Sun Jul 25 07:46:38 UTC 2021 I: starting to build bamtools/bullseye/arm64 on jenkins on '2021-07-25 07:46' Sun Jul 25 07:46:38 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_19/20040/console.log Sun Jul 25 07:46:38 UTC 2021 I: Downloading source for bullseye/bamtools=2.5.1+dfsg-9 --2021-07-25 07:46:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/bamtools/bamtools_2.5.1+dfsg-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2388 (2.3K) Saving to: ‘bamtools_2.5.1+dfsg-9.dsc’ 0K .. 100% 153M=0s 2021-07-25 07:46:38 (153 MB/s) - ‘bamtools_2.5.1+dfsg-9.dsc’ saved [2388/2388] Sun Jul 25 07:46:38 UTC 2021 I: bamtools_2.5.1+dfsg-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bamtools Binary: bamtools, libbamtools-dev, libbamtools2.5.1, libbamtools-doc Architecture: any all Version: 2.5.1+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille , Kevin Murray , Dominique Belhachemi Homepage: https://github.com/pezmaster31/bamtools/wiki Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/bamtools Vcs-Git: https://salsa.debian.org/med-team/bamtools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen Package-List: bamtools deb science optional arch=any libbamtools-dev deb libdevel optional arch=any libbamtools-doc deb doc optional arch=all libbamtools2.5.1 deb libs optional arch=any Checksums-Sha1: 0274c3250223060da999b74bb3804aad7f62da7e 196644 bamtools_2.5.1+dfsg.orig.tar.gz adbc2defafd41498f4703a89b5604c169739f215 11848 bamtools_2.5.1+dfsg-9.debian.tar.xz Checksums-Sha256: 034873ddc9cbe557af9f081893083c361aff55e079448b22d856a667c50110ef 196644 bamtools_2.5.1+dfsg.orig.tar.gz 09aa1cf457ec64c4a7be912d1692d52e2a0a23a9c03569229ef20e6d89f9d0b6 11848 bamtools_2.5.1+dfsg-9.debian.tar.xz Files: 012e7ec1a1c9bc44b62794ba9c855de0 196644 bamtools_2.5.1+dfsg.orig.tar.gz aeaa4c253ae8060308b3df8bf0788b2b 11848 bamtools_2.5.1+dfsg-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmB4mRIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGCMBAAi95gvSr5LSi4fIbnTHsvkKidL8DxWt2+ Ny0eNNMNE8rw0HnN4yoQAzOlkMJSqkh/+QVM0Gt5NnjHCLCrfXHvRlINyjwe/gI3 i3xwzpds6j7MlqRCLubOad+1t0RZCybqbz/ljALKCUe7AU83LrPMKL2z9GdwMdnP eEUM0/XRbv/g0ThV3WTonuZu5YOIhrY8+MZ2qLaKYM7agf/dnbzE/QmLfmvpPP7Y owPd2dAt39Ga1nuAMmqotVmUrBnd+3gusSX4W8pVvRvzPU420V7vncONJcbSS82w Nbp9xfHii844xAqwMgeKPDysN8t5vcNca0KAoE4evKxJgXKUm6yJkDEXKeFouU/F q79C1EPrXu5f78VsI9b6X30yfErR594rxv5huqDV/5xQD1Dog07Y/eA6PE9FB4oN BEwE8LDayfY1lW4gPKQuI92lUeLKckBZLy5Qx/wZ3Cr4b25M2QlunpJ08fiVJDg2 JNlHGfGRhj4UP1V9aiTvp5cIyWHIyWgxb6P4uhl6mWYCqdD566OgNp1tEd6h54PV iaqMD6JhvX8bjS9wnrR5GHZAbPgoeZL1aZ+mpXcU0lXbAMyGZM1gmNHK9B5/e4fv 6mzmyMlDnW0h1P6sDWBdk8rHZASY6mcJWngH4uadU+Id7oRJSmZov4EbQ4y0q+lX k5v8Zd1rK3I= =b58F -----END PGP SIGNATURE----- Sun Jul 25 07:46:38 UTC 2021 I: Checking whether the package is not for us Sun Jul 25 07:46:38 UTC 2021 I: Starting 1st build on remote node codethink13-arm64.debian.net. Sun Jul 25 07:46:38 UTC 2021 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Sun Jul 25 07:50:39 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Aug 27 02:09:41 -12 2022 I: pbuilder-time-stamp: 1661609381 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bamtools_2.5.1+dfsg-9.dsc] I: copying [./bamtools_2.5.1+dfsg.orig.tar.gz] I: copying [./bamtools_2.5.1+dfsg-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.MDuoHbxI/trustedkeys.kbx': General error gpgv: Signature made Thu Apr 15 07:50:42 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bamtools_2.5.1+dfsg-9.dsc dpkg-source: info: extracting bamtools in bamtools-2.5.1+dfsg dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz dpkg-source: info: unpacking bamtools_2.5.1+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doxygen-tweak dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0006-Doxygen-reproducibility dpkg-source: info: applying 0008_Cmake_Test.patch dpkg-source: info: applying spelling dpkg-source: info: applying tiddit.patch dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20177/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20177' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.SxtCeL8g7B/pbuilderrc_UTjU --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.SxtCeL8g7B/b1 --logfile b1/build.log bamtools_2.5.1+dfsg-9.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 25 03:49 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/20177/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libjsoncpp-dev; however: Package libjsoncpp-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libclang-cpp11{a} libclang1-11{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjsoncpp-dev{a} libjsoncpp24{a} libldap-2.4-2{a} libllvm11{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 63.9 MB of archives. After unpacking 283 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 d-shlibs all 0.98 [17.9 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libclang-cpp11 arm64 1:11.0.1-2 [7957 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libclang1-11 arm64 1:11.0.1-2 [4553 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 doxygen arm64 1.9.1-1 [3891 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 help2man arm64 1.48.1 [190 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp-dev arm64 1.9.4-4 [25.4 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Fetched 63.9 MB in 1s (48.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../05-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../06-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../07-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../08-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../09-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../10-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../11-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../12-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../14-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../20-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../21-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../23-libarchive13_3.4.3-2+b1_arm64.deb ... Unpacking libarchive13:arm64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../24-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../25-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../26-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../27-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../28-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../29-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../30-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../31-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../32-libcurl4_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl4:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../33-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:arm64. Preparing to unpack .../34-libjsoncpp24_1.9.4-4_arm64.deb ... Unpacking libjsoncpp24:arm64 (1.9.4-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../35-librhash0_1.4.1-2_arm64.deb ... Unpacking librhash0:arm64 (1.4.1-2) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../36-libuv1_1.40.0-2_arm64.deb ... Unpacking libuv1:arm64 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../37-cmake_3.18.4-2_arm64.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../38-d-shlibs_0.98_all.deb ... Unpacking d-shlibs (0.98) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../39-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../40-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../41-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../42-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../43-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../44-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../45-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../46-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../47-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../48-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../49-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../50-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../51-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../52-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../53-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../54-libedit2_3.1-20191231-2+b1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20191231-2+b1) ... Selecting previously unselected package libz3-4:arm64. Preparing to unpack .../55-libz3-4_4.8.10-1_arm64.deb ... Unpacking libz3-4:arm64 (4.8.10-1) ... Selecting previously unselected package libllvm11:arm64. Preparing to unpack .../56-libllvm11_1%3a11.0.1-2_arm64.deb ... Unpacking libllvm11:arm64 (1:11.0.1-2) ... Selecting previously unselected package libclang-cpp11. Preparing to unpack .../57-libclang-cpp11_1%3a11.0.1-2_arm64.deb ... Unpacking libclang-cpp11 (1:11.0.1-2) ... Selecting previously unselected package libclang1-11. Preparing to unpack .../58-libclang1-11_1%3a11.0.1-2_arm64.deb ... Unpacking libclang1-11 (1:11.0.1-2) ... Selecting previously unselected package doxygen. Preparing to unpack .../59-doxygen_1.9.1-1_arm64.deb ... Unpacking doxygen (1.9.1-1) ... Selecting previously unselected package help2man. Preparing to unpack .../60-help2man_1.48.1_arm64.deb ... Unpacking help2man (1.48.1) ... Selecting previously unselected package libjsoncpp-dev:arm64. Preparing to unpack .../61-libjsoncpp-dev_1.9.4-4_arm64.deb ... Unpacking libjsoncpp-dev:arm64 (1.9.4-4) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../62-zlib1g-dev_1%3a1.2.11.dfsg-2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:arm64 (4.8.10-1) ... Setting up libuv1:arm64 (1.40.0-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up d-shlibs (0.98) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:arm64 (1.9.4-4) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:arm64 (1.4.1-2) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libprocps8:arm64 (2:3.3.17-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libjsoncpp-dev:arm64 (1.9.4-4) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:arm64 (3.4.3-2+b1) ... Setting up libedit2:arm64 (3.1-20191231-2+b1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.1) ... Setting up libllvm11:arm64 (1:11.0.1-2) ... Setting up libclang1-11 (1:11.0.1-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:arm64 (7.74.0-1.3+b1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp11 (1:11.0.1-2) ... Setting up dh-autoreconf (20) ... Setting up doxygen (1.9.1-1) ... Setting up cmake (3.18.4-2) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/bamtools-2.5.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bamtools_2.5.1+dfsg-9_source.changes dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.1+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The CXX compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/bamtools-2.5.1+dfsg' doxygen -u docs/Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 300 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'SHOW_DIRECTORIES' at line 500 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'COLS_IN_ALPHA_INDEX' at line 801 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'HTML_ALIGN_MEMBERS' at line 862 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'USE_INLINE_TREES' at line 1032 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'XML_SCHEMA' at line 1244 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'XML_DTD' at line 1250 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'PERL_PATH' at line 1411 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag 'MSCGEN_PATH' at line 1433 of file 'docs/Doxyfile' has become obsolete. This tag has been removed. Configuration file 'docs/Doxyfile' updated. doxygen docs/Doxyfile warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/bam Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/index Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/io Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/sam Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/utils Searching INPUT for files to process... Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/algorithms Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/bam Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/index Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/io Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/sam Searching for files in directory /build/bamtools-2.5.1+dfsg/src/api/internal/utils Reading and parsing tag files Parsing files Preprocessing /build/bamtools-2.5.1+dfsg/src/api/algorithms/Sort.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/algorithms/Sort.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/api_global.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/api_global.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamAlgorithms.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamAlgorithms.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamAux.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamAux.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamConstants.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamConstants.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamIndex.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamIndex.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamMultiReader.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamMultiReader.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamReader.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamReader.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamReader.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamReader.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/BamWriter.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/BamWriter.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/IBamIODevice.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/IBamIODevice.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamConstants.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamConstants.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamHeader.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamHeader.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamProgram.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamProgram.h... Preprocessing /build/bamtools-2.5.1+d/build/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp:25: warning: Documentation for undefined enum 'MergeOrder' found. /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:188: warning: documented symbol 'bool BamTools::AddTag' was not declared or defined. /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:304: warning: documented symbol 'template< typename T > bool BamTools::AddTag' was not declared or defined. /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:369: warning: documented symbol 'template< typename T > bool BamTools::EditTag' was not declared or defined. /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:395: warning: documented symbol 'template< typename T > bool BamTools::EditTag' was not declared or defined. /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:418: warning: documented symbol 'template< typename T > bool BamTools::GetTag' was not declared or defined. /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:543: warning: documented symbol 'template< typename T > bool BamTools::GetTag' was not declared or defined. fsg/src/api/SamProgramChain.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamProgramChain.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamProgramChain.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamReadGroup.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamReadGroup.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamSequence.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamSequence.h... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp... Preprocessing /build/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.h... Parsing file /build/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file api_global.h... Generating code for file BamAlgorithms.h... Generating code for file BamAlignment.h... Generating code for file BamAux.h... Generating code for file BamConstants.h... Generating code for file BamIndex.h... Generating code for file BamMultiReader.h... Generating code for file BamReader.h... Generating code for file BamWriter.h... Generating code for file IBamIODevice.h... Generating code for file SamConstants.h... Generating code for file SamHeader.h... Generating code for file SamProgram.h... Generating code for file SamProgramChain.h... Generating code for file SamReadGroup.h... Generating code for file SamReadGroupDictionary.h... Generating code for file SamSequence.h... Generating code for file SamSequenceDictionary.h... Generating code for file Sort.h... Generating file documentation... Generating docs for file api_global.h... Generating docs for file BamAlgorithms.h... Generating docs for file BamAlignment.cpp... Generating docs for file BamAlignment.h... Generating docs for file BamAux.h... Generating docs for file BamConstants.h... Generating docs for file BamIndex.h... Generating docs for file BamMultiReader.cpp... Generating docs for file BamMultiReader.h... Generating docs for file BamReader.cpp... Generating docs for file BamReader.h... Generating docs for file BamWriter.cpp... Generating docs for file BamWriter.h... Generating docs for file IBamIODevice.h... Generating docs for file SamConstants.h... Generating docs for file SamHeader.cpp... Generating docs for file SamHeader.h... Generating docs for file SamProgram.cpp... Generating docs for file SamProgram.h... Generating docs for file SamProgramChain.cpp... Generating docs for file SamProgramChain.h... Generating docs for file SamReadGroup.cpp... Generating docs for file SamReadGroup.h... Generating docs for file SamReadGroupDictionary.cpp... Generating docs for file SamReadGroupDictionary.h... Generating docs for file SamSequence.cpp... Generating docs for file SamSequence.h... Generating docs for file SamSequenceDictionary.cpp... Generating docs for file SamSequenceDictionary.h... Generating docs for file Sort.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace BamTools Generating docs for compound BamTools::BamAlignment... Generating docs for compound BamTools::CigarOp... Generating docs for compound BamTools::RefData... Generating docs for compound BamTools::BamRegion... Generating docs for compound BamTools::CustomHeaderTag... Generating docs for compound BamTools::BamIndex... Generating docs for compound BamTools::BamMultiReader... Generating docs for compound BamTools::BamReader... Generating docs for compound BamTools::BamWriter... Generating docs for compound BamTools::IBamIODevice... Generating docs for compound BamTools::SamHeader... Generating docs for compound BamTools::SamProgram... Generating docs for compound BamTools::SamProgramChain... Generating docs for compound BamTools::SamReadGroup... Generating docs for compound BamTools::SamReadGroupDictionary... Generating docs for compound BamTools::SamSequence... Generating docs for compound BamTools::SamSequenceDictionary... Generating docs for namespace BamTools::Algorithms Generating docs for compound BamTools::Algorithms::Sort... Generating docs for nested compound BamTools::Algorithms::Sort::ByName... Generating docs for nested compound BamTools::Algorithms::Sort::ByPosition... Generating docs for nested compound BamTools::Algorithms::Sort::ByTag... Generating docs for nested compound BamTools::Algorithms::Sort::Unsorted... Generating docs for namespace BamTools::Constants Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 1173/65536 hits=4513 misses=1214 finished... mv docs/Doxyfile.bak docs/Doxyfile make[1]: Leaving directory '/build/bamtools-2.5.1+dfsg' dh_auto_build -Nlibbamtools-doc cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/bamtools-2.5.1+dfsg -B/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools_static.dir/build.make src/api/CMakeFiles/BamTools_static.dir/depend make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-2.5.1+dfsg /build/bamtools-2.5.1+dfsg/src/api /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-2.5.1+dfsg /build/bamtools-2.5.1+dfsg/src/api /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools.dir/depend.internal". Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools.dir/depend.internal". Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/DependInfo.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/depend.internal". Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/depend.internal". Scanning dependencies of target BamTools Scanning dependencies of target BamTools_static make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/api/CMakeFiles/BamTools_static.dir/build.make src/api/CMakeFiles/BamTools_static.dir/build make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp [ 2%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp [ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o [ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp [ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o [ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp [ 7%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamReader.cpp [ 8%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp [ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp [ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp [ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp [ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp [ 13%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamReader.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamReader.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamReader.cpp [ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp [ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp [ 16%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamWriter.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamWriter.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp [ 17%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp [ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp [ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp [ 20%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamHeader.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamHeader.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp [ 21%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamProgram.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamProgram.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp [ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp [ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp [ 24%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp [ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp [ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp [ 27%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamReadGroup.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamReadGroup.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp [ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp [ 29%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamReadGroupDictionary.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamReadGroupDictionary.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp [ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp [ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp [ 32%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamSequence.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamSequence.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp [ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp [ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp [ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp [ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp [ 37%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamSequenceDictionary.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamSequenceDictionary.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp [ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp [ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp [ 40%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamHeader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamHeader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp [ 41%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 43%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'void BamTools::Internal::HostAddress::Clear()': /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct BamTools::Internal::IPv6Address'; use assignment or value-initialization instead [-Wclass-memaccess] 273 | memset(&m_ip6Address, 0, sizeof(IPv6Address)); | ^ In file included from /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: 'struct BamTools::Internal::IPv6Address' declared here 31 | struct IPv6Address | ^~~~~~~~~~~ [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp [ 46%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 48%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp [ 50%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp [ 51%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp [ 53%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp [ 54%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp [ 55%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp [ 56%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp [ 57%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp [ 58%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp [ 59%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp [ 60%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp [ 61%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp [ 62%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp [ 63%] Linking CXX shared library libbamtools.so cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz [ 64%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp [ 65%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so [ 66%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-2.5.1+dfsg /build/bamtools-2.5.1+dfsg/src/utils /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/depend.internal". Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/depend.internal". Scanning dependencies of target BamTools-utils make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /build/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp [ 68%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'void BamTools::Internal::HostAddress::Clear()': /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct BamTools::Internal::IPv6Address'; use assignment or value-initialization instead [-Wclass-memaccess] 273 | memset(&m_ip6Address, 0, sizeof(IPv6Address)); | ^ In file included from /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: 'struct BamTools::Internal::IPv6Address' declared here 31 | struct IPv6Address | ^~~~~~~~~~~ [ 69%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp [ 70%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 71%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 72%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp [ 73%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp [ 74%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 75%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 76%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp [ 77%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /build/bamtools-2.5.1+dfsg/src/utils/bamtools_options.cpp [ 78%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp [ 79%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp [ 80%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o -c /build/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp [ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /build/bamtools-2.5.1+dfsg/src/utils/bamtools_pileup_engine.cpp [ 82%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /build/bamtools-2.5.1+dfsg/src/utils/bamtools_utilities.cpp [ 83%] Linking CXX static library libbamtools-utils.a cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake [ 84%] Linking CXX static library libbamtools.a cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/cmake -P CMakeFiles/BamTools_static.dir/cmake_clean_target.cmake cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools_static.dir/link.txt --verbose=1 /usr/bin/ar qc libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o /usr/bin/ar qc libbamtools.a CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o CMakeFiles/BamTools_static.dir/BamReader.cpp.o CMakeFiles/BamTools_static.dir/BamWriter.cpp.o CMakeFiles/BamTools_static.dir/SamHeader.cpp.o CMakeFiles/BamTools_static.dir/SamProgram.cpp.o CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o CMakeFiles/BamTools_static.dir/SamReadGroup.cpp.o CMakeFiles/BamTools_static.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools_static.dir/SamSequence.cpp.o CMakeFiles/BamTools_static.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o /usr/bin/ranlib libbamtools-utils.a make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target BamTools-utils make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-2.5.1+dfsg /build/bamtools-2.5.1+dfsg/src/toolkit /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= /usr/bin/ranlib libbamtools.a Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/depend.internal". Dependee "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/depend.internal". Scanning dependencies of target bamtools_cmd make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [ 85%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o [ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o [ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_convert.cpp make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_count.cpp cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_coverage.cpp [ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_index.cpp [ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o [ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_header.cpp [ 90%] Built target BamTools_static cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_filter.cpp [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_merge.cpp [ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_random.cpp [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_resolve.cpp [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp [ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_sort.cpp [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp [ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-2.5.1+dfsg/src -I/build/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit -I/build/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /build/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp [100%] Linking CXX executable bamtools cd /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1 make[3]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/bamtools-2.5.1+dfsg' cd obj-* && ln -s src/toolkit/ bin dh_auto_test --arch cd obj-aarch64-linux-gnu && make -j8 test ARGS\+=-j8 make[2]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j8 Test project /build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu Start 1: bamtools_help Start 2: bamtools_stats 1/2 Test #1: bamtools_help .................... Passed 0.02 sec 2/2 Test #2: bamtools_stats ................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.03 sec make[2]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/bamtools-2.5.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install -Nlibbamtools-doc cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/bamtools-2.5.1+dfsg -B/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/bamtools-1.pc -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.so.2.5.1 -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.so -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.a -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /build/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools -- Set runtime path of "/build/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to "" make[1]: Leaving directory '/build/bamtools-2.5.1+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/bamtools-2.5.1+dfsg' dh_install --arch d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbamtools-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libbamtools2.5.1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.a debian/libbamtools-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.so debian/libbamtools-dev/usr/lib/aarch64-linux-gnu mv /build/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libbamtools.so.2.5.1 debian/libbamtools2.5.1/usr/lib/aarch64-linux-gnu PKGDEV=libbamtools-dev PKGSHL=libbamtools2.5.1 install -d -m 755 debian/libbamtools-dev/usr/include mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include install -d -m 755 debian/libbamtools-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/aarch64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/bamtools-2.5.1+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/bamtools-2.5.1+dfsg' dh_install --indep rm -f debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js ln -s /usr/share/javascript/jquery/jquery.js debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js make[1]: Leaving directory '/build/bamtools-2.5.1+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libbamtools-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-9_arm64.deb'. dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-9_arm64.deb'. dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-9_arm64.deb'. dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in '../libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_arm64.deb'. dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.1+dfsg-9_arm64.deb'. dpkg-deb: building package 'libbamtools-doc' in '../libbamtools-doc_2.5.1+dfsg-9_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bamtools_2.5.1+dfsg-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20177 and its subdirectories I: Current time: Sat Aug 27 02:13:38 -12 2022 I: pbuilder-time-stamp: 1661609618 Sun Jul 25 07:50:40 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink14-arm64.debian.net. Sun Jul 25 07:50:40 UTC 2021 I: Preparing to do remote build '2' on codethink14-arm64.debian.net. Sun Jul 25 07:54:34 UTC 2021 I: Deleting $TMPDIR on codethink14-arm64.debian.net. Sun Jul 25 07:54:35 UTC 2021 I: bamtools_2.5.1+dfsg-9_arm64.changes: Format: 1.8 Date: Thu, 15 Apr 2021 21:28:36 +0200 Source: bamtools Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools-doc libbamtools2.5.1 libbamtools2.5.1-dbgsym Architecture: arm64 all Version: 2.5.1+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools-doc - docs for dynamic library for manipulating BAM (genome alignment) libbamtools2.5.1 - dynamic library for manipulating BAM (genome alignment) files Closes: 987023 Changes: bamtools (2.5.1+dfsg-9) unstable; urgency=medium . [ Steffen Möller ] * Update metadata - indent and ref to guix . [ Andreas Tille ] * Extend means to prevent timeouts from amd64 also to armhf and s390x Closes: #987023 Checksums-Sha1: b2f5b315d04eece5ec44fb4bb3119ef284805352 3050728 bamtools-dbgsym_2.5.1+dfsg-9_arm64.deb c7859af8b9542b049aed7b89211a1837abc6d6d1 7486 bamtools_2.5.1+dfsg-9_arm64.buildinfo 5b6f2d2208ae948f0634a866c41eb9f263937c07 156912 bamtools_2.5.1+dfsg-9_arm64.deb 7c2f9652a29db189501e49d145a7feded5f5606a 197040 libbamtools-dev_2.5.1+dfsg-9_arm64.deb 46abbd47ec79a21c40eff540389b662a82932b81 162472 libbamtools-doc_2.5.1+dfsg-9_all.deb 9cd42a6acd9e391f2c48d167391480c9b9f23289 2234176 libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_arm64.deb e1d742835d7d8cc4248d76075d9602989e5e9072 142340 libbamtools2.5.1_2.5.1+dfsg-9_arm64.deb Checksums-Sha256: b3b5bf99182ea886573c0ae6a2cfd22445319a9cde647f64c8deed380b67da44 3050728 bamtools-dbgsym_2.5.1+dfsg-9_arm64.deb 410eef73dc0eea8803de47f0470495ee0e93c06593e0a247bf0c7dc7d222965b 7486 bamtools_2.5.1+dfsg-9_arm64.buildinfo a21e4f97a4e2da8f014730d4d3f1bc765e718b4a7708eaf4da173c4b1b00df69 156912 bamtools_2.5.1+dfsg-9_arm64.deb 8d997461f1850f8126de03dc13157b6422043831abbd0cdd26048e780bb7078c 197040 libbamtools-dev_2.5.1+dfsg-9_arm64.deb 564283bb1072b36294ee792239ce13cb1e7c320ee512eaec9eff0e96f9912709 162472 libbamtools-doc_2.5.1+dfsg-9_all.deb 5a1cc4831751d29960f0f74e50d0a7a406ecc5794c503bfc8ccd0d491dd1eda5 2234176 libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_arm64.deb 6488b0e45d26d72daa972d9d4fd3437e0258331087b3756e154737bf7fd6e925 142340 libbamtools2.5.1_2.5.1+dfsg-9_arm64.deb Files: 681b16fa117104d80030f22f95420000 3050728 debug optional bamtools-dbgsym_2.5.1+dfsg-9_arm64.deb a7d9d954ab03d6143b48fa93a2cfef1a 7486 science optional bamtools_2.5.1+dfsg-9_arm64.buildinfo 21457577d5a7b6706c60a3f8a6f627fe 156912 science optional bamtools_2.5.1+dfsg-9_arm64.deb c8f0170dbb310b91a6768ddd67a0ad11 197040 libdevel optional libbamtools-dev_2.5.1+dfsg-9_arm64.deb 0da807584769800983ac06ba81296603 162472 doc optional libbamtools-doc_2.5.1+dfsg-9_all.deb b27219cdcad8a39c7fdf94f119bbfbe3 2234176 debug optional libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_arm64.deb fab2d76c77e53fadd5f0f04bc959ff13 142340 libs optional libbamtools2.5.1_2.5.1+dfsg-9_arm64.deb Sun Jul 25 07:54:36 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.SxtCeL8g7B/bamtools_2.5.1+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.SxtCeL8g7B/bamtools_2.5.1+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.SxtCeL8g7B/bamtools_2.5.1+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.SxtCeL8g7B/b1/bamtools_2.5.1+dfsg-9_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.SxtCeL8g7B/b2/bamtools_2.5.1+dfsg-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.310s) 0.310s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.077s) 0.077s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Jul 25 07:54:38 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sun Jul 25 07:54:38 UTC 2021 I: bamtools from bullseye built successfully and reproducibly on arm64. Sun Jul 25 07:54:39 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Jul 25 07:54:39 UTC 2021 I: Submitting 12K b1/bamtools_2.5.1+dfsg-9_arm64.buildinfo.asc Sun Jul 25 07:54:40 UTC 2021 I: Submitting 12K b2/bamtools_2.5.1+dfsg-9_arm64.buildinfo.asc Sun Jul 25 07:54:42 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jul 25 07:54:42 UTC 2021 I: Done submitting .buildinfo files. Sun Jul 25 07:54:42 UTC 2021 I: Removing signed bamtools_2.5.1+dfsg-9_arm64.buildinfo.asc files: removed './b1/bamtools_2.5.1+dfsg-9_arm64.buildinfo.asc' removed './b2/bamtools_2.5.1+dfsg-9_arm64.buildinfo.asc'