Thu Nov 18 18:07:11 UTC 2021 I: starting to build proftmb/bullseye/amd64 on jenkins on '2021-11-18 18:07' Thu Nov 18 18:07:11 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/16142/console.log Thu Nov 18 18:07:11 UTC 2021 I: Downloading source for bullseye/proftmb=1.1.12-9 --2021-11-18 18:07:12-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/proftmb/proftmb_1.1.12-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2003 (2.0K) Saving to: ‘proftmb_1.1.12-9.dsc’ 0K . 100% 98.6M=0s 2021-11-18 18:07:13 (98.6 MB/s) - ‘proftmb_1.1.12-9.dsc’ saved [2003/2003] Thu Nov 18 18:07:13 UTC 2021 I: proftmb_1.1.12-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proftmb Binary: proftmb Architecture: any Version: 1.1.12-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/proftmb Vcs-Git: https://salsa.debian.org/med-team/proftmb.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt Package-List: proftmb deb science optional arch=any Checksums-Sha1: 79c9e839a73b96958c9393bfaf864964e211c2e3 419748 proftmb_1.1.12.orig.tar.gz da0a84f43b257bc369f6a70cdf84443a6e2ac4d7 4912 proftmb_1.1.12-9.debian.tar.xz Checksums-Sha256: ec444d2efad9f590de69dfff40f9900f41329f71813c85ab1005297b8c3e98f4 419748 proftmb_1.1.12.orig.tar.gz 47aa79bf6cb2ca551882017f6389e8bfb07b94887401d9f33648ae2838616250 4912 proftmb_1.1.12-9.debian.tar.xz Files: 2e915f466148cc09eb91f77ecc02a6c6 419748 proftmb_1.1.12.orig.tar.gz cf7056d4a1238d26b9611a71e66a2a83 4912 proftmb_1.1.12-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+/VZoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF7gw/9FfKqIP8OUJkcrNKYiLMZju6o2Tjf9pcr UkPM+E2JDVGJBCLEGUj5CGw2V8C95PtGAs+/aLZjY8aWxvWel85+fnFEtJGSbXIu TwZnjcdI4rFJrqC2on1KsPVTYOO2khIn19HhGEIS4XOQgtDLQDc03f4JRmLjPucV CXMNQaqKlKv7zzAkfcxsmIKaOKP44zUHJFosoIITCYR+IZZslQULNJ9rZZcAn0qB BeJL+vmSD6jE+WrJxE9cmi2SXy0ED/6OT9eTKOaR/ESPC8AtKydi4/lo1ZwVLHHE DnyILWtb1fWNzkiVdbN8hsSNXBP+zfw1M42x0W6CFLCMJZRxTizFjRQBjV6bqsG7 2FS7R7lJGS6xgow27/duhvKACtVkMgzbF7w9rkWALFg7BGXRV7kC+T+K40uqEflQ qv9FT475jPnWailMa4IZschlCPLJUnDzPxaSoRlRscVsBYPAwyhPfsC3VrfFoN2j tJo8zGQQF31VWyXFFYeqReh5sWKWJdvZn7LLzHCQyRZggKjDnvmXCbXhHRM7u1KV Jue17UULAik6AcIekLxJYn1ymUZb1EnIayW66pEtRRRoz7WG2aq4X+PRP9C2CgwN Vus5sAU9Ll8MEcZFrsm5FmJbWBd16/byoTcmgNA6WfMR79l1HzY8FgNDNV+vID/G bke3giw0Rnc= =gxZF -----END PGP SIGNATURE----- Thu Nov 18 18:07:13 UTC 2021 I: Checking whether the package is not for us Thu Nov 18 18:07:13 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Nov 18 18:07:13 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Nov 18 18:08:58 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 21 12:30:23 -12 2022 I: pbuilder-time-stamp: 1671669023 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [proftmb_1.1.12-9.dsc] I: copying [./proftmb_1.1.12.orig.tar.gz] I: copying [./proftmb_1.1.12-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.pLC6zg18/trustedkeys.kbx': General error gpgv: Signature made Wed Nov 25 19:13:30 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proftmb_1.1.12-9.dsc dpkg-source: info: extracting proftmb in proftmb-1.1.12 dpkg-source: info: unpacking proftmb_1.1.12.orig.tar.gz dpkg-source: info: unpacking proftmb_1.1.12-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid-dnl-in-makefiles.diff dpkg-source: info: applying gcc-6.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1517846/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='774e0c0efb3b42c1a702d6cda3ac620d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1517846' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.cnejMpRnJO/pbuilderrc_p7XK --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.cnejMpRnJO/b1 --logfile b1/build.log proftmb_1.1.12-9.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 23 06:04 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/1517846/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on opt; however: Package opt is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libicu67{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} opt{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 20.7 MB of archives. After unpacking 79.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 help2man amd64 1.48.1 [190 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libgsl-dev amd64 2.6+dfsg-2 [1123 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 opt amd64 3.19-1.3+b1 [43.9 kB] Fetched 20.7 MB in 0s (74.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../05-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.3-2_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../proftmb_1.1.12-9_source.changes dpkg-buildpackage: info: source package proftmb dpkg-buildpackage: info: source version 1.1.12-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:9: installing './compile' configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for main in -lopt... yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gsl/gsl_errno.h usability... yes checking gsl/gsl_errno.h presence... yes checking for gsl/gsl_errno.h... yes checking opt.h usability... yes checking opt.h presence... yes checking for opt.h... yes checking for an ANSI C-conforming const... yes checking for --enable-debug... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j16 make[1]: Entering directory '/build/proftmb-1.1.12' make all-recursive make[2]: Entering directory '/build/proftmb-1.1.12' Making all in examples make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/proftmb-1.1.12/examples' Making all in src make[3]: Entering directory '/build/proftmb-1.1.12/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o proftmb.o proftmb.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Backward.o Backward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaumWelch.o BaumWelch.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Eval.o Eval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectA.o ExpectA.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectC.o ExpectC.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Forward.o Forward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GradientDescent.o GradientDescent.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMOutput.o HMMOutput.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HTools.o HTools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Output.o Output.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Par.o Par.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp In file included from Params.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from BaumWelch.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from ExpectC.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Krogh1Best.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from ExpectC.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from HMMOutput.h:4, from HMMOutput.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Par.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from HMMOutput.h:5, from HMMOutput.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ In file included from GradientDescent.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from HMMEval.h:5, from HMMEval.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ In file included from Backward.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:6, from HMMEval.h:5, from HMMEval.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from ExpectA.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from HMMOutput.cpp:1: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 21 | void DisplayArch(ostream&,Par&,uint,char* =""); | ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 24 | void PrintEmit(ostream&,Par&,uint,char* =""); | ^ In file included from HMMOutput.cpp:2: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:6, from ExpectA.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Forward.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from HTools.h:4, from HTools.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ In file included from Forward.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:5, from BaumWelch.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ In file included from HTools.h:5, from HTools.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Krogh1Best.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:5, from Load.h:4, from Load.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from Load.h:4, from Load.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from proftmb.cpp:14: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from GradientDescent.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from HTools.h:4, from Backward.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from TrainSeq.h:5, from Load.h:4, from Par.cpp:4: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:5, from Eval.h:11, from Eval.cpp:6: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from Eval.h:11, from Eval.cpp:6: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Eval.cpp:6: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); | ^~~~~ In file included from TrainSeq.h:5, from proftmb.cpp:15: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from proftmb.cpp:18: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 21 | void DisplayArch(ostream&,Par&,uint,char* =""); | ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 24 | void PrintEmit(ostream&,Par&,uint,char* =""); | ^ In file included from proftmb.cpp:20: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 9 | Z_Calibrate(set >&,int,double) throw (string&); | ^~~~~ In file included from proftmb.cpp:22: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 48 | float RelativeEntropy(vector& A, vector& B) throw (char *); | ^~~~~ proftmb.cpp:68:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 68 | const char *, double, Par&, const char*, bool) throw (string &); | ^~~~~ proftmb.cpp:273:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 273 | const char *datfile, double cut, Par& m, const char *name, bool multiQ) throw (string &) { | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Posterior.o Posterior.cpp Eval.cpp:654:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 654 | float RelativeEntropy(vector& A, vector& B) throw (char *){ | ^~~~~ Par.cpp:263:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 263 | void Par::LoadConnect(char* cf) throw (string&){ | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Regularization.o Regularization.cpp Par.cpp:348:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 348 | void Par::LoadL2L(char* l2lfile) throw (string&){ | ^~~~~ Par.cpp:415:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 415 | void Par::LoadL2A(char* l2afile) throw (string&){ | ^~~~~ Par.cpp:554:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 554 | void Par::LoadA2E(char* a2efile) throw (string&){ | ^~~~~ Par.cpp:652:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 652 | vector& redux) throw (string&){ | ^~~~~ Par.cpp:742:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 742 | void Par::ReadZCurve(char *ifile) throw (string&){ | ^~~~~ Par.cpp:763:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 763 | void Par::ReadNullFreq(char *ifile) throw (string&){ | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Seq.o Seq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp In file included from Posterior.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Posterior.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Regularization.cpp:7: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Seq.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Seq.cpp:4: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp In file included from structs.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp Seq.cpp:99:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 99 | bool Seq::InitLabels(SS& sdat) throw (string&){ | ^~~~~ Seq.cpp:313:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 313 | map Seq::Read(char* file) throw (string&){ | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Zscore.o Zscore.cpp In file included from TrainSeq.h:5, from Tally.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from Tally.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt In file included from TrainSeq.h:5, from TrainSeq.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from TrainSeq.h:6, from TrainSeq.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ In file included from Zscore.cpp:24: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 9 | Z_Calibrate(set >&,int,double) throw (string&); | ^~~~~ In file included from Viterbi.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 85 | bool InitLabels(set >&) throw (string&); | ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | static map > > Read(char*) throw (string&); | ^~~~~ In file included from Viterbi.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 34 | static void LoadL2L(char*) throw (string&); | ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 35 | static void LoadL2A(char*) throw (string&); | ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | static void LoadA2E(char*) throw (string&); | ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 37 | static void LoadConnect(char*) throw (string&); | ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 40 | vector&) throw (string&); | ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | static void ReadZCurve(char *) throw (string &); | ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | static void ReadNullFreq(char *) throw (string &); | ^~~~~ Zscore.cpp:36:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 36 | int windowsize,double zmax) throw (string&){ | ^~~~~ rm -f libhmm.a ar cru libhmm.a Backward.o BaumWelch.o Eval.o ExpectA.o ExpectC.o Forward.o GradientDescent.o HMMEval.o HMMOutput.o HTools.o Krogh1Best.o Load.o Output.o Par.o Params.o Posterior.o Regularization.o Seq.o Sov.o structs.o Tally.o Tools.o TrainSeq.o Viterbi.o Zscore.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libhmm.a g++ -g -O2 -fdebug-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o proftmb proftmb.o libhmm.a -lgsl -lgslcblas -lm -lopt help2man -n 'per-residue prediction of bacterial transmembrane beta barrels' --output=proftmb.1 --no-info --include=proftmb_example.txt ./proftmb make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_auto_test make -j16 check VERBOSE=1 make[1]: Entering directory '/build/proftmb-1.1.12' Making check in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making check in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j16 install DESTDIR=/build/proftmb-1.1.12/debian/proftmb AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/proftmb-1.1.12' Making install in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' /usr/bin/install -c -m 644 16761001.Q 1a0s_P.f.1.Q 1af6_A.f.2.Q 1bt9_A.f.3.Q 1fep_A.f.4.Q 1prn.f.5.Q 1qd5_A.f.6.Q 1qj9_A.f.7.Q 1qjp_A.f.8.Q CADN_HUMAN.Q example.Q example_dat.txt example_proftmb_pretty.txt example_proftmb_tabular.txt YQIB_ECOLI.Q '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' make[3]: Leaving directory '/build/proftmb-1.1.12/examples' make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making install in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12/src' /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' /usr/bin/install -c proftmb '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /usr/bin/install -c -m 644 proftmb.1 '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" cp "."/input/* "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/" rm -rf `find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -name .svn` /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type d -exec chmod 0755 {} \; find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type f -exec chmod 0644 {} \; /usr/bin/install -c -m 644 README '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' make install-data-hook make[4]: Entering directory '/build/proftmb-1.1.12' sed --in-place -e 's|__pkgdatadir__|/usr/share/proftmb|g' "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/options" make[4]: Leaving directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/proftmb-1.1.12' dh_compress -Xexample.Q make[1]: Leaving directory '/build/proftmb-1.1.12' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'proftmb' in '../proftmb_1.1.12-9_amd64.deb'. dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-9_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../proftmb_1.1.12-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1517846 and its subdirectories I: Current time: Wed Dec 21 12:32:06 -12 2022 I: pbuilder-time-stamp: 1671669126 Thu Nov 18 18:08:59 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Nov 18 18:08:59 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Nov 18 18:10:00 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Nov 18 18:10:00 UTC 2021 I: proftmb_1.1.12-9_amd64.changes: Format: 1.8 Date: Thu, 26 Nov 2020 08:05:00 +0100 Source: proftmb Binary: proftmb proftmb-dbgsym Architecture: amd64 Version: 1.1.12-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: proftmb - per-residue prediction of bacterial transmembrane beta barrels Changes: proftmb (1.1.12-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Set field Upstream-Contact in debian/copyright. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. * watch file standard 4 (routine-update) Checksums-Sha1: 4037f7bba8d9905fe5a8a7d274ab22de23680ee1 2382644 proftmb-dbgsym_1.1.12-9_amd64.deb fbd0a350e2f855950a484b59a4fa4df195e6db00 5178 proftmb_1.1.12-9_amd64.buildinfo be6490b46cc95208e5c89ed36e10666622ee40a3 343820 proftmb_1.1.12-9_amd64.deb Checksums-Sha256: 8425c195aaa3dd97559484df0071d627b03907b3e5b6af60cac8c9ffb175a12b 2382644 proftmb-dbgsym_1.1.12-9_amd64.deb baf4fd0fcce5def674dd88d42a11ae95a736d2141e04308127bf76ebecf294f3 5178 proftmb_1.1.12-9_amd64.buildinfo 88cc3fff9e556f9f9a35abd199da51ecfd2cf07fe57ccd9eebaf04453a193a94 343820 proftmb_1.1.12-9_amd64.deb Files: 4dd4f024f3f2bc90f74a44183021913d 2382644 debug optional proftmb-dbgsym_1.1.12-9_amd64.deb c32c0fbc72a7b22737f4630c93f4848d 5178 science optional proftmb_1.1.12-9_amd64.buildinfo 7f41b8e8197cb91d0e2710736224ea2f 343820 science optional proftmb_1.1.12-9_amd64.deb Thu Nov 18 18:10:02 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.cnejMpRnJO/proftmb_1.1.12-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.cnejMpRnJO/proftmb_1.1.12-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.cnejMpRnJO/proftmb_1.1.12-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.cnejMpRnJO/b1/proftmb_1.1.12-9_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.cnejMpRnJO/b2/proftmb_1.1.12-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.382s) 0.382s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.053s) 0.052s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Nov 18 18:10:03 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 18 18:10:03 UTC 2021 I: proftmb from bullseye built successfully and reproducibly on amd64. Thu Nov 18 18:10:05 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Nov 18 18:10:05 UTC 2021 I: Submitting 8.0K b1/proftmb_1.1.12-9_amd64.buildinfo.asc Thu Nov 18 18:10:06 UTC 2021 I: Submitting 8.0K b2/proftmb_1.1.12-9_amd64.buildinfo.asc Thu Nov 18 18:10:07 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 18 18:10:07 UTC 2021 I: Done submitting .buildinfo files. Thu Nov 18 18:10:07 UTC 2021 I: Removing signed proftmb_1.1.12-9_amd64.buildinfo.asc files: removed './b1/proftmb_1.1.12-9_amd64.buildinfo.asc' removed './b2/proftmb_1.1.12-9_amd64.buildinfo.asc'