz::msdata::FileContent... Generating docs for compound pwiz::msdata::SourceFile... Generating docs for compound pwiz::msdata::Contact... Generating docs for compound pwiz::msdata::FileDescription... Generating docs for compound pwiz::msdata::Sample... Generating docs for compound pwiz::msdata::Component... Generating docs for compound pwiz::msdata::ComponentList... Generating docs for compound pwiz::msdata::Software... Generating docs for compound pwiz::msdata::Target... Generating docs for compound pwiz::msdata::ScanSettings... Generating docs for compound pwiz::msdata::InstrumentConfiguration... Generating docs for compound pwiz::msdata::ProcessingMethod... Generating docs for compound pwiz::msdata::DataProcessing... Generating docs for compound pwiz::msdata::IsolationWindow... Generating docs for compound pwiz::msdata::SelectedIon... Generating docs for compound pwiz::msdata::Activation... Generating docs for compound pwiz::msdata::Precursor... Generating docs for compound pwiz::msdata::Product... Generating docs for compound pwiz::msdata::ScanWindow... Generating docs for compound pwiz::msdata::Scan... Generating docs for compound pwiz::msdata::ScanList... Generating docs for compound pwiz::msdata::BinaryDataArray... Generating docs for compound pwiz::msdata::MZIntensityPair... Generating docs for compound pwiz::msdata::TimeIntensityPair... Generating docs for compound pwiz::msdata::SpectrumIdentity... Generating docs for compound pwiz::msdata::ChromatogramIdentity... Generating docs for compound pwiz::msdata::Spectrum... Generating docs for compound pwiz::msdata::Chromatogram... Generating docs for compound pwiz::msdata::IndexList... Generating docs for compound pwiz::msdata::SpectrumList... Generating docs for compound pwiz::msdata::SpectrumListSimple... Generating docs for compound pwiz::msdata::ChromatogramList... Generating docs for compound pwiz::msdata::ChromatogramListSimple... Generating docs for compound/build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/MSData.hpp:858: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/msdata/Serializer_mzXML.hpp:50: warning: Unsupported xml/html tag found pwiz::msdata::Run... Generating docs for compound pwiz::msdata::MSData... Generating docs for compound pwiz::msdata::MSDataFile... Generating docs for nested compound pwiz::msdata::MSDataFile::WriteConfig... Generating docs for compound pwiz::msdata::MSDataMerger... Generating docs for compound pwiz::msdata::Reader... Generating docs for nested compound pwiz::msdata::Reader::Config... Generating docs for compound pwiz::msdata::ReaderFail... Generating docs for compound pwiz::msdata::ReaderList... Generating docs for compound pwiz::msdata::Serializer_MGF... Generating docs for compound pwiz::msdata::Serializer_MSn... Generating docs for compound pwiz::msdata::Serializer_mzML... Generating docs for nested compound pwiz::msdata::Serializer_mzML::Config... Generating docs for compound pwiz::msdata::Serializer_mzXML... Generating docs for nested compound pwiz::msdata::Serializer_mzXML::Config... Generating docs for compound pwiz::msdata::SHA1OutputObserver... Generating docs for compound pwiz::msdata::SpectrumInfo... Generating docs for nested compound pwiz::msdata::SpectrumInfo::PrecursorInfo... Generating docs for compound pwiz::msdata::SpectrumIterator... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Config... Generating docs for nested compound pwiz::msdata::SpectrumIterator::Sieve... Generating docs for compound pwiz::msdata::SpectrumList_BTDX... Generating docs for compound pwiz::msdata::SpectrumList_MGF... Generating docs for compound pwiz::msdata::MSnHeader... Generating docs for compound pwiz::msdata::SpectrumList_MSn... Generating docs for compound pwiz::msdata::SpectrumList_mzML... Generating docs for compound pwiz::msdata::SpectrumList_mzXML... Generating docs for nested compound pwiz::msdata::SpectrumList_mzXML::index_not_found... Generating docs for compound pwiz::msdata::SpectrumListBase... Generating docs for compound pwiz::msdata::SpectrumListIonMobilityBase... Generating docs for compound pwiz::msdata::SpectrumListCache... Generating docs for nested compound pwiz::msdata::SpectrumListCache::CacheEntry... Generating docs for compound pwiz::msdata::SpectrumListWrapper... Generating docs for compound pwiz::msdata::SpectrumWorkerThreads... Generating docs for compound pwiz::msdata::TextWriter... Generating docs for compound pwiz::msdata::Version... Generating docs for compound pwiz::msdata::Reader_ABI... Generating docs for compound pwiz::msdata::Reader_ABI_T2D... Generating docs for compound pwiz::msdata::Reader_Agilent... Generating docs for compound pwiz::msdata::Reader_Bruker... Generating docs for compound pwiz::msdata::ExtendedReaderList... Generating docs for compound pwiz::msdata::Reader_Shimadzu... Generating docs for compound pwiz::msdata::Reader_Thermo... Generating docs for compound pwiz::msdata::Reader_UIMF... Generating docs for compound pwiz::msdata::Reader_UNIFI... Generating docs for compound pwiz::msdata::Reader_Waters... Generating docs for namespace pwiz::msdata::detail Generating docs for compound pwiz::msdata::detail::ChromatogramList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI... Generating docs for compound pwiz::msdata::detail::SpectrumList_ABI_T2D... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Agilent... Generating docs for compound pwiz::msdata::detail::SpectrumList_Agilent... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Bruker... Generating docs for compound pwiz::msdata::detail::SpectrumList_Bruker... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Shimadzu... Generating docs for compound pwiz::msdata::detail::SpectrumList_Shimadzu... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_Thermo... Generating docs for compound pwiz::msdata::detail::SpectrumList_UIMF... Generating docs for compound pwiz::msdata::detail::SpectrumList_UNIFI... Generating docs for compound pwiz::msdata::detail::ChromatogramList_Waters... Generating docs for compound pwiz::msdata::detail::SpectrumList/build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:81: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:82: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:84: warning: Found unknown command '@fixedPoint' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:99: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:118: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:119: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:131: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:147: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:148: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:161: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:173: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:174: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:185: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:210: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:211: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:226: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:237: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:238: warning: Found unknown command '@dataSize' /build/libpwiz-3.0.18342/pwiz/data/msdata/MSNumpress.hpp:250: warning: Found unknown command '@data' /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:130: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:132: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:133: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:136: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:138: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:139: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:142: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:144: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:145: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:148: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:150: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:151: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:154: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:156: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:157: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:160: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:162: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:163: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:166: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:168: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/proteome/Peptide.hpp:169: warning: Unsupported xml/html tag found _Waters... Generating docs for nested compound pwiz::msdata::detail::SpectrumList_Waters::VendorOptions... Generating docs for namespace pwiz::msdata::detail::Bruker Generating docs for namespace pwiz::msdata::detail::Thermo Generating docs for namespace pwiz::msdata::examples Generating docs for namespace pwiz::msdata::id Generating docs for namespace pwiz::msdata::IO Generating docs for namespace pwiz::msdata::MSNumpress Generating docs for namespace pwiz::msdata::References Generating docs for namespace pwiz::peptideid Generating docs for compound pwiz::peptideid::PeptideID... Generating docs for nested compound pwiz::peptideid::PeptideID::Iterator... Generating docs for nested compound pwiz::peptideid::PeptideID::IteratorInternal... Generating docs for nested compound pwiz::peptideid::PeptideID::Location... Generating docs for nested compound pwiz::peptideid::PeptideID::Record... Generating docs for compound pwiz::peptideid::nativeID_less... Generating docs for compound pwiz::peptideid::location_less... Generating docs for compound pwiz::peptideid::FlatRecordBuilder... Generating docs for compound pwiz::peptideid::MSInspectRecordBuilder... Generating docs for compound pwiz::peptideid::PeptideID_flat... Generating docs for compound pwiz::peptideid::PeptideID_pepXml... Generating docs for compound pwiz::peptideid::PeptideIDMap... Generating docs for namespace pwiz::proteome Generating docs for compound pwiz::proteome::DefaultReaderList... Generating docs for compound pwiz::proteome::DiffConfig... Generating docs for compound pwiz::proteome::DigestedPeptide... Generating docs for compound pwiz::proteome::Digestion... Generating docs for nested compound pwiz::proteome::Digestion::Config... Generating docs for nested compound pwiz::proteome::Digestion::const_iterator... Generating docs for compound pwiz::proteome::Modification... Generating docs for compound pwiz::proteome::ModificationList... Generating docs for compound pwiz::proteome::ModificationMap... Generating docs for compound pwiz::proteome::Peptide... Generating docs for compound pwiz::proteome::Fragmentation... Generating docs for compound pwiz::proteome::ProteinListCache... Generating docs for compound pwiz::proteome::ProteinListWrapper... Generating docs for compound pwiz::proteome::Protein... Generating docs for compound pwiz::proteome::IndexList... Generating docs for compound pwiz::proteome::ProteinList... Generating docs for compound pwiz::proteome::ProteinListSimple... Generating docs for compound pwiz::proteome::ProteomeData... Generating docs for compound pwiz::proteome::ProteomeDataFile... Generating docs for nested compound pwiz::proteome::ProteomeDataFile::WriteConfig... Generating docs for compound pwiz::proteome::Reader... Generating docs for compound pwiz::proteome::ReaderFail... Generating docs for compound pwiz::proteome::ReaderList... Generating docs for compound pwiz::proteome::Reader_FASTA... Generating docs for nested compound pwiz::proteome::Reader_FASTA::Config... Generating docs for compound pwiz::proteome::Serializer_FASTA... Generating docs for nested compound pwiz::proteome::Serializer_FASTA::Config... Generating docs for compound pwiz::proteome::TextWriter... Generating docs for compound pwiz::proteome::Version... Generating docs for compound pwiz::proteome::IPIFASTADatabase... Generating docs for nested compound pwiz::proteome::IPIFASTADatabase::Record... Generating docs for namespace pwiz::proteome::AminoAcid Generating docs for namespace pwiz::proteome::AminoAcid::Info Generating docs for compound pwiz::proteome::AminoAcid::Info::Record... Generating docs for namespace pwiz::proteome::examples Generating docs for namespace pwiz::tradata Generating docs for compound pwiz::tradata::DefaultReaderList... Generating docs for compound pwiz::tradata::DiffConfig... Generating docs for compound pwiz::tradata::Reader... Generating docs for compound pwiz::tradata::ReaderFail... Generating docs for compound pwiz::tradata::ReaderList... Generating docs for compound pwiz::tradata::Serializer_traML... Generating docs for compound pwiz::tradata::/build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:355: warning: Unsupported xml/html tag found /build/libpwiz-3.0.18342/pwiz/data/tradata/TraData.hpp:356: warning: Unsupported xml/html tag found TextWriter... Generating docs for compound pwiz::tradata::Contact... Generating docs for compound pwiz::tradata::Publication... Generating docs for compound pwiz::tradata::Software... Generating docs for compound pwiz::tradata::RetentionTime... Generating docs for compound pwiz::tradata::Prediction... Generating docs for compound pwiz::tradata::Evidence... Generating docs for compound pwiz::tradata::Validation... Generating docs for compound pwiz::tradata::Instrument... Generating docs for compound pwiz::tradata::Configuration... Generating docs for compound pwiz::tradata::Interpretation... Generating docs for compound pwiz::tradata::Protein... Generating docs for compound pwiz::tradata::Modification... Generating docs for compound pwiz::tradata::Peptide... Generating docs for compound pwiz::tradata::Compound... Generating docs for compound pwiz::tradata::Precursor... Generating docs for compound pwiz::tradata::Product... Generating docs for compound pwiz::tradata::Transition... Generating docs for compound pwiz::tradata::Target... Generating docs for compound pwiz::tradata::TargetList... Generating docs for compound pwiz::tradata::TraData... Generating docs for compound pwiz::tradata::TraDataFile... Generating docs for nested compound pwiz::tradata::TraDataFile::WriteConfig... Generating docs for compound pwiz::tradata::Version... Generating docs for namespace pwiz::tradata::examples Generating docs for namespace pwiz::tradata::IO Generating docs for namespace pwiz::tradata::References Generating docs for namespace pwiz::util Generating docs for compound pwiz::util::BinaryData... Generating docs for nested compound pwiz::util::BinaryData::const_iterator... Generating docs for nested compound pwiz::util::BinaryData::iterator... Generating docs for compound pwiz::util::CharIndexedVectorIterator... Generating docs for compound pwiz::util::CharIndexedVectorConstIterator... Generating docs for compound pwiz::util::CharIndexedVector... Generating docs for compound pwiz::util::ClickwrapPrompter... Generating docs for compound pwiz::util::Lock... Generating docs for compound pwiz::util::usage_exception... Generating docs for compound pwiz::util::user_error... Generating docs for compound pwiz::util::Image... Generating docs for nested compound pwiz::util::Image::Color... Generating docs for nested compound pwiz::util::Image::Point... Generating docs for compound pwiz::util::IntegerSet... Generating docs for nested compound pwiz::util::IntegerSet::Interval... Generating docs for nested compound pwiz::util::IntegerSet::Iterator... Generating docs for compound pwiz::util::IterationListener... Generating docs for nested compound pwiz::util::IterationListener::UpdateMessage... Generating docs for compound pwiz::util::IterationListenerRegistry... Generating docs for compound pwiz::util::mru_list... Generating docs for compound pwiz::util::MSIHandler... Generating docs for nested compound pwiz::util::MSIHandler::Record... Generating docs for compound pwiz::util::once_flag_proxy... Generating docs for compound pwiz::util::random_access_compressed_ifstream... Generating docs for compound pwiz::util::SHA1SymmetricFilter... Generating docs for compound pwiz::util::SHA1Filter... Generating docs for compound pwiz::util::SHA1_ostream... Generating docs for compound pwiz::util::SHA1Calculator... Generating docs for compound pwiz::util::shared_map... Generating docs for compound pwiz::util::TabHandler... Generating docs for compound pwiz::util::DefaultTabHandler... Generating docs for compound pwiz::util::VectorTabHandler... Generating docs for compound pwiz::util::TabReader... Generating docs for compound pwiz::util::Timer... Generating docs for compound pwiz::util::TestPathPredicate... Generating docs for compound pwiz::util::ReaderTestConfig... Generating docs for compound pwiz::util::virtual_map... Generating docs for namespace pwiz::util::Base64 Generating docs for namespace pwiz::util::env Generating docs for namespace pwiz::vendor_api Generating docs for namespace pwiz::vendor_api::Bruker Generating docs for namespace ralab Generating d/build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp:40: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end, std::vector< T > &res) is not documented: parameter 'end' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/cumsum.hpp:63: warning: The following parameter of ralab::base::cumsum(TIterator beg, TIterator end) is not documented: parameter 'end' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:58: warning: The following parameters of ralab::base::base::interpolate_linear(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:83: warning: The following parameters of ralab::base::base::interpolate_cosine(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:105: warning: The following parameters of ralab::base::base::interpolate_cubic(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/interpolate.hpp:130: warning: The following parameters of ralab::base::base::interpolate_Hermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, double tension=0, double bias=0, int start_index=0, typename std::iterator_traits< OutputIterator >::value_type epsilon=std::numeric_limits< typename std::iterator_traits< OutputIterator >::value_type >::epsilon()) are not documented: parameter 'endY' parameter 'endX' parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:199: warning: The following parameters of ralab::base::base::utilities::interpolateCubicHermite(YInputIterator begY, YInputIterator endY, XInputIterator begX, XInputIterator endX, OutputIterator out, TFunctor &functor, int start_index=0) are not documented: parameter 'begY' parameter 'endY' parameter 'begX' parameter 'endX' parameter 'start_index' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:283: warning: The following parameters of ralab::base::base::utilities::interpolateLinearCosine(YInputIterator y_p, YInputIterator endY, XInputIterator x_p, XInputIterator endX, OutputIterator out_p, TFunctor &interpolator, int start_index=0) are not documented: parameter 'endY' parameter 'endX' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/utilities/interpolation.hpp:149: warning: The following parameter of ralab::base::base::utilities::HermiteInterpolate::HermiteInterpolate(TReal tension, TReal bias, TReal epsilon=std::numeric_limits< TReal >::epsilon()) is not documented: parameter 'epsilon' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/filter.hpp:49: warning: The following parameters of ralab::base::filter::filter_sequence(TIterator dataBeg, TIterator dataEnd, TFilterIterator filterBeg, size_t fsize, TOutputIterator resBeg, bool circular=false, uint32_t sides=2) are not documented: parameter 'dataEnd' parameter 'fsize' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/gaussfilter.hpp:102: warning: The following parameter of ralab::base::filter::getGaussian1DerFilterQuantile(std::vector< TReal > &gauss1d, TReal fwhm=20, TReal quantile=0.1) is not documented: parameter 'quantile' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp:39: warning: The following parameters of ralab::base::filter::utilities::prepareData(TIterator dataBeg, TIterator dataEnd, size_t fsize, TContainer &res, bool mirror=false) are not documented: parameter 'dataBeg' parameter 'dataEnd' parameter 'fsize' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:81: warning: The following parameter of ralab::base::ms::LocalMinPeakArea::LocalMinPeakArea(TReal integwith, TReal threshold=.1) is not documented: parameter 'threshold' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/peakpickerqtof.hpp:177: warning: The following parameter of ralab::base::ms::PeakPicker::PeakPicker(TReal resolution, std::pair< TReal, TReal > &massrange, TReal width=2., TReal intwidth=2., TReal intensitythreshold=10., bool area=true, uint32_t maxnumberofpeaks=0, double c2d=1e-5) is not documented: parameter 'intensitythreshold' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/ms/simplepicker.hpp:49: warning: The following parameters of ralab::base::ms::SimplePicker::operator()(Tit beg, Tit end, Outit zerocrossings, size_t nzercross, std::ptrdiff_t lag=2) are not documented: parameter 'beg' parameter 'end' parameter 'zerocrossings' parameter 'lag' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp:36: warning: Found unknown command '\given' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp:83: warning: Found unknown command '\Assignment' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/resample/bucket1d.hpp:96: warning: The following parameters of ralab::base::resample::Bucket1D::operator()(InputIterator beg, InputIterator end, std::vector< std::pair< std::size_t, std::size_t > > &bucketPairs) are not documented: parameter 'end' parameter 'bucketPairs' /build/libpwiz-3.0.18342/pwiz/utility/findmf/base/base/scale.hpp:77: warning: The following parameters of ralab::base::stats::scale(InputIterator begin, InputIterator end, std::pair< typename std::iterator_traits< InputIterator >::value_type, typename std::iterator_traits< InputIterator >::value_type > &scaled, bool center=true, bool scale=true) are not documented: parameter 'begin' parameter 'end' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:470: warning: Found unknown command '@time' /build/libpwiz-3.0.18342/pwiz/data/misc/MinimumPepXML.hpp:471: warning: Found unknown command '@id' ocs for namespace ralab::base Generating docs for namespace ralab::base::base Generating docs for namespace ralab::base::base::utilities Generating docs for compound ralab::base::base::utilities::SeqPlus... Generating docs for compound ralab::base::base::utilities::SeqMinus... Generating docs for compound ralab::base::base::utilities::LinearInterpolate... Generating docs for compound ralab::base::base::utilities::CosineInterpolate... Generating docs for compound ralab::base::base::utilities::CubicInterpolate... Generating docs for compound ralab::base::base::utilities::HermiteInterpolate... Generating docs for namespace ralab::base::filter Generating docs for namespace ralab::base::filter::utilities Generating docs for compound ralab::base::filter::utilities::Gauss... Generating docs for compound ralab::base::filter::utilities::Gauss_1deriv... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat... Generating docs for compound ralab::base::filter::utilities::Mexican_Hat2... Generating docs for namespace ralab::base::ms Generating docs for compound ralab::base::ms::SimplePeakArea... Generating docs for compound ralab::base::ms::LocalMinPeakArea... Generating docs for compound ralab::base::ms::PeakPicker... Generating docs for compound ralab::base::ms::SimplePicker... Generating docs for namespace ralab::base::resample Generating docs for compound ralab::base::resample::Bin1D... Generating docs for compound ralab::base::resample::Bucket1D... Generating docs for compound ralab::base::resample::Convert2Dense... Generating docs for compound ralab::base::resample::SquareRoot... Generating docs for compound ralab::base::resample::SamplingWith... Generating docs for compound ralab::base::resample::PPMCompFunctor... Generating docs for compound ralab::base::resample::DaCompFunctor... Generating docs for compound ralab::base::resample::FTMSCompFunctor... Generating docs for namespace ralab::base::resample::utilities Generating docs for compound ralab::base::resample::utilities::meanfunctor... Generating docs for namespace ralab::base::stats Generating docs for compound ralab::base::stats::NthPower... Generating docs for namespace ralab::base::utils Generating docs for namespace ralab::constants Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 33731/65536 hits=341712 misses=37780 finished... rm -f doc/dox/html/jquery.js touch build-indep-stamp dh_testdir -i dh_testroot -i dh_installchangelogs -i install -d debian/libpwiz-doc/usr/share/doc/libpwiz-doc install -p -m0644 debian/changelog debian/libpwiz-doc/usr/share/doc/libpwiz-doc/changelog.Debian dh_installdocs -i install -p -m0644 debian/copyright debian/libpwiz-doc/usr/share/doc/libpwiz-doc/copyright install -d debian/libpwiz-doc/usr/share/doc-base/ install -p -m0644 debian/libpwiz-doc.doc-base debian/libpwiz-doc/usr/share/doc-base/libpwiz-documentation dh_install -i cp --reflink=auto -a ./doc/dox/html debian/libpwiz-doc/usr/share/doc/libpwiz-doc/ dh_installman -i install -d debian/libpwiz-doc/usr/share/man/man7/ install -p -m0644 ./debian/libpwiz-doc.7 debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 man-recode --to-code UTF-8 --suffix .dh-new debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 mv debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7.dh-new debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 chmod 0644 -- debian/libpwiz-doc/usr/share/man/man7/libpwiz-doc.7 dh_compress -i cd debian/libpwiz-doc chmod a-x usr/share/doc/libpwiz-doc/changelog.Debian usr/share/man/man7/libpwiz-doc.7 gzip -9nf usr/share/doc/libpwiz-doc/changelog.Debian usr/share/man/man7/libpwiz-doc.7 cd '/build/libpwiz-3.0.18342' dh_fixperms -i find debian/libpwiz-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libpwiz-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libpwiz-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libpwiz-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libpwiz-doc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libpwiz-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_installdeb -i install -d debian/libpwiz-doc/DEBIAN dh_lintian -i dh_gencontrol -i echo misc:Depends= >> debian/libpwiz-doc.substvars echo misc:Pre-Depends= >> debian/libpwiz-doc.substvars dpkg-gencontrol -plibpwiz-doc -ldebian/changelog -Tdebian/libpwiz-doc.substvars -Pdebian/libpwiz-doc chmod 0644 -- debian/libpwiz-doc/DEBIAN/control chown 0:0 -- debian/libpwiz-doc/DEBIAN/control dh_md5sums -i cd debian/libpwiz-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libpwiz-doc/DEBIAN/md5sums chown 0:0 -- debian/libpwiz-doc/DEBIAN/md5sums dh_builddeb -i dpkg-deb --build debian/libpwiz-doc .. dpkg-deb: building package 'libpwiz-doc' in '../libpwiz-doc_3.0.18342-4_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libpwiz_3.0.18342-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3416081 and its subdirectories I: Current time: Thu Aug 3 16:04:22 -12 2023 I: pbuilder-time-stamp: 1691121862 Fri Aug 4 04:04:24 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Aug 4 04:04:24 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Aug 4 05:51:19 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Aug 4 05:51:19 UTC 2023 I: libpwiz_3.0.18342-4_amd64.changes: Format: 1.8 Date: Sun, 27 Sep 2020 10:55:38 +0200 Source: libpwiz Binary: libpwiz-dev libpwiz-doc libpwiz-tools libpwiz-tools-dbgsym libpwiz3 libpwiz3-dbgsym Architecture: amd64 all Version: 3.0.18342-4 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libpwiz-dev - library to perform proteomics data analyses (devel files) libpwiz-doc - set of programs to perform proteomics data analyses (doc) libpwiz-tools - ProteoWizard command line tools libpwiz3 - library to perform proteomics data analyses (runtime) Closes: 970872 Changes: libpwiz (3.0.18342-4) unstable; urgency=low . * Fix FTCBFS: Pass --host to configure (Closes: #970872). Thanks to Helmut Grohne for the bug report and the patch. Checksums-Sha1: 7ed5ba9f641f8c5e65afb8fba51e33e353537dff 4969436 libpwiz-dev_3.0.18342-4_amd64.deb 79e89e9863ab49144ffae5a561e68df875512f07 4187708 libpwiz-doc_3.0.18342-4_all.deb 595fb129b225acd4f809286a4ba8f13f30fb16a3 2070212 libpwiz-tools-dbgsym_3.0.18342-4_amd64.deb 12b5fce5638b085ccf11c4359e67953580053396 121324 libpwiz-tools_3.0.18342-4_amd64.deb a4cf8b66b83ef99a1446835b194a2815bbe2d350 64490324 libpwiz3-dbgsym_3.0.18342-4_amd64.deb cafba8d94e6fc7117f30f4d40e61b5432e4bc70d 3045004 libpwiz3_3.0.18342-4_amd64.deb a2675b81d2b0dcaf33a18737ac32640607a59406 10069 libpwiz_3.0.18342-4_amd64.buildinfo Checksums-Sha256: 564bb63ecbf9e993ba0038ab0de4be7791b951b9d5e9d2b85d90ac77e4e14423 4969436 libpwiz-dev_3.0.18342-4_amd64.deb a38b24185960e87c15aeb6f7658c42a8078daf1c67a087729f613fc0c8296a9e 4187708 libpwiz-doc_3.0.18342-4_all.deb e6d283a065c39ef9d853f2501cd534189f119a4d7e0479bcd2f75409e415b470 2070212 libpwiz-tools-dbgsym_3.0.18342-4_amd64.deb 035d40f577d82a885280c90d4f2fce6f2ea927a715b5251f3dbe46016f0fe9da 121324 libpwiz-tools_3.0.18342-4_amd64.deb bdf7ed4dbe93e5c1e150811b374f8361efba39ee48a6d5511ee4bb76d7559d84 64490324 libpwiz3-dbgsym_3.0.18342-4_amd64.deb 21a742423fc8dcbe70ad6a6c0d22026f5b91c515fda5c36a3523f070815fd432 3045004 libpwiz3_3.0.18342-4_amd64.deb a3452f238cd505bc2e7ca9e4f25b9188e2606b1e5ac8fc3e25fe6bdad3e36f05 10069 libpwiz_3.0.18342-4_amd64.buildinfo Files: 02be78a38217a14bead3a4e1969f6e16 4969436 libdevel optional libpwiz-dev_3.0.18342-4_amd64.deb 967e2206aac6753294e328b874b1e6e9 4187708 doc optional libpwiz-doc_3.0.18342-4_all.deb 3c44fa396f3dfecae47e1a8573999e3a 2070212 debug optional libpwiz-tools-dbgsym_3.0.18342-4_amd64.deb 82d031434e1ab92a88b36e4af8380e7d 121324 science optional libpwiz-tools_3.0.18342-4_amd64.deb 18eece4c31ae95afffaa28c9676abe41 64490324 debug optional libpwiz3-dbgsym_3.0.18342-4_amd64.deb 5dcc9a15bcb79c29a7d732aed658b4dd 3045004 libs optional libpwiz3_3.0.18342-4_amd64.deb 34cbba751a4dd484cdd7c33c3f18e0fd 10069 libs optional libpwiz_3.0.18342-4_amd64.buildinfo Fri Aug 4 05:51:24 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.XSNfAJOX/libpwiz_3.0.18342-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.XSNfAJOX/libpwiz_3.0.18342-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.XSNfAJOX/libpwiz_3.0.18342-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.XSNfAJOX/b1/libpwiz_3.0.18342-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.XSNfAJOX/b2/libpwiz_3.0.18342-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 6.102s) 6.102s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 2.083s) 2.083s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Aug 4 05:51:32 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 4 05:51:32 UTC 2023 I: libpwiz from bullseye built successfully and reproducibly on amd64. Fri Aug 4 05:51:33 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Aug 4 05:51:33 UTC 2023 I: Submitting 12K b1/libpwiz_3.0.18342-4_amd64.buildinfo.asc Fri Aug 4 05:51:34 UTC 2023 I: Submitting 12K b2/libpwiz_3.0.18342-4_amd64.buildinfo.asc Fri Aug 4 05:51:35 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 4 05:51:35 UTC 2023 I: Done submitting .buildinfo files. Fri Aug 4 05:51:35 UTC 2023 I: Removing signed libpwiz_3.0.18342-4_amd64.buildinfo.asc files: removed './b1/libpwiz_3.0.18342-4_amd64.buildinfo.asc' removed './b2/libpwiz_3.0.18342-4_amd64.buildinfo.asc'