Thu Jul 29 01:14:31 UTC 2021 I: starting to build libpll/bullseye/arm64 on jenkins on '2021-07-29 01:14' Thu Jul 29 01:14:31 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_14/24367/console.log Thu Jul 29 01:14:31 UTC 2021 I: Downloading source for bullseye/libpll=0.3.2-4 --2021-07-29 01:14:31-- http://cdn-fastly.deb.debian.org/debian/pool/main/libp/libpll/libpll_0.3.2-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2078 (2.0K) Saving to: ‘libpll_0.3.2-4.dsc’ 0K .. 100% 157M=0s 2021-07-29 01:14:31 (157 MB/s) - ‘libpll_0.3.2-4.dsc’ saved [2078/2078] Thu Jul 29 01:14:31 UTC 2021 I: libpll_0.3.2-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libpll Binary: libpll0, libpll-dev Architecture: any Version: 0.3.2-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.libpll.org/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libpll Vcs-Git: https://salsa.debian.org/med-team/libpll.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, python3-all Build-Depends: debhelper-compat (= 13), d-shlibs, bison, flex, autoconf-archive Package-List: libpll-dev deb libdevel optional arch=any libpll0 deb libs optional arch=any Checksums-Sha1: fac5db76dbc6a9582d9342f078ae7af925830ea8 2237460 libpll_0.3.2.orig.tar.gz 99a374733eb7c7708ca6e7f979b40a86598275db 238044 libpll_0.3.2-4.debian.tar.xz Checksums-Sha256: 45107d59d87be921c522478bb3688beee60dc79154e0b4a183af01122c597132 2237460 libpll_0.3.2.orig.tar.gz ffa69576c10ff7ef80645a923211bfd733fe9f37753611e2960957e94322aeb6 238044 libpll_0.3.2-4.debian.tar.xz Files: ee62af658af8aaf9c68af75e7714e055 2237460 libpll_0.3.2.orig.tar.gz b883c903d5e0963ebbb669a726fe5c3b 238044 libpll_0.3.2-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/Tt3YRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtExaA//ZaOpEqIw7Jb5NNrNDMKmAZGk1lpiR7hW 8ykRu1OTX9Uj/KiRNwWSoSMEeoTzTeYz/XyyVMB0Bx0f5yeg1PCezs3oVIAqGRFV OzGHbY+54wKgrxW2lJgF0kEuvJ8tB+GVNyXLi04+N5Qjf/iL4a1ho36j0HbYixkj bj8Jd5wpXbzfn8ZkXkIp1bZWzjtujnVgEziCVLGFjjHid07LmF4DKVU4kgKnRqUc LqP1vYOayQndsTixUvA03j488yU43Z8s/fKEa/YtRJgwxtToYbBMrBBLeZKORGaW ePXsek1ZYZ4zFl/ztQ4ow9nVLKP1r1CM1t7JWsXgIuE2o9w07Ce8RhmaAQYuv+JH COH9BsE6aKcsLmwqCPmGkNf7Oi8wettj0lRZ61r6rHBpsvICfY/wJuMOSENedMEr jZYbH+dwgK0HRqzP+owmyviucU7Z0QOkF8yGLtQjdZbwFhsdD0oP+YqJBURTDVRw kkLoWtvfrc5DTdhczNOzWGykk0tIXQyzpRGvDbCAkT/KgR5kWMr9kSEXfzL3X0XT eYeIFUpu5VQtegx4/9zysiNcfx6SQa9qMPCBfdRxZga8MOzyeyiPEal39mg8k+eQ K1RRkEXM++5Dm2xT6PbhkrTn00qN/Mv021+Z1VqyhM5cw3lFZEVajQ5OQ8Knauaz RCuHe1IkPp4= =d2lS -----END PGP SIGNATURE----- Thu Jul 29 01:14:31 UTC 2021 I: Checking whether the package is not for us Thu Jul 29 01:14:31 UTC 2021 I: Starting 1st build on remote node codethink12-arm64.debian.net. Thu Jul 29 01:14:31 UTC 2021 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Thu Jul 29 01:16:06 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 28 13:14:34 -12 2021 I: pbuilder-time-stamp: 1627521274 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpll_0.3.2-4.dsc] I: copying [./libpll_0.3.2.orig.tar.gz] I: copying [./libpll_0.3.2-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.UQPHxJlU/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 11 06:16:22 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpll_0.3.2-4.dsc dpkg-source: info: extracting libpll in libpll-0.3.2 dpkg-source: info: unpacking libpll_0.3.2.orig.tar.gz dpkg-source: info: unpacking libpll_0.3.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix-parallel-build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11100/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11100' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.R72drxjBya/pbuilderrc_dcUJ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.R72drxjBya/b1 --logfile b1/build.log libpll_0.3.2-4.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 26 21:25 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/11100/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, bison, flex, autoconf-archive dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libfl-dev libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 20.2 MB of archives. After unpacking 77.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 autoconf-archive all 20190106-2.1 [746 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 flex arm64 2.6.4-8 [431 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 bison arm64 2:3.7.5+dfsg-1 [1084 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 d-shlibs all 0.98 [17.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Fetched 20.2 MB in 0s (52.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../05-autoconf-archive_20190106-2.1_all.deb ... Unpacking autoconf-archive (20190106-2.1) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package flex. Preparing to unpack .../08-flex_2.6.4-8_arm64.deb ... Unpacking flex (2.6.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../09-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../10-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../11-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../12-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1+nmu1_all.deb ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpll_0.3.2-4_source.changes dpkg-buildpackage: info: source package libpll dpkg-buildpackage: info: source version 0.3.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: installing 'm4/libtool.m4' from '/usr/share/aclocal/libtool.m4' aclocal: installing 'm4/ltoptions.m4' from '/usr/share/aclocal/ltoptions.m4' aclocal: installing 'm4/ltsugar.m4' from '/usr/share/aclocal/ltsugar.m4' aclocal: installing 'm4/ltversion.m4' from '/usr/share/aclocal/ltversion.m4' aclocal: installing 'm4/lt~obsolete.m4' from '/usr/share/aclocal/lt~obsolete.m4' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:17: installing './compile' configure.ac:11: installing './config.guess' configure.ac:11: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' configure.ac: installing './ylwrap' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libpll-0.3.2' dh_auto_configure -- --disable-sse --disable-avx --disable-avx2 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-sse --disable-avx --disable-avx2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking for bison... bison -y checking for exp in -lm... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking x86intrin.h usability... no checking x86intrin.h presence... no checking for x86intrin.h... no checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working alloca.h... yes checking for alloca... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for asprintf... yes checking for memcpy... yes checking for memset... yes checking for posix_memalign... yes checking for ps2pdf... no configure: WARNING: *** ps2pdf is required to build a PDF version of the manual checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands libpll 0.3.2 Target: linux-gnu aarch64 Compiler: gcc CFLAGS: -g -Wdate-time -D_FORTIFY_SOURCE=2 LIBS: -lm -Wl,-z,relro -Wl,-z,now Continue with 'make' command make[1]: Leaving directory '/build/libpll-0.3.2' dh_auto_build make -j8 make[1]: Entering directory '/build/libpll-0.3.2' make all-recursive make[2]: Entering directory '/build/libpll-0.3.2' Making all in src make[3]: Entering directory '/build/libpll-0.3.2/src' /bin/bash ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` /bin/bash ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` /build/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 159 | %error-verbose | ^~~~~~~~~~~~~~ /build/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 159 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/libpll-0.3.2/src/parse_utree.y:161.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 161 | %destructor { pll_utree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_utree.y:162.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 162 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_utree.y:163.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 163 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_utree.y:164.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 164 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 102 | %error-verbose | ^~~~~~~~~~~~~~ /build/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 102 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/libpll-0.3.2/src/parse_rtree.y:104.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 104 | %destructor { pll_rtree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_rtree.y:105.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 105 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_rtree.y:106.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 106 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_rtree.y:107.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 107 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] /build/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating parse_rtree.h updating parse_utree.h make all-am make[4]: Entering directory '/build/libpll-0.3.2/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c -fPIC -DPIC -o .libs/libpll_la-pll.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -fPIC -DPIC -o .libs/libpll_la-maps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -fPIC -DPIC -o .libs/libpll_la-models.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -fPIC -DPIC -o .libs/libpll_la-gamma.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -fPIC -DPIC -o .libs/libpll_la-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c -fPIC -DPIC -o .libs/libpll_la-output.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -fPIC -DPIC -o .libs/libpll_la-likelihood.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -o libpll_la-maps.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -o libpll_la-list.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -o libpll_la-fasta.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c -o libpll_la-output.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -o libpll_la-likelihood.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-rtree.lo `test -f 'rtree.c' || echo './'`rtree.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-derivatives.lo `test -f 'derivatives.c' || echo './'`derivatives.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -o libpll_la-gamma.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-partials.lo `test -f 'partials.c' || echo './'`partials.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c -fPIC -DPIC -o .libs/libpll_la-rtree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c -fPIC -DPIC -o .libs/libpll_la-utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c -o libpll_la-derivatives.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -fPIC -DPIC -o .libs/libpll_la-compress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -o libpll_la-models.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c -fPIC -DPIC -o .libs/libpll_la-utree_moves.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -o libpll_la-partials.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_svg.lo `test -f 'utree_svg.c' || echo './'`utree_svg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c -o libpll_la-rtree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c -fPIC -DPIC -o .libs/libpll_la-utree_svg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -o libpll_la-compress.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c -o libpll_la-utree_moves.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile 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-DPIC -o .libs/libpll_la-core_derivatives.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c -o libpll_la-utree_svg.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_partials.lo `test -f 'core_partials.c' || echo './'`core_partials.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_pmatrix.lo `test -f 'core_pmatrix.c' || echo './'`core_pmatrix.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_likelihood.lo `test -f 'core_likelihood.c' || echo './'`core_likelihood.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -fPIC -DPIC -o .libs/libpll_la-core_partials.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c -o libpll_la-parsimony.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c -fPIC -DPIC -o .libs/libpll_la-core_pmatrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -fPIC -DPIC -o .libs/libpll_la-core_likelihood.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_utree.lo `test 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<<<"lex_utree"` -o lex.yy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -fPIC -DPIC -o .libs/libpll_la-parse_rtree.o /bin/bash ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_rtree"` -o lex.yy.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fast_parsimony.lo `test -f 'fast_parsimony.c' || echo './'`fast_parsimony.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -o libpll_la-core_partials.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-stepwise.lo `test -f 'stepwise.c' || echo './'`stepwise.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -fPIC -DPIC -o .libs/libpll_la-fast_parsimony.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -fPIC -DPIC -o .libs/libpll_la-stepwise.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -fPIC -DPIC -o .libs/libpll_la-random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -fPIC -DPIC -o .libs/libpll_la-phylip.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-hardware.lo `test -f 'hardware.c' || echo './'`hardware.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -o libpll_la-random.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -fPIC -DPIC -o .libs/libpll_la-hardware.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -o libpll_la-fast_parsimony.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -o libpll_la-stepwise.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -o libpll_la-phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -o libpll_la-parse_utree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -o libpll_la-hardware.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -fPIC -DPIC -o .libs/libpll_la-lex_utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -o libpll_la-parse_rtree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/aarch64-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o -lm -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0") libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so") libtool: link: ar cr .libs/libpll.a libpll_la-fasta.o libpll_la-gamma.o libpll_la-likelihood.o libpll_la-list.o libpll_la-maps.o libpll_la-models.o libpll_la-pll.o libpll_la-output.o libpll_la-utree.o libpll_la-rtree.o libpll_la-derivatives.o libpll_la-partials.o libpll_la-compress.o libpll_la-utree_moves.o libpll_la-utree_svg.o libpll_la-parsimony.o libpll_la-core_derivatives.o libpll_la-core_partials.o libpll_la-core_pmatrix.o libpll_la-core_likelihood.o libpll_la-parse_utree.o libpll_la-parse_rtree.o libpll_la-lex_utree.o libpll_la-lex_rtree.o libpll_la-fast_parsimony.o libpll_la-stepwise.o libpll_la-random.o libpll_la-phylip.o libpll_la-hardware.o libtool: link: ranlib .libs/libpll.a libtool: link: ( cd ".libs" && rm -f "libpll.la" && ln -s "../libpll.la" "libpll.la" ) make[4]: Leaving directory '/build/libpll-0.3.2/src' make[3]: Leaving directory '/build/libpll-0.3.2/src' Making all in man make[3]: Entering directory '/build/libpll-0.3.2/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libpll-0.3.2/man' Making all in examples make[3]: Entering directory '/build/libpll-0.3.2/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libpll-0.3.2/examples' make[3]: Entering directory '/build/libpll-0.3.2' make[3]: Leaving directory '/build/libpll-0.3.2' make[2]: Leaving directory '/build/libpll-0.3.2' make[1]: Leaving directory '/build/libpll-0.3.2' dh_auto_test make -j8 check VERBOSE=1 make[1]: Entering directory '/build/libpll-0.3.2' Making check in src make[2]: Entering directory '/build/libpll-0.3.2/src' make check-am make[3]: Entering directory '/build/libpll-0.3.2/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/libpll-0.3.2/src' make[2]: Leaving directory '/build/libpll-0.3.2/src' Making check in man make[2]: Entering directory '/build/libpll-0.3.2/man' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/libpll-0.3.2/man' Making check in examples make[2]: Entering directory '/build/libpll-0.3.2/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/libpll-0.3.2/examples' make[2]: Entering directory '/build/libpll-0.3.2' make[2]: Leaving directory '/build/libpll-0.3.2' make[1]: Leaving directory '/build/libpll-0.3.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/libpll-0.3.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libpll-0.3.2' Making install in src make[2]: Entering directory '/build/libpll-0.3.2/src' make install-am make[3]: Entering directory '/build/libpll-0.3.2/src' make[4]: Entering directory '/build/libpll-0.3.2/src' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libpll.la '/build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so.0.0.0 libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; }) libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; }) libtool: install: /usr/bin/install -c .libs/libpll.lai /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.la libtool: install: /usr/bin/install -c .libs/libpll.a /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a libtool: install: chmod 644 /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a libtool: install: ranlib /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/include/libpll' /usr/bin/install -c -m 644 pll.h '/build/libpll-0.3.2/debian/tmp/usr/include/libpll' make[4]: Leaving directory '/build/libpll-0.3.2/src' make[3]: Leaving directory '/build/libpll-0.3.2/src' make[2]: Leaving directory '/build/libpll-0.3.2/src' Making install in man make[2]: Entering directory '/build/libpll-0.3.2/man' make[3]: Entering directory '/build/libpll-0.3.2/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 libpll.3 '/build/libpll-0.3.2/debian/tmp/usr/share/man/man3' make[3]: Leaving directory '/build/libpll-0.3.2/man' make[2]: Leaving directory '/build/libpll-0.3.2/man' Making install in examples make[2]: Entering directory '/build/libpll-0.3.2/examples' make[3]: Entering directory '/build/libpll-0.3.2/examples' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/install -c -m 644 heterotachy/heterotachy.c heterotachy/Makefile heterotachy/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/install -c -m 644 lg4/lg4.c lg4/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/install -c -m 644 lg4/data/example.fas lg4/data/example.tree '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/install -c -m 644 load-utree/load-utree.c load-utree/Makefile load-utree/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/install -c -m 644 newick-fasta-rooted/newick-fasta-rooted.c newick-fasta-rooted/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/install -c -m 644 newick-fasta-unrooted/newick-fasta-unrooted.c newick-fasta-unrooted/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/install -c -m 644 newick-phylip-unrooted/newick-phylip-unrooted.c newick-phylip-unrooted/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/install -c -m 644 newton/newton.c newton/Makefile newton/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/install -c -m 644 parsimony/npr-pars.c parsimony/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/install -c -m 644 partial-traversal/partial.c partial-traversal/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/install -c -m 644 protein-list/protein-list.c protein-list/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/install -c -m 644 rooted/rooted.c rooted/Makefile rooted/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/install -c -m 644 rooted-tacg/rooted-tacg.c rooted-tacg/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/install -c -m 644 stepwise/stepwise.c stepwise/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' /usr/bin/install -c -m 644 unrooted/unrooted.c unrooted/Makefile unrooted/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' make[3]: Leaving directory '/build/libpll-0.3.2/examples' make[2]: Leaving directory '/build/libpll-0.3.2/examples' make[2]: Entering directory '/build/libpll-0.3.2' make[3]: Entering directory '/build/libpll-0.3.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/libpll-0.3.2' make[2]: Leaving directory '/build/libpll-0.3.2' make[1]: Leaving directory '/build/libpll-0.3.2' debian/rules override_dh_install make[1]: Entering directory '/build/libpll-0.3.2' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/ld64-1-dev// \ --override s/ld-kfreebsd-x86-64-1-dev// \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpll-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libpll0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a debian/libpll-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so debian/libpll-dev/usr/lib/aarch64-linux-gnu mv /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so.0 debian/libpll0/usr/lib/aarch64-linux-gnu mv /build/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so.0.0.0 debian/libpll0/usr/lib/aarch64-linux-gnu PKGDEV=libpll-dev PKGSHL=libpll0 install -d -m 755 debian/libpll-dev/usr/include mv debian/tmp/usr/include/libpll debian/libpll-dev/usr/include make[1]: Leaving directory '/build/libpll-0.3.2' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/libpll-0.3.2' sed -i 's/conjuction/conjunction/' man/libpll.3 dh_installman make[1]: Leaving directory '/build/libpll-0.3.2' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/libpll-0.3.2' find . -type f \( -name "*.la" -o -name "libpll.3" \) | xargs rm -rf find . -name examples | xargs rm -rf dh_missing make[1]: Leaving directory '/build/libpll-0.3.2' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libpll-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libpll0' in '../libpll0_0.3.2-4_arm64.deb'. dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-4_arm64.deb'. dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libpll_0.3.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11100 and its subdirectories I: Current time: Wed Jul 28 13:16:05 -12 2021 I: pbuilder-time-stamp: 1627521365 Thu Jul 29 01:16:06 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Thu Jul 29 01:16:06 UTC 2021 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Thu Jul 29 01:18:40 UTC 2021 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Thu Jul 29 01:18:41 UTC 2021 I: libpll_0.3.2-4_arm64.changes: Format: 1.8 Date: Fri, 11 Dec 2020 19:05:53 +0100 Source: libpll Binary: libpll-dev libpll0 libpll0-dbgsym Architecture: arm64 Version: 0.3.2-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libpll-dev - Phylogenetic Likelihood Library (development) libpll0 - Phylogenetic Likelihood Library Closes: 976906 Changes: libpll (0.3.2-4) unstable; urgency=medium . * Fix parallel build (Thanks a lot to Frédéric Bonnard) Closes: #976906 * Standards-Version: 4.5.1 (routine-update) * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 47d801f8a0b1bafee36cfcb5955e499f7dc9569c 134884 libpll-dev_0.3.2-4_arm64.deb 956200df6a81ed479329b6e7c1039754a21bfe4a 228004 libpll0-dbgsym_0.3.2-4_arm64.deb 112ccf62378d52e90b7f9586b71628d1e90f021e 114016 libpll0_0.3.2-4_arm64.deb abdb49828a81183ba305e946d467e4a706904f0a 5608 libpll_0.3.2-4_arm64.buildinfo Checksums-Sha256: a88fd17c925a00f52f879c81991984ad03e021e7e0f1b9d3407ca002e117f8d7 134884 libpll-dev_0.3.2-4_arm64.deb 2b74ba30fb4bed80613079540fe26fec0fe9ee09e87db06eeacda83c55160e9c 228004 libpll0-dbgsym_0.3.2-4_arm64.deb 7e6b1d07c95a9fa83a9dc0810944e9754fe7393ff8e5b801612fa66510721f99 114016 libpll0_0.3.2-4_arm64.deb 671b0c28007a23b7b3408cf4ea2d3f8a8b2f6ba868756ca6e13bf0fa14265283 5608 libpll_0.3.2-4_arm64.buildinfo Files: 2cae947b3430fc2857583a0d932d88da 134884 libdevel optional libpll-dev_0.3.2-4_arm64.deb ce6baaca123512f855abcfc25718413f 228004 debug optional libpll0-dbgsym_0.3.2-4_arm64.deb a175e45433427d7f584c8a54ab9e5977 114016 libs optional libpll0_0.3.2-4_arm64.deb 4656570217ae4b6f1a0443918cb5ea83 5608 science optional libpll_0.3.2-4_arm64.buildinfo Thu Jul 29 01:18:43 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.R72drxjBya/libpll_0.3.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.R72drxjBya/libpll_0.3.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.R72drxjBya/libpll_0.3.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.R72drxjBya/b1/libpll_0.3.2-4_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.R72drxjBya/b2/libpll_0.3.2-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.565s) 0.565s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 29 01:18:45 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 29 01:18:45 UTC 2021 I: libpll from bullseye built successfully and reproducibly on arm64. Thu Jul 29 01:18:47 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 29 01:18:47 UTC 2021 I: Submitting 8.0K b1/libpll_0.3.2-4_arm64.buildinfo.asc Thu Jul 29 01:18:47 UTC 2021 I: Submitting 8.0K b2/libpll_0.3.2-4_arm64.buildinfo.asc Thu Jul 29 01:18:48 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 29 01:18:48 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 29 01:18:48 UTC 2021 I: Removing signed libpll_0.3.2-4_arm64.buildinfo.asc files: removed './b1/libpll_0.3.2-4_arm64.buildinfo.asc' removed './b2/libpll_0.3.2-4_arm64.buildinfo.asc'