Thu Jul 29 00:30:34 UTC 2021 I: starting to build baitfisher/bullseye/arm64 on jenkins on '2021-07-29 00:30' Thu Jul 29 00:30:34 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_25/40353/console.log Thu Jul 29 00:30:34 UTC 2021 I: Downloading source for bullseye/baitfisher=1.2.7+git20190123.241d060+dfsg-1 --2021-07-29 00:30:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/baitfisher/baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2200 (2.1K) Saving to: ‘baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc’ 0K .. 100% 177M=0s 2021-07-29 00:30:34 (177 MB/s) - ‘baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc’ saved [2200/2200] Thu Jul 29 00:30:34 UTC 2021 I: baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: baitfisher Binary: baitfisher Architecture: any Version: 1.2.7+git20190123.241d060+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/cmayer/BaitFisher-package Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/baitfisher Vcs-Git: https://salsa.debian.org/med-team/baitfisher.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libtclap-dev Package-List: baitfisher deb science optional arch=any Checksums-Sha1: 646d83d67de6abf1355ea8e15a2181644c20005b 3455320 baitfisher_1.2.7+git20190123.241d060+dfsg.orig.tar.xz 010695b227b3abc5950394fff82f9c968ba0be61 4804 baitfisher_1.2.7+git20190123.241d060+dfsg-1.debian.tar.xz Checksums-Sha256: 10dbbe0ed5882b346a6a4b734dceec6ccd984f201344346127ead7bbb5b31a2e 3455320 baitfisher_1.2.7+git20190123.241d060+dfsg.orig.tar.xz 80499b506fd037164e84a5fe2ba4e8063ef3f97a4e08c7cdfe650ffacfea21b6 4804 baitfisher_1.2.7+git20190123.241d060+dfsg-1.debian.tar.xz Files: 183f26859e7d3a00b5706a983df83e39 3455320 baitfisher_1.2.7+git20190123.241d060+dfsg.orig.tar.xz b8200de9cadbccb1cccf0eac62314473 4804 baitfisher_1.2.7+git20190123.241d060+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl86m9EUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFMRA//Z4hwveJzqD/MasQh2CL/PaYNH4MN TddrD2W4hANgoOqMDYJW9h4y+Y9/6Prya3bcI30AceFK4rlTpUrVHbLmyhX+s1cm hZa2LNwT5oo4xc++RSznnBcu0+zKs4F/0xd3qNycaE4e1KQ+yWV8CSA5SC9IzOhh V04/nFER8nSY8/dfbrn1TgSyaJuAFeq6XNErddmxhEU9cCu7n49c15jRl9rj43Zz lQ64AnaR514Q2F3qWRo6C9cbPLITJkK/C1VRWeT6Ubpd7828Fl7ifmz3nK+EPXwr iSAicA4Qlz4eOAEscl5lnbt4ouMJ2Q32ATPoiHpfhETnBFXgXXaa5D3Nnyzd+alm 2ktS0diCfwdBYgkDZTdlhFmoH//az1pw75xQgYR4giJ+1nzuJ+4SBK1NK4/5sNYp 3lTqAyAZUI0qVWcOxy9o7Rjj7Y2+kt76VWR4xmsUVmDSwyMlJPCLadSN4KkVRPEN bUeA0Q2e1nHnfWwBKxRs6F6uFbYZZfItBhT2TgfpATUFvYsDLmQQ/AHG/0MmGRku TL9CQzhNil826MliZFYirPieL/Mw+S1CfqvF1H9pbZoqFO5E49qi22X9dKZT62gL ClaylhRgpEgD21lwcTYcCmohPcGpZP8U9DeZ9rdvxQMVjGJcaKAGbVnn6R1h4H7M Q37d7m5+6dHYgz0= =r0m8 -----END PGP SIGNATURE----- Thu Jul 29 00:30:34 UTC 2021 I: Checking whether the package is not for us Thu Jul 29 00:30:34 UTC 2021 I: Starting 1st build on remote node codethink15-arm64.debian.net. Thu Jul 29 00:30:34 UTC 2021 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Thu Jul 29 00:31:42 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 30 18:53:36 -12 2022 I: pbuilder-time-stamp: 1661928816 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc] I: copying [./baitfisher_1.2.7+git20190123.241d060+dfsg.orig.tar.xz] I: copying [./baitfisher_1.2.7+git20190123.241d060+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.zG0k8skH/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 17 03:01:37 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc dpkg-source: info: extracting baitfisher in baitfisher-1.2.7+git20190123.241d060+dfsg dpkg-source: info: unpacking baitfisher_1.2.7+git20190123.241d060+dfsg.orig.tar.xz dpkg-source: info: unpacking baitfisher_1.2.7+git20190123.241d060+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_example.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25785/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25785' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.AoQ8R6OmKP/pbuilderrc_OBPO --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.AoQ8R6OmKP/b1 --logfile b1/build.log baitfisher_1.2.7+git20190123.241d060+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 30 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/25785/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, libtclap-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtclap-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 68.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 help2man arm64 1.48.1 [190 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libtclap-dev arm64 1.2.3-1 [143 kB] Fetched 18.3 MB in 0s (44.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../05-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../08-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../11-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/baitfisher-1.2.7+git20190123.241d060+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../baitfisher_1.2.7+git20190123.241d060+dfsg-1_source.changes dpkg-buildpackage: info: source package baitfisher dpkg-buildpackage: info: source version 1.2.7+git20190123.241d060+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j8 clean make[1]: Entering directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' rm -f *.o rm -f BaitFisher-v1.2.8 rm -f BaitFilter-v1.0.6 make[1]: Leaving directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher-helper.cpp -o bait-fisher-helper.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher.cpp -o bait-fisher.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Csequence_cluster_and_center_sequence.cpp -o Csequence_cluster_and_center_sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mydir-unix.cpp -o mydir-unix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-filter.cpp -o bait-filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c global-types-and-parameters.cpp -o global-types-and-parameters.o g++ -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-filter.o global-types-and-parameters.o -o BaitFilter-v1.0.6 g++ -I . -O3 -g -O2 -fdebug-prefix-map=/build/baitfisher-1.2.7+git20190123.241d060+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-fisher-helper.o bait-fisher.o Csequence_cluster_and_center_sequence.o mydir-unix.o -o BaitFisher-v1.2.8 make[1]: Leaving directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' cp BaitFilter-v* debian/baitfisher/usr/bin/BaitFilter cp BaitFisher-v* debian/baitfisher/usr/bin/BaitFisher dh_install for sh in `grep -Rl '#!/usr/bin/bash' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/bash?#!/bin/bash?' ${sh} ; \ done make[1]: Leaving directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' help2man --no-discard-stderr -o BaitFilter.1 ./BaitFilter-v* help2man --no-discard-stderr -o BaitFisher.1 ./BaitFisher-v* dh_installman make[1]: Leaving directory '/build/baitfisher-1.2.7+git20190123.241d060+dfsg' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'baitfisher' in '../baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.deb'. dpkg-deb: building package 'baitfisher-dbgsym' in '../baitfisher-dbgsym_1.2.7+git20190123.241d060+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25785 and its subdirectories I: Current time: Tue Aug 30 18:54:40 -12 2022 I: pbuilder-time-stamp: 1661928880 Thu Jul 29 00:31:42 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Thu Jul 29 00:31:42 UTC 2021 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Thu Jul 29 00:34:24 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Thu Jul 29 00:34:25 UTC 2021 I: baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.changes: Format: 1.8 Date: Mon, 17 Aug 2020 19:53:53 +0530 Source: baitfisher Binary: baitfisher baitfisher-dbgsym Architecture: arm64 Version: 1.2.7+git20190123.241d060+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: baitfisher - software package for designing hybrid enrichment probes Changes: baitfisher (1.2.7+git20190123.241d060+dfsg-1) unstable; urgency=medium . * Team Upload. [ Steffen Möller ] * Added ref to conda * d/u/metadata: yamllint . [ Nilesh Patra ] * Add autopkgtests * Fix lintian * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/control (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. Checksums-Sha1: 463aabea91f825eb4c5d72ff968d0e5819195e57 1800956 baitfisher-dbgsym_1.2.7+git20190123.241d060+dfsg-1_arm64.deb 3074934b6497b7d00b8dc4db118b6e547f1de3bf 5144 baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo ba317b7c3a10bb69df79cc938b2cf5fff4716d65 171120 baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.deb Checksums-Sha256: e7e0a6b6fc15885a35187b80da0d597f28b1b7b980ae8a7c1dc5445135a98a48 1800956 baitfisher-dbgsym_1.2.7+git20190123.241d060+dfsg-1_arm64.deb cd3f87e01bdc21eeb0f0110f9c4fdea1366099d0eeb52fb8f45393eed1198f6f 5144 baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo 1080121fb81b1a4e0d9ae25b9a6d061d415919363eed41a637da52b908790bff 171120 baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.deb Files: 4369a31df82034864da750d465f36e4c 1800956 debug optional baitfisher-dbgsym_1.2.7+git20190123.241d060+dfsg-1_arm64.deb 08ba705389d52e20fd7ab4bf3bbe85b1 5144 science optional baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo 6638bc16519fd5e4194a1d2f367867d3 171120 science optional baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.deb Thu Jul 29 00:34:26 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.AoQ8R6OmKP/baitfisher_1.2.7+git20190123.241d060+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.AoQ8R6OmKP/baitfisher_1.2.7+git20190123.241d060+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.AoQ8R6OmKP/baitfisher_1.2.7+git20190123.241d060+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.AoQ8R6OmKP/b1/baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.AoQ8R6OmKP/b2/baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.264s) 0.264s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.035s) 0.035s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 29 00:34:27 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 29 00:34:27 UTC 2021 I: baitfisher from bullseye built successfully and reproducibly on arm64. Thu Jul 29 00:34:28 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 29 00:34:28 UTC 2021 I: Submitting 8.0K b1/baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo.asc Thu Jul 29 00:34:29 UTC 2021 I: Submitting 8.0K b2/baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo.asc Thu Jul 29 00:34:30 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 29 00:34:30 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 29 00:34:30 UTC 2021 I: Removing signed baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo.asc files: removed './b1/baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo.asc' removed './b2/baitfisher_1.2.7+git20190123.241d060+dfsg-1_arm64.buildinfo.asc'