Sat Jan 6 21:53:46 UTC 2024 I: starting to build amp/bullseye/arm64 on jenkins on '2024-01-06 21:53' Sat Jan 6 21:53:46 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/13317/console.log Sat Jan 6 21:53:46 UTC 2024 I: Downloading source for bullseye/amp=0.6.1-1 --2024-01-06 21:53:47-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/amp/amp_0.6.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2095 (2.0K) [text/prs.lines.tag] Saving to: ‘amp_0.6.1-1.dsc’ 0K .. 100% 103M=0s 2024-01-06 21:53:47 (103 MB/s) - ‘amp_0.6.1-1.dsc’ saved [2095/2095] Sat Jan 6 21:53:48 UTC 2024 I: amp_0.6.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: amp Binary: python3-amp Architecture: any Version: 0.6.1-1 Maintainer: Debian Science Maintainers Uploaders: Muammar El Khatib Homepage: https://bitbucket.org/andrewpeterson/amp Standards-Version: 4.0.0 Vcs-Browser: https://salsa.debian.org/science-team/amp Vcs-Git: https://salsa.debian.org/science-team/amp.git Build-Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server Package-List: python3-amp deb science optional arch=any Checksums-Sha1: 5a5a3c352695c5e480e3abdf7d5c988d8ca40e61 3250424 amp_0.6.1.orig.tar.gz 7e67aac6160db68d82eac927c54c3039bbc76fa3 3428 amp_0.6.1-1.debian.tar.xz Checksums-Sha256: 0111cda57c55caa21529c1fae53625e6c9a9653434e0be8d54d6d1a46042116f 3250424 amp_0.6.1.orig.tar.gz a7a870c8f5a33d0d5158a80355a73716f5326bdbd17b56af876039106a34024e 3428 amp_0.6.1-1.debian.tar.xz Files: 8e5350ac9cc6d1857ade89d63cbbd825 3250424 amp_0.6.1.orig.tar.gz 1edd42a5bafc1976ddb7852f741e2548 3428 amp_0.6.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEi3hoeGwz5cZMTQpICBa54Yx2K60FAlvV0RwACgkQCBa54Yx2 K60QGhAAkpWbcW9JH6r7cYCBjGs5VjM6icY++Tafozh2ve0+OyvDm2oX5IfLfboc rmlIrqdHstufIfg1d+J4wz5lIv02HTLHjHxKTtoLgDDaWeKx1fH2oxXEY1vLBSGe V9+voE6q8LD/GrvWTVWqzEp2pdRQlwwfI+DsPw3hQ3JsOIhIiC3oN5Ker/56h27J 6jwjndv1IdJ9hjaROdJdGYawJ4eDrmi7vfM90YAOp5QxMxZuWct1JVllSYUy/oRk ZWhkWQBXk5YPucuZDWk81lC3JG7vIF3JV0wN9lT/Zr0miXq6bWk0oDyiTXCFqXz4 vcavZviEIcSh16HSMXgReLv/LptX/IgCWRSMoBq7L2cdDWT5Ypv0iIq9APElUKHp /oz1se61DgDi2MHLYEDQ+nlJEStM0SvvE0sOlnJf2pQ3oxLvK8v1pRz4laokaRjL WTk6SejTwvYcvtfp0/z8akZifhHHh9x826dr009lCK6Dr0c6qqheETRJKvCVwKww FgL41Si9rNkUlNEWJYCMCIHMwIRgqFEx/OAN5y5GAxhQxBv+TkXAPBJ1Ljq+obM8 hsFHwbnLNgRBGGpHMl1Z0/paaX6NYdm9HDB9rYUQrcpJl55PltnIpMx0AYcSdQ5d XHIhTFApqu0IULIGmc1PkZjXlrf40Bwq035iChvGm9RR41CDyq8= =BG7y -----END PGP SIGNATURE----- Sat Jan 6 21:53:48 UTC 2024 I: Checking whether the package is not for us Sat Jan 6 21:53:48 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Sat Jan 6 21:53:48 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Sat Jan 6 21:55:21 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 7 16:16:51 -12 2025 I: pbuilder-time-stamp: 1738988211 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [amp_0.6.1-1.dsc] I: copying [./amp_0.6.1.orig.tar.gz] I: copying [./amp_0.6.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.p1eTBrWv/trustedkeys.kbx': General error gpgv: Signature made Sun Oct 28 15:09:16 2018 gpgv: using RSA key 8B7868786C33E5C64C4D0A480816B9E18C762BAD gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./amp_0.6.1-1.dsc dpkg-source: info: extracting amp in amp-0.6.1 dpkg-source: info: unpacking amp_0.6.1.orig.tar.gz dpkg-source: info: unpacking amp_0.6.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile.patch dpkg-source: info: applying 03_tools.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2331940/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8761b59591dc4995a4fc714b34b0047c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2331940' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mO1zWMZo/pbuilderrc_uZ9Z --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mO1zWMZo/b1 --logfile b1/build.log amp_0.6.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.104:3128' I: uname -a Linux codethink01-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 64856 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 182496 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 93744 Apr 10 2022 gzip -rwxr-xr-x 1 root root 18440 Nov 7 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 157864 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jan 20 2022 more -rwsr-xr-x 1 root root 51360 Jan 20 2022 mount -rwxr-xr-x 1 root root 14496 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 8 15:48 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jan 20 2022 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jan 20 2022 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/2331940/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 11); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.9.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pexpect; however: Package python3-pexpect is not installed. pbuilder-satisfydepends-dummy depends on python3-zmq; however: Package python3-zmq is not installed. pbuilder-satisfydepends-dummy depends on openssh-server; however: Package openssh-server is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcbor0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran-10-dev{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libncurses6{a} libnorm1{a} libpgm-5.3-0{a} libpipeline1{a} libpng16-16{a} libprocps8{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsodium23{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libwrap0{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libzmq5{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssh-client{a} openssh-server{a} openssh-sftp-server{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-ase{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pexpect{a} python3-pil{a} python3-pkg-resources{a} python3-ptyprocess{a} python3-pyparsing{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-spglib{a} python3-zmq{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} runit-helper{a} sensible-utils{a} ttf-bitstream-vera{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl libpam-elogind libpam-systemd lynx ncurses-term psmisc python3-olefile python3-tk wget xauth 0 packages upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 74.8 MB of archives. After unpacking 282 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8+deb11u1 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2+deb11u5 [84.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 tzdata all 2021a-1+deb11u10 [286 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2+deb11u2 [93.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3+deb11u1 [273 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3+deb11u1 [123 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3+deb11u1 [69.2 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1+deb11u1 [106 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcbor0 arm64 0.5.0+dfsg-2 [20.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libfido2-1 arm64 1.6.0-2 [50.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 openssh-client arm64 1:8.4p1-5+deb11u2 [895 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7+deb11u4 [629 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 fonts-lyx all 2.3.6-1 [205 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libgfortran-10-dev arm64 10.2.1-6 [388 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 gfortran-10 arm64 10.2.1-6 [8654 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 gfortran arm64 4:10.2.1-1 [1424 B] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3+deb11u1 [100 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2+deb11u5 [128 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1+deb11u1 [393 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u1 [232 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3+deb11u1 [1538 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 liblbfgsb0 arm64 3.0+dfsg.3-9 [24.5 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libnorm1 arm64 1.5.9+dfsg-2 [202 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libpgm-5.3-0 arm64 5.3.128~dfsg-2 [152 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dev arm64 3.9.2-3 [1068 B] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libsodium23 arm64 1.0.18-1 [119 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1+deb11u2 [244 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1+deb11u4 [278 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1+deb11u2 [87.6 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1+deb11u2 [96.7 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libwrap0 arm64 7.6.q-31 [58.7 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libzmq5 arm64 4.3.4-1 [247 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 openssh-sftp-server arm64 1:8.4p1-5+deb11u2 [50.0 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 runit-helper all 2.10.3 [7808 B] Get: 102 http://deb.debian.org/debian bullseye/main arm64 openssh-server arm64 1:8.4p1-5+deb11u2 [361 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 106 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2+deb11u2 [189 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 python3-all-dev arm64 3.9.2-3 [1064 B] Get: 110 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 python3-spglib arm64 1.16.1-1 [99.2 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-2 [17.5 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 python3-cycler all 0.10.0-3 [8084 B] Get: 119 http://deb.debian.org/debian bullseye/main arm64 python3-kiwisolver arm64 1.3.1-1+b1 [51.6 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3+deb11u1 [429 kB] Get: 121 http://deb.debian.org/debian bullseye/main arm64 python3-matplotlib arm64 3.3.4-1 [4109 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 python3-ase all 3.21.1-2 [1331 kB] Get: 123 http://deb.debian.org/debian bullseye/main arm64 python3-nose all 1.3.7-7 [133 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 python3-ptyprocess all 0.7.0-1 [13.6 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 python3-pexpect all 4.8.0-2 [54.9 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 python3-zmq arm64 20.0.0-1+b1 [250 kB] Fetched 74.8 MB in 1s (107 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_arm64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18601 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package tzdata. Preparing to unpack .../04-tzdata_2021a-1+deb11u10_all.deb ... Unpacking tzdata (2021a-1+deb11u10) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../05-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../07-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../08-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../09-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../10-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20908 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../001-libncurses6_6.2+20201114-2+deb11u2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../006-libmagic1_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../009-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../010-libbsd0_0.11.3-1+deb11u1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../011-libedit2_3.1-20191231-2+b1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:arm64. Preparing to unpack .../012-libcbor0_0.5.0+dfsg-2_arm64.deb ... Unpacking libcbor0:arm64 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:arm64. Preparing to unpack .../013-libfido2-1_1.6.0-2_arm64.deb ... Unpacking libfido2-1:arm64 (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../014-openssh-client_1%3a8.4p1-5+deb11u2_arm64.deb ... Unpacking openssh-client (1:8.4p1-5+deb11u2) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../016-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../022-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../026-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../027-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../028-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../029-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../030-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../031-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../032-libxml2_2.9.10+dfsg-6.7+deb11u4_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7+deb11u4) ... 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Setting up runit-helper (2.10.3) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up libsodium23:arm64 (1.0.18-1) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up libpgm-5.3-0:arm64 (5.3.128~dfsg-2) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libcbor0:arm64 (0.5.0+dfsg-2) ... Setting up libnorm1:arm64 (1.5.9+dfsg-2) ... Setting up libmagic1:arm64 (1:5.39-3+deb11u1) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 8 04:17:12 UTC 2025. Universal Time is now: Sat Feb 8 04:17:12 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.2.10-2+deb11u5) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libwrap0:arm64 (7.6.q-31) ... Setting up libncurses6:arm64 (6.2+20201114-2+deb11u2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1+deb11u2) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:arm64 (10.2.1-6) ... Setting up libtiff5:arm64 (4.2.0-1+deb11u4) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libfido2-1:arm64 (1.6.0-2) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:arm64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:arm64 (0.11.3-1+deb11u1) ... Setting up mailcap (3.69) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up libprocps8:arm64 (2:3.3.17-5) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libzmq5:arm64 (4.3.4-1) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1+deb11u2) ... Setting up libedit2:arm64 (3.1-20191231-2+b1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1+deb11u1) ... Setting up gfortran-10 (10.2.1-6) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up openssh-client (1:8.4p1-5+deb11u2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up dh-autoreconf (20) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up openssh-sftp-server (1:8.4p1-5+deb11u2) ... Setting up openssh-server (1:8.4p1-5+deb11u2) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:Ho+g9OqNCkPERZW+SbyLA8lER9XAVr/5pJ9pgjK3tdM root@codethink01-arm64 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:E8bAUEoJKOm0kllVLO9O+z+AA+lG5GSMAkyUuro2mpY root@codethink01-arm64 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:mpLNpXFc90XOzGVr3QW7x9/fCexHXWHgTnV0HvLJCOQ root@codethink01-arm64 (ED25519) invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-zmq (20.0.0-1+b1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-ptyprocess (0.7.0-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up python3-nose (1.3.7-7) ... Setting up libpython3-all-dev:arm64 (3.9.2-3) ... Setting up python3-pexpect (4.8.0-2) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-spglib (1.16.1-1) ... Setting up python3-all-dev (3.9.2-3) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-ase (3.21.1-2) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/amp-0.6.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../amp_0.6.1-1_source.changes dpkg-buildpackage: info: source package amp dpkg-buildpackage: info: source version 0.6.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mattia Rizzolo dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running clean removing '/build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts.linux-arm64-3.9' does not exist -- can't clean it rm -rf amp.egg-info/ find . -name "*.json" -delete find . -name "*-train-log.txt" -delete find . -name "*.pyc" -delete find . -name "*.o" -delete find . -name "*.mod" -delete find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild pybuild:284: make -C amp python3.9 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1/amp' Building for python3.9 (3.9) make -C model make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/model' gfortran -c neuralnetwork.f90 cp neuralnetwork.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/model' make -C descriptor make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' gfortran -c cutoffs.f90 cp cutoffs.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' f2py3.9 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "fmodules" sources f2py options: [] f2py:> /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c creating /tmp/tmpdfbt7wna/src.linux-arm64-3.9 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) Line #99 in model.f90:" type:: image_forces " analyzeline: No name/args pattern found for line. Line #104 in model.f90:" type:: integer_one_d_array " analyzeline: No name/args pattern found for line. Line #109 in model.f90:" type:: embedded_real_one_one_d_array " analyzeline: No name/args pattern found for line. Line #114 in model.f90:" type:: embedded_real_one_two_d_array " analyzeline: No name/args pattern found for line. Line #119 in model.f90:" type:: embedded_integer_one_one_d_array " analyzeline: No name/args pattern found for line. Line #124 in model.f90:" type:: embedded_one_one_two_d_array " analyzeline: No name/args pattern found for line. Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) Line #17 in model/neuralnetwork.f90:" type:: real_two_d_array " analyzeline: No name/args pattern found for line. Line #22 in model/neuralnetwork.f90:" type:: element_parameters " analyzeline: No name/args pattern found for line. Line #29 in model/neuralnetwork.f90:" type:: real_one_d_array " analyzeline: No name/args pattern found for line. Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Constructing wrapper function "check_version"... warning = check_version(version) Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Skipping type unknown_type Skipping type unknown_type Skipping type unknown_type Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90" adding '/tmp/tmpdfbt7wna/src.linux-arm64-3.9/fortranobject.c' to sources. adding '/tmp/tmpdfbt7wna/src.linux-arm64-3.9' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpdfbt7wna/src.linux-arm64-3.9 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpdfbt7wna/src.linux-arm64-3.9 adding '/tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'fmodules' extension compiling C sources C compiler: aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpdfbt7wna/tmp creating /tmp/tmpdfbt7wna/tmp/tmpdfbt7wna creating /tmp/tmpdfbt7wna/tmp/tmpdfbt7wna/src.linux-arm64-3.9 compile options: '-I/tmp/tmpdfbt7wna/src.linux-arm64-3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' aarch64-linux-gnu-gcc: /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c aarch64-linux-gnu-gcc: /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fortranobject.c In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fortranobject.h:13, from /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:16: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fortranobject.h:13, from /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c: In function 'f2py_setup_fingerprint_props': /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:3998:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 3998 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:3999:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 3999 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4000:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4000 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c: In function 'f2py_setup_images_props': /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4054:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4054 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4055:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4055 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4056:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4056 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4057:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4057 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4058:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4058 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4059:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4059 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4060:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4060 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4062:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4062 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c: In function 'f2py_setup_neuralnetwork': /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4106:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4106 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4107:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4107 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4108:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4108 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:4109:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4109 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ At top level: /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.c:144:12: warning: 'f2py_size' defined but not used [-Wunused-function] 144 | static int f2py_size(PyArrayObject* var, ...) | ^~~~~~~~~ compiling Fortran 90 module sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating /tmp/tmpdfbt7wna/descriptor creating /tmp/tmpdfbt7wna/model compile options: '-I/tmp/tmpdfbt7wna/src.linux-arm64-3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-J/tmp/tmpdfbt7wna/ -I/tmp/tmpdfbt7wna/' gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] gfortran:f90: descriptor/cutoffs.f90 gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] compiling Fortran sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops compile options: '-I/tmp/tmpdfbt7wna/src.linux-arm64-3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-J/tmp/tmpdfbt7wna/ -I/tmp/tmpdfbt7wna/' gfortran:f90: descriptor/gaussian.f90 gfortran:f90: descriptor/zernike.f90 gfortran:f90: /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90 /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared /tmp/tmpdfbt7wna/tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodulesmodule.o /tmp/tmpdfbt7wna/tmp/tmpdfbt7wna/src.linux-arm64-3.9/fortranobject.o /tmp/tmpdfbt7wna/model.o /tmp/tmpdfbt7wna/descriptor/cutoffs.o /tmp/tmpdfbt7wna/model/neuralnetwork.o /tmp/tmpdfbt7wna/descriptor/gaussian.o /tmp/tmpdfbt7wna/descriptor/zernike.o /tmp/tmpdfbt7wna/tmp/tmpdfbt7wna/src.linux-arm64-3.9/fmodules-f2pywrappers2.o -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10 -lgfortran -o ./fmodules.cpython-39-aarch64-linux-gnu.so Removing build directory /tmp/tmpdfbt7wna make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp' I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "amp.fmodules" sources f2py options: [] f2py:> build/src.linux-arm64-3.9/amp/fmodulesmodule.c creating build creating build/src.linux-arm64-3.9 creating build/src.linux-arm64-3.9/amp rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'amp/model/neuralnetwork.f90' (format:fix) Line #17 in amp/model/neuralnetwork.f90:" type:: real_two_d_array " analyzeline: No name/args pattern found for line. Line #22 in amp/model/neuralnetwork.f90:" type:: element_parameters " analyzeline: No name/args pattern found for line. Line #29 in amp/model/neuralnetwork.f90:" type:: real_one_d_array " analyzeline: No name/args pattern found for line. Reading file 'amp/descriptor/gaussian.f90' (format:free) Reading file 'amp/descriptor/cutoffs.f90' (format:fix) Reading file 'amp/descriptor/zernike.f90' (format:free) Reading file 'amp/model.f90' (format:fix) Line #99 in amp/model.f90:" type:: image_forces " analyzeline: No name/args pattern found for line. Line #104 in amp/model.f90:" type:: integer_one_d_array " analyzeline: No name/args pattern found for line. Line #109 in amp/model.f90:" type:: embedded_real_one_one_d_array " analyzeline: No name/args pattern found for line. Line #114 in amp/model.f90:" type:: embedded_real_one_two_d_array " analyzeline: No name/args pattern found for line. Line #119 in amp/model.f90:" type:: embedded_integer_one_one_d_array " analyzeline: No name/args pattern found for line. Line #124 in amp/model.f90:" type:: embedded_one_one_two_d_array " analyzeline: No name/args pattern found for line. Post-processing... Block: fmodules Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 get_useparameters: no module cutoffs info used by calculate_g2 Block: calculate_g4 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 get_useparameters: no module cutoffs info used by calculate_g4 Block: calculate_g2_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime get_useparameters: no module cutoffs info used by calculate_g2_prime Block: calculate_g4_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime get_useparameters: no module cutoffs info used by calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:amp/model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: deallocate_variables Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: deallocate_variables Building modules... Building module "fmodules"... Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing wrapper function "check_version"... warning = check_version(version) Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Skipping type unknown_type Skipping type unknown_type Skipping type unknown_type Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fmodules" to file "build/src.linux-arm64-3.9/amp/fmodulesmodule.c" Fortran 90 wrappers are saved to "build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90" adding 'build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fortranobject.c' to sources. adding 'build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp' to include_dirs. creating build/src.linux-arm64-3.9/build creating build/src.linux-arm64-3.9/build/src.linux-arm64-3.9 creating build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp adding 'build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp copying amp/utilities.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp copying amp/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp copying amp/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/regression copying amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/regression creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/VERSION -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'amp.fmodules' extension compiling C sources C compiler: aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-arm64-3.9/build creating build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9 creating build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9/amp creating build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9/build creating build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9/build/src.linux-arm64-3.9 creating build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp compile options: '-Ibuild/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' aarch64-linux-gnu-gcc: build/src.linux-arm64-3.9/amp/fmodulesmodule.c aarch64-linux-gnu-gcc: build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fortranobject.c In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fortranobject.h:13, from build/src.linux-arm64-3.9/amp/fmodulesmodule.c:16: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ build/src.linux-arm64-3.9/amp/fmodulesmodule.c: In function 'f2py_setup_neuralnetwork': build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4008:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4008 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4009:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4009 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4010:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4010 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4011:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4011 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c: In function 'f2py_setup_fingerprint_props': build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4054:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4054 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4055:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4055 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4056:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4056 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c: In function 'f2py_setup_images_props': build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4110:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4110 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4111:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4111 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4112:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4112 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4113:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4113 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4114:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4114 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4115:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4115 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4116:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4116 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ build/src.linux-arm64-3.9/amp/fmodulesmodule.c:4118:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4118 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fortranobject.h:13, from build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ At top level: build/src.linux-arm64-3.9/amp/fmodulesmodule.c:144:12: warning: 'f2py_size' defined but not used [-Wunused-function] 144 | static int f2py_size(PyArrayObject* var, ...) | ^~~~~~~~~ compiling Fortran 90 module sources creating build/temp.linux-arm64-3.9/amp Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating build/temp.linux-arm64-3.9/amp/model creating build/temp.linux-arm64-3.9/amp/descriptor compile options: '-Ibuild/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-Jbuild/temp.linux-arm64-3.9/amp -Ibuild/temp.linux-arm64-3.9/amp' gfortran:f90: amp/model/neuralnetwork.f90 amp/model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] gfortran:f90: amp/descriptor/cutoffs.f90 gfortran:f90: amp/model.f90 amp/model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] compiling Fortran sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops compile options: '-Ibuild/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-Jbuild/temp.linux-arm64-3.9/amp -Ibuild/temp.linux-arm64-3.9/amp' gfortran:f90: amp/descriptor/gaussian.f90 gfortran:f90: amp/descriptor/zernike.f90 gfortran:f90: build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90 build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fmodulesmodule.o build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fortranobject.o build/temp.linux-arm64-3.9/amp/model/neuralnetwork.o build/temp.linux-arm64-3.9/amp/descriptor/cutoffs.o build/temp.linux-arm64-3.9/amp/model.o build/temp.linux-arm64-3.9/amp/descriptor/gaussian.o build/temp.linux-arm64-3.9/amp/descriptor/zernike.o build/temp.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10 -lgfortran -o /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/fmodules.cpython-39-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {build_dir}; {interpreter} /usr/bin/nosetests3 tests" \ dh_auto_test make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/amp-0.6.1/debian/python3-amp /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "amp.fmodules" sources f2py options: [] adding 'build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp/fortranobject.c' to sources. adding 'build/src.linux-arm64-3.9/build/src.linux-arm64-3.9/amp' to include_dirs. adding 'build/src.linux-arm64-3.9/amp/fmodules-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running install_lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9 creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/fmodules.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/VERSION -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/regression copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/regression creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/utilities.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/__main__.py to __main__.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/neuralnetwork.py to neuralnetwork.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/tflow.py to tflow.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/regression/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/analysis.py to analysis.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/bispectrum.py to bispectrum.cpython-39.pyc /usr/lib/python3.9/dist-packages/amp/descriptor/bispectrum.py:398: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/amp/descriptor/bispectrum.py:400: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/cutoffs.py to cutoffs.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/example.py to example.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/gaussian.py to gaussian.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/zernike.py to zernike.cpython-39.pyc /usr/lib/python3.9/dist-packages/amp/descriptor/zernike.py:569: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/amp/descriptor/zernike.py:571: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/analysis.py to analysis.cpython-39.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/utilities.py to utilities.cpython-39.pyc running install_egg_info Writing /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp_atomistics-0.6.1.egg-info running install_clib customize UnixCCompiler I: pybuild pybuild:310: cp -r '/build/reproducible-path/amp-0.6.1/tests' '/build/reproducible-path/amp-0.6.1/debian/python3-amp//usr/lib/python3.9/dist-packages/amp' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_python3 W: dh_python3 fs:113: Paths differ: debian/python3-amp/usr/lib/python3.9/dist-packages/amp/fmodules.cpython-39-aarch64-linux-gnu.so and debian/python3-amp/usr/lib/python3/dist-packages/amp/fmodules.cpython-39-aarch64-linux-gnu.so I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-plotconvergence I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-compress dh_numpy3 dh_fixperms make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-amp-dbgsym' in '../python3-amp-dbgsym_0.6.1-1_arm64.deb'. dpkg-deb: building package 'python3-amp' in '../python3-amp_0.6.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../amp_0.6.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2331940 and its subdirectories I: Current time: Fri Feb 7 16:18:19 -12 2025 I: pbuilder-time-stamp: 1738988299 Sat Jan 6 21:55:22 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Sat Jan 6 21:55:22 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Sat Jan 6 21:56:59 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Sat Jan 6 21:57:00 UTC 2024 I: amp_0.6.1-1_arm64.changes: Format: 1.8 Date: Sun, 28 Oct 2018 16:05:16 +0100 Source: amp Binary: python3-amp python3-amp-dbgsym Architecture: arm64 Version: 0.6.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Mattia Rizzolo Description: python3-amp - Atomistic Machine-learning Package (python 3) Changes: amp (0.6.1-1) unstable; urgency=medium . * Team upload. . [ Muammar El Khatib ] * New upstream release. * Refresh patches. * Move Vcs-* fields to salsa.d.o. . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Mattia Rizzolo ] * Bump debhelper compat level to 11. * Rewrite the amp Makefile's patch to support building for arbitrary python versions. Checksums-Sha1: 541bc54f6b4cddbf2c31bec392924b43f94689ad 8422 amp_0.6.1-1_arm64.buildinfo d356739140e70378e8351c05f6f2926fe48028a4 355016 python3-amp-dbgsym_0.6.1-1_arm64.deb 5663eb9f4f78c63ad00bd5eddd8bf448198417fa 226096 python3-amp_0.6.1-1_arm64.deb Checksums-Sha256: 5892dc7050291c573c0f497f5ffe4728e9f5f31254adbc308a500629056803fc 8422 amp_0.6.1-1_arm64.buildinfo b6dd0a72330e7eb942afc05df77feacf19157e7ca81248f157881ff1e7235b25 355016 python3-amp-dbgsym_0.6.1-1_arm64.deb 8a7e14f452f25b6877396c207aa43d9901e5aa604e68a51886675b714f04735d 226096 python3-amp_0.6.1-1_arm64.deb Files: 9d730df5f959d74a74d23ca0e637b212 8422 science optional amp_0.6.1-1_arm64.buildinfo a1f2d0d8094ea6d29faafe9c2eb3c477 355016 debug optional python3-amp-dbgsym_0.6.1-1_arm64.deb 0ac6d0b7ec271449002080d8341e3f4a 226096 science optional python3-amp_0.6.1-1_arm64.deb Sat Jan 6 21:57:00 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.mO1zWMZo/amp_0.6.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.mO1zWMZo/amp_0.6.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.mO1zWMZo/amp_0.6.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.mO1zWMZo/b1/amp_0.6.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.mO1zWMZo/b2/amp_0.6.1-1_arm64.changes ## close_archive (total time: 0.000s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 29.595s) 10.841s 926 calls readelf 9.717s 110 calls diff 5.576s 165 calls objdump 3.133s 2 calls objcopy 0.238s 18 calls xz 0.084s 22 calls strings 0.002s 1 call cmp 0.002s 1 call cmp (external) 0.002s 20 calls cmp (internal) ## compare_files (cumulative) (total time: 140.637s) 25.386s 1 call abc.DotChangesFile 25.374s 2 calls abc.DebFile 25.310s 4 calls abc.XzFile 25.013s 2 calls abc.DebDataTarFile 24.589s 2 calls abc.ElfFile 13.961s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.750s 29 calls diffoscope.comparators.elf.ElfSection 0.137s 2 calls abc.TarFile 0.059s 2 calls diffoscope.comparators.elf.ElfStringSection 0.030s 2 calls abc.Md5sumsFile 0.017s 1 call abc.TextFile 0.011s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 0.380s) 0.239s 18 calls diffoscope.comparators.xz.XzContainer 0.066s 20 calls diffoscope.comparators.tar.TarContainer 0.052s 80 calls diffoscope.comparators.deb.DebTarContainer 0.023s 22 calls diffoscope.comparators.deb.DebContainer ## diff (total time: 0.141s) 0.141s 232 calls linediff ## has_same_content_as (total time: 0.006s) 0.002s 2 calls abc.DebDataTarFile 0.001s 6 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.ElfFile 0.000s 2 calls abc.DebFile 0.000s 2 calls abc.TarFile 0.000s 29 calls diffoscope.comparators.elf.ElfSection 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 2 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 26.531s) 26.530s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## output (total time: 0.825s) 0.787s 1 call html 0.021s 1 call text 0.017s 1 call json ## recognizes (total time: 0.473s) 0.219s 1716 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.128s 768 calls diffoscope.comparators.utils.archive.ArchiveMember 0.069s 638 calls diffoscope.comparators.elf.ElfSection 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile 0.019s 176 calls diffoscope.comparators.elf.ElfCodeSection 0.014s 216 calls diffoscope.comparators.debian.DebControlMember 0.004s 44 calls diffoscope.comparators.elf.ElfStringSection 0.001s 22 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.195s) 0.195s 64 calls specialize Sat Jan 6 21:57:27 UTC 2024 E: amp failed to build reproducibly in bullseye on arm64. Sat Jan 6 21:57:27 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/arm64/amp_0.6.1-1.diffoscope.html Sat Jan 6 21:57:36 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Jan 6 21:57:36 UTC 2024 I: Submitting 12K b1/amp_0.6.1-1_arm64.buildinfo.asc Sat Jan 6 21:57:37 UTC 2024 I: Submitting 12K b2/amp_0.6.1-1_arm64.buildinfo.asc Sat Jan 6 21:57:37 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jan 6 21:57:37 UTC 2024 I: Done submitting .buildinfo files. Sat Jan 6 21:57:37 UTC 2024 I: Removing signed amp_0.6.1-1_arm64.buildinfo.asc files: removed './b1/amp_0.6.1-1_arm64.buildinfo.asc' removed './b2/amp_0.6.1-1_arm64.buildinfo.asc'