Mon Nov 22 03:16:30 UTC 2021 I: starting to build sepp/bullseye/amd64 on jenkins on '2021-11-22 03:16' Mon Nov 22 03:16:30 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_16/89946/console.log Mon Nov 22 03:16:30 UTC 2021 I: Downloading source for bullseye/sepp=4.3.10+dfsg-5 --2021-11-22 03:16:30-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/sepp/sepp_4.3.10%2bdfsg-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2139 (2.1K) Saving to: ‘sepp_4.3.10+dfsg-5.dsc’ 0K .. 100% 53.3M=0s 2021-11-22 03:16:30 (53.3 MB/s) - ‘sepp_4.3.10+dfsg-5.dsc’ saved [2139/2139] Mon Nov 22 03:16:30 UTC 2021 I: sepp_4.3.10+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sepp Binary: sepp Architecture: any Version: 4.3.10+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Pierre Gruet Homepage: https://github.com/smirarab/sepp/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/sepp Vcs-Git: https://salsa.debian.org/med-team/sepp.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-dendropy, ant, libjenkins-json-java, libgoogle-gson-java, ncbi-blast+ , pplacer , hmmer Package-List: sepp deb science optional arch=any Checksums-Sha1: baf7d2cc04acac0a1869b6dca1e9d4fb995beb49 4287844 sepp_4.3.10+dfsg.orig.tar.xz ad81e2739c1a4dea90c4ded819f6450c558917ac 14544 sepp_4.3.10+dfsg-5.debian.tar.xz Checksums-Sha256: d0840407c5387b7d4db0baf701c220580ecc0fcc88f91ef1f6295a9da0869c7e 4287844 sepp_4.3.10+dfsg.orig.tar.xz ba5b33d1c59b7c8d11f786172f2cacb92e267933f3876d9137eb68b52398f777 14544 sepp_4.3.10+dfsg-5.debian.tar.xz Files: 46f9be63a75122114424d6b09eb5ba1f 4287844 sepp_4.3.10+dfsg.orig.tar.xz 60129f8c39854ec2785e9aac6effc128 14544 sepp_4.3.10+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAl/ksTAACgkQYAMWptwn dHblXRAAq0Sx9sn0iScDmfE3H3hMLy0zeQEchrglXTS0TcFY5R/+idwyfilxRJ4M xWPesxUig1R1Mpd8dSQEPrmyyEFfPuOj0EBJkXXB3DUW8WUnJRSiscrXtc/L/zOK VZuVUH9Ozwy+OKoF7mZ7oyPJhvtoom7ywGi4Evwrq0jdgvtXoc+lGeSsg4cSwjBR BDritNurGRp25v6Mq0O5oSfed6wPs9UZENPKl8g/9N4FbsWezz4wKkDNzn/SrMmE 2eHVaTu953gb1jrtik2T48y1jkEU7OcfmsNshJVyxOcMKSdknZfKkgV7i58Vw3MS fWsK0vM1FjiQGdmE9/jqynAjSUXHeUlbmuhOdLuqkSw0Mh4RAstOxqoyf6/uy9LP iC58bwCmf6e+3/WxzMyusY1r2BoXbocEfE4qL/YsX+pF6XI/doVIZ6AKLFi5+r6M NTwvVMs/IvUCBPMb5SNDVVyl+Ywxh2QuX2fAnIhQuxmrtDBzmEglaYCkObeLBlib uYGsI2TT+q6IWmFtTZGFy/jxxfZMP2E8AACZFrunQVl1Gfr689unDYwDKAUyyYDl ZbhreLYmKUYa/Ndv2bMWVmBWk9NnL/6GwFWgU6gBt1dkcipbtGv+Crpy9w0/KKBa 0G6OXtNR3Wxt82qSP471ejq+lw4DbXHiiCFbFW0vihCUyrHC/WY= =NBk/ -----END PGP SIGNATURE----- Mon Nov 22 03:16:30 UTC 2021 I: Checking whether the package is not for us Mon Nov 22 03:16:30 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Nov 22 03:16:30 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Nov 22 03:19:08 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Dec 24 21:39:33 -12 2022 I: pbuilder-time-stamp: 1671961173 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sepp_4.3.10+dfsg-5.dsc] I: copying [./sepp_4.3.10+dfsg.orig.tar.xz] I: copying [./sepp_4.3.10+dfsg-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.mVQNFGG0/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 24 03:18:08 2020 -12 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./sepp_4.3.10+dfsg-5.dsc dpkg-source: info: extracting sepp in sepp-4.3.10+dfsg dpkg-source: info: unpacking sepp_4.3.10+dfsg.orig.tar.xz dpkg-source: info: unpacking sepp_4.3.10+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying setup.patch dpkg-source: info: applying use_debian_packaged_guppy_from_pplacer.patch dpkg-source: info: applying change_java_version_for_ant.patch dpkg-source: info: applying json_collections.patch dpkg-source: info: applying java_build.patch dpkg-source: info: applying configuration_files_in_etc_and_per_user.patch dpkg-source: info: applying looking_for_integer_in_placements.patch dpkg-source: info: applying deactivating_log_test.patch dpkg-source: info: applying make_split_sequences_script.patch dpkg-source: info: applying using_python3_interpreter.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1370554/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='3f4e084487fe44099573b2ef1662d192' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1370554' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.5zO9UsImA7/pbuilderrc_8bsD --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.5zO9UsImA7/b1 --logfile b1/build.log sepp_4.3.10+dfsg-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 24 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/1370554/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-dendropy, ant, libjenkins-json-java, libgoogle-gson-java, ncbi-blast+, pplacer, hmmer dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-dendropy; however: Package python3-dendropy is not installed. pbuilder-satisfydepends-dummy depends on ant; however: Package ant is not installed. pbuilder-satisfydepends-dummy depends on libjenkins-json-java; however: Package libjenkins-json-java is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-gson-java; however: Package libgoogle-gson-java is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on pplacer; however: Package pplacer is not installed. pbuilder-satisfydepends-dummy depends on hmmer; however: Package hmmer is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} hmmer{a} intltool-debian{a} java-common{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcommons-beanutils-java{a} libcommons-collections3-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libezmorph-java{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libglib2.0-0{a} libgoogle-gson-java{a} libgraphite2-3{a} libgsl25{a} libgslcblas0{a} libharfbuzz0b{a} libicu67{a} libjenkins-json-java{a} libjpeg62-turbo{a} liblcms2-2{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmpdec3{a} libnspr4{a} libnss3{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} pplacer{a} python3{a} python3-dendropy{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ant-optional curl dbus groovy junit libarchive-cpio-perl libglib2.0-data liblog4j1.2-java libltdl-dev libmail-sendmail-perl liboro-java libxom-java lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 96.1 MB of archives. After unpacking 399 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1k-1+deb11u1 [851 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1 [1304 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909 [15.7 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.20-2 [219 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u1 [350 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.12+7-2 [37.3 MB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 ant all 1.10.9-4 [2118 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libcommons-beanutils-java all 1.9.4-1 [232 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang-java all 2.6-9 [273 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libezmorph-java all 1.0.6-4 [75.9 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libgoogle-gson-java all 2.8.6-1 [225 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libjenkins-json-java all 2.4-jenkins-3-6 [138 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 pplacer amd64 1.1~alpha19-4 [2933 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 python3-dendropy all 4.5.1-1 [273 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 96.1 MB in 2s (61.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20522 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20943 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_1.1.1k-1+deb11u1_amd64.deb ... Unpacking openssl (1.1.1k-1+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../05-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../08-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../09-libnspr4_2%3a4.29-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.29-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../10-libnss3_2%3a3.61-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.61-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../11-ca-certificates-java_20190909_all.deb ... Unpacking ca-certificates-java (20190909) ... Selecting previously unselected package java-common. Preparing to unpack .../12-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../13-libavahi-common-data_0.8-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../14-libavahi-common3_0.8-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../15-libdbus-1-3_1.12.20-2_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-2) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../16-libavahi-client3_0.8-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-5) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../17-libcups2_2.3.3op2-3+deb11u1_amd64.deb ... Unpacking libcups2:amd64 (2.3.3op2-3+deb11u1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../18-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../19-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../21-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../22-libfreetype6_2.10.4+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../23-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../24-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../25-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../26-libasound2-data_1.2.4-1.1_all.deb ... Unpacking libasound2-data (1.2.4-1.1) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../27-libasound2_1.2.4-1.1_amd64.deb ... Unpacking libasound2:amd64 (1.2.4-1.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../28-libglib2.0-0_2.66.8-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.66.8-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../29-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../30-libharfbuzz0b_2.7.4-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.7.4-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../31-libpcsclite1_1.9.1-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.9.1-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../32-openjdk-11-jre-headless_11.0.12+7-2_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.12+7-2) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../33-default-jre-headless_2%3a1.11-72_amd64.deb ... Unpacking default-jre-headless (2:1.11-72) ... Selecting previously unselected package ant. Preparing to unpack .../34-ant_1.10.9-4_all.deb ... Unpacking ant (1.10.9-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../35-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../36-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../37-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../38-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../39-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../40-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../41-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../42-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../43-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... 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Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-dendropy (4.5.1-1) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up default-jre-headless (2:1.11-72) ... Setting up ant (1.10.9-4) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-11-jre-headless:amd64 (11.0.12+7-2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/sepp-4.3.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sepp_4.3.10+dfsg-5_source.changes dpkg-buildpackage: info: source package sepp dpkg-buildpackage: info: source version 4.3.10+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/sepp-4.3.10+dfsg' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f -rf tools/bundled rm -f -rf tools/merge/build rm -f sepp.config tipp.config upp.config find . -name "*.class" -delete find . -name "*.jar" -delete rm -f home.path sepp.egg-info/PKG-INFO sepp.egg-info/SOURCES.txt sepp.egg-info/dependency_links.txt sepp.egg-info/requires.txt sepp.egg-info/top_level.txt make[1]: Leaving directory '/build/sepp-4.3.10+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/sepp-4.3.10+dfsg' mkdir -p tools/bundled/Linux mkdir -p tools/merge/lib # Building the jars for sepp first, tipp then. cd tools/merge && \ CLASSPATH=/usr/share/java/jenkins-json-lib.jar:/usr/share/java/gson.jar ant && \ CLASSPATH=/usr/share/java/jenkins-json-lib.jar:/usr/share/java/gson.jar ant -f tipp.xml Buildfile: /build/sepp-4.3.10+dfsg/tools/merge/build.xml clean: compile: [mkdir] Created dir: /build/sepp-4.3.10+dfsg/tools/merge/classes [javac] /build/sepp-4.3.10+dfsg/tools/merge/build.xml:32: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 23 source files to /build/sepp-4.3.10+dfsg/tools/merge/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] /build/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/structs/tree/util/Trees.java:32: warning: SunGraphicsEnvironment is internal proprietary API and may be removed in a future release [javac] import sun.java2d.SunGraphicsEnvironment; [javac] ^ [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 2 warnings jar: [jar] Building jar: /build/sepp-4.3.10+dfsg/tools/merge/seppJsonMerger.jar BUILD SUCCESSFUL Total time: 6 seconds Buildfile: /build/sepp-4.3.10+dfsg/tools/merge/tipp.xml clean: compile: [javac] /build/sepp-4.3.10+dfsg/tools/merge/tipp.xml:32: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds jar: [jar] Building jar: /build/sepp-4.3.10+dfsg/tools/merge/tippJsonMerger.jar BUILD SUCCESSFUL Total time: 2 seconds # dh_auto_configure only calls the config for sepp, we need it for tipp and # upp as well. pybuild --configure --configure-args "tipp upp" I: pybuild base:232: python3.9 setup.py config tipp upp running config Creating main sepp config file at /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/.sepp/main.config and tools at /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/.sepp running tipp Creating main TIPP config file at /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/.sepp/tipp.config and tools at /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/.sepp Warning! REFERENCE variable is not defined. If you plan to run TIPP for abundance profiling, then have REFERENCE pointed to Reference directory. You can also change your config to point to the Reference directory by including the following line in your config: [reference] path=/location/of/reference_directory/ running upp Creating main UPP config file at /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/.sepp/upp.config and tools at /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/.sepp make[1]: Leaving directory '/build/sepp-4.3.10+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/sepp-4.3.10+dfsg' dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/exhaustive_upp.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/exhaustive_tipp.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/ensemble.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/config.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/tree.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/scratch.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/scheduler.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/problem.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/metagenomics.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/math_utils.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/jobs.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/filemgr.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/exhaustive.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/decompose_tree.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/checkpointing.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/alignment.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/algorithm.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp copying sepp/__init__.py -> /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp running build_scripts creating build creating build/scripts-3.9 copying and adjusting run_sepp.py -> build/scripts-3.9 copying and adjusting run_tipp.py -> build/scripts-3.9 copying and adjusting run_upp.py -> build/scripts-3.9 copying and adjusting run_abundance.py -> build/scripts-3.9 copying and adjusting split_sequences.py -> build/scripts-3.9 copying and adjusting run_tipp_tool.py -> build/scripts-3.9 changing mode of build/scripts-3.9/run_sepp.py from 644 to 755 changing mode of build/scripts-3.9/run_tipp.py from 644 to 755 changing mode of build/scripts-3.9/run_upp.py from 644 to 755 changing mode of build/scripts-3.9/run_abundance.py from 644 to 755 changing mode of build/scripts-3.9/split_sequences.py from 644 to 755 changing mode of build/scripts-3.9/run_tipp_tool.py from 644 to 755 # Preparing a conffile with Debian paths for sepp. sed 's,path=.*\(pplacer\)$,path=/usr/bin/\1,' `find . -name main.config` | \ sed 's,path=.*\(hmm[a-z]*\)$,path=/usr/bin/\1,' | \ sed 's,path=.*\(seppJsonMerger.jar\)$,path=/usr/share/sepp/\1,' > sepp.config # Preparing a conffile with Debian paths for tipp. sed 's,path=.*\(pplacer\)$,path=/usr/bin/\1,' `find . -name tipp.config` | \ sed 's,path=.*\(hmm[a-z]*\)$,path=/usr/bin/\1,' | \ sed 's,path=.*\(tippJsonMerger.jar\)$,path=/usr/share/sepp/\1,' > tipp.config # Preparing a conffile with Debian paths for upp. sed 's,path=.*\(pplacer\)$,path=/usr/bin/\1,' `find . -name upp.config` | \ sed 's,path=.*\(hmm[a-z]*\)$,path=/usr/bin/\1,' | \ sed 's,path=.*\(seppJsonMerger.jar\)$,path=/usr/share/sepp/\1,' > upp.config make[1]: Leaving directory '/build/sepp-4.3.10+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/sepp-4.3.10+dfsg' ORIGIN_FOLDER=`pwd` && \ TEST_FOLDER=`mktemp -d` && \ cp -r test/ $TEST_FOLDER && \ cd $TEST_FOLDER && \ mkdir sepp/ && \ for F in $(ls $ORIGIN_FOLDER/sepp/*.py); do \ sed "s,/etc/sepp,$TEST_FOLDER," $F > sepp/${F##*/}; \ done && \ for F in $(ls $ORIGIN_FOLDER/*.config); do \ sed "s,/usr/share/sepp,$ORIGIN_FOLDER/tools/merge," $F > ${F##*/}; \ done && \ cd test/unittest/ && \ sed "s,\".*\.jar\",\"$ORIGIN_FOLDER/tools/merge/seppJsonMerger.jar\"," testMerge.py > testMergeCp.py && \ mv testMergeCp.py testMerge.py && \ PYTHONPATH=$PYTHONPATH:../../ python3 -m unittest discover -v testAlignmentReadFasta (testAlignment.Test) ... /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:293: DeprecationWarning: 'U' mode is deprecated file_obj = open(filename, 'rU') /tmp/tmp.CkpYWrFPXz/test/unittest/testAlignment.py:38: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/mock/pyrg/sate.fasta' mode='rU' encoding='UTF-8'> alg.read_filepath(get_data_path("mock/pyrg/sate.fasta")) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtendedAlignment (testAlignment.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testAlignment.py:107: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/simulated/test.fasta' mode='rU' encoding='UTF-8'> alg.read_filepath(get_data_path("simulated/test.fasta")) ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testAlignment.py:112: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/simulated/test.fas' mode='rU' encoding='UTF-8'> frg.read_filepath(get_data_path("simulated/test.fas")) ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testAlignment.py:130: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9cebl37h' mode='rU' encoding='UTF-8'> tmp = MutableAlignment().read_filepath(self.fp_dummy1) ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testAlignment.py:133: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpukv1vbgb' mode='rU' encoding='UTF-8'> tmp = MutableAlignment().read_filepath(self.fp_dummy2) ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9cebl37h' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:574: DeprecationWarning: 'U' mode is deprecated handle = open(path, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/tmp/cp1.extended.sto' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:27] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.CkpYWrFPXz/test/unittest/data/tmp/cp1.extended.sto) into base alignment (/tmp/tmp9cebl37h). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpukv1vbgb' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/tmp/cp2.extended.sto' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:27] alignment.py (line 556): INFO: Merging extension sto file (/tmp/tmp.CkpYWrFPXz/test/unittest/data/tmp/cp2.extended.sto) into base alignment (/tmp/tmpukv1vbgb). ok testReadOnlySubAlignment (testAlignment.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testAlignment.py:46: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/mock/pyrg/sate.fasta' mode='rU' encoding='UTF-8'> alg.read_filepath(get_data_path("mock/pyrg/sate.fasta")) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_make_checkpoints (testCheckPoint.Test) ... /tmp/tmp.CkpYWrFPXz/sepp/config.py:66: DeprecationWarning: This method will be removed in future versions. Use 'parser.read_file()' instead. cparser.readfp(filename) /tmp/tmp.CkpYWrFPXz/sepp/config.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/sepp.config' mode='r' encoding='UTF-8'> main_cmd_defaults = _read_config_file( ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:28] config.py (line 350): INFO: Seed number: 297834 [21:41:28] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:41:28] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> [21:41:28] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 20 placement: 20 [21:41:28] exhaustive.py (line 350): INFO: Breaking into 33 placement subsets. [21:41:28] exhaustive.py (line 397): INFO: Breaking into 33 alignment subsets. [21:41:28] filemgr.py (line 129): INFO: Root temp directory built: /tmp/sepp/output.ehmu63y1 [21:41:28] exhaustive.py (line 412): INFO: Breaking each alignment subset into 16 fragment chunks. [21:41:29] checkpointing.py (line 121): INFO: Checkpoint every 5 seconds [21:41:29] checkpointing.py (line 49): INFO: Checkpoint is being updated: /tmp/sepp/output.ehmu63y1/checkpoints/dumpjq1qx4pc /tmp/tmp.CkpYWrFPXz/sepp/checkpointing.py:50: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqh60n50h' mode='r' encoding='UTF-8'> oldTmpFile = open(checkpoint_manager.checkpoint_path).readlines() ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.ecrpk8g8.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.0got3kyj.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.bm7b24fi.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.rt71hsyo.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.u2b0do2q.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.sbq_632m.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.kpzilvp1.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.aai7i8xz.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.09f27taf.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.a4yvxno6.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ovgdweeg.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.y8qatf85.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.a_hs143b.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.2fr2qxwj.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.iebm_p2a.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.u_f2svua.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.0v_hptls.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.input.fkhvnltp.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.a3vyjgdi [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_1/hmmsearch.results.ou2x5yyz [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.input.7d_p0xwl.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_2/hmmsearch.results.xyicwhzj [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.input.khg9o3_g.fasta [21:41:30] checkpointing.py (line 68): INFO: Checkpoint Saved to: /tmp/sepp/output.ehmu63y1/checkpoints/dumpjq1qx4pc and linked in /tmp/tmpqh60n50h. [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_5/hmmsearch.results._73nvtzv [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_4/hmmsearch.results.s3mphxk7 [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_3/hmmsearch.results.snjeg5i4 [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_6/hmmsearch.results.nred9l5_ [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.input.rlcvil51.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.m_413_az.fasta [21:41:30] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_7/hmmsearch.results.ji72a_tw [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_8/hmmsearch.results.jzpkv58e [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.ln83_97i, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_9/hmmsearch.results.5p3hq04v [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_1/hmmsearch.results.2olssggl [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_5/hmmsearch.results.t6wdzj21 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.drdqqioh [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_2/hmmsearch.results.xto7utsg [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_3/hmmsearch.results.mevvymmn [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.input.id5z5sod.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.input.qqezevr2.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_4/hmmsearch.results.gjlqfgd5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_6/hmmsearch.results.ze_dzd4s [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_9/hmmsearch.results.kgpgexh0 [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.input.ew8_pmop.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_7/hmmsearch.results._282zy3w [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.input.r_65dgy0.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.rq_35ib4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_8/hmmsearch.results.zz_dg1p_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.sngxy6n5 [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.input.s17wf7n9.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_2/hmmsearch.results.84q5r95o [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_1/hmmsearch.results.5smjeyhk [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_3/hmmsearch.results.p39ay4y8 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_4/hmmsearch.results.6w97d0t2 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_6/hmmsearch.results.rvfoqr1x [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_9/hmmsearch.results.yfh9o9d9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_7/hmmsearch.results.ufp6ttct [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_5/hmmsearch.results.446109fu [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_8/hmmsearch.results.r402z1_z [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.input.zp6j8f5p.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.input.ql84bhi0.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.gsahdsf4 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_2/hmmsearch.results.761j8zr5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_3/hmmsearch.results.km0x348m [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_4/hmmsearch.results.z8hearz9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_5/hmmsearch.results.83ss9e9m [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_1/hmmsearch.results.1lhi7b0z [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_7/hmmsearch.results.ysjlya69 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_2/hmmsearch.results.vqojvyga [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_9/hmmsearch.results.7ouihfzx [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.9z_gmqwo [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_8/hmmsearch.results.kb95zgkd [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_6/hmmsearch.results.ud3h0rbs [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_3/hmmsearch.results.p2laz5yk [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_1/hmmsearch.results.wze3cx8n [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.input.dfmeqoct.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_4/hmmsearch.results.1kcsyptx [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_6/hmmsearch.results.g7k12hv5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_8/hmmsearch.results.za_sj5z8 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_2/hmmsearch.results.sd0g6bx2 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_9/hmmsearch.results.z8_dn9fj [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_4/hmmsearch.results.7ybx_np7 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_7/hmmsearch.results.dc7mt778 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.n9lna11p, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_5/hmmsearch.results.t3divgda [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_1/hmmsearch.results.uttve0lr [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_3/hmmsearch.results.kfe4720c [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_9/hmmsearch.results.eq13vb3c [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.input.zrl2p6s6.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_6/hmmsearch.results.4mlej39z [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.9vrtqm9i [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_5/hmmsearch.results.1o1sb2u6 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.tt_alj6b [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_7/hmmsearch.results.sv0j2du6 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_5/hmmsearch.results.d1hcgrn3 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.m54osjpt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_8/hmmsearch.results.v2o7efo0 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_4/hmmsearch.results.isqyiu5_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_1/hmmsearch.results._2c50opt [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_2/hmmsearch.results.is3dmsu_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_9/hmmsearch.results.dagyy3o_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_7/hmmsearch.results.dphi9qe9 [21:41:31] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.input.94h9i58a.fasta [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_3/hmmsearch.results.7xftx3n7 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_6/hmmsearch.results.w0l5bms5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.z50zhoya, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_8/hmmsearch.results.58nde60n [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_4/hmmsearch.results.8hhyohtr [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results.bf3n7n_m [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_6/hmmsearch.results.0uc2e916 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_5/hmmsearch.results.fmgnsfzt [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_2/hmmsearch.results.8ficjm7h [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_3/hmmsearch.results.hmnfcwlh [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_3/hmmsearch.results.2wkdlwkt [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_9/hmmsearch.results.gub2uh9x [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_7/hmmsearch.results.mbs_3nco [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_1/hmmsearch.results.fqwyjq71 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_5/hmmsearch.results.kcjd8ld9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_6/hmmsearch.results.okgal6mb [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.fyim97p3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_8/hmmsearch.results.lig1pm5k [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_2/hmmsearch.results.m4n3h1yy [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_9/hmmsearch.results.7sgtd1fi [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_7/hmmsearch.results.2j6rjajm [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_8/hmmsearch.results.95af6lo2 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_1/hmmsearch.results.r769qvxn [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.3_6i_ptt [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.pr_p0ez7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_4/hmmsearch.results.5z5rut6p [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_3/hmmsearch.results.afr4pou9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.rr3pubap [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_2/hmmsearch.results.pi3sapxn [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_1/hmmsearch.results._varrpqc [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_6/hmmsearch.results.zlwvb382 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_4/hmmsearch.results.xnpm_f1x [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_4/hmmsearch.results.l7_zdda8 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_5/hmmsearch.results.8_xcid6q [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_5/hmmsearch.results.0icskmhu [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_8/hmmsearch.results.l52e74e3 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_1/hmmsearch.results.j3z6b13c [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_7/hmmsearch.results.ja16uqc9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_9/hmmsearch.results.69d7zzb0 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_7/hmmsearch.results.rw73touq [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_3/hmmsearch.results.ezea6ui5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_2/hmmsearch.results.lv859on9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_9/hmmsearch.results.0puax4f_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_8/hmmsearch.results.2aqyal3i [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_6/hmmsearch.results.nqaio1n4 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.1_6tz1jw [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.4qr8rxok [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_1/hmmsearch.results.zxah_ddx [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_9/hmmsearch.results.1sz5nnb9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_6/hmmsearch.results.tefqr03i [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_2/hmmsearch.results.c1zzyhwr [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_3/hmmsearch.results.uoxoui3o [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_4/hmmsearch.results.tk9gmuj3 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_3/hmmsearch.results.5_n_u37m [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_7/hmmsearch.results.zc5_gucy [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_5/hmmsearch.results.rfhmgvoc [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_4/hmmsearch.results.5j7dxxoq [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_1/hmmsearch.results.sj3l10c7 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_8/hmmsearch.results.3txxpv7_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.o9ky2v8h [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_5/hmmsearch.results.6rrwub2m [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_6/hmmsearch.results.cw9isegi [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_2/hmmsearch.results.pf34w6nu [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_9/hmmsearch.results.ofy5qatv [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_8/hmmsearch.results.5rl91rn8 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.2k6x52l5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_7/hmmsearch.results.cife793l [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.sbp721td [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_2/hmmsearch.results.9yka0mbu [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_7/hmmsearch.results.3r_k95u5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_6/hmmsearch.results.9domidt9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_1/hmmsearch.results.ee85byo5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_2/hmmsearch.results.z5nxpri_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_4/hmmsearch.results.9t3d2atc [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_4/hmmsearch.results.z4v_emuq [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_3/hmmsearch.results.9t9h03jx [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_3/hmmsearch.results.r59g9w51 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results._l04ulf6 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_5/hmmsearch.results.87sn6w35 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_9/hmmsearch.results.ey16ggab [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_6/hmmsearch.results.1g346814 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_8/hmmsearch.results.twu7nvhg [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_5/hmmsearch.results.hha5mnwt [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_1/hmmsearch.results.bn6x914e [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_8/hmmsearch.results.z4m8uh90 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_7/hmmsearch.results.75_bc98c [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_3/hmmsearch.results.f8o46bss [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.llgm2n84 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_5/hmmsearch.results.dnq8dseg [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ynkkzaav, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_9/hmmsearch.results.ywwnyiyf [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_1/hmmsearch.results.ga0jdhee [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_7/hmmsearch.results.2n5y8fz0 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_9/hmmsearch.results.nq_hxmev [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.3jrni3jn [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_1/hmmsearch.results.x7h06d0b [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_2/hmmsearch.results.idu76hwl [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_6/hmmsearch.results.bz5js__h [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_9/hmmsearch.results.awvdrxef [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_7/hmmsearch.results.x8v164pd [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_8/hmmsearch.results.1iu0ou88 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_2/hmmsearch.results.7pk1cnfi [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_6/hmmsearch.results.2h5mw8pq [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_4/hmmsearch.results.gq615akm [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.1su3mla2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_4/hmmsearch.results.uhvph19f [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_5/hmmsearch.results.fbwsbz9s [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_2/hmmsearch.results.lqtalb0l [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_3/hmmsearch.results.58k31r99 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_5/hmmsearch.results.jnhk509_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_3/hmmsearch.results.6eopgk30 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.0g0p23tg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_8/hmmsearch.results.hynwx6k2 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_1/hmmsearch.results.qzce_l0d [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_4/hmmsearch.results._eoe49qe [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.oigc61qw [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_0/hmmsearch.results.hcm5cl6m [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_7/hmmsearch.results.x2wbswdt [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_6/hmmsearch.results._bzvv0p2 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_8/hmmsearch.results.kowtpuv5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_4/hmmsearch.results.75kvb5kc [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.gdss9_4h, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_9/hmmsearch.results.nlrhmdll [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_1/hmmsearch.results.gxj4ynp5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_2/hmmsearch.results.7mzsm1rl [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_5/hmmsearch.results.go57_a2d [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_7/hmmsearch.results.ldv1ee5b [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_2/hmmsearch.results.77_x4tj9 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_3/hmmsearch.results.c3e0gd9u [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_6/hmmsearch.results.rovy4m5r [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_9/hmmsearch.results.1hdhd7u2 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_4/hmmsearch.results.uqv7zbjs [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_1/hmmsearch.results.2zia7k9q [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_0/hmmsearch.results.qu19177z [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_8/hmmsearch.results.bamdhrt_ [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.model.upiwm34j, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/FC_20_0_6/hmmsearch.results.f7j_zto8 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_3/hmmsearch.results.1dqgzby7 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_8/hmmsearch.results.tkc0tmyb [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_7/hmmsearch.results.f1dvyapx [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_5/hmmsearch.results.3ah72jyw [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.model.tme783jt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/FC_23_0_9/hmmsearch.results.nsg4jydl [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_2/hmmsearch.results.pn911nas [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_0/hmmsearch.results.e18hmcwa [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_1/hmmsearch.results.rrwhnr6w [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_7/hmmsearch.results.buu7wztj [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_2/hmmsearch.results.1i82as71 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_6/hmmsearch.results.845utekv [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_3/hmmsearch.results.arw5bpxt [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_5/hmmsearch.results.nrp02n8t [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_4/hmmsearch.results.9n6agtwu [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_1/hmmsearch.results.6xzj19d5 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_4/hmmsearch.results.shwbva2y [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_0/hmmsearch.results.f25glrom [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_3/hmmsearch.results.jkd2wcr4 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_9/hmmsearch.results.c0q1y2v4 [21:41:31] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.model.ou0ab_dq, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/FC_22_0_8/hmmsearch.results._61vejac [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_5/hmmsearch.results.vt45_h9a [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_1/hmmsearch.results.di8wilur [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_6/hmmsearch.results.9esryo6x [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_9/hmmsearch.results.k1787mv1 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.usumryz3 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_4/hmmsearch.results.0vp0ntaz [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_7/hmmsearch.results.huwtj1yj [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_5/hmmsearch.results.2cucty3c [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_7/hmmsearch.results.h6oengiv [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.model.imkykzng, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/FC_24_0_8/hmmsearch.results.gq877bna [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_6/hmmsearch.results.p03hjhq1 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_9/hmmsearch.results.6ff6qk98 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_0/hmmsearch.results.ahbzdxkz [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_2/hmmsearch.results._a657105 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_4/hmmsearch.results.e2irs3zk [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_2/hmmsearch.results.xd_v1b8i [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_5/hmmsearch.results.po8umy50 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_3/hmmsearch.results.jycvcvtn [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.7ene_dvi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_8/hmmsearch.results.j12_l7hq [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_8/hmmsearch.results.h9ulyfzi [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_3/hmmsearch.results.7nh6yb56 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_6/hmmsearch.results.2yui7dp_ [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_9/hmmsearch.results.vzpkg0vk [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_1/hmmsearch.results.wt1nxdjv [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_0/hmmsearch.results.gsjdkujs [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_1/hmmsearch.results.e849rnt2 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.model.zsk0i5bz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/FC_19_0_7/hmmsearch.results.5h0w10fb [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_3/hmmsearch.results.gq4zdk7d [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_2/hmmsearch.results.n5usfk4w [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_8/hmmsearch.results.ujsh7u2e [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_5/hmmsearch.results.upr5pzfp [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_7/hmmsearch.results.l4zcohkg [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_9/hmmsearch.results.8040k_7r [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_3/hmmsearch.results.6dfd7h9y [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_6/hmmsearch.results.vyknjsna [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.model.v5rlcqbm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/FC_25_0_4/hmmsearch.results.qm864x7o [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_1/hmmsearch.results.bfvxtcir [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_0/hmmsearch.results.ema_q6ln [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_6/hmmsearch.results.m3v_jxwm [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_9/hmmsearch.results.8yepafup [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_7/hmmsearch.results.h5pxionm [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_4/hmmsearch.results.qfj92__g [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_2/hmmsearch.results.6edtuvue [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_5/hmmsearch.results.awgmk3xp [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_0/hmmsearch.results.9g7v4i9_ [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_1/hmmsearch.results.khg4xf09 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_8/hmmsearch.results.jb38zkva [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_3/hmmsearch.results.rswues96 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_5/hmmsearch.results._dgjlozg [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_6/hmmsearch.results.yf6hrob5 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_4/hmmsearch.results.0btv66mr [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_7/hmmsearch.results.r7ezu3pp [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_9/hmmsearch.results.w5yqfren [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_2/hmmsearch.results.zjtige2m [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_8/hmmsearch.results.i55y6gzb [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_0/hmmsearch.results.etkmjt48 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_3/hmmsearch.results.0ryz8gck [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.model.nbc5a7gm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/FC_32_0_2/hmmsearch.results.p514dvdx [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_6/hmmsearch.results.xxtqq_t5 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_1/hmmsearch.results.v4388m63 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_2/hmmsearch.results.7ll_5hwp [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_1/hmmsearch.results.ywdtcua1 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_7/hmmsearch.results.343h35yp [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_5/hmmsearch.results.rb2jsfy7 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_8/hmmsearch.results.f5qs01wh [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_4/hmmsearch.results.67zt9ch3 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_0/hmmsearch.results.sh63tpxg [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_3/hmmsearch.results.ghybjclk [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_5/hmmsearch.results.l72248t9 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_4/hmmsearch.results._kbqr3ry [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_6/hmmsearch.results.h0gjd38d [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.model.bkvdryx7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/FC_26_0_9/hmmsearch.results.jmflte2e [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_7/hmmsearch.results.kvvjzujd [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_8/hmmsearch.results.uwg4scnv [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_2/hmmsearch.results.53ro8elj [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_4/hmmsearch.results.zn7w3wdu [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_9/hmmsearch.results.bcx8ll_z [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_1/hmmsearch.results.lj2fanxm [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_0/hmmsearch.results.levq135s [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_6/hmmsearch.results.1f6bceqc [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_3/hmmsearch.results.3mfk07pa [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_7/hmmsearch.results.6fv_yqo6 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_0/hmmsearch.results.unisu77g [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_5/hmmsearch.results.c57s9aa7 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_8/hmmsearch.results.je3_s3rw [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_3/hmmsearch.results.fg5oawoa [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_6/hmmsearch.results.81ytqtmq [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_4/hmmsearch.results.515_ny6s [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_2/hmmsearch.results.qha13ahg [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_8/hmmsearch.results.tyrk_ain [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_7/hmmsearch.results.oavqds0l [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_5/hmmsearch.results.8ssfgyls [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_1/hmmsearch.results.sbtm_fwt [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.model.e0sp4lap, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/FC_29_0_9/hmmsearch.results.0qel4n_a [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_1/hmmsearch.results.k8fhj3o1 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.model.0hqv0i1f, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/FC_28_0_9/hmmsearch.results.e34aaukt [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_2/hmmsearch.results.dazn0tz5 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_5/hmmsearch.results.y9eye7j1 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_0/hmmsearch.results.if7xwmi2 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_3/hmmsearch.results.bu5l96nv [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_6/hmmsearch.results.o6d4uz9l [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_4/hmmsearch.results.3izt0gis [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_7/hmmsearch.results.sal3k3l5 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0xxwzm0lq.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_0/hmmsearch.results.rrok411p [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_295r4si7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_2/hmmsearch.results.ihoag5q5 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3jmhy5de_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_3/hmmsearch.results.vifkyifi [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4egdc67hn.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_4/hmmsearch.results.8pbzpbta [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_9/hmmsearch.results.5kgaq53x [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6q512xl7z.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_6/hmmsearch.results.kisx8e88 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_71eqqercf.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_7/hmmsearch.results.6x07fadz [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_98xcnlbz_.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_9/hmmsearch.results.r3mdhp10 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_8/hmmsearch.results.wcc0cpju [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1i878gl3v.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_1/hmmsearch.results.f7dn9lk8 [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.model.m38tt25w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8_1stcmmj.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/FC_31_0_8/hmmsearch.results.jp8wt1xt [21:41:32] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.model.notq1og0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5cmnd12ft.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/FC_30_0_5/hmmsearch.results.17wnapf6 [21:41:32] exhaustive.py (line 80): WARNING: Fragments [] are not scored against any subset [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_0. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.0got3kyj.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.prkqm4ug, fragments:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.6lv79vs3.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ovgdweeg.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.qf6absz3, fragments:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.88wxaqni.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.y8qatf85.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.5tbubj2_, fragments:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.jhv_c86x.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.bm7b24fi.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.mcoonryw, fragments:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.rowv5td5.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.a4yvxno6.fasta [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_1. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.aai7i8xz.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.8q1b85u5, fragments:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.nrxut70b.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.rt71hsyo.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_1/hmmalign.frag.lk8xie5l.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_2/hmmalign.frag.dq8inp2f.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.model._bgk4lfb, fragments:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_0/hmmalign.frag.2ybv48cx.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.input.ew8_pmop.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.model.93dqw75n, fragments:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_0/hmmalign.frag.jr9q303y.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.input.zp6j8f5p.fasta [21:41:32] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.dgy2uvdd, fragments:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.wnmx3haw.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_9. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.sbq_632m.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_8. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.a_hs143b.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_11. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.iebm_p2a.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_10. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.kpzilvp1.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_13. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.2fr2qxwj.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:32] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_14. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.09f27taf.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_15. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.u2b0do2q.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_12. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.ecrpk8g8.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_16. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.m_413_az.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_17. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.0v_hptls.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_18. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.u_f2svua.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_19. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_19/A_19_0/hmmbuild.input.id5z5sod.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_20. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_20/A_20_0/hmmbuild.input.fkhvnltp.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_23. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_23/A_23_0/hmmbuild.input.7d_p0xwl.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_22. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_22/A_22_0/hmmbuild.input.khg9o3_g.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_24. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_24/A_24_0/hmmbuild.input.rlcvil51.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_25. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_25/A_25_0/hmmbuild.input.qqezevr2.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_3. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ovgdweeg.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.u7noofox' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.u7noofox) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ovgdweeg.fasta). [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_26. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_26/A_26_0/hmmbuild.input.s17wf7n9.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_29. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_29/A_29_0/hmmbuild.input.dfmeqoct.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.backbone.gisu5jkl.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.tree.pcqfn5m4.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.extended.0.qtgfr11b.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.extended.0.qtgfr11b.jplace [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_30. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_30/A_30_0/hmmbuild.input.94h9i58a.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_31. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_31/A_31_0/hmmbuild.input.zrl2p6s6.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_32. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_32/A_32_0/hmmbuild.input.r_65dgy0.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_5. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.y8qatf85.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.jug1qzfa' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.jug1qzfa) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.y8qatf85.fasta). [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_28. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_28/A_28_0/hmmbuild.input.ql84bhi0.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_2. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.bm7b24fi.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.r5di1euk' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.r5di1euk) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.bm7b24fi.fasta). [21:41:33] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.backbone.yx9clt05.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.tree.meqhkk10.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.0.4sq34s98.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.0.4sq34s98.jplace [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_4. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.a4yvxno6.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.xrp4zydf' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.xrp4zydf) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.a4yvxno6.fasta). [21:41:33] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.backbone.n0gi7nvr.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.tree.lvm_57ey.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.0.t76r1_w7.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.0.t76r1_w7.jplace [21:41:33] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_7. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.rt71hsyo.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.vqzw57_4' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:33] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.vqzw57_4) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.rt71hsyo.fasta). [21:41:34] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_21. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.input.ew8_pmop.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_0/hmmalign.results.tf9vvgqa' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:34] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/FC_21_0_0/hmmalign.results.tf9vvgqa) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_21/A_21_0/hmmbuild.input.ew8_pmop.fasta). [21:41:34] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.backbone.pdc2y59c.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.tree.wd84llls.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.extended.0.t135_bc0.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.extended.0.t135_bc0.jplace [21:41:34] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_27. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.input.zp6j8f5p.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_0/hmmalign.results.ja2c8o3w' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:34] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/FC_27_0_0/hmmalign.results.ja2c8o3w) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_27/A_27_0/hmmbuild.input.zp6j8f5p.fasta). [21:41:34] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.backbone.ca2lfes7.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.tree.059a8kor.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.extended.0.ngy8gugu.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.extended.0.ngy8gugu.jplace [21:41:34] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_6. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.t3aw2hrc' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:34] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.t3aw2hrc) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_1/hmmalign.results.qm6yymq5' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:34] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_1/hmmalign.results.qm6yymq5) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_2/hmmalign.results.05ydbmli' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:34] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_2/hmmalign.results.05ydbmli) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.8_6eklfy.fasta). [21:41:34] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_21/pplacer.backbone.78fl3mfx.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_21/pplacer.tree.f2m8e2d9.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_21/pplacer.extended.0.r7a_1_ge.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_21/pplacer.extended.0.r7a_1_ge.jplace [21:41:34] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_27/pplacer.backbone.jfpvnt5q.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_27/pplacer.tree.c8zybsor.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_27/pplacer.extended.0.q4w5ofux.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_27/pplacer.extended.0.q4w5ofux.jplace [21:41:34] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.backbone.uxwgb42u.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.tree.qoqctuay.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.1.wejnndzh.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.1.wejnndzh.jplace [21:41:34] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.backbone.xg2klirx.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.tree.moy0s3nq.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.0.d5y1a3qb.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.0.d5y1a3qb.jplace [21:41:34] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.backbone.qu97rmdk.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.tree.0jcsnpg3.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.2.w28qn8gx.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.2.w28qn8gx.jplace [21:41:34] checkpointing.py (line 147): INFO: Paused Checkpointing. Cumulative time: 1 [21:41:36] jobs.py (line 131): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpm2sffcbo/output_placement.json [21:41:36] checkpointing.py (line 136): INFO: Stop Checkpointing. Cumulative time: 1 [21:41:36] algorithm.py (line 195): INFO: Current execution Finished in 7 seconds [21:41:36] algorithm.py (line 197): INFO: All checkpointed executions Finished in 1 cumulative time /tmp/tmp.CkpYWrFPXz/test/unittest/testCheckPoint.py:29: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> self.x.options.alignment_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testCheckPoint.py:32: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'> self.x.options.info_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testCheckPoint.py:36: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> self.x.options.tree_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testCheckPoint.py:39: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'> self.x.options.fragment_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testConfigFile (testConfig.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/config.py:66: DeprecationWarning: This method will be removed in future versions. Use 'parser.read_file()' instead. cparser.readfp(filename) /tmp/tmp.CkpYWrFPXz/sepp/config.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph9h80r7b' mode='r' encoding='UTF-8'> main_cmd_defaults = _read_config_file( ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.9/argparse.py:941: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/configs/test.config' mode='r' encoding='UTF-8'> setattr(namespace, self.dest, values) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:36] config.py (line 350): INFO: Seed number: 297834 ok testConfigFileMissingFile (testConfig.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:66: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/configs/test.config' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/config.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1fsmzz55' mode='r' encoding='UTF-8'> main_cmd_defaults = _read_config_file( ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.9/argparse.py:941: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'> setattr(namespace, self.dest, values) ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.9/argparse.py:941: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'> setattr(namespace, self.dest, values) ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.9/argparse.py:941: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/simulated/test.small.fas' mode='r' encoding='UTF-8'> setattr(namespace, self.dest, values) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:36] config.py (line 350): INFO: Seed number: 297834 ok testCpuCount (testConfig.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/simulated/test.small.fas' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testConfig.py:120: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/simulated/test.fas' mode='r' encoding='UTF-8'> config._options_singelton = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/config.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxh65g_ko' mode='r' encoding='UTF-8'> main_cmd_defaults = _read_config_file( ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:36] config.py (line 350): INFO: Seed number: 297834 [21:41:36] config.py (line 350): INFO: Seed number: 297834 ok testLog (testConfig.Test) ... ok testMainConfigFile (testConfig.Test) ... /tmp/tmp.CkpYWrFPXz/sepp/config.py:318: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead _LOG.warn( [21:41:36] config.py (line 318): WARNING: Main configuration file was not found at: /tmp/tmpxh65g_ko Proceeding without the main configuration... [21:41:36] config.py (line 350): INFO: Seed number: 297834 ok testError (testExternalJobs.Test) ... Traceback (most recent call last): File "/tmp/tmp.CkpYWrFPXz/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: find somerandomdirectorywewillneverhavehere_ordowe find: ‘somerandomdirectorywewillneverhavehere_ordowe’: No such file or directory ok testNoPipe (testExternalJobs.Test) ... [21:41:36] jobs.py (line 131): INFO: Finished test_find_job Job with input: pattern: . options: -name *.py (pipe: 1) /usr/lib/python3.9/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stdout' mode='w' encoding='UTF-8'> task = job = result = func = args = kwds = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.9/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='w' encoding='UTF-8'> task = job = result = func = args = kwds = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/jobs.py:169: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='r' encoding='UTF-8'> return open(self._kwargs["stderr"].name, 'r').read() ResourceWarning: Enable tracemalloc to get the object allocation traceback Traceback (most recent call last): File "/tmp/tmp.CkpYWrFPXz/sepp/jobs.py", line 150, in run raise JobError("\n".join([ sepp.scheduler.JobError: The following execution failed: find somerandomdirectorywewillneverhavehere_ordowe find: ‘somerandomdirectorywewillneverhavehere_ordowe’: No such file or directory /usr/lib/python3.9/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stdout' mode='w' encoding='UTF-8'> task = job = result = func = args = kwds = None ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.9/multiprocessing/pool.py:138: ResourceWarning: unclosed file <_io.TextIOWrapper name='./.stderr' mode='w' encoding='UTF-8'> task = job = result = func = args = kwds = None ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSuccess (testExternalJobs.Test) ... [21:41:36] jobs.py (line 131): INFO: Finished test_find_job Job with input: pattern: . options: -name test*.py (pipe: 0) [21:41:36] jobs.py (line 131): INFO: Finished test_find_job Job with input: pattern: .. options: -name testMerge.py (pipe: 0) ok testMerge (testMerge.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testMerge.py:25: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/tmp/tempmerge' mode='r' encoding='UTF-8'> stdindata = open(get_data_path("tmp/tempmerge")).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:37] jobs.py (line 131): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp.CkpYWrFPXz/test/unittest/data/tmp/mergedfile ok test_diamCent (testMidpoint.Test) ... [21:41:37] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:41:37] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> /usr/lib/python3.9/multiprocessing/pool.py:265: ResourceWarning: unclosed running multiprocessing pool _warn(f"unclosed running multiprocessing pool {self!r}", ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:37] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 40 placement: 40 [21:41:37] exhaustive.py (line 350): INFO: Breaking into 17 placement subsets. [21:41:37] exhaustive.py (line 397): INFO: Breaking into 17 alignment subsets. [21:41:37] exhaustive.py (line 412): INFO: Breaking each alignment subset into 16 fragment chunks. [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.w1esloaz.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.f5zr5zqx.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.11ebrw_1.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.smy7c4cf.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.snsis5q4.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.1sjdi67r.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.7iiphloz.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.x5yss5ae.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ku_95q2h.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.p4yr8ipv.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.rx61nlty, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input._p2dp8u3.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.7di98zjn.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.qddmeztb.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.fnmihcti.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.eissle77, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.t8dbwdvk.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.k23jvw_4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.i5w3w5ys, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.4n6okh2y, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.c05dx6e8.fasta [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.17opqg1g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.dsy3tg0t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.2663wy_3, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.ihg41xn6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1h5o9z3sm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4bwts9_0z.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_00950s_ht.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2dd6d4iv3.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7cx87laep.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vowhrq3k.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6_ksomcxm.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3ht19bbyv.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5b_0xhdkc.fasta, elim:99999999, filter:False, output:Piped [21:41:39] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.952cn9qf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9_w33xz8y.fasta, elim:99999999, filter:False, output:Piped [21:41:39] exhaustive.py (line 80): WARNING: Fragments [] are not scored against any subset [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.s8y260i5, fragments:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_0/hmmalign.frag.0tk757fh.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.qddmeztb.fasta [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_1/hmmalign.frag._wyqkpi4.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.smy7c4cf.fasta [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_2/hmmalign.frag.09pn3um2.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.oezl5_ee.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.klx0zos_, fragments:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.b6m2kt25.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.smy7c4cf.fasta [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_4. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:293: DeprecationWarning: 'U' mode is deprecated file_obj = open(filename, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.7iiphloz.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.6clkmbn_, fragments:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.j_a5pw6i.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.wde1iaer, fragments:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmalign.frag.phqng4o6.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ku_95q2h.fasta [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.5xydspqs, fragments:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.okw5wu6u.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.f5zr5zqx.fasta [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_5. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.w1esloaz.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.8tx333y4, fragments:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_0/hmmalign.frag.mrzjprjy.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.t8dbwdvk.fasta [21:41:40] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.83d9kh87, fragments:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.ecp7008x.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.fnmihcti.fasta [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_6. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.11ebrw_1.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_7. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.snsis5q4.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_8. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.p4yr8ipv.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_9. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.x5yss5ae.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_10. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input._p2dp8u3.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_12. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.1sjdi67r.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_13. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.7di98zjn.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_0. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.qddmeztb.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:574: DeprecationWarning: 'U' mode is deprecated handle = open(path, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.ohtw1kzb' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_0/hmmalign.results.ohtw1kzb) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.qddmeztb.fasta). [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_16. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.c05dx6e8.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_2. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.smy7c4cf.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.jfsb0gjk' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.jfsb0gjk) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.smy7c4cf.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_1/hmmalign.results.odxg0rh_' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_1/hmmalign.results.odxg0rh_) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.smy7c4cf.fasta). [21:41:40] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_0/pplacer.backbone.l27qxgxk.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_0/pplacer.tree.7au3tw0a.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_0/pplacer.extended.0.h6ux_4wz.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_0/pplacer.extended.0.h6ux_4wz.jplace [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_1. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.5ftkb9p8' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.5ftkb9p8) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.i4k0qc_6' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.i4k0qc_6) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_2/hmmalign.results.mbj9lv11' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_2/hmmalign.results.mbj9lv11) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.oy6cnt_s.fasta). [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_3. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ku_95q2h.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.ruq_7oj8' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmalign.results.ruq_7oj8) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ku_95q2h.fasta). [21:41:40] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.backbone.199bewse.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.tree.mx0vrrww.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.0.9hi6m44g.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.0.9hi6m44g.jplace [21:41:40] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.backbone.hlf7agz5.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.tree.qkdqs46s.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.1.hq71l8e_.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.1.hq71l8e_.jplace [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_11. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.f5zr5zqx.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.bv7youb6' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.bv7youb6) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.f5zr5zqx.fasta). [21:41:40] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.backbone.bh5yk42n.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.tree.5degb5rd.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.1.xn8fww27.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.1.xn8fww27.jplace [21:41:40] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.backbone.7fg8a62b.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.tree.k768dbe0.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.2.k3n6u17g.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.2.k3n6u17g.jplace [21:41:40] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.backbone.1f4diw3l.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.tree.5gu4ximx.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.0.9kmaq6rm.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.0.9kmaq6rm.jplace [21:41:40] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_15. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.t8dbwdvk.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.1agfv7zd' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:40] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_0/hmmalign.results.1agfv7zd) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.t8dbwdvk.fasta). [21:41:40] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.backbone.kbh3l08c.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.tree.sz9ywyfl.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.extended.0.uj9w8m32.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_3/pplacer.extended.0.uj9w8m32.jplace [21:41:41] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_14. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.fnmihcti.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.8v0c7h9q' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:41] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.8v0c7h9q) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.fnmihcti.fasta). [21:41:41] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.backbone.iy5986ll.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.tree.vp8g1iup.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.nrd90h4j.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.nrd90h4j.jplace [21:41:41] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_15/pplacer.backbone.rkt6blat.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_15/pplacer.tree.yuqw90eo.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_15/pplacer.extended.0.ch71satz.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_15/pplacer.extended.0.ch71satz.jplace [21:41:41] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.backbone.pqbdk05q.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.tree._kn5i16k.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.extended.0.xkpycvr6.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.extended.0.xkpycvr6.jplace [21:41:42] jobs.py (line 131): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp8am23k56/output_placement.json [21:41:42] algorithm.py (line 195): INFO: Current execution Finished in 4 seconds [21:41:42] algorithm.py (line 197): INFO: All checkpointed executions Finished in 13 cumulative time /tmp/tmp.CkpYWrFPXz/test/unittest/testMidpoint.py:27: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> self.x.options.alignment_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testMidpoint.py:30: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'> self.x.options.info_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testMidpoint.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> self.x.options.tree_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_diamMid (testMidpoint.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testMidpoint.py:56: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'> self.x.options.fragment_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:42] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:41:42] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> [21:41:42] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 40 placement: 40 [21:41:42] exhaustive.py (line 350): INFO: Breaking into 17 placement subsets. [21:41:42] exhaustive.py (line 397): INFO: Breaking into 17 alignment subsets. [21:41:42] exhaustive.py (line 412): INFO: Breaking each alignment subset into 16 fragment chunks. [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.ozst9ck3.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.dcz4ga0a.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.wa567_17.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.w2slii1f.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.gyw9t1t5.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.qwgk9twz.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.roievdlg.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.gr1wvc6b.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.dq69_g0m.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.btroadmw.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.nktfd0pq.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.hz41l74o.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.q0blimc8.fasta [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zchgwyh9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ni_n5yiy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:43] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.fc4cx5g7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.as348j2a.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.shcad16s.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.pltrhmwd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.fuixigjj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.faqyznpa.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.u8eim7jw, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.0ji0rouk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.hhxywgmd, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cwa2wke7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3czi042z0.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_2_brbi_ft.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jltlkn5x.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0l1taz53p.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_4x9ni9s6t.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_57lzq1suj.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8vwpcl83m.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_6ff2nap81.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_9yui7exuq.fasta, elim:99999999, filter:False, output:Piped [21:41:44] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.1lqn911e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7rlf5j5ze.fasta, elim:99999999, filter:False, output:Piped [21:41:44] exhaustive.py (line 80): WARNING: Fragments [] are not scored against any subset [21:41:44] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_0. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:293: DeprecationWarning: 'U' mode is deprecated file_obj = open(filename, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.dcz4ga0a.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.j_yec6qb, fragments:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.ogvxk2c6.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.roievdlg.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.t80i3kjt, fragments:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.4vna_bj4.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.qwgk9twz.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.lbrukn26, fragments:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.k6i9rctq.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.shcad16s.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_1/hmmalign.frag.0oy326ln.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.as348j2a.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.49b4g7_w, fragments:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.frag.yxdk8s3b.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.gr1wvc6b.fasta [21:41:44] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_3. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.nktfd0pq.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_2/hmmalign.frag.vjbr76pi.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.duqlx28_, fragments:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.es7ekdkw.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.as348j2a.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.fvh8puzt, fragments:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmalign.frag.tbjlpbe3.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.q0blimc8.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_0/hmmalign.frag.5m3_k4qm.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta [21:41:44] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.20ryb00n, fragments:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_1/hmmalign.frag.e31gny11.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta [21:41:44] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_4. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.w2slii1f.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:44] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_7. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.dq69_g0m.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:44] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_8. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.ozst9ck3.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_6. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.hz41l74o.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_9. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.wa567_17.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_10. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.btroadmw.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_15. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.gyw9t1t5.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_16. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.faqyznpa.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_1. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.roievdlg.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:574: DeprecationWarning: 'U' mode is deprecated handle = open(path, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.x0f999og' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.x0f999og) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.roievdlg.fasta). [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_5. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.qwgk9twz.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.30hyavgq' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.30hyavgq) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.qwgk9twz.fasta). [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_11. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.shcad16s.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.9m8me1rv' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.9m8me1rv) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.shcad16s.fasta). [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.backbone._ctgw2yw.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.tree.lggd_fb3.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.0.x_xjza16.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.0.x_xjza16.jplace [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_2. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.gr1wvc6b.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.hc6r5zu1' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmalign.results.hc6r5zu1) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.gr1wvc6b.fasta). [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.backbone.gitpp9hr.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.tree.xc0uhv85.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.0.5goa61tm.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.0.5goa61tm.jplace [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_12. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.as348j2a.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.3732c2dt' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.3732c2dt) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.as348j2a.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.mwo75hti' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_1/hmmalign.results.mwo75hti) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.as348j2a.fasta). [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.backbone.c4b09lae.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.tree.izqog77v.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.5ajnwfoy.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.5ajnwfoy.jplace [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_14. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.q0blimc8.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.2x9yeewi' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmalign.results.2x9yeewi) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.q0blimc8.fasta). [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.backbone.vpkuj4bj.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.tree.2dt1qq3l.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.0.x1jtwytz.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_2/pplacer.extended.0.x1jtwytz.jplace [21:41:45] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_13. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.4kj05rg7' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_0/hmmalign.results.4kj05rg7) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta). [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.backbone.nqgbmhfp.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.tree.ys_9oweh.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.extended.0.mr62okj3.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.extended.0.mr62okj3.jplace /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.96h0zf9s' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_1/hmmalign.results.96h0zf9s) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_2/hmmalign.results.fm1pnfux' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:45] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_2/hmmalign.results.fm1pnfux) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.1l8p7c5w.fasta). [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.backbone.o1azwddw.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.tree.sfikwbhr.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.extended.1.jv0gwgh9.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.extended.1.jv0gwgh9.jplace [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.backbone.re2u03vd.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.tree.ral5owoe.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.extended.0._m854ku_.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_14/pplacer.extended.0._m854ku_.jplace [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.backbone.x_jw6i_y.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.tree.r8xym73c.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.extended.2.ndld_inu.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.extended.2.ndld_inu.jplace [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.backbone._hy_b0i5.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.tree.wlvs2lju.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.extended.1.5qxilkbj.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.extended.1.5qxilkbj.jplace [21:41:45] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.backbone.mh40sefg.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.tree.tmv1oqf5.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.extended.0.5fmy1fmi.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_13/pplacer.extended.0.5fmy1fmi.jplace [21:41:47] jobs.py (line 131): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpuub9zkt2/output_placement.json [21:41:47] algorithm.py (line 195): INFO: Current execution Finished in 4 seconds [21:41:47] algorithm.py (line 197): INFO: All checkpointed executions Finished in 18 cumulative time /tmp/tmp.CkpYWrFPXz/test/unittest/testMidpoint.py:27: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> self.x.options.alignment_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testMidpoint.py:30: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'> self.x.options.info_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testMidpoint.py:34: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> self.x.options.tree_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_fake_jobs (testSepp.Test) ... /tmp/tmp.CkpYWrFPXz/test/unittest/testSepp.py:28: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> self.x.options.alignment_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testSepp.py:31: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info' mode='r' encoding='UTF-8'> self.x.options.info_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testSepp.py:35: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> self.x.options.tree_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/test/unittest/testSepp.py:83: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/input_fragments.fasta' mode='r' encoding='UTF-8'> self.x.options.fragment_file = open( ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:47] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:41:47] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> [21:41:47] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 40 placement: 40 [21:41:47] exhaustive.py (line 350): INFO: Breaking into 19 placement subsets. [21:41:47] exhaustive.py (line 397): INFO: Breaking into 19 alignment subsets. [21:41:47] exhaustive.py (line 412): INFO: Breaking each alignment subset into 16 fragment chunks. [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.41t7fnge.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.m1kjir1u.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.u1jbo1wr.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.lmiwfm7e.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.ee_qlt0a.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.l40_qjh6.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.ttbkrux6, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.4q878liy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.l3rgthfu.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.sq4nloq_.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.o5o83uw2.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.29vkccn1, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.8i46hf32.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.9i36w6qz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.u1e6mlyn, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.g3qqgm_u.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.vdp7eisj, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model._7wwljw5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.zhbo9l_x, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.ts5pnx2x.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.tr2r9l6j.fasta [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.pjuvby3g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:48] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.b506xvpp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.0e_7iamm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.6zj7jety, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.m7twa_1h.fasta [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.2rvpyfq9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.ia8fd1bh.fasta [21:41:49] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.3mq84p3g.fasta [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.klytk4j4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.lw70xl3e, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.k59ywbea.fasta [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.wnl4wenv, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.a2zvly4g, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.dvtpx4ya.fasta [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.ha7s8_cg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.dd9e67q_.fasta [21:41:49] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.je1lb64_, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0gf55x6bq.fasta, elim:99999999, filter:False, output:Piped [21:41:49] exhaustive.py (line 80): WARNING: Fragments [] are not scored against any subset [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_0. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:293: DeprecationWarning: 'U' mode is deprecated file_obj = open(filename, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.m1kjir1u.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_1. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.tr2r9l6j.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.u1e6mlyn, fragments:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.xrkioltp.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.ee_qlt0a.fasta [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_2. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.lmiwfm7e.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_4. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.sq4nloq_.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_3. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.g3qqgm_u.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_5. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.m7twa_1h.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_6. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.l3rgthfu.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_7. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.ia8fd1bh.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_8. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.l40_qjh6.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_9. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.3mq84p3g.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_10. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.41t7fnge.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_12. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.8i46hf32.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_13. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.u1jbo1wr.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_14. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.ts5pnx2x.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:49] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_15. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.o5o83uw2.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:50] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_16. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.k59ywbea.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:50] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_17. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.dvtpx4ya.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:50] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_18. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.dd9e67q_.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:50] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_11. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.ee_qlt0a.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:574: DeprecationWarning: 'U' mode is deprecated handle = open(path, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.33omkng5' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:50] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.33omkng5) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.ee_qlt0a.fasta). [21:41:50] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.backbone.dcriuh3e.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.tree.wzrh1idz.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.hd0o_mtc.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.hd0o_mtc.jplace [21:41:51] jobs.py (line 131): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmpa44ek21w/output_placement.json [21:41:51] algorithm.py (line 195): INFO: Current execution Finished in 4 seconds [21:41:51] algorithm.py (line 197): INFO: All checkpointed executions Finished in 22 cumulative time ok test_id_collision_collision (testSepp.Test) ... [21:41:51] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:41:51] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> [21:41:51] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 40 placement: 40 [21:41:51] exhaustive.py (line 350): INFO: Breaking into 19 placement subsets. [21:41:51] exhaustive.py (line 397): INFO: Breaking into 19 alignment subsets. ok test_id_collision_working (testSepp.Test) ... [21:41:51] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:41:51] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> [21:41:51] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 40 placement: 40 [21:41:51] exhaustive.py (line 350): INFO: Breaking into 19 placement subsets. [21:41:52] exhaustive.py (line 397): INFO: Breaking into 19 alignment subsets. [21:41:52] exhaustive.py (line 412): INFO: Breaking each alignment subset into 16 fragment chunks. [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.2qk9ovih.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.wkuxne2e.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.atx34b54.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.grxmq_ch.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input._1rr5q0m.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.bj9f2fo9.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.djn_hq16.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.fpwq72nc.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.bopuot4g.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.oc6h_d77.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.gu17c62l.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ssdykn5_.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.x5i62yvg, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.h3xuv4tw.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.b5vdun2p.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.m22nfy8_.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.tklfc636, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.nfftv199, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.xz9dk6iw.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.207l1izw.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.uixlxfmt.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input._fm3gfuk.fasta [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.f2cuwhjo, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.wicsr5i9, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.7z7pjkab, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.6yhwscl4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:53] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.lrw20qgb, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.an9k_wse, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.lr4xvzz2, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_1jn5_96et.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_3sn101dfm.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_0q4dgfk21.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_457b2roep.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_69021n8x0.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.8vx9xlof, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_5ttkcstqc.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_7mdjlvn6q.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_20z1dccwd.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_91m2m8p7k.fasta, elim:99999999, filter:False, output:Piped [21:41:54] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.f1op0w5u, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_8roea_7as.fasta, elim:99999999, filter:False, output:Piped [21:41:54] exhaustive.py (line 80): WARNING: Fragments [] are not scored against any subset [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_0. [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_1/hmmalign.frag.7blt8ma2.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.bj9f2fo9.fasta /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:293: DeprecationWarning: 'U' mode is deprecated file_obj = open(filename, 'rU') [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_1/hmmalign.frag.3f9gywib.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.fpwq72nc.fasta [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_1/hmmalign.frag.ci_u3m2u.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.wkuxne2e.fasta /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.b5vdun2p.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.wnw66x9k, fragments:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmalign.frag.uy2fx7fz.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input._1rr5q0m.fasta [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.4bchep7d, fragments:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.frag.n4skitnt.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.bj9f2fo9.fasta [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.rls0dsyy, fragments:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmalign.frag.ws9x3t0x.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.fpwq72nc.fasta [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model.kf8oggzp, fragments:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.frag.ondply50.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.wkuxne2e.fasta [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.vs7ix6e0, fragments:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmalign.frag.u5jpfscn.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.djn_hq16.fasta [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.7np57brt, fragments:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.efoceu20.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.xz9dk6iw.fasta [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_2. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.oc6h_d77.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.lc0vh6bu, fragments:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmalign.frag.4g379qxa.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.gu17c62l.fasta [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_3. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.ssdykn5_.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_8. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.m22nfy8_.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_9. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.grxmq_ch.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_10. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.2qk9ovih.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_13. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input.bopuot4g.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_14. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.h3xuv4tw.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_15. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.atx34b54.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_16. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input._fm3gfuk.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:54] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_17. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.uixlxfmt.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_18. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.207l1izw.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_6. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input._1rr5q0m.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:574: DeprecationWarning: 'U' mode is deprecated handle = open(path, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.bp7_u008' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmalign.results.bp7_u008) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input._1rr5q0m.fasta). [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_5. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.bj9f2fo9.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.3zbngcdb' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmalign.results.3zbngcdb) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.bj9f2fo9.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.ft51y3lu' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_1/hmmalign.results.ft51y3lu) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.bj9f2fo9.fasta). [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_4. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.fpwq72nc.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.476n1yv4' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmalign.results.476n1yv4) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.fpwq72nc.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.1pbm6j5f' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_1/hmmalign.results.1pbm6j5f) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.fpwq72nc.fasta). [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.backbone.zkeqoz7h.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.tree.hsw_h2yc.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.0.jc2b7vu6.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_6/pplacer.extended.0.jc2b7vu6.jplace [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.backbone._2qr_bkr.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.tree.4resmdpl.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.1.f1h4nvki.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.1.f1h4nvki.jplace [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.backbone.cbg1bv4v.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.tree.q5ktch52.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.0.4wewns80.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_5/pplacer.extended.0.4wewns80.jplace [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_1. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.wkuxne2e.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.6ta6b4_l' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmalign.results.6ta6b4_l) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.wkuxne2e.fasta). /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.aiil9i5b' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_1/hmmalign.results.aiil9i5b) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.wkuxne2e.fasta). [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_7. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.djn_hq16.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.cn2gznci' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmalign.results.cn2gznci) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.djn_hq16.fasta). [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.backbone.24n5t0me.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.tree.25q3v8qe.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.extended.1.u4dl7v1r.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.extended.1.u4dl7v1r.jplace [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.backbone.n7pi4tbu.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.tree.dbn3htf3.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.extended.0.rjm6bxu8.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_4/pplacer.extended.0.rjm6bxu8.jplace [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_11. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.xz9dk6iw.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.vxy5wr3f' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.vxy5wr3f) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.xz9dk6iw.fasta). [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.backbone._8hg0a80.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.tree.z4bwpwa9.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.0.vfu5t9e4.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.0.vfu5t9e4.jplace [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.backbone.wwniuon0.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.tree.yesjsjmp.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.1.fdkue8ro.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_1/pplacer.extended.1.fdkue8ro.jplace [21:41:55] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_12. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.gu17c62l.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.rclqrnwp' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:55] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmalign.results.rclqrnwp) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.gu17c62l.fasta). [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.backbone.x74ec5ia.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.tree.xlj3wvzc.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.extended.0.8ex05yto.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_7/pplacer.extended.0.8ex05yto.jplace [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.backbone.1gkur9f3.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.tree.ydrzqpat.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.69wchun2.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.69wchun2.jplace [21:41:55] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.backbone.2igyy4_p.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.tree.3irpj_t6.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.extended.0.mumf3n9j.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_12/pplacer.extended.0.mumf3n9j.jplace [21:41:57] jobs.py (line 131): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmp4fprjdn6/output_placement.json [21:41:57] algorithm.py (line 195): INFO: Current execution Finished in 5 seconds [21:41:57] algorithm.py (line 197): INFO: All checkpointed executions Finished in 28 cumulative time ok test_notpiped_jobs (testSepp.Test) ... [21:41:57] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:41:57] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> [21:41:57] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 40 placement: 40 [21:41:57] exhaustive.py (line 350): INFO: Breaking into 19 placement subsets. [21:41:57] exhaustive.py (line 397): INFO: Breaking into 19 alignment subsets. [21:41:57] exhaustive.py (line 412): INFO: Breaking each alignment subset into 16 fragment chunks. [21:41:58] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.5qnkkix8.fasta [21:41:58] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.cx7fjiod.fasta [21:41:58] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.jnh4zsof.fasta [21:41:58] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.9y16uvlx.fasta [21:41:58] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.nlkr4ahe.fasta [21:41:58] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.model.t71vj1x7, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/FC_0_0_0/hmmsearch.results.15qmwddh [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.model.jim5v1xs, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/FC_12_0_0/hmmsearch.results.5qltrszi [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.cdocz3sy.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.model.v9i9_wd5, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/FC_3_0_0/hmmsearch.results.brjsnx5p [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.i6b9ke6n.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.lrzy6yjl.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.model.p1hr18ka, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/FC_5_0_0/hmmsearch.results.e2y1aw4t [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.model.6w6o0gwf, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/FC_7_0_0/hmmsearch.results.897qvcd3 [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.model._ic9zi46, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/FC_1_0_0/hmmsearch.results._tzwins4 [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.model.onzordk1, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/FC_10_0_0/hmmsearch.results.2483_i_2 [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.model.u3ebw6ax, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/FC_14_0_0/hmmsearch.results.22od69ct [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.g21ltf5_.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.9jbihvu6.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.model.0lzhksxz, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/FC_9_0_0/hmmsearch.results.9012tve0 [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.ispqczaz.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.6xf0b6li.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.s3qnjgz6.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.model.2yndmtz0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/FC_15_0_0/hmmsearch.results.rs4mnj2u [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.model.m8dhf54t, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/FC_8_0_0/hmmsearch.results.yrzr4udv [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.qyhjdzb8.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input._8fcf7rc.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.model.cajqewqe, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/FC_6_0_0/hmmsearch.results.96t_zudo [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.model.h82s8jg0, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/FC_2_0_0/hmmsearch.results.5h5avedr [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.7037haob.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.model.cgytefdk, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/FC_13_0_0/hmmsearch.results.0_j4rp0m [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.ka2b5t45, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmsearch.results.6neeibne [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.model.88tq60j4, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/FC_4_0_0/hmmsearch.results.zi1xs7t1 [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.zv6ari0o.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.ow1yqy5f.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmbuild Job with input: /tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.xcshe_7o.fasta [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.model.y_gjspzi, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/FC_18_0_0/hmmsearch.results.dap0rdc9 [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.model.buiywinm, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/FC_16_0_0/hmmsearch.results.lr0jpdjh [21:41:59] jobs.py (line 131): INFO: Finished hmmsearch Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.model.6kx7jxes, fragments:/tmp/sepp/output.ehmu63y1/fragment_chunks/fragment_chunk_04ncpzhoc.fasta, elim:99999999, filter:False, output:/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/FC_17_0_0/hmmsearch.results.vamxed4n [21:41:59] exhaustive.py (line 80): WARNING: Fragments [] are not scored against any subset [21:41:59] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_0. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:293: DeprecationWarning: 'U' mode is deprecated file_obj = open(filename, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_0/A_0_0/hmmbuild.input.5qnkkix8.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:41:59] jobs.py (line 131): INFO: Finished hmmalign Job with input: model:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.model.ka2b5t45, fragments:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.frag.z9aqzdgm.fasta, trim:False, base_alignment:/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.qyhjdzb8.fasta [21:41:59] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_1. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_1/A_1_0/hmmbuild.input.i6b9ke6n.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_2. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_2/A_2_0/hmmbuild.input.6xf0b6li.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_3. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_3/A_3_0/hmmbuild.input.cx7fjiod.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_4. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_4/A_4_0/hmmbuild.input.7037haob.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_5. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_5/A_5_0/hmmbuild.input.9y16uvlx.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_6. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_6/A_6_0/hmmbuild.input.s3qnjgz6.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_8. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_8/A_8_0/hmmbuild.input.ispqczaz.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_9. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_9/A_9_0/hmmbuild.input.g21ltf5_.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_7. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_7/A_7_0/hmmbuild.input.nlkr4ahe.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_10. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_10/A_10_0/hmmbuild.input.lrzy6yjl.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_12. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_12/A_12_0/hmmbuild.input.jnh4zsof.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_13. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_13/A_13_0/hmmbuild.input._8fcf7rc.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_14. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_14/A_14_0/hmmbuild.input.cdocz3sy.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_15. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_15/A_15_0/hmmbuild.input.9jbihvu6.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_16. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_16/A_16_0/hmmbuild.input.ow1yqy5f.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:00] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_17. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_17/A_17_0/hmmbuild.input.xcshe_7o.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:01] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_18. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_18/A_18_0/hmmbuild.input.zv6ari0o.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:01] exhaustive.py (line 151): INFO: Merging sub-alignments for placement problem : P_11. /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:544: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.qyhjdzb8.fasta' mode='rU' encoding='UTF-8'> self.read_filepath(base_alignment, "FASTA") ResourceWarning: Enable tracemalloc to get the object allocation traceback /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:574: DeprecationWarning: 'U' mode is deprecated handle = open(path, 'rU') /tmp/tmp.CkpYWrFPXz/sepp/alignment.py:555: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.8pso5kl8' mode='rU' encoding='UTF-8'> ext.read_extended_alignment(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback [21:42:01] alignment.py (line 556): INFO: Merging extension sto file (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/FC_11_0_0/hmmalign.results.8pso5kl8) into base alignment (/tmp/sepp/output.ehmu63y1/root/P_11/A_11_0/hmmbuild.input.qyhjdzb8.fasta). [21:42:01] jobs.py (line 131): INFO: Finished pplacer Job with input: backbone_alignment_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.backbone.t7ff5xfw.fasta, tree_file:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.tree.a30357nt.tre, info_file:/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info, extended alignment:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.q2h5viq4.fasta, output:/tmp/sepp/output.ehmu63y1/root/P_11/pplacer.extended.0.q2h5viq4.jplace [21:42:02] jobs.py (line 131): INFO: Finished jsonmerger Job with input: input:pipe output:/tmp/tmphlteeczu/output_placement.json [21:42:02] algorithm.py (line 195): INFO: Current execution Finished in 5 seconds [21:42:02] algorithm.py (line 197): INFO: All checkpointed executions Finished in 33 cumulative time ok test_seqnames_whitespaces (testSepp.Test) ... [21:42:02] algorithm.py (line 258): INFO: Reading input alignment: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta' mode='r' encoding='UTF-8'> [21:42:02] algorithm.py (line 265): INFO: Reading input tree: <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk' mode='r' encoding='UTF-8'> [21:42:02] algorithm.py (line 238): INFO: Decomposition Sizes are set to alignment: 40 placement: 40 [21:42:02] exhaustive.py (line 350): INFO: Breaking into 19 placement subsets. [21:42:02] exhaustive.py (line 397): INFO: Breaking into 19 alignment subsets. ok ---------------------------------------------------------------------- Ran 20 tests in 36.429s OK sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp.CkpYWrFPXz/test/unittest/data/configs/test2.config' mode='r' encoding='UTF-8'> make[1]: Leaving directory '/build/sepp-4.3.10+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/sepp-4.3.10+dfsg' dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/sepp-4.3.10+dfsg/debian/sepp running install running build running build_py running build_scripts running install_lib creating /build/sepp-4.3.10+dfsg/debian/sepp/usr creating /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib creating /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9 creating /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages creating /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/__init__.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/algorithm.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/alignment.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/checkpointing.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/decompose_tree.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/exhaustive.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/filemgr.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/jobs.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/math_utils.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/metagenomics.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/problem.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/scheduler.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/scratch.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/tree.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/config.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/ensemble.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/exhaustive_tipp.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp copying /build/sepp-4.3.10+dfsg/.pybuild/cpython3_3.9/build/sepp/exhaustive_upp.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/__init__.py to __init__.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/algorithm.py to algorithm.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/alignment.py to alignment.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/checkpointing.py to checkpointing.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/decompose_tree.py to decompose_tree.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/exhaustive.py to exhaustive.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/filemgr.py to filemgr.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/jobs.py to jobs.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/math_utils.py to math_utils.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/metagenomics.py to metagenomics.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/problem.py to problem.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/scheduler.py to scheduler.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/scratch.py to scratch.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/tree.py to tree.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/config.py to config.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/ensemble.py to ensemble.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/exhaustive_tipp.py to exhaustive_tipp.cpython-39.pyc byte-compiling /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp/exhaustive_upp.py to exhaustive_upp.cpython-39.pyc running install_data copying home.path -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/ running install_egg_info running egg_info creating sepp.egg-info writing sepp.egg-info/PKG-INFO writing dependency_links to sepp.egg-info/dependency_links.txt writing requirements to sepp.egg-info/requires.txt writing top-level names to sepp.egg-info/top_level.txt writing manifest file 'sepp.egg-info/SOURCES.txt' reading manifest file 'sepp.egg-info/SOURCES.txt' writing manifest file 'sepp.egg-info/SOURCES.txt' Copying sepp.egg-info to /build/sepp-4.3.10+dfsg/debian/sepp/usr/lib/python3.9/dist-packages/sepp-4.3.10.egg-info Skipping SOURCES.txt running install_scripts creating /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin copying build/scripts-3.9/run_tipp_tool.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin copying build/scripts-3.9/split_sequences.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin copying build/scripts-3.9/run_abundance.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin copying build/scripts-3.9/run_upp.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin copying build/scripts-3.9/run_tipp.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin copying build/scripts-3.9/run_sepp.py -> /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin changing mode of /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin/run_tipp_tool.py to 755 changing mode of /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin/split_sequences.py to 755 changing mode of /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin/run_abundance.py to 755 changing mode of /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin/run_upp.py to 755 changing mode of /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin/run_tipp.py to 755 changing mode of /build/sepp-4.3.10+dfsg/debian/sepp/usr/bin/run_sepp.py to 755 # Deleting upstream configuration file, which we are not packaging. rm -f debian/sepp/usr/home.path # Moving split_sequences into the subdirectory /usr/share/sepp/util, as it is # not really part of the software but instead a helper script. mkdir -p debian/sepp/usr/share/sepp mv debian/sepp/usr/bin/split_sequences.py debian/sepp/usr/share/sepp # Not installing upp for now. rm -f debian/sepp/usr/bin/run_upp.py make[1]: Leaving directory '/build/sepp-4.3.10+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/sepp-4.3.10+dfsg' dh_installman --language=C make[1]: Leaving directory '/build/sepp-4.3.10+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package sepp: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'sepp' in '../sepp_4.3.10+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../sepp_4.3.10+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1370554 and its subdirectories I: Current time: Sat Dec 24 21:42:09 -12 2022 I: pbuilder-time-stamp: 1671961329 Mon Nov 22 03:19:08 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Nov 22 03:19:08 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Nov 22 03:22:49 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Nov 22 03:22:49 UTC 2021 I: sepp_4.3.10+dfsg-5_amd64.changes: Format: 1.8 Date: Thu, 24 Dec 2020 16:11:31 +0100 Source: sepp Binary: sepp Architecture: amd64 Version: 4.3.10+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: sepp - phylogeny with ensembles of Hidden Markov Models Changes: sepp (4.3.10+dfsg-5) unstable; urgency=medium . * Merging d/sepp.install and d/install * Adding manpage for run-sepp.sh * Fixing typo in d/u/metadata Checksums-Sha1: 5b8b82de5ef09193500b432364d841410d499625 7031 sepp_4.3.10+dfsg-5_amd64.buildinfo f43dd49e78b98d2d5c5ccfead1774976deb3dfc5 183876 sepp_4.3.10+dfsg-5_amd64.deb Checksums-Sha256: e236a758863141d18b956bdde5abff0a7d686da1cdfb050f88ded1fb08329c9c 7031 sepp_4.3.10+dfsg-5_amd64.buildinfo dbc251986f79b97548bbad2522a342111b3b82fda366571f5e467794c767d14b 183876 sepp_4.3.10+dfsg-5_amd64.deb Files: da42ce18b95319684c8b8cb1b740331a 7031 science optional sepp_4.3.10+dfsg-5_amd64.buildinfo ebde137cc761701ae1a293d08d3a3753 183876 science optional sepp_4.3.10+dfsg-5_amd64.deb Mon Nov 22 03:22:51 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.5zO9UsImA7/sepp_4.3.10+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.5zO9UsImA7/sepp_4.3.10+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.5zO9UsImA7/sepp_4.3.10+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.5zO9UsImA7/b1/sepp_4.3.10+dfsg-5_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.5zO9UsImA7/b2/sepp_4.3.10+dfsg-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.265s) 0.265s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Nov 22 03:22:52 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 22 03:22:52 UTC 2021 I: sepp from bullseye built successfully and reproducibly on amd64. Mon Nov 22 03:22:53 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Nov 22 03:22:53 UTC 2021 I: Submitting 8.0K b1/sepp_4.3.10+dfsg-5_amd64.buildinfo.asc Mon Nov 22 03:22:54 UTC 2021 I: Submitting 8.0K b2/sepp_4.3.10+dfsg-5_amd64.buildinfo.asc Mon Nov 22 03:22:55 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 22 03:22:55 UTC 2021 I: Done submitting .buildinfo files. Mon Nov 22 03:22:55 UTC 2021 I: Removing signed sepp_4.3.10+dfsg-5_amd64.buildinfo.asc files: removed './b1/sepp_4.3.10+dfsg-5_amd64.buildinfo.asc' removed './b2/sepp_4.3.10+dfsg-5_amd64.buildinfo.asc'