Tue Aug 10 21:32:50 UTC 2021 I: starting to build kaptive/bullseye/arm64 on jenkins on '2021-08-10 21:32' Tue Aug 10 21:32:50 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_17/19129/console.log Tue Aug 10 21:32:50 UTC 2021 I: Downloading source for bullseye/kaptive=0.7.3-3 --2021-08-10 21:32:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/k/kaptive/kaptive_0.7.3-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2125 (2.1K) Saving to: ‘kaptive_0.7.3-3.dsc’ 0K .. 100% 77.0M=0s 2021-08-10 21:32:50 (77.0 MB/s) - ‘kaptive_0.7.3-3.dsc’ saved [2125/2125] Tue Aug 10 21:32:50 UTC 2021 I: kaptive_0.7.3-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kaptive Binary: kaptive, kaptive-data, kaptive-example Architecture: all Version: 0.7.3-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/katholt/Kaptive Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/kaptive Vcs-Git: https://salsa.debian.org/med-team/kaptive.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-biopython Package-List: kaptive deb science optional arch=all kaptive-data deb science optional arch=all kaptive-example deb science optional arch=all Checksums-Sha1: 63c67d837a9e48c1b693dad817aa440f0b5eccd8 12094818 kaptive_0.7.3.orig.tar.gz c42b98af14a8e0ac1851d2e25ffae76f151388e1 6528 kaptive_0.7.3-3.debian.tar.xz Checksums-Sha256: 11e20585c54b79aa838664958064aa5b9b8e0f848edf0abd34763b0221a57f7d 12094818 kaptive_0.7.3.orig.tar.gz b7cd9a952ea5a577a6e7411a4e41d93c0a8020543052ad7ae08c697f77d99577 6528 kaptive_0.7.3-3.debian.tar.xz Files: 7a8ed48553d4eb792744ed90fb04a1d7 12094818 kaptive_0.7.3.orig.tar.gz a6ea69c2c76208313adf9f290210cede 6528 kaptive_0.7.3-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAmB6A3sACgkQHnCRsfFK ZKKcThAAmZGtNhUjSB1lM0CviqIyV4u7LHNFNXfUyOGeP9et9uLXsILUbWByEFVb FGoHSLRuTxrJvMEtsJQ6470HdA+DCM7FekTj8WvS5mv5odUnE3Ntm9your/AvOxx Bi5sVKZW412/Rjm8zPgoXTlqcuAqMylNO2QbjEfv7RGQr0rBFPqxa/SpIgaQ8G9G l/HL2GS+JED2EUjWXgSVv8r3OKGwqidFmImrlk3efSBfdcrkdlPfgKqPZlow37GS 89M9EszmA3kb/wAXSzSYKSRHD1jUsgoy/XGbY+uzt7AwEX3buJu+czzn2vKX4Wkm 6U9/1jhRZS3My0H6D/OdYw6D82C0usRWxVQV/3ddMb2qIXiyjSKDGSfGFo9CJG1V KCJTgazfaYPHerwoeWZe06V8mILoG1egqhw9i6CSoE6WSaf+Hzmc6XFv3SYOcb5W gcMUChRM0aWNGx3oFFqXCWMQTzmk+AidPYVYD8dcnihHFJDzkazbNo3nHpRJC8We Lg/tOlfC/8PBRo+UEDRoLwTUUW3GGvE4VRsdj6InzBaRuUuKb4BEzELqKr4pu5j2 8kYUWdbSXJdvDORVjhRrMErzZdqI7avpMQBBnX/ccdSOYUoN5by7umv71ntBBfN0 whg3STHwbjIJB6rWUFrK0R2dShAAQihHLT6VQci3vajTdZqDYmI= =UCQI -----END PGP SIGNATURE----- Tue Aug 10 21:32:50 UTC 2021 I: Checking whether the package is not for us Tue Aug 10 21:32:50 UTC 2021 I: Starting 1st build on remote node codethink13-arm64.debian.net. Tue Aug 10 21:32:50 UTC 2021 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Tue Aug 10 21:35:26 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 12 15:55:58 -12 2022 I: pbuilder-time-stamp: 1663041358 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kaptive_0.7.3-3.dsc] I: copying [./kaptive_0.7.3.orig.tar.gz] I: copying [./kaptive_0.7.3-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.C5srWn3d/trustedkeys.kbx': General error gpgv: Signature made Fri Apr 16 09:36:59 2021 -12 gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kaptive_0.7.3-3.dsc dpkg-source: info: extracting kaptive in kaptive-0.7.3 dpkg-source: info: unpacking kaptive_0.7.3.orig.tar.gz dpkg-source: info: unpacking kaptive_0.7.3-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying blastdb_4 dpkg-source: info: applying extend_bad_versions I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25898/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25898' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Am90DIy1Vs/pbuilderrc_mlbh --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Am90DIy1Vs/b1 --logfile b1/build.log kaptive_0.7.3-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 2021 more -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 11 05:44 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/25898/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-biopython{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-renderpm wget 0 packages upgraded, 76 newly installed, 0 to remove and 0 not upgraded. Need to get 34.1 MB of archives. After unpacking 138 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 70 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab-accel arm64 3.5.59-2 [38.6 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3 [428 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab all 3.5.59-2 [575 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 python3-biopython arm64 1.78+dfsg-4 [1389 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 34.1 MB in 1s (38.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up file (1:5.39-3) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:arm64 (4.2.0-1) ... Setting up libwebpmux3:arm64 (0.6.1-2.1) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.3) ... Setting up python3-reportlab-accel:arm64 (3.5.59-2) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/kaptive-0.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kaptive_0.7.3-3_source.changes dpkg-buildpackage: info: source package kaptive dpkg-buildpackage: info: source version 0.7.3-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/kaptive-0.7.3' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/kaptive-0.7.3/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf Kaptive.egg-info make[1]: Leaving directory '/build/kaptive-0.7.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_scripts creating build creating build/scripts-3.9 copying and adjusting kaptive.py -> build/scripts-3.9 changing mode of build/scripts-3.9/kaptive.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/kaptive-0.7.3/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/kaptive-0.7.3/debian/tmp running install running build running build_scripts running install_egg_info running egg_info creating Kaptive.egg-info writing Kaptive.egg-info/PKG-INFO writing dependency_links to Kaptive.egg-info/dependency_links.txt writing requirements to Kaptive.egg-info/requires.txt writing top-level names to Kaptive.egg-info/top_level.txt writing manifest file 'Kaptive.egg-info/SOURCES.txt' reading manifest file 'Kaptive.egg-info/SOURCES.txt' writing manifest file 'Kaptive.egg-info/SOURCES.txt' Copying Kaptive.egg-info to /build/kaptive-0.7.3/debian/tmp/usr/lib/python3.9/dist-packages/Kaptive-0.7.3.egg-info Skipping SOURCES.txt running install_scripts creating /build/kaptive-0.7.3/debian/tmp/usr/bin copying build/scripts-3.9/kaptive.py -> /build/kaptive-0.7.3/debian/tmp/usr/bin changing mode of /build/kaptive-0.7.3/debian/tmp/usr/bin/kaptive.py to 755 dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/kaptive-0.7.3' dh_installman --language=C make[1]: Leaving directory '/build/kaptive-0.7.3' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild debian/rules override_dh_missing make[1]: Entering directory '/build/kaptive-0.7.3' find debian/tmp -type d -name Kaptive-0.7.3.egg-info | xargs rm -rf dh_missing make[1]: Leaving directory '/build/kaptive-0.7.3' dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'kaptive-data' in '../kaptive-data_0.7.3-3_all.deb'. dpkg-deb: building package 'kaptive-example' in '../kaptive-example_0.7.3-3_all.deb'. dpkg-deb: building package 'kaptive' in '../kaptive_0.7.3-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kaptive_0.7.3-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25898 and its subdirectories I: Current time: Mon Sep 12 15:58:24 -12 2022 I: pbuilder-time-stamp: 1663041504 Tue Aug 10 21:35:27 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Tue Aug 10 21:35:27 UTC 2021 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Tue Aug 10 21:37:22 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Tue Aug 10 21:37:23 UTC 2021 I: kaptive_0.7.3-3_arm64.changes: Format: 1.8 Date: Fri, 16 Apr 2021 17:33:52 -0400 Source: kaptive Binary: kaptive kaptive-data kaptive-example Architecture: all Version: 0.7.3-3 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team Changed-By: Aaron M. Ucko Description: kaptive - obtain information about K and O types for Klebsiella genome asse kaptive-data - reference data for kaptive for Klebsiella genome assemblies kaptive-example - example data for kaptive for Klebsiella genome assemblies Closes: 986592 Changes: kaptive (0.7.3-3) unstable; urgency=high . * Team upload. * d/p/extend_bad_versions: Account for crashes with error output too. If a relevant tblastn version failed with error text starting with "terminate called ", prepend the usual "tblastn crashed!" message. (Closes: #986592.) Checksums-Sha1: 84b185d9d7191aea63bb2b59900e6cdf938f2271 1943536 kaptive-data_0.7.3-3_all.deb 420a22535baecef8793e71e92423f363baf75f88 6473664 kaptive-example_0.7.3-3_all.deb 43b00851efda719a4d658e6012ca7f446648dbda 32596 kaptive_0.7.3-3_all.deb 8eac03dca04953cdfb16b4698a3196967a93c190 6451 kaptive_0.7.3-3_arm64.buildinfo Checksums-Sha256: 149a6b71178ff04fe631ee4c57be06f9e007966bf25c92090903982ffb90a480 1943536 kaptive-data_0.7.3-3_all.deb 004d385a637a6a73bce5dfc523f11098bd74981aeebbe055ff4880a4becd785e 6473664 kaptive-example_0.7.3-3_all.deb 579beb9a52f3a0d2636d217e47a467f4331c59106bf742dc669d7ef31b57fac3 32596 kaptive_0.7.3-3_all.deb 7d5b2a29ae85cce9b3f6992ade051eeeb74736cfa14c50d33cd2f23d699dab36 6451 kaptive_0.7.3-3_arm64.buildinfo Files: f8461859786c2aea8bc6861ad0994bdd 1943536 science optional kaptive-data_0.7.3-3_all.deb 1c70ad30742176a87f30eaa47b94cf0e 6473664 science optional kaptive-example_0.7.3-3_all.deb c48154dfee2a4910f67cd4dba46c1673 32596 science optional kaptive_0.7.3-3_all.deb e6ed22fa925df88dcd147f289de60e13 6451 science optional kaptive_0.7.3-3_arm64.buildinfo Tue Aug 10 21:37:33 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Am90DIy1Vs/kaptive_0.7.3-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Am90DIy1Vs/kaptive_0.7.3-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Am90DIy1Vs/kaptive_0.7.3-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Am90DIy1Vs/b1/kaptive_0.7.3-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.Am90DIy1Vs/b2/kaptive_0.7.3-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 5.813s) 5.813s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.780s) 0.779s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 10 21:39:39 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 10 21:39:39 UTC 2021 I: kaptive from bullseye built successfully and reproducibly on arm64. Tue Aug 10 21:39:41 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 10 21:39:41 UTC 2021 I: Submitting 8.0K b1/kaptive_0.7.3-3_arm64.buildinfo.asc Tue Aug 10 21:39:43 UTC 2021 I: Submitting 8.0K b2/kaptive_0.7.3-3_arm64.buildinfo.asc Tue Aug 10 21:39:44 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 10 21:39:44 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 10 21:39:44 UTC 2021 I: Removing signed kaptive_0.7.3-3_arm64.buildinfo.asc files: removed './b1/kaptive_0.7.3-3_arm64.buildinfo.asc' removed './b2/kaptive_0.7.3-3_arm64.buildinfo.asc'