Wed Nov 10 18:06:19 UTC 2021 I: starting to build python-csb/bullseye/amd64 on jenkins on '2021-11-10 18:06' Wed Nov 10 18:06:19 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_16/88591/console.log Wed Nov 10 18:06:19 UTC 2021 I: Downloading source for bullseye/python-csb=1.2.5+dfsg-5 --2021-11-10 18:06:19-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-csb/python-csb_1.2.5%2bdfsg-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2250 (2.2K) Saving to: ‘python-csb_1.2.5+dfsg-5.dsc’ 0K .. 100% 111M=0s 2021-11-10 18:06:19 (111 MB/s) - ‘python-csb_1.2.5+dfsg-5.dsc’ saved [2250/2250] Wed Nov 10 18:06:19 UTC 2021 I: python-csb_1.2.5+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-csb Binary: python3-csb, csb Architecture: all Version: 1.2.5+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Tomas Di Domenico , Andreas Tille Homepage: https://github.com/csb-toolbox/CSB Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/python-csb Vcs-Git: https://salsa.debian.org/med-team/python-csb.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools Package-List: csb deb science optional arch=all python3-csb deb python optional arch=all Checksums-Sha1: bc4b0b5a5f2c4522bb1654d63aad73c62bf563e1 2999651 python-csb_1.2.5+dfsg.orig.tar.gz 36dd4885b9be3eb350abcfca3222bc746b31cd93 9788 python-csb_1.2.5+dfsg-5.debian.tar.xz Checksums-Sha256: fb412c6e1b5ad136dc3527eb6ac77cb703fb5b18b47173fb637683de6ebe0941 2999651 python-csb_1.2.5+dfsg.orig.tar.gz 9b5b1977d36a8c1e2fcb7d9b49e89bcf271e05a9620b13318836f8b13da143c6 9788 python-csb_1.2.5+dfsg-5.debian.tar.xz Files: 83c9fb8f55cea112073690299c568f08 2999651 python-csb_1.2.5+dfsg.orig.tar.gz 5399ee0b4541c171ad400f0d4462d327 9788 python-csb_1.2.5+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl2V5HgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFadw//aa9Pb7blcfyIyZkD+othlCzZfpiRQj/1 I4u92hevOD0sllkP9dEiu7fTZsWJaMw9s2T74YHaU/rbYQELAdSSUZdUdTXxI4f4 dbqRnKARQhuL88HRjEmaTbdcgqLdoIvCkaQ7VsFr4NYI0yVKg1jjfiFLAZg6MZIP Hs1hXr6aq/4DgJXzBJ968lgx0tznzyTUmys0K8gRii39n53m86uRhtZ2bSEBZImu 3ZQdzT9M/0EIywUxluePVlw8lidnymS2ZanHMoV8TJR2yGdg/4O6dH76wFd44dKQ +PPxMEpjdcj4CQW4SKOna9QotG0aLIhC331ifnAp2BA4eQis6s5GIkCzq9cPI48r ObgYCHemrzMrr4Q5CsUjOoeWLU0EANXbAjBXGzsj9UYrWIWJHToYYXt4suuHph5W 7s5Yrfu/T284xHaMkryYDnZwMN7Hx4A5z3dzoY7yaAbOK9UW0r8kJdQusMmT87jU Blay0XXg91aNlvSmFLl9DGsCCml5txo6rZlOTsyWvj9YDmgHuNPaU6bRK91D7lln F5mY8Vlx5PqRECJZg6KZEUCKj+ayneB513NEwYvYw9fsxDNuBJv2DxjIwxqcg002 UfOPl01F8gz6NTbDNZ+2VibWvSGgSszqIUczAJYE26PHQPGyvezX2871KG/BivAA zHTSK3C0KcM= =4OaU -----END PGP SIGNATURE----- Wed Nov 10 18:06:19 UTC 2021 I: Checking whether the package is not for us Wed Nov 10 18:06:19 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed Nov 10 18:06:19 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed Nov 10 18:10:53 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 13 12:29:22 -12 2022 I: pbuilder-time-stamp: 1670977762 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-csb_1.2.5+dfsg-5.dsc] I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz] I: copying [./python-csb_1.2.5+dfsg-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.UAMi9KBO/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 3 00:07:20 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-csb_1.2.5+dfsg-5.dsc dpkg-source: info: extracting python-csb in python-csb-1.2.5+dfsg dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz dpkg-source: info: unpacking python-csb_1.2.5+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_online_tests.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying fix_setup.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/173357/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fe8f0f460ea34b748dbec47d0c1c9e79' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='173357' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.C6Hetc8SHq/pbuilderrc_yHiE --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.C6Hetc8SHq/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 23 06:05 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/173357/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} ttf-bitstream-vera{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-olefile python3-tk wget 0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 55.2 MB of archives. After unpacking 203 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1 [289 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1 [87.7 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1 [97.6 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 76 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get: 78 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3 [445 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 55.2 MB in 1s (89.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20522 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. 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Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20967 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../06-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. 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Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../21-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_amd64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... 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Preparing to unpack .../32-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../33-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../34-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../35-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../36-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../37-libfreetype6_2.10.4+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../38-libgfortran5_10.2.1-6_amd64.deb ... Unpacking libgfortran5:amd64 (10.2.1-6) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../39-libimagequant0_2.12.2-1.1_amd64.deb ... Unpacking libimagequant0:amd64 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../40-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../41-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../42-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../43-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../44-liblapack3_3.9.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../45-liblbfgsb0_3.0+dfsg.3-9_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../46-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../47-libwebp6_0.6.1-2.1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../48-libtiff5_4.2.0-1_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../49-libwebpdemux2_0.6.1-2.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../50-libwebpmux3_0.6.1-2.1_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../51-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../52-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../53-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../54-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../55-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../56-python3-all_3.9.2-3_amd64.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3-six. Preparing to unpack .../57-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../58-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../59-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../60-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../61-python3-kiwisolver_1.3.1-1+b1_amd64.deb ... Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../62-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../63-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../64-python3-numpy_1%3a1.19.5-1_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../65-python3-pil_8.1.2+dfsg-0.3_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2+dfsg-0.3) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../66-python3-matplotlib_3.3.4-1_amd64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../67-python3-scipy_1.6.0-2_amd64.deb ... 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Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:amd64 (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-5_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean /build/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /build/python-csb-1.2.5+dfsg/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? if ex.code is 0: /build/python-csb-1.2.5+dfsg/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? if ex.code is not 0: /build/python-csb-1.2.5+dfsg/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? if Shell.run([sc, 'help']).code is 0: Warning: 'classifiers' should be a list, got type 'tuple' running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt writing manifest file 'csb.egg-info/SOURCES.txt' reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ cd {build_dir}; \ PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2' I: pybuild base:232: set -e; \ cd /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build; \ PYTHONPATH=/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build PYTHONWARNINGS=d python3.9 csb/test/app.py --generated-resources /tmp --verbosity 2 /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:162: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py:210: DeprecationWarning: invalid escape sequence \d m = re.search('(\d+)\D+(\d+)', line).groups() /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py:260: DeprecationWarning: invalid escape sequence \s seq = re.sub('\s+', '', ''.join(lines[1:])) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py:307: DeprecationWarning: invalid escape sequence \- pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py:2129: DeprecationWarning: invalid escape sequence \s string = ''.join(re.split('\s+', string)) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py:2131: DeprecationWarning: invalid escape sequence \s conf_string = ''.join(re.split('\s+', conf_string)) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py:566: DeprecationWarning: invalid escape sequence \w self._residues += re.sub('([^\w\-\.])+', '', string) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:1222: DeprecationWarning: invalid escape sequence \d res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'> Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py:341: DeprecationWarning: invalid escape sequence \s """ /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence \s input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence \d residues = re.compile('(\d+)\s*residues\s\|') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:33: DeprecationWarning: invalid escape sequence \s ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:34: DeprecationWarning: invalid escape sequence \s '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:35: DeprecationWarning: invalid escape sequence \s '%\s*gener\s*(\d+\.\d+)%\s*disall') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:36: DeprecationWarning: invalid escape sequence \s labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:37: DeprecationWarning: invalid escape sequence \s labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:38: DeprecationWarning: invalid escape sequence \s bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:39: DeprecationWarning: invalid escape sequence \s g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence \s '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence \s re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence \s re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence \s re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence \s re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? self.assertFalse(self.enum.C is 66) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testOverlap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSDTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testCount (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testMean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrink (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrinkOne (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testFomObject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeip0w59k' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMarkUnconfident (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSources (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testStartingAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMakeChopped (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeCombined (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFiltered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFragset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromProfile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testClosest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testLongest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testNative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testPrecision (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testCompute (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testComputeSingle (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testFlatTorsionMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) Test creating an empty L{Clans} instance. ... ok testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> data_blocks = open(os.path.expanduser( ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) Test parsing of a small dummy file with known values ... ok testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) Test whether the premature (before parsing) access to clans_instance is ... ok testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvn0g4850' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1yj03_h4' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2r3zm4vd' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpc3w7xjth' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3e34_4rz' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpck1p323_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testStrict (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpony6n9es' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7jid6ar6' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) @see: [CSB 0000056] ... ok testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptb3wp5qf' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) @see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphspesg5s' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) @see: [CSB 0000067] ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) Strictly speaking, this is a regression test. But it so essential that ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) Strictly speaking, this is a regression test. But it so essential that ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseBiomolecule (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseHetMolecules (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testHetMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) @see: [CSB 0000031] ... ok testNonStandardResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) @see: [CSB 0000052] ... ok testCombinedMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFastMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMapper (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testRobustMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) @see: [CSB 0000045] ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testGetAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testNegative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testPositive (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testAtomContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCompare (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCutoff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testPosition (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testResidueContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testGetAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testMatch (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testLen (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMaxIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMinIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp83qdat5t' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7two6bb6' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0pkm2s0d' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5bmnmlvk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy6jtvi7i' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpri5en7d0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7g6sz2q8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9xfxnv1t' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000122] ... ok testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000030] ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) @see: [CSB 0000029] ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) @todo: more checks are needed here (e.g. append an atom to different residues) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) @bug: check for overlapping SNs in a Chain ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprmdm61_5' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6jgu7g5t' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) @see: [CSB 0000058] ... ok testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. self.assertNotEquals(id(obj), id(copy)) ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestIterable) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestOrderedDict) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpn6atu171' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7ugvntrb' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2nu8t6ou' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe6nkhb9q' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8cvba4m7' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6f77cie0' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.MathRegressions) r526 ... ok testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testInvGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testParameterValidation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions) @see: [CSB 0000132] ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testConstrucor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testFindBaseParameter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testAssignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testParameterChaining (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testProperties (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testAcceptSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testAcceptProposal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testAcceptanceRate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testEnergy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testLastMoveAccepted (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testSample (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testTemperature (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testUpdateStatistics (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testCalcPacc (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testPropose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not positive-semidefinite. initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not positive-semidefinite. momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), ok testHMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCPropagatorMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testNCMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCStepRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testMDRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testReplicaExchangeMC (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testThermostattedMDRensMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testProposeWithMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testProposeWithoutMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testHMCPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testNonequilibriumStepPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testPlainMDPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonianPerturbation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testStep (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testCalcPaccSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testProposeSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testFiveReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py:866: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1 ok testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok ---------------------------------------------------------------------- Ran 697 tests in 219.780s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-csb-1.2.5+dfsg/debian/python3-csb Warning: 'classifiers' should be a list, got type 'tuple' running install running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' running install_lib creating /build/python-csb-1.2.5+dfsg/debian/python3-csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9 creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfit.py to bfit.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfite.py to bfite.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/helloworld.py to helloworld.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/precision.py to precision.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/promix.py to promix.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/dssp.py to dssp.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/noe.py to noe.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/vasco.py to vasco.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/whatif.py to whatif.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/integrators.py to integrators.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/rand.py to rand.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/wham.py to wham.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc /usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/app.py to app.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/build.py to build.cpython-39.pyc /usr/lib/python3.9/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? running install_egg_info Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' dh_install mkdir -p debian/csb/usr mv debian/python3-csb/usr/bin debian/csb/usr make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-5_all.deb'. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-5_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-csb_1.2.5+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/173357 and its subdirectories I: Current time: Tue Dec 13 12:33:54 -12 2022 I: pbuilder-time-stamp: 1670978034 Wed Nov 10 18:10:54 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Wed Nov 10 18:10:54 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Wed Nov 10 18:15:29 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Wed Nov 10 18:15:29 UTC 2021 I: python-csb_1.2.5+dfsg-5_amd64.changes: Format: 1.8 Date: Thu, 03 Oct 2019 14:01:27 +0200 Source: python-csb Binary: csb python3-csb Architecture: all Version: 1.2.5+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: csb - Computational Structural Biology Toolbox (CSB) python3-csb - Python framework for structural bioinformatics (Python3 version) Closes: 941643 Changes: python-csb (1.2.5+dfsg-5) unstable; urgency=medium . [ Matthias Klose ] * Stop running Python2 autopkg tests. Closes: #941643 . [ Andreas Tille ] * Set upstream metadata fields: Repository. Checksums-Sha1: 97b9bd543751dcab22286b22d769f902478a47d0 13128 csb_1.2.5+dfsg-5_all.deb b21e195974998560f35fe6658cca013c4e211989 6724 python-csb_1.2.5+dfsg-5_amd64.buildinfo 3fc1d9e6566c925e09213387f96d4859030aacff 2175168 python3-csb_1.2.5+dfsg-5_all.deb Checksums-Sha256: 2ea10cc01914e6e00e854c1ca3a1b29db0aefc825bb3040d2625bffd3939bc20 13128 csb_1.2.5+dfsg-5_all.deb 7a78e7fb737776d9ebca04bec50ddbc54e8fa330c8d2dd395da1eb51f300503b 6724 python-csb_1.2.5+dfsg-5_amd64.buildinfo 6fd5bdee304b6c588beeefa3f62fb5317671d9720d89089174a6267ed22c6e4e 2175168 python3-csb_1.2.5+dfsg-5_all.deb Files: b65d7b013a45d8c7a40a67d5b08b4860 13128 science optional csb_1.2.5+dfsg-5_all.deb 1b49ec3f4643b23b4f84fcf58b3f06b4 6724 science optional python-csb_1.2.5+dfsg-5_amd64.buildinfo 9d0190a1f4f49e749e540d0a84aaf4ec 2175168 python optional python3-csb_1.2.5+dfsg-5_all.deb Wed Nov 10 18:15:31 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.C6Hetc8SHq/python-csb_1.2.5+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.C6Hetc8SHq/python-csb_1.2.5+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.C6Hetc8SHq/python-csb_1.2.5+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.C6Hetc8SHq/b1/python-csb_1.2.5+dfsg-5_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.C6Hetc8SHq/b2/python-csb_1.2.5+dfsg-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.378s) 0.378s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.050s) 0.050s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Nov 10 18:15:32 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Wed Nov 10 18:15:32 UTC 2021 I: python-csb from bullseye built successfully and reproducibly on amd64. Wed Nov 10 18:15:34 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Nov 10 18:15:34 UTC 2021 I: Submitting 8.0K b1/python-csb_1.2.5+dfsg-5_amd64.buildinfo.asc Wed Nov 10 18:15:36 UTC 2021 I: Submitting 8.0K b2/python-csb_1.2.5+dfsg-5_amd64.buildinfo.asc Wed Nov 10 18:15:39 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Nov 10 18:15:39 UTC 2021 I: Done submitting .buildinfo files. Wed Nov 10 18:15:39 UTC 2021 I: Removing signed python-csb_1.2.5+dfsg-5_amd64.buildinfo.asc files: removed './b1/python-csb_1.2.5+dfsg-5_amd64.buildinfo.asc' removed './b2/python-csb_1.2.5+dfsg-5_amd64.buildinfo.asc'