Sat Oct 16 16:22:54 UTC 2021 I: starting to build python-biopython/bullseye/amd64 on jenkins on '2021-10-16 16:22' Sat Oct 16 16:22:54 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/45136/console.log Sat Oct 16 16:22:54 UTC 2021 I: Downloading source for bullseye/python-biopython=1.78+dfsg-4 --2021-10-16 16:22:54-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-biopython/python-biopython_1.78%2bdfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3246 (3.2K) Saving to: ‘python-biopython_1.78+dfsg-4.dsc’ 0K ... 100% 285M=0s 2021-10-16 16:22:54 (285 MB/s) - ‘python-biopython_1.78+dfsg-4.dsc’ saved [3246/3246] Sat Oct 16 16:22:54 UTC 2021 I: python-biopython_1.78+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-biopython Binary: python3-biopython, python-biopython-doc, python3-biopython-sql Architecture: any all Version: 1.78+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: http://biopython.org Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-biopython Vcs-Git: https://salsa.debian.org/med-team/python-biopython.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-setuptools Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy , flex, python3-reportlab , hevea , texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa , clustalo , clustalw , dialign , dssp (>= 4.0.0) , emboss , fasttree , mafft , muscle , ncbi-blast+ (>= 2.10.1-3) , phylip , phyml [any-amd64 any-i386] , prank , probcons , python3-networkx , python3-mysqldb , python3-matplotlib , python3-mmtf , python3-pil , python3-rdflib , python3-renderpm , python3-psycopg2 , python3-pygments , python3-scipy , python3-setuptools, python3-unittest2 , raxml [any-amd64 any-i386] , samtools , t-coffee , wise Package-List: python-biopython-doc deb doc optional arch=all python3-biopython deb python optional arch=any python3-biopython-sql deb python optional arch=all Checksums-Sha1: f0039998ade5d0b738302844513c9b9e3274e271 9807588 python-biopython_1.78+dfsg.orig.tar.xz 1c25fcfd2715598f5683c4a9be33922a7710431f 17896 python-biopython_1.78+dfsg-4.debian.tar.xz Checksums-Sha256: 325587e3869e4ebfa1f1b07b9032cde2498acc1671b7b0e124720234cc36fd47 9807588 python-biopython_1.78+dfsg.orig.tar.xz 51a82423bee3da1cdfa6fa7fa9098c42ce362607ffd15cd602b8c09d4650b006 17896 python-biopython_1.78+dfsg-4.debian.tar.xz Files: 1a129f11c73f68c58fe2faf7d47e5e13 9807588 python-biopython_1.78+dfsg.orig.tar.xz 838334b2cb8936fd177b7708ece2ef24 17896 python-biopython_1.78+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAl/M80cACgkQeTz2fo8N EdoFfBAApwX7ycDi+zgm0LStW1CJFnKqJVxSJ9YdY80ij7AH86oIzc96KpoEFmeB 6L7AMsv/lrQauTsBSThM25lLbW4vHakBcSrnYiotuLVm5yYZanBv6bu9yYBcCAbx TIbvt4rseQGMvOjJ3WCpzTqjeohPsYYURaTOohjpew8NPFGjprpui5MKnxC3XwIw q699eY2z9tj5NLErjy4ZGukwBCCqKkkxHnPyBwPC8V3KdEhfqVYpxaGqinR3k09r msWqeFdDA3y/loYl28/SD2HY9hL+ZAcZSTXjXCYWRnnNlCOBo95+y+wwSSTLSVgB dDxkrpVHKY6ouwBQZOPcMzALJt3W7bt4OzRWGMu0hG+ivE+y2yOTxmGDHAZUu02q 6aOawkuTt5Gv1+bv9K93/VdsA6yett01t67Ep1/tuhdkxc6JKl7dd5jyaKAB+fLp K96hf8pXoCUdBtdUq2ViwTa6WVmnN24WCIt7SvJ9bnPq4hn13NHJg9KoZ3+nuZkz hmgg70DQwW6D+BBizV+i47tNKJbhIckFT72nrwmGfhdMleV8jBm1ShRCcgVkLLuQ 2B6WCntkYSKcjDrN0M9/u8hFePR+jjW9dfhe1YYhvQSUaVS7grf6mUwX3Qvt9J+j DbBAMYQ8K7b5+YKS4HydV8+ZTm3FVzT3OEg1VxFSHddnnM7A580= =9Bp8 -----END PGP SIGNATURE----- Sat Oct 16 16:22:54 UTC 2021 I: Checking whether the package is not for us Sat Oct 16 16:22:54 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sat Oct 16 16:22:54 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sat Oct 16 16:50:41 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 16 04:22:55 -12 2021 I: pbuilder-time-stamp: 1634401375 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biopython_1.78+dfsg-4.dsc] I: copying [./python-biopython_1.78+dfsg.orig.tar.xz] I: copying [./python-biopython_1.78+dfsg-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.nN5eNM5F/trustedkeys.kbx': General error gpgv: Signature made Sun Dec 6 03:05:43 2020 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biopython_1.78+dfsg-4.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.78+dfsg dpkg-source: info: unpacking python-biopython_1.78+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.78+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying blastdbv4-impl.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying stabilize-phyml-test.patch dpkg-source: info: applying spelling-error-in-binaries.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying mkdssp4.path I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4035769/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='45d186ba7d574deea0270fb82c4abd2c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4035769' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.tX8h6D4lnG/pbuilderrc_Tjx6 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.tX8h6D4lnG/b1 --logfile b1/build.log python-biopython_1.78+dfsg-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Oct 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/4035769/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp (>= 4.0.0), emboss, fasttree, mafft, muscle, ncbi-blast+ (>= 2.10.1-3), phylip, phyml, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, raxml, samtools, t-coffee, wise dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on python3-reportlab; however: Package python3-reportlab is not installed. pbuilder-satisfydepends-dummy depends on hevea; however: Package hevea is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on clustalo; however: Package clustalo is not installed. pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on dialign; however: Package dialign is not installed. pbuilder-satisfydepends-dummy depends on dssp (>= 4.0.0); however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on emboss; however: Package emboss is not installed. pbuilder-satisfydepends-dummy depends on fasttree; however: Package fasttree is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on muscle; however: Package muscle is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+ (>= 2.10.1-3); however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on phylip; however: Package phylip is not installed. pbuilder-satisfydepends-dummy depends on phyml; however: Package phyml is not installed. pbuilder-satisfydepends-dummy depends on prank; however: Package prank is not installed. pbuilder-satisfydepends-dummy depends on probcons; however: Package probcons is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-mysqldb; however: Package python3-mysqldb is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-mmtf; however: Package python3-mmtf is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-renderpm; however: Package python3-renderpm is not installed. pbuilder-satisfydepends-dummy depends on python3-psycopg2; however: Package python3-psycopg2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pygments; however: Package python3-pygments is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-unittest2; however: Package python3-unittest2 is not installed. pbuilder-satisfydepends-dummy depends on raxml; however: Package raxml is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on t-coffee; however: Package t-coffee is not installed. pbuilder-satisfydepends-dummy depends on wise; however: Package wise is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} clustalo{a} clustalw{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dialign{a} dssp{a} dwz{a} emboss{a} emboss-data{a} emboss-lib{a} fasttree{a} file{a} flex{a} fontconfig-config{a} fonts-lmodern{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} hevea{a} ibverbs-providers{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libargtable2-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-program-options1.74.0{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcbor0{a} libcifpp1{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl3-gnutls{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libevent-core-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libgd3{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libharfbuzz0b{a} libhpdf-2.3.0{a} libhts3{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libice6{a} libicu67{a} libidn11{a} libijs-0.35{a} libimagequant0{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libkpathsea6{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.4-2{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmariadb3{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmpdec3{a} libncurses6{a} libnetpbm10{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenjp2-7{a} libopenmpi3{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a} libpng16-16{a} libpq5{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librdmacm1{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libucx0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxnvctrl0{a} libxpm4{a} libxrender1{a} libxt6{a} libzzip-0-13{a} m4{a} mafft{a} mailcap{a} man-db{a} mariadb-common{a} media-types{a} mime-support{a} muscle{a} mysql-common{a} ncbi-blast+{a} ncbi-data{a} netpbm{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} phylip{a} phyml{a} po-debconf{a} poppler-data{a} prank{a} preview-latex-style{a} probcons{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-isodate{a} python3-kiwisolver{a} python3-lib2to3{a} python3-linecache2{a} python3-matplotlib{a} python3-minimal{a} python3-mmtf{a} python3-msgpack{a} python3-mysqldb{a} python3-networkx{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-psycopg2{a} python3-pygments{a} python3-pyparsing{a} python3-rdflib{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-traceback2{a} python3-unittest2{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} raxml{a} readline-common{a} samtools{a} sensible-utils{a} t-coffee{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} ttf-bitstream-vera{a} ucf{a} wise{a} wise-data{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: amap-align ca-certificates curl dbus dialign-tx dvisvgm fonts-droid-fallback fsa javascript-common kalign libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libsoap-lite-perl libwww-perl libx11-protocol-perl libxml-simple-perl lmodern lynx mustang poa primer3 proda publicsuffix python3-gdal python3-html5lib python3-olefile python3-pydot python3-pygraphviz python3-sparqlwrapper python3-tk python3-yaml ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk tm-align wget x11-utils x11-xserver-utils xauth xdg-user-dirs 0 packages upgraded, 248 newly installed, 0 to remove and 0 not upgraded. Need to get 273 MB of archives. After unpacking 1274 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 flex amd64 2.6.4-8 [440 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 poppler-data all 0.4.10-1 [1602 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 tex-common all 6.16 [53.7 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libfido2-1 amd64 1.6.0-2 [53.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 openssh-client amd64 1:8.4p1-5 [929 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 bwa amd64 0.7.17-6+b1 [212 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libargtable2-0 amd64 13-1.1 [17.9 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 clustalo amd64 1.2.4-7 [260 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 dialign amd64 2.2.1-11 [139 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libcifpp1 amd64 1.0.1-3 [1447 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 dssp amd64 4.0.0-2 [128 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1 [289 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b1 [349 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 mysql-common all 5.8+1.0.7 [7464 B] Get: 88 http://deb.debian.org/debian bullseye/main amd64 mariadb-common all 1:10.5.12-0+deb11u1 [36.3 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 libmariadb3 amd64 1:10.5.12-0+deb11u1 [175 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libpq5 amd64 13.4-0+deb11u1 [180 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 emboss-lib amd64 6.6.0+dfsg-9 [2866 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 emboss-data all 6.6.0+dfsg-9 [61.1 MB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 emboss amd64 6.6.0+dfsg-9 [1073 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 fasttree amd64 2.1.11-2 [181 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libgs9-common all 9.53.3~dfsg-7+deb11u1 [734 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.20-2 [219 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u1 [350 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 libidn11 amd64 1.33-3 [116 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 libjbig2dec0 amd64 0.19-2 [67.2 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libopenjp2-7 amd64 2.4.0-3 [172 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 libgs9 amd64 9.53.3~dfsg-7+deb11u1 [2248 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 ghostscript amd64 9.53.3~dfsg-7+deb11u1 [97.9 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 libnetpbm10 amd64 2:10.0-15.4 [86.2 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 netpbm amd64 2:10.0-15.4 [1011 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 libkpathsea6 amd64 2020.20200327.54578-7 [172 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 libptexenc1 amd64 2020.20200327.54578-7 [64.5 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 libsynctex2 amd64 2020.20200327.54578-7 [83.2 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 libtexlua53 amd64 2020.20200327.54578-7 [132 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 libtexluajit2 amd64 2020.20200327.54578-7 [267 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1 [543 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 libteckit0 amd64 2.5.10+ds1-3 [329 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 libzzip-0-13 amd64 0.13.62-3.3 [55.7 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 texlive-binaries amd64 2020.20200327.54578-7 [10.1 MB] Get: 142 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 texlive-base all 2020.20210202-3 [20.8 MB] Get: 144 http://deb.debian.org/debian bullseye/main amd64 hevea amd64 2.34-2+b1 [1811 kB] Get: 145 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get: 146 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get: 149 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get: 150 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 153 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 154 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 156 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 157 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+b1 [338 kB] Get: 158 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get: 159 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get: 160 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2 [140 kB] Get: 161 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get: 162 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get: 164 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get: 165 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get: 166 http://deb.debian.org/debian bullseye/main amd64 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 167 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 168 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 169 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get: 170 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 460.91.03-1 [26.9 kB] Get: 171 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get: 172 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get: 173 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get: 174 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 175 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 176 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 177 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 178 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 179 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 180 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get: 181 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get: 182 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get: 183 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get: 184 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get: 185 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 186 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1 [552 kB] Get: 187 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get: 188 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get: 189 http://deb.debian.org/debian bullseye/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 190 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 191 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 192 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 193 http://deb.debian.org/debian bullseye/main amd64 libpython3-all-dev amd64 3.9.2-3 [1068 B] Get: 194 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1 [87.7 kB] Get: 195 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1 [97.6 kB] Get: 196 http://deb.debian.org/debian bullseye/main amd64 mafft amd64 7.475-1 [1051 kB] Get: 197 http://deb.debian.org/debian bullseye/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get: 198 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get: 199 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get: 200 http://deb.debian.org/debian bullseye/main amd64 openmpi-common all 4.1.0-10 [179 kB] Get: 201 http://deb.debian.org/debian bullseye/main amd64 openmpi-bin amd64 4.1.0-10 [238 kB] Get: 202 http://deb.debian.org/debian bullseye/main amd64 phylip amd64 1:3.697+dfsg-2 [919 kB] Get: 203 http://deb.debian.org/debian bullseye/main amd64 phyml amd64 3:3.3.20200621-1 [1781 kB] Get: 204 http://deb.debian.org/debian bullseye/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] Get: 205 http://deb.debian.org/debian bullseye/main amd64 preview-latex-style all 12.2-1 [201 kB] Get: 206 http://deb.debian.org/debian bullseye/main amd64 probcons amd64 1.12-13 [119 kB] Get: 207 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 208 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 209 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 210 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 211 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 212 http://deb.debian.org/debian bullseye/main amd64 python3-all-dev amd64 3.9.2-3 [1064 B] Get: 213 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 214 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get: 215 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 216 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 217 http://deb.debian.org/debian bullseye/main amd64 python3-isodate all 0.6.0-2 [25.0 kB] Get: 218 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get: 219 http://deb.debian.org/debian bullseye/main amd64 python3-linecache2 all 1.0.0-4 [12.8 kB] Get: 220 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 221 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 222 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 223 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3 [445 kB] Get: 224 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get: 225 http://deb.debian.org/debian bullseye/main amd64 python3-msgpack amd64 1.0.0-6+b1 [69.2 kB] Get: 226 http://deb.debian.org/debian bullseye/main amd64 python3-mmtf all 1.1.2-3 [16.8 kB] Get: 227 http://deb.debian.org/debian bullseye/main amd64 python3-mysqldb amd64 1.4.4-2+b3 [57.0 kB] Get: 228 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get: 229 http://deb.debian.org/debian bullseye/main amd64 python3-psycopg2 amd64 2.8.6-2 [120 kB] Get: 230 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 231 http://deb.debian.org/debian bullseye/main amd64 python3-rdflib all 5.0.0-1.1 [196 kB] Get: 232 http://deb.debian.org/debian bullseye/main amd64 python3-renderpm amd64 3.5.59-2 [80.0 kB] Get: 233 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get: 234 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get: 235 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 236 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get: 237 http://deb.debian.org/debian bullseye/main amd64 python3-traceback2 all 1.4.0-6 [16.6 kB] Get: 238 http://deb.debian.org/debian bullseye/main amd64 python3-unittest2 all 1.1.0-7 [75.5 kB] Get: 239 http://deb.debian.org/debian bullseye/main amd64 raxml amd64 8.2.12+dfsg-6+b4 [1434 kB] Get: 240 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get: 241 http://deb.debian.org/debian bullseye/main amd64 t-coffee amd64 13.41.0.28bdc39+dfsg-4 [1003 kB] Get: 242 http://deb.debian.org/debian bullseye/main amd64 texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get: 243 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 244 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 245 http://deb.debian.org/debian bullseye/main amd64 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 246 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-extra all 2020.20210202-3 [13.7 MB] Get: 247 http://deb.debian.org/debian bullseye/main amd64 wise-data all 2.4.1-23 [78.2 kB] Get: 248 http://deb.debian.org/debian bullseye/main amd64 wise amd64 2.4.1-23 [994 kB] Fetched 273 MB in 5s (56.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-biopython-1.78+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biopython_1.78+dfsg-4_source.changes dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.78+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-biopython-1.78+dfsg' dh_auto_clean install -d /build/python-biopython-1.78\+dfsg/debian/.debhelper/generated/_source/home pybuild --clean -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/build/python-biopython-1.78+dfsg/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/build/python-biopython-1.78+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/build/python-biopython-1.78+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild install -d /build/python-biopython-1.78\+dfsg/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-biopython-1.78+dfsg' dh_auto_build pybuild --build -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/kNN.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/bgzf.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/_utils.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Seq.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/File.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/xms.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/pfm.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/PDB/DSSP.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/vectors.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_data.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PICIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs creating /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/Bio creating build/temp.linux-x86_64-3.9/Bio/Align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Align/_aligners.c -o build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o -o /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.9/Python.h:145, from Bio/cpairwise2module.c:16: /usr/include/python3.9/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o -o /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-3.9/Bio/Nexus x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o -o /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-x86_64-3.9/Bio/PDB creating build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-3.9/Bio/motifs x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o -o /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-3.9/Bio/Cluster x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o -o /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-biopython-1.78+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o -o /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so cd Doc && make make[2]: Entering directory '/build/python-biopython-1.78+dfsg/Doc' sed "s/\@VERSION\@/1.78/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:655: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:713: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:809: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:817: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:818: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:831: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:548: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:554: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:558: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:561: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:571: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:645: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:766: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:849: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:931: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1172: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1231: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1241: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1283: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1384: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:945: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:953: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1091: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1312: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1684: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1697: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1770: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1800: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1803: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1830: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1830: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1858: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1962: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:2052: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2185: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2366: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2366: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2569: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2919: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3015: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:299: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:445: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:461: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1417: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1494: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1499: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1523: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 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'golub1989' ./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:711: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:782: Warning: 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:953: Warning: '_' occurring 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outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) hevea -exec ./version.sh -exec xxdate.exe -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial.htoc:361: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:1: 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:545: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' 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mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long 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'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:219: Warning: line too long ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:531: Warning: line too long ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:695: Warning: line too long ./Tutorial/chapter_seq_annot.tex:710: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:742: Warning: line too long ./Tutorial/chapter_seq_annot.tex:752: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:809: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:817: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:818: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:831: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:892: Warning: line too long ./Tutorial/chapter_seq_annot.tex:909: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:151: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:199: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:249: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:548: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:554: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:558: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:561: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:571: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:645: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:766: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:833: Warning: line too long ./Tutorial/chapter_seqio.tex:849: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:931: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1172: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1181: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1231: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1241: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1283: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1384: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:945: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:953: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1091: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1312: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1545: Warning: line too long ./Tutorial/chapter_align.tex:1547: Warning: line too long ./Tutorial/chapter_align.tex:1684: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1697: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1770: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1800: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1803: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1830: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1830: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1858: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1962: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:2008: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2052: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2185: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2190: Warning: line too long ./Tutorial/chapter_align.tex:2298: Warning: line too long ./Tutorial/chapter_align.tex:2299: Warning: line too long ./Tutorial/chapter_align.tex:2300: Warning: line too long ./Tutorial/chapter_align.tex:2330: Warning: line too long ./Tutorial/chapter_align.tex:2331: Warning: line too long ./Tutorial/chapter_align.tex:2332: Warning: line too long ./Tutorial/chapter_align.tex:2366: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2366: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2569: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2919: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3015: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:299: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 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occurring outside math mode ./Tutorial/chapter_pdb.tex:658: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:970: Warning: Undefined label: 'table:ic-attribs' ./Tutorial/chapter_pdb.tex:992: Warning: overfull line in array : array too wide ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:1015: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:346: Warning: line too long ./Tutorial/chapter_phylo.tex:360: Warning: Image in text ./Tutorial/chapter_phylo.tex:711: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:782: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:164: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:165: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:541: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:551: Warning: line too long ./Tutorial/chapter_motifs.tex:557: Warning: line too long ./Tutorial/chapter_motifs.tex:559: Warning: line too long ./Tutorial/chapter_motifs.tex:568: Warning: line too long ./Tutorial/chapter_motifs.tex:572: Warning: line too long ./Tutorial/chapter_motifs.tex:574: Warning: line too long ./Tutorial/chapter_motifs.tex:583: Warning: line too long ./Tutorial/chapter_motifs.tex:585: Warning: line too long ./Tutorial/chapter_motifs.tex:586: Warning: line too long ./Tutorial/chapter_motifs.tex:588: Warning: line too long ./Tutorial/chapter_motifs.tex:687: Warning: Undefined citation: 'matys2003' ./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:277: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:345: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:555: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:646: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:659: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:710: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:800: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancematrix' ./Tutorial/chapter_cluster.tex:821: Warning: Undefined label: 'sec:clustercentroids' ./Tutorial/chapter_cluster.tex:844: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:869: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:898: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:920: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:952: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:70: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:75: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:211: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:211: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:275: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:275: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:285: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:289: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:297: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_learning.tex:407: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: Undefined citation: 'vanderauwera2009' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:64: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:488: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:564: Warning: Image in text ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: Image in text ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode 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math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: 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Overfull \hbox (4.48064pt too wide) in paragraph at lines 874--877 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [53]) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 54 undefined on input line 931. 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[57] (./_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-fastq-conversion' on page 58 undefined on i nput line 1216. LaTeX Warning: Reference `sec:SeqIO-fasta-qual-conversion' on page 58 undefined on input line 1216. LaTeX Warning: Reference `sec:seq-reverse-complement' on page 58 undefined on i nput line 1231. (./_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 58 undefine d on input line 1241. 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1365--1369 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [60]) LaTeX Warning: Reference `chapter:cookbook' on page 61 undefined on input line 1384. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [61] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 62 undefined on input l ine 31. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 70 undefined on input l ine 444. Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [70]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [71]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [72]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 73 undefined on input l ine 633. 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LaTeX Warning: Float too large for page by 32.27644pt on input line 474. ) [117] [118 <./images/BlastRecord.png>] [119 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [120] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [121]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [122]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [123]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [124] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [125]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [126]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [127] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [128] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 130 undefined on input lin e 734. Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [131]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [132] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [133] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. 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(./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [171]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [172]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [173]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [174] (./Tutorial/chapter_pdb.tex Chapter 11. 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[192] [193] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [194] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [195] LaTeX Warning: Citation `hamelryck2003b' on page 196 undefined on input line 13 80. LaTeX Warning: Citation `majumdar2005' on page 196 undefined on input line 1381 . ) [196] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [197])) [198] (./Tutorial/chapter_phylo.tex Chapter 13. 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[204] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [205 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. 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LaTeX Warning: Citation `dehoon2004' on page 238 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 238 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 238 undefined on input line 30. [238] [239] [240] LaTeX Warning: Citation `snedecor1989' on page 241 undefined on input line 154. [241] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 242 undefined on input line 183. 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The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [248] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [249] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 250 undefined on input line 555. 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[258] Overfull \hbox (106.77225pt too wide) in paragraph at lines 927--929 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `hihara2001' on page 259 undefined on input line 952. (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [259]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 984--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [260] (./Tutorial/chapter_learning.tex Chapter 16. [261] LaTeX Warning: Reference `eq:OP' on page 262 undefined on input line 40. 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(./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex [286 <./images/three_track_simple.png>]) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex [287]) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 288 undefined on input li ne 894. LaTeX Warning: Reference `sec:gd_cross_links' on page 288 undefined on input li ne 901. LaTeX Warning: Reference `sec:gd_cross_links' on page 288 undefined on input li ne 901. Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 310 undefined on input line 478. 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[313] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8 A4A36.pygtex [314]) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 315 undefined on input line 800. (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [315] LaTeX Warning: Reference `sec:SeqIO-index' on page 316 undefined on input line 822. 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[319] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [320 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-gc-plot' on page 321 undefined on input line 1172. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 321 undefined on input line 1186. Excluding 'htmlonly' comment. 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(./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [324 <./images/dot_plot_scatter.png>]) LaTeX Warning: Reference `fig:paired-end-qual-plot' on page 325 undefined on in put line 1401. Excluding 'htmlonly' comment. LaTeX Warning: Reference `chapter:align' on page 325 undefined on input line 14 13. [325 <./images/SRR001666.png>] LaTeX Warning: Reference `chapter:align' on page 326 undefined on input line 14 20. (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:consensus' on page 326 undefined on input line 14 31. LaTeX Warning: Reference `sec:pssm' on page 326 undefined on input line 1432. LaTeX Warning: Reference `sec:getting_info_content' on page 326 undefined on in put line 1433. LaTeX Warning: Reference `sec:sub_matrix' on page 326 undefined on input line 1 434. LaTeX Warning: Reference `sec:summary_info' on page 326 undefined on input line 1440. (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [326]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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(./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [329]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3687DE99B121F342703021A11AC3AB867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A63394593860DFB229C6A3AEEAB5A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [330]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 331 undefined on input line 17 41. ) [331] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `sec:doctest' on page 332 undefined on input line 55. 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The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [339] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [340] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:freq_table' on page 341 undefined on input line 1 62. (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. 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(./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [58] (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (9.93459pt too wide) in paragraph at lines 831--836 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [59]) Overfull \hbox (4.48064pt too wide) in paragraph at lines 874--877 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [60]) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 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(./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex [66]) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1321--1323 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1365--1369 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [67]) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [85] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1124--1128 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [87] (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [89]) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1682--1685 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1966--2010 [][] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [99] [100]) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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paragraph at lines 2274--2275 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [105]) (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 474. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [128]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [131] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [132]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [134] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [141]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [142] [143] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [207] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [208 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [213] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [214] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 704--707 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [215] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [216]) [217] (./Tutorial/chapter_motifs.tex Chapter 14. 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[245] [246] [247] [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [249]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [250] [251] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [252] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [253] [254] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[326] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [327 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [328 <./images/gc_plot.png>] (./_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [329 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/ECC0A1626B0ABEA9CD4E0A0DA9142CD414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [330]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [331 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [332 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [338] (./Tutorial/chapter_testing.tex Chapter 21. 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Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [346] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [347] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [348]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [349] (./Tutorial/chapter_contributing.tex Chapter 23. 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(./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [58] (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (9.93459pt too wide) in paragraph at lines 831--836 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [59]) Overfull \hbox (4.48064pt too wide) in paragraph at lines 874--877 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [60]) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 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(./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex [66]) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1321--1323 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1365--1369 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [67]) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [85] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1124--1128 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [87] (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [89]) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1682--1685 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1966--2010 [][] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [99] [100]) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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paragraph at lines 2274--2275 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [105]) (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 474. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [128]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [131] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [132]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [134] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [141]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [142] [143] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [207] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [208 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [213] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [214] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 704--707 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [215] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [216]) [217] (./Tutorial/chapter_motifs.tex Chapter 14. 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[245] [246] [247] [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [249]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [250] [251] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [252] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [253] [254] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[326] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [327 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [328 <./images/gc_plot.png>] (./_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [329 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/ECC0A1626B0ABEA9CD4E0A0DA9142CD414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [330]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [331 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [332 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [338] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [339] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [340]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [341] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [342]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [343]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [344] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [345] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [346] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [347] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [348]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [349] (./Tutorial/chapter_contributing.tex Chapter 23. [350] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [351]) [352] (./Tutorial/chapter_appendix.tex Chapter 24. 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Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- LaTeX Warning: Reference `sub:The-Structure-object' on page 4 undefined on inpu t line 335. [4] [5] LaTeX Warning: Reference `cap:SMCRA' on page 6 undefined on input line 548. [6] [7 <./images/smcra.png (PNG copy)>] [8] LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 750. LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 779. LaTeX Warning: Reference `sub:Analysis' on page 9 undefined on input line 821. [9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 157300 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. 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The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 159026 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 159026 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/build/python-biopython-1.78+dfsg/Doc' make[1]: Leaving directory '/build/python-biopython-1.78+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-biopython-1.78+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 3.9 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:232: set -e; \ mkdir -p /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home; \ mkdir -p /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Doc/Tutorial /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Doc/examples /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Tests /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build; \ cd /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home python3.9 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_FSSP ... ok test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman' ok test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics Can't setFont(Times-Roman) missing the T1 files? Originally : makeT1Font() argument 2 must be str, not None test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py:403: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray training_outputs = array( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py:411: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray training_states = array( ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -mt_mode,-sorthits,-sorthsps,-subject_besthit) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ rpstblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -mt_mode,-sorthits,-sorthsps) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_DSSP ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_Polypetide ... ok test_PDB_SMCRA ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module. warnings.warn( ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2309: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( ok test_geo ... ok test_kNN ... ok test_lowess ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__init__.py:11: BiopythonDeprecationWarning: Bio.Statistics has been deprecated, and we intend to remove it in a future release of Biopython. warnings.warn( ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_raxml_tool ... ok test_samtools_tool ... ok test_seq ... /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2334: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future. warnings.warn( ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Crystal docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.FSSP docstring test ... ok Bio.FSSP.FSSPTools docstring test ... ok Bio.FSSP.fssp_rec docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.Statistics docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.SubsMat docstring test ... ok Bio.SubsMat.FreqTable docstring test ... ok Bio.SubsMat.MatrixInfo docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.chisq docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 517 tests in 965.083 seconds Skipping any tests requiring internet access Python version: 3.9.2 (default, Feb 28 2021, 17:03:44) [GCC 10.2.1 20210110] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-HBFDj5gg mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/build/python-biopython-1.78+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ debian/.debhelper/generated/python-biopython-doc/ debian/python-biopython-doc/ debian/.debhelper/generated/python3-biopython-sql/ debian/python3-biopython-sql/ rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-biopython-1.78+dfsg' dh_auto_install install -d /build/python-biopython-1.78\+dfsg/debian/tmp pybuild --install -i python{version} -p 3.9 --dest-dir /build/python-biopython-1.78\+dfsg/debian/tmp I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-biopython-1.78+dfsg/debian/tmp running install running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biopython-1.78+dfsg/debian/tmp/usr creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/out.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaHrEdtC creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaZRPP4g copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/output.best.nex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/output.best.fas -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_translate.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_seq.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_samtools_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_raxml_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_psw.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prosite2.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prosite1.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prodoc.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phyml_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype_fit.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise_aligner.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2_no_C.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/pairwise2_testCases.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_motifs_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_motifs.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_lowess.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_kNN.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_geo.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_codonalign.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_cellosaurus.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_bgzf.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_align_substitution_matrices.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_align.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_wise.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Wise.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Uniprot.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniProt_GOA.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniGene.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Tutorial.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TreeConstruction.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TogoWS.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TCoffee_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SwissProt.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SubsMat.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SffIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Seq_objs.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqUtils.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqRecord.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_write.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_features.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Gck.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqFeature.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_write.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_model.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_legacy.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/search_tests_common.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SVDSuperimposer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Scop.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Residues.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Raf.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Hie.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Dom.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Des.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Cla.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Astral.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Restriction.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_RCSBFormats.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_QCPSuperimposer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ProtParam.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Probcons_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Prank_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_networkx.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_NeXML.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_CDAO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PhyloXML.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phd.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Pathway.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PQR.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_vectors.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_internal_coords.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Superimposer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_SMCRA.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Polypetide.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_PDBParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_PDBIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_NACCESS.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_KDTree.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Exposure.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Disordered.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Dice.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_DSSP.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDBList.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_yn00.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_codeml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_baseml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Nexus.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NaiveBayes.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NMR.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBI_qblast.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBIXML.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBITextParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Muscle_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Medline.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_MarkovModel.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Mafft_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_MafIO_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_LogisticRegression.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KeyWList.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_nographics.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_graphics_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_graphics.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMGeneral.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMCasino.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsGeneral.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsDistribution.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsChromosome.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GenomeDiagram.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GenBank.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_File.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Fasttree_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_FSSP.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ExPASy.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Enzyme.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_parser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EmbossPrimer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Emboss.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EMBL_unittest.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Dialign_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Crystal.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Consensus.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Compass.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ColorSpiral.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CodonTable.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Cluster.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Clustalw_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Chi2.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CAPS.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Blast_Record.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/common_BioSQL_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/seq_tests_common.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/common_BioSQL.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BWA_tool.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Application.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignInfo.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_convert.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Affy.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Ace.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_internet.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phyml_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_translate.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_seq.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_samtools_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_raxml_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_psw.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prosite2.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prosite1.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prodoc.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phenotype_fit.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phenotype.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise_aligner.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2_no_C.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_lowess.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_kNN.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_geo.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_codonalign.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_cellosaurus.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_bgzf.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align_substitution_matrices.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Wise.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Uniprot.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_UniProt_GOA.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_UniGene.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Tutorial.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TreeConstruction.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TogoWS.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TCoffee_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SwissProt.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SubsMat.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SffIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Seq_objs.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqUtils.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqRecord.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_write.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_features.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Xdna.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SnapGene.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SeqXML.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_QualityIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_PdbIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_NibIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Insdc.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Gck.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_FastaIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_AbiIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqFeature.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_write.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_model.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_legacy.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_interproscan_xml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer2_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hhsuite2_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_fasta_m10.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_tab_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_tab.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SVDSuperimposer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Scop.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Residues.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Raf.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Hie.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Dom.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Des.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Cla.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Astral.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Restriction.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_RCSBFormats.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_QCPSuperimposer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ProtParam.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Probcons_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Prank_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_networkx.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_matplotlib.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_NeXML.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_CDAO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PhyloXML.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phd.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Pathway.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PQR.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_vectors.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_parse_pdb_header.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_internal_coords.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Superimposer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_StructureAlignment.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_SMCRA.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Polypetide.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_NACCESS.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIFParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIFIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIF2Dict.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_KDTree.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_FragmentMapper.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Exposure.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Disordered.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Dice.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_DSSP.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDBList.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_yn00.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_codeml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_baseml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Nexus.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NaiveBayes.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NMR.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_qblast.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBIXML.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBITextParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Muscle_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Medline.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Mafft_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MafIO_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_LogisticRegression.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KeyWList.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_nographics.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_graphics_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_graphics.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KEGG_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KEGG.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_HMMGeneral.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_HMMCasino.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsGeneral.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsDistribution.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsChromosome.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsBitmaps.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GenomeDiagram.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GenBank.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_File.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Fasttree_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_FSSP.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ExPASy.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Enzyme.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez_parser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EmbossPrimer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Emboss.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EMBL_unittest.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Dialign_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Crystal.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Consensus.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Compass.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ColorSpiral.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CodonTable.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Cluster.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Clustalw_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ClustalOmega_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Chi2.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CAPS.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Blast_Record.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_sqlite3_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_sqlite3.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_psycopg2_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BWA_tool.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Application.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignInfo.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_convert.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_PhylipIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_MauveIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_FastaIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_EmbossIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_ClustalIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Affy.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Ace.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/seq_tests_common.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/search_tests_common.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/run_tests.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/requires_wise.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/requires_internet.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlates.csv -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlate_2.json -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlate.json -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plates.csv -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plate_2.json -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plate.json -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/BadPlate.json -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/pairwise2_testCases.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/msf/W_prot.msf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/msf/DOA_prot.msf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/transfac.dat -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/minimal_test.meme -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.adh.classic.oops.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.html -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.html -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/alignace.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/abdb.xms -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/SRF.pfm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/REB1.pfm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/MA0056.1.transfac -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/Arnt.sites -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL_online.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro5.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro4.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro3.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro2.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro1.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl5.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl4.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl3.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl2.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl1.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_pro.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_nucl.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/drosophilla.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/adh.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/biosql.ini.sample -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/biosql.ini.appveyor -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-c.xprt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-b.xdna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-a.xdna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Wise/human_114_g02_exons.fna_01 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Wise/human_114_g01_exons.fna_01 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/goa_yeast.gaf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Mdm_partial.data -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Hs.2.data -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Eca.1.2425.data -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/upgma.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/trees.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/test.log -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/strict_refs.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/pars3.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/nj_min.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/nj.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/msa.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/majority_ref.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/consensus_refs.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/adam_refs.tre -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni003 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni002 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni001 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp016 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp015 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp013 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp012 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp011 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp010 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp009 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp008 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp007 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp006 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp005 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp003 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp002 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp001 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.rdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.list -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.gff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/keywlist2.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/keywlist.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/README -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/R5HY77.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/Q13639.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/Q13639.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P97881.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P84001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P60137.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0CK95.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0A186.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/O23729.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/F2CXE6.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/F2CXE6.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/redAltAADistrib.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/redAADistrib.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/protein_freq.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/protein_count.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/acc_rep_mat.pik -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/aaDistrib.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Stockholm/simple.sth -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Stockholm/funny.sth -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-e.dna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-d.dna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/pFA-KanMX4.dna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/rna_example.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/protein_example.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/global_species_example.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/dna_example.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/corrupt_example2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/corrupt_example1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam2.sam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam1.sam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/readme.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_refresh.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_header.sam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_header.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.sam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam2_sorted.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam2.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam1_sorted.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam1.bam -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Saf copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Saf/saf1.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Saf creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/testDom.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/raftest.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.des.scop.txt_test -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/triple_sff.idx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/paired.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/greek.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/README.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/seqs.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/bt001 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/EDD_RAT.dat -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.htm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/pvuii.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/pvuii.htm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/foki.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/foki.htm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/crei.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/crei.htm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.htm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/bamii.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/bamii.htm -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/zero_length.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/tricky.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_faked.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_example.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_faked.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_93.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_original_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_faked.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example_dos.fastq.bgz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example_dos.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.qual -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq.gz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq.bgz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_title.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_tabs.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_spaces.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_short_qual.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_vtab.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_tab.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_space.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_null.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_escape.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_del.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_no_qual.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_long_qual.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_double_seq.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_double_qual.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_diff_ids.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00546.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00488.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00432.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00165.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00159.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00107.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo3.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo2.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3space.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3line.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2space.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2line.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/big.gen -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/README -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/made_up.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/example.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/distribution.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/bcl_2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/apaf.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/sequential2.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/sequential.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/reference_dna2.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/reference_dna.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/random.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/interlaced2.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/interlaced.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/horses.tree -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/horses.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/hennigian.phy -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_solexa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_454 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd2 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PQR copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PQR/1A80.pqr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PQR creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/occupancy.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/lib_10_z_5.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/ions.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/header.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/disordered.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/d256ba_.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/alignment_file.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/a_structure.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/a_structure.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Wilke_RASA.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Sander_RASA.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Miller_RASA.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4ZHL.mmtf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4ZHL.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4Q9R_min.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4CUP.mmtf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4CUP.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/3JQH.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2n0n_M1.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2XHE.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2XHE.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2OFG.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG_noheader.dssp -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.dssp -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1SSU_mod.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1SSU_mod.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1MOM_min.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1LCD.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1LCD.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1AS5.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.xyzr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.rsa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.pdb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.mmtf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.cif -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.asa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/gen_results.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/species.tree -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/bad.tree -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/bad_results.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/species.tree -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad3.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad2.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad1.ctl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/README.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/longnames.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednum.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednames.phylip -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/alignment.phylip -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_littleendian.nib -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_bigendian.nib -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_littleendian.nib -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_bigendian.nib -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test_Nexus_input.nex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test.new -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/int_node_labels.nwk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/codonposset.nex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/bats.nex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeuralNetwork/repeat.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeuralNetwork/enolase.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees-uris.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/treebase-record.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/tolweb.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/timetree.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/taxa.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/sets.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/phenoscape.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/nexml.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_types.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_taxa.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/edgelabels.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/characters.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NMR/out_example.xpk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NMR/noed.xpk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/clustalw.pir -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/DMB_prot.pir -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/DMA_nuc.pir -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/Cw_prot.pir -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/B_nuc.pir -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta9.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta2.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta8.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta7.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta6.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta4.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta3.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result3.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result2.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result1.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple_short.xmfa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa.bbcols -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa.backbone -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/wrong_version.idx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/unfinished.idx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_test.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/length_coords_mismatch.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/invalid.idx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/humor.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/corrupt.idx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/cnksr3.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/bundle_without_target.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/bug2453.maf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map03070.png -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map01100.png -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map00950.rea -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko03070.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko01100.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00253.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00010.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/gene.sample -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.sample -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.new -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.irregular -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.4letter -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/compound.sample -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/compound.irregular -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/InterProScan copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/InterProScan/test_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/InterProScan creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/README.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhpred_9590198.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/allx.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/README.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits.hhr -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_transparency.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_transparency.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_colors.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_widths.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_original.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_original.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_7.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_1.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/simple_bar.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/multi_bar.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.svg -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.eps -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/random_organism.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph_c.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.svg -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.svg -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/square_test.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/spiral_test.pdf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/README -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_series.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_platform.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_family.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_dual.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM804.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM700.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM691.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM645.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSE16.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/tsa_acropora.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/tls_KDHP01000000.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/protein_refseq2.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/protein_refseq.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/pri1.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/pBAD30.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/origin_line.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/one_of.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/noref.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/no_origin_no_end.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/no_end_marker.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/negative_location.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/iro.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_structured_comment.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_product.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_misc_feature.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/gbvrl1_start.seq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/extra_keywords.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_version.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_accession.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/dbsource_wrap.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/cor6_6.gb.bgz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/cor6_6.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/blank_seq.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_loc_wrap.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/arab1.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NT_019265.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NP_416719.gbwithparts -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.tsv -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.fna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.ffn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.faa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.gb.bgz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.faa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/KF527485_output.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/KF527485.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/HM138502_output.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/HM138502.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/GU949562.1.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/EU851978_output.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/EU851978.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/DS830848.gb -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/1MRR_A.gp -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Gck copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Gck/artificial.gck -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Gck creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/multi.fna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802x.fna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802lc.fna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802.fna -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001422.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/tc_out.msf -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/wisteria.nu -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/sweetpea.nu -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/rosemary.pro -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/rose.pro -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/phlox.nu -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output016.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output015.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output014.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output013.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output012.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output011.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output010.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output009.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output008.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output007.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output006.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output005.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output004.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output003.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output002.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output001.m10 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/lupine.nu -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/loveliesbleeding.pro -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/lavender.nu -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/flowers.pro.gz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/fa01 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f003 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f002 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f001 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/elderberry.nu -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/dups.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/centaurea.nu -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/aster_no_wrap.pro -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/aster.pro -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/README -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/FSSP/1cnv.fssp -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/ExtendedPhylip/primates.phyx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/ExtendedPhylip creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_none.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/README.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/valine.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/proline.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lipoprotein.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lactate.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/taxonomy.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed7.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed6.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed5.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed4.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed3.html -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/protein.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/ncbi_mim.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/journals.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary9.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary8.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary7.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary6.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary5.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary4.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary3.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/espell.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch8.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch7.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch6.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch5.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch4.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch3.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost3.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink8.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink7.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink6.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink5.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink4.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink3.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo4.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo3.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery1.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/efetch_schemas.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/biosample.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/water2.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/water.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/short.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/no_oligo.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/needle_asis.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/needle.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_simple.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_pair.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/internal_oligo.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_reverse.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_forward.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/bac_find.psearch -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/bac_find.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/alignret.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK_full.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK.primer3 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/xx_after_co.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/patents.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/location_wrap.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/kipo_prt_sample.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/hla_3260_sample.imgt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/epo_prt_selection.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/embl_with_0_line.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/U87107.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/TRBG361.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/SC10H5.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/RepBase23.02.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/Human_contigs.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DS830848.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited2.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/AE017046.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/AAA03323.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/A04195.imgt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/101ma_no_coords.embl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Compass/comtest2 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Compass/comtest1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/cyano.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/README -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/temp horses.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/protein.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/promals3d.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/opuntia.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/odd_consensus.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/hedgehog.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/cw02.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CDAO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/CDAO/test.cdao -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CDAO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_35_002.pslx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_005.pslx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_004.pslx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_003.pslx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_002.pslx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_001.pslx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_35_002.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_35_001.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_005.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_004.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_003.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_002.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_001.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/mirna.pslx -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/README.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastx_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastn_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastx_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastp_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastn_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/wnts.xml.bgz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/wnts.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2230_blastp_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2222_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2222L_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2221L_blastp_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2220L_blastx_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2220L_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2216L_tblastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2215L_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2208L_psiblast_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastp_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2201L_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2102L_blastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2014L_psiblast_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2014L_blastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2012L_psiblast_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastx_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_007.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_006.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_005.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastx_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_007.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_006.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_005.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_wait.html -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_short_result.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_short_empty.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_pcr.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_orchid.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_disco.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_actin.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mirna.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mirna.tab -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/README.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/cor6_6.db -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-pg.sql -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/pig.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/pig.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/hg38.chrom.sizes -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/ecoli.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/ecoli.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/cow.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/cow.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/bsubtilis.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/bsubtilis.fa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Affy/affy_v4_example.CEL -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Affy/affy_v3_example.CEL -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/seq.cap.ace -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/contig1.ace -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/consed_sample.ace -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/test_data -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/test.fsa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/nonascii_encoding.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/no_smpl1.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/fake.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/empty.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/A6_1-DB3.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3730.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3100.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/310.ab1 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/.coveragerc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_appendix.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_contributing.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_advanced.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_testing.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cookbook.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phenotype.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_kegg.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_graphics.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_learning.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cluster.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_motifs.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phylo.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_popgen.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_pdb.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_uniprot.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_entrez.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_searchio.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_blast.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_align.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seqio.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_quick_start.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_introduction.aux -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_uniprot.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_testing.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seqio.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_searchio.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_quick_start.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_popgen.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phylo.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phenotype.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_pdb.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_motifs.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_learning.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_kegg.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_introduction.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_graphics.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_entrez.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cookbook.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_contributing.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cluster.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_blast.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_appendix.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_align.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_advanced.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial.tex -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/www_blast.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/swissprot.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/simple.dnd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.dnd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.aln -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/nmr/simplepredict.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/nmr/noed.xpk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/my_blat.psl -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/my_blast.xml -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/m_cold.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.gz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.bgz -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.fasta -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/getgene.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/fasta_iterator.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/fasta_dictionary.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ec_5.4.2.2.txt -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/clustal_run.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/beta.faa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/alpha.faa -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/Plates.csv -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/PF05371_seed.sth -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ACT_example.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/plugins creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/plugins/linux creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/methods creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/mcoffee creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/cache creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache/matplotlib copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home/.cache/matplotlib/fontlist-v330.json -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/matplotlib creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio/Entrez creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/DBUtils.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/Loader.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/BioSeq.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/BioSeqDatabase.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeq.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/DBUtils.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/Loader.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/_utils.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/MaxEntropy.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/kNN.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/pairwise2.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/NaiveBayes.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/MarkovModel.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/LogisticRegression.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/bgzf.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/SeqFeature.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/Seq.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/SeqRecord.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/File.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2module.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/dnal.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/psw.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/dnal.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/psw.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__pycache__/GOA.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/GOA.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/Consensus.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_utils.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/CDAO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/CDAOIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NeXML.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/PhyloXML.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NexusIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/Newick.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NewickIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/BaseTree.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_io.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Consensus.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXML.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Newick.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_io.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_utils.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__pycache__/KeyWList.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/FreqTable.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__pycache__/lowess.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/lowess.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/Phd.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/Ace.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Ace.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Phd.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/lcc.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/TabIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SwissIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SffIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PirIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/QualityIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PhdIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PdbIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/NibIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/IgIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/GckIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/FastaIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/AceIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/Interfaces.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/AbiIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/GckIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/NibIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/XdnaIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/FastaIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/BlatIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/_index.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/_utils.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/hit.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/_base.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/query.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_index.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_utils.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Raf.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Dom.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Hie.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Residues.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Cla.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Des.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Cla.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Des.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Dom.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Hie.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Raf.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Residues.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/PrintFormat.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/Restriction.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/pm_fitting.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/phen_micro.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/NOEtools.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/xpktools.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/NOEtools.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/xpktools.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Nodes.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Trees.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/StandardData.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Nexus.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nexus.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nodes.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/StandardData.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Trees.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/pfm.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/minimal.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/mast.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/xms.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/clusterbuster.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/alignace.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/thresholds.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/transfac.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/meme.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/matrix.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__pycache__/db.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/alignace.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/clusterbuster.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/mast.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/matrix.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/meme.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/minimal.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/pfm.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/thresholds.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/transfac.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/xms.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PSEA.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/SCADIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PICIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ic_rebuild.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/NACCESS.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/NeighborSearch.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Dice.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/FragmentMapper.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/HSExposure.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ResidueDepth.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/DSSP.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/StructureAlignment.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Superimposer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Selection.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/mmcifio.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBList.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/MMCIFParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Residue.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Chain.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Model.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ic_data.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Polypeptide.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/vectors.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Atom.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/internal_coords.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Entity.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Structure.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/StructureBuilder.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBExceptions.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Atom.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Chain.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Dice.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Entity.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/HSExposure.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Model.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NACCESS.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBList.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PICIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PSEA.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Residue.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/SCADIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Selection.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Structure.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Superimposer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_data.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_rebuild.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/internal_coords.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmcifio.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/vectors.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__pycache__/REST.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/REST.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/Utilities.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/Trainer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/MarkovModel.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Trainer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Utilities.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/KGML_vis.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/Distribution.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/Comparative.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Comparative.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Distribution.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__pycache__/Record.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/Record.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/Record.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/Scanner.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/utils.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Record.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/utils.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__pycache__/FSSPTools.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__pycache__/fssp_rec.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Prosite.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Prodoc.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Enzyme.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/Parser.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/Parser.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/Primer3.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/Applications.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Applications.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Primer3.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/SCOPData.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/CodonTable.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/IUPACData.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/CodonTable.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/IUPACData.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/SCOPData.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/chisq.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/codonalignment.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/codonseq.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/chisq.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonseq.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.h -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/NCBIWWW.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/Applications.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/NCBIXML.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/Record.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Record.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Applications.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MsfIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MauveIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MafIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/FastaIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/NexusIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/Interfaces.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MsfIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__pycache__/AlignInfo.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.c -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__pycache__ creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Prank.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/AlignInfo.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy creating /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__pycache__/CelFile.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__pycache__/__init__.cpython-39.pyc -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/CelFile.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/File.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/LogisticRegression.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/MarkovModel.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/MaxEntropy.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NaiveBayes.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqFeature.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqRecord.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__init__.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/_utils.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/bgzf.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/kNN.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /build/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/pairwise2.py -> /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_translate.py to test_translate.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_seq.py to test_seq.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_raxml_tool.py to test_raxml_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_psw.py to test_psw.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prosite2.py to test_prosite2.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prosite1.py to test_prosite1.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs.py to test_motifs.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_lowess.py to test_lowess.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_kNN.py to test_kNN.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_geo.py to test_geo.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align.py to test_align.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Wise.py to test_Wise.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phd.py to test_Phd.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PQR.py to test_PQR.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NMR.py to test_NMR.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Medline.py to test_Medline.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_File.py to test_File.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_FSSP.py to test_FSSP.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Crystal.py to test_Crystal.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Compass.py to test_Compass.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Application.py to test_Application.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Affy.py to test_Affy.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Ace.py to test_Ace.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/run_tests.py to run_tests.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_wise.py to requires_wise.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_internet.py to requires_internet.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/getgene.py to getgene.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/Loader.py to Loader.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/dnal.py to dnal.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/psw.py to psw.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_io.py to _io.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/lowess.py to lowess.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/_index.py to _index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_index.py to _index.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Des.py to Des.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/alignace.py to alignace.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/mast.py to mast.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/matrix.py to matrix.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/meme.py to meme.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/minimal.py to minimal.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/pfm.py to pfm.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/transfac.py to transfac.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/xms.py to xms.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Atom.py to Atom.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Chain.py to Chain.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Dice.py to Dice.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Entity.py to Entity.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Model.py to Model.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Residue.py to Residue.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Selection.py to Selection.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Structure.py to Structure.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/vectors.py to vectors.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/REST.py to REST.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/Record.py to Record.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Record.py to Record.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/utils.py to utils.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Record.py to Record.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Applications.py to Applications.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/File.py to File.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Seq.py to Seq.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/_utils.py to _utils.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/bgzf.py to bgzf.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/kNN.py to kNN.cpython-39.pyc byte-compiling /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/pairwise2.py to pairwise2.cpython-39.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.78.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/build/python-biopython-1.78+dfsg' dh_install -O--buildsystem=pybuild install -d debian/python3-biopython//usr/lib/python3.9/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.9/dist-packages/Bio debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.78.egg-info debian/python3-biopython//usr/lib/python3.9/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/python3-biopython-sql//usr/lib/python3.9/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.9/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.9/dist-packages/ install -d debian/.debhelper/generated/python3-biopython-sql rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/python-biopython-1.78+dfsg' dh_installdocs -i dh_installdocs: warning: Cannot auto-detect main package for python-biopython-doc. If the default is wrong, please use --doc-main-package install -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright install -d debian/python-biopython-doc/usr/share/doc-base/ install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/biopython-tutorial install -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright find debian -name __pycache__ -type d | xargs rm -rf find debian -name example.fastq.gz debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality/example.fastq.gz # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well cp -a debian/tmp_tests/* /build/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/ find debian -name .cvsignore -delete # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \ mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \ fi cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean make[2]: Entering directory '/build/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' grep: ../Bio/__init__.py: No such file or directory File "", line 1 ; print('dev' if 'dev' in __version__ else __version__) ^ SyntaxError: invalid syntax ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux make[2]: Leaving directory '/build/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete make[1]: Leaving directory '/build/python-biopython-1.78+dfsg' dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython3-biopython-sql install -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:107: skipping package: python-biopython-doc D: dh_python3 debhelper:152: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.9/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.78.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython D: dh_python3 pydist:142: trying to find dependency for numpy (python=None) D: dh_python3 depends:275: D={'python3:any', 'python3 (>= 3.9~)', 'python3-numpy', 'python3 (<< 3.10)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package python3-biopython-sql... D: dh_python3 fs:49: moving files from debian/python3-biopython-sql/usr/lib/python3.9/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython-sql D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython install -d debian/python-biopython-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -O--buildsystem=pybuild Using 1607207560 as canonical time Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biopython-sql cd debian/python3-biopython cd debian/python-biopython-doc chmod a-x usr/share/doc/python3-biopython-sql/changelog.Debian chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/changelog.Debian cd '/build/python-biopython-1.78+dfsg' cd '/build/python-biopython-1.78+dfsg' chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex 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usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Gck.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SubsMat.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite1.py usr/share/doc/python-biopython-doc/Tests/test_prosite2.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian cd '/build/python-biopython-1.78+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/python-biopython-1.78+dfsg' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/build/python-biopython-1.78+dfsg' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/57e250e22b773074ed675848ddd6f681efe9bc.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/57e250e22b773074ed675848ddd6f681efe9bc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/57e250e22b773074ed675848ddd6f681efe9bc.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bc/b2d15f01c067a31d42a5969c8888196f80793e.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bc/b2d15f01c067a31d42a5969c8888196f80793e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/bc/b2d15f01c067a31d42a5969c8888196f80793e.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1b/554092da0ae864dd23b573f8e1d1b011740536.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1b/554092da0ae864dd23b573f8e1d1b011740536.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/1b/554092da0ae864dd23b573f8e1d1b011740536.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5c objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5c/8c1bc8fc51ea4171dfa8c9a3a00e6492f98183.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5c/8c1bc8fc51ea4171dfa8c9a3a00e6492f98183.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5c/8c1bc8fc51ea4171dfa8c9a3a00e6492f98183.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6/fade2280025a40ccd3fe9cefe06c8cdc8eae00.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6/fade2280025a40ccd3fe9cefe06c8cdc8eae00.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c6/fade2280025a40ccd3fe9cefe06c8cdc8eae00.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e8/5efa708ce9bef021a2da3f0ebfbbd53caf26f0.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e8/5efa708ce9bef021a2da3f0ebfbbd53caf26f0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e8/5efa708ce9bef021a2da3f0ebfbbd53caf26f0.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/57/a1df8ab55107606e91aac4210a697de400544b.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/57/a1df8ab55107606e91aac4210a697de400544b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/57/a1df8ab55107606e91aac4210a697de400544b.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm install -d debian/python-biopython-doc/DEBIAN install -d debian/python3-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -Pdebian/python3-biopython-sql echo misc:Depends= >> debian/python-biopython-doc.substvars echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -Pdebian/python-biopython-doc echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=1b554092da0ae864dd23b573f8e1d1b011740536 4e57e250e22b773074ed675848ddd6f681efe9bc 57a1df8ab55107606e91aac4210a697de400544b 5c8c1bc8fc51ea4171dfa8c9a3a00e6492f98183 bcb2d15f01c067a31d42a5969c8888196f80793e c6fade2280025a40ccd3fe9cefe06c8cdc8eae00 e85efa708ce9bef021a2da3f0ebfbbd53caf26f0" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython chmod 0644 -- debian/python-biopython-doc/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. dpkg-deb --root-owner-group --build debian/python-biopython-doc .. dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.78+dfsg-4_all.deb'. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.78+dfsg-4_amd64.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-biopython-sql .. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.78+dfsg-4_all.deb'. dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.78+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-biopython_1.78+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4035769 and its subdirectories I: Current time: Sat Oct 16 04:50:40 -12 2021 I: pbuilder-time-stamp: 1634403040 Sat Oct 16 16:50:41 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sat Oct 16 16:50:41 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sat Oct 16 17:18:32 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sat Oct 16 17:18:32 UTC 2021 I: python-biopython_1.78+dfsg-4_amd64.changes: Format: 1.8 Date: Sat, 05 Dec 2020 23:32:40 +0100 Source: python-biopython Binary: python-biopython-doc python3-biopython python3-biopython-dbgsym python3-biopython-sql Architecture: all amd64 Version: 1.78+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python-biopython-doc - Documentation for the Biopython library python3-biopython - Python3 library for bioinformatics python3-biopython-sql - Biopython support for the BioSQL database schema (Python 3) Closes: 976542 Changes: python-biopython (1.78+dfsg-4) unstable; urgency=medium . * Add mkdssp4.patch. (Closes: #976542) * Standards-Version: 4.5.1 (routine-update) * Bump dependency on dssp version 4.0.0. Checksums-Sha1: 44272471146d6086c1ef129069c59e4228d4f630 14951972 python-biopython-doc_1.78+dfsg-4_all.deb d2069a842979f22fef828d741948d4cdb21c431b 12699 python-biopython_1.78+dfsg-4_amd64.buildinfo a99a89c5a43986321f00741189e67d5e420131b0 262280 python3-biopython-dbgsym_1.78+dfsg-4_amd64.deb a3dbbfef0d0e618d783502c367ec2cc295407787 32980 python3-biopython-sql_1.78+dfsg-4_all.deb c27052980f1f8cc5a813e23e6f22f990ddb32702 1401964 python3-biopython_1.78+dfsg-4_amd64.deb Checksums-Sha256: c5dfc05a133842e792a270db3d6b5a0e07c64dd213000d84325061a4b1245b01 14951972 python-biopython-doc_1.78+dfsg-4_all.deb f1931d05baa4f93630396176f50301a46a20e95283cd7036915d9a06410c370f 12699 python-biopython_1.78+dfsg-4_amd64.buildinfo 6b5d8249ac43e73c58605753fdaf251cd0598c853fb9c06ebbcfc3f5124b4ba7 262280 python3-biopython-dbgsym_1.78+dfsg-4_amd64.deb dce2f7cb16c8dcd953245b81085edb8a58543a0e92a5839dac29a07532076a4b 32980 python3-biopython-sql_1.78+dfsg-4_all.deb 60b95dfca5ff2113f12c9e9075bb9472ebfab7a54462d736b1010b28382e6331 1401964 python3-biopython_1.78+dfsg-4_amd64.deb Files: 9d2c50e57e172cf0c42096c1148bac18 14951972 doc optional python-biopython-doc_1.78+dfsg-4_all.deb 2f5c5c17c82df096c514281cb4d76b43 12699 python optional python-biopython_1.78+dfsg-4_amd64.buildinfo 3e9f484002017498df8d2c95966eeb0a 262280 debug optional python3-biopython-dbgsym_1.78+dfsg-4_amd64.deb 80747218e6d6cf7ce68387aa4b9c5c47 32980 python optional python3-biopython-sql_1.78+dfsg-4_all.deb d9bf809fab2c54622617d4b8a96757f9 1401964 python optional python3-biopython_1.78+dfsg-4_amd64.deb Sat Oct 16 17:18:35 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.tX8h6D4lnG/python-biopython_1.78+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.tX8h6D4lnG/python-biopython_1.78+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.tX8h6D4lnG/python-biopython_1.78+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.tX8h6D4lnG/b1/python-biopython_1.78+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.tX8h6D4lnG/b2/python-biopython_1.78+dfsg-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 3.591s) 3.591s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.123s) 1.122s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Oct 16 17:22:41 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Sat Oct 16 17:22:41 UTC 2021 I: python-biopython from bullseye built successfully and reproducibly on amd64. Sat Oct 16 17:22:52 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Oct 16 17:22:52 UTC 2021 I: Submitting 16K b1/python-biopython_1.78+dfsg-4_amd64.buildinfo.asc Sat Oct 16 17:23:05 UTC 2021 I: Submitting 16K b2/python-biopython_1.78+dfsg-4_amd64.buildinfo.asc Sat Oct 16 17:23:17 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Oct 16 17:23:17 UTC 2021 I: Done submitting .buildinfo files. Sat Oct 16 17:23:17 UTC 2021 I: Removing signed python-biopython_1.78+dfsg-4_amd64.buildinfo.asc files: removed './b1/python-biopython_1.78+dfsg-4_amd64.buildinfo.asc' removed './b2/python-biopython_1.78+dfsg-4_amd64.buildinfo.asc'