Mon Aug 9 09:18:40 UTC 2021 I: starting to build openstructure/bullseye/arm64 on jenkins on '2021-08-09 09:18' Mon Aug 9 09:18:40 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/16798/console.log Mon Aug 9 09:18:40 UTC 2021 I: Downloading source for bullseye/openstructure=2.2.0-6 --2021-08-09 09:18:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/o/openstructure/openstructure_2.2.0-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 4366 (4.3K) Saving to: ‘openstructure_2.2.0-6.dsc’ 0K .... 100% 201M=0s 2021-08-09 09:18:41 (201 MB/s) - ‘openstructure_2.2.0-6.dsc’ saved [4366/4366] Mon Aug 9 09:18:41 UTC 2021 I: openstructure_2.2.0-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: openstructure Binary: libost-base2.2, libost-bindings2.2, libost-conop2.2, libost-db2.2, libost-geom2.2, libost-gfx2.2, libost-gui2.2, libost-img-alg2.2, libost-img2.2, libost-info2.2, libost-io2.2, libost-mol-alg2.2, libost-mol2.2, libost-seq-alg2.2, libost-seq2.2, openstructure, python3-ost, libost-base-dev, libost-bindings-dev, libost-conop-dev, libost-db-dev, libost-geom-dev, libost-gfx-dev, libost-gui-dev, libost-img-alg-dev, libost-img-dev, libost-info-dev, libost-io-dev, libost-mol-alg-dev, libost-mol-dev, libost-seq-alg-dev, libost-seq-dev Architecture: any Version: 2.2.0-6 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://www.openstructure.org Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/openstructure Vcs-Git: https://salsa.debian.org/debichem-team/openstructure.git Testsuite: autopkgtest Testsuite-Triggers: clustalw, dssp, ncbi-blast+, voronota Build-Depends: clustalw , cmake, debhelper-compat (= 13), dh-python, dssp , libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib , python3-numpy , python3-pil , python3-pyqt5, python3-scipy , qtbase5-dev, sip-dev, voronota Package-List: libost-base-dev deb libdevel optional arch=any libost-base2.2 deb libs optional arch=any libost-bindings-dev deb libdevel optional arch=any libost-bindings2.2 deb libs optional arch=any libost-conop-dev deb libdevel optional arch=any libost-conop2.2 deb libs optional arch=any libost-db-dev deb libdevel optional arch=any libost-db2.2 deb libs optional arch=any libost-geom-dev deb libdevel optional arch=any libost-geom2.2 deb libs optional arch=any libost-gfx-dev deb libdevel optional arch=any libost-gfx2.2 deb libs optional arch=any libost-gui-dev deb libdevel optional arch=any libost-gui2.2 deb libs optional arch=any libost-img-alg-dev deb libdevel optional arch=any libost-img-alg2.2 deb libs optional arch=any libost-img-dev deb libdevel optional arch=any libost-img2.2 deb libs optional arch=any libost-info-dev deb libdevel optional arch=any libost-info2.2 deb libs optional arch=any libost-io-dev deb libdevel optional arch=any libost-io2.2 deb libs optional arch=any libost-mol-alg-dev deb libdevel optional arch=any libost-mol-alg2.2 deb libs optional arch=any libost-mol-dev deb libdevel optional arch=any libost-mol2.2 deb libs optional arch=any libost-seq-alg-dev deb libdevel optional arch=any libost-seq-alg2.2 deb libs optional arch=any libost-seq-dev deb libdevel optional arch=any libost-seq2.2 deb libs optional arch=any openstructure deb science optional arch=any python3-ost deb python optional arch=any Checksums-Sha1: 7cb42e74abd729278076ee4c5e5df4cf81541777 36187328 openstructure_2.2.0.orig.tar.gz ba5ec649ca499e8f2d83430fe385c2a599365981 13448 openstructure_2.2.0-6.debian.tar.xz Checksums-Sha256: cd1682bf4298aa8213a5e8bcd05b40356ca508d9bcdc06ac14f6d7b655a18975 36187328 openstructure_2.2.0.orig.tar.gz 5954fca06eff689eae7b496e83ae5b736530fee28a5455a46f782574f899157f 13448 openstructure_2.2.0-6.debian.tar.xz Files: 51b8209a30b964a246713059c9a4ce4c 36187328 openstructure_2.2.0.orig.tar.gz cf202c99bb2fcc04e92c19cd30fe1dd3 13448 openstructure_2.2.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmAjuCkSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHuTwP/3KbTE6+qTusIwkNrFuW1EZs5Um04iWl +d5TviNVBBg0sEKIr2xtvTRFYIO64ZRBMTXBtyrRKeW/hVgKDqJdQBqjOAG4KRwn JxYfnfoqBsV5vTZ8VZbzoAqay5w9eYnVCdcPJynmDgOKrYXWojILyBOrqyDckzka J0zWxhlslZoeqr/0AGxBARJA7o8ZIcHW493zgCn3bWR4A/vvGg/16VOVAI+70xsZ XSRfeEOfaQjdGRIgw8+MRJLfuao7BYbCZ29DO8fKqGD9a/28JfKQ1ja+jgLa7pMh /Ya5fmReOPJxo4qPAK888osbZ25MlWzrX0gGYEdAODiYLdwaRJVP/kfsF2Oh5Ovd 9UPLhH4ttIBTI8x8dlDm6ogils4TZVwXvP9uD5wX94BF3jnmA16qBHeJeUqjY6z3 NkXpyDcN97rYPf/nR2RBn+IqGaD4gi6DQg1ubKTwnG+zQJR5sYyo6xZMQ/cHbehz pgNpR8G7nSmHTjLOzjL86OWQgdomKg+koiQPitBr38jBdZe9nl4tPA9emONvfupe GrZao0NYLU9/QffV1zqdhdawD2Ij5/RcCcWV5RLEM3RPapNVxhE/P7WxNMLO44HE 6zi3CxJAgGCVdISZ6KBpGYVsomYbYmvf5NaDL9WjBTltlZU4wqXj/cp31NgJr7QB JfikYsRT7AzK =TZoZ -----END PGP SIGNATURE----- Mon Aug 9 09:18:41 UTC 2021 I: Checking whether the package is not for us Mon Aug 9 09:18:42 UTC 2021 I: Starting 1st build on remote node codethink10-arm64.debian.net. Mon Aug 9 09:18:42 UTC 2021 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Tue Aug 10 03:18:53 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 8 21:18:52 -12 2021 I: pbuilder-time-stamp: 1628500732 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [openstructure_2.2.0-6.dsc] I: copying [./openstructure_2.2.0.orig.tar.gz] I: copying [./openstructure_2.2.0-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.4S1rGYg6/trustedkeys.kbx': General error gpgv: Signature made Tue Feb 9 22:40:41 2021 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./openstructure_2.2.0-6.dsc dpkg-source: info: extracting openstructure in openstructure-2.2.0 dpkg-source: info: unpacking openstructure_2.2.0.orig.tar.gz dpkg-source: info: unpacking openstructure_2.2.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying ost-compare-structures.patch dpkg-source: info: applying ost_config.patch dpkg-source: info: applying skip-dssp-tests.patch dpkg-source: info: applying 76a5413023d8823b2cdca5d4b78d7fefd62b63c1.patch dpkg-source: info: applying da57a1f6a1c3a884321c27b438a8329725e546a5.patch dpkg-source: info: applying 5a749faedba0332e8a7be196a9bb72201fa699e9.patch dpkg-source: info: applying 9153648f1b773a1c1186d0a0ac29e78b659cd1f8.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1630/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1630' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.fh0Nng1P8k/pbuilderrc_HNM5 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.fh0Nng1P8k/b1 --logfile b1/build.log openstructure_2.2.0-6.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 21:25 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/1630/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: clustalw, cmake, debhelper-compat (= 13), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, sip-dev, voronota dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dssp; however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on libboost-all-dev; however: Package libboost-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libglu1-mesa-dev; however: Package libglu1-mesa-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on sip-dev; however: Package sip-dev is not installed. pbuilder-satisfydepends-dummy depends on voronota; however: Package voronota is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} clustalw{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dssp{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-container-dev{a} libboost-container1.74-dev{a} libboost-container1.74.0{a} libboost-context-dev{a} libboost-context1.74-dev{a} libboost-context1.74.0{a} libboost-coroutine-dev{a} libboost-coroutine1.74-dev{a} libboost-coroutine1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.74-dev{a} libboost-fiber-dev{a} libboost-fiber1.74-dev{a} libboost-fiber1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.74-dev{a} libboost-graph-parallel1.74.0{a} libboost-graph1.74-dev{a} libboost-graph1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-locale-dev{a} libboost-locale1.74-dev{a} libboost-locale1.74.0{a} libboost-log-dev{a} libboost-log1.74-dev{a} libboost-log1.74.0{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.74-dev{a} libboost-mpi-python1.74.0{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-nowide-dev{a} libboost-nowide1.74-dev{a} libboost-nowide1.74.0{a} libboost-numpy-dev{a} libboost-numpy1.74-dev{a} libboost-numpy1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost-random-dev{a} libboost-random1.74-dev{a} libboost-random1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.74-dev{a} libboost-stacktrace1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-test-dev{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.74-dev{a} libboost-type-erasure1.74.0{a} libboost-wave-dev{a} libboost-wave1.74-dev{a} libboost-wave1.74.0{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbrotli1{a} libbsd0{a} libcbor0{a} libcifpp1{a} libcups2{a} libcurl4{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1{a} libevdev2{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgfortran-10-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglib2.0-0{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libicu-dev{a} libicu67{a} libimagequant0{a} libinput-bin{a} libinput10{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.4-2{a} libllvm11{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmd4c0{a} libmpdec3{a} libmtdev1{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopengl-dev{a} libopengl0{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpng-dev{a} libpng16-16{a} libprocps8{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libqt5concurrent5{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5opengl5-dev{a} libqt5printsupport5{a} libqt5sql5{a} libqt5test5{a} libqt5widgets5{a} libqt5xml5{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libsqlite3-dev{a} libssh2-1{a} libsub-override-perl{a} libtiff-dev{a} libtiff5{a} libtiffxx5{a} libtool{a} libuchardet0{a} libucx0{a} libuv1{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrender1{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.sip{a} python3-scipy{a} python3-six{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} shared-mime-info{a} sip-dev{a} ttf-bitstream-vera{a} ucf{a} voronota{a} x11-common{a} x11proto-dev{a} x11proto-xext-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libwacom-bin lynx mesa-vulkan-drivers psmisc publicsuffix python3-olefile python3-sip-dev python3-tk qt5-gtk-platformtheme qttranslations5-l10n wget xauth xdg-user-dirs 0 packages upgraded, 392 newly installed, 0 to remove and 0 not upgraded. Need to get 196 MB of archives. After unpacking 1007 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libcbor0 arm64 0.5.0+dfsg-2 [20.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libfido2-1 arm64 1.6.0-2 [50.2 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 openssh-client arm64 1:8.4p1-5 [892 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 clustalw arm64 2.1+lgpl-7 [248 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74.0 arm64 1.74.0-9 [344 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libcifpp1 arm64 1.0.1-3 [1352 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 dssp arm64 4.0.0-2 [118 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 fontconfig arm64 2.13.1-4.2 [416 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 fonts-lyx all 2.3.6-1 [205 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libgfortran-10-dev arm64 10.2.1-6 [388 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 gfortran-10 arm64 10.2.1-6 [8654 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libnl-3-200 arm64 3.4.0-1+b1 [60.6 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libnl-route-3-200 arm64 3.4.0-1+b1 [149 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libibverbs1 arm64 33.2-1 [56.1 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 ibverbs-providers arm64 33.2-1 [235 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 icu-devtools arm64 67.1-7 [189 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libavahi-common-data arm64 0.8-5 [123 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libavahi-common3 arm64 0.8-5 [57.1 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libdbus-1-3 arm64 1.12.20-2 [208 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libavahi-client3 arm64 0.8-5 [60.6 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 101 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-tools-dev arm64 1.74.0-9 [1362 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 libboost-tools-dev arm64 1.74.0.3 [4508 B] Get: 103 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic1.74.0 arm64 1.74.0-9 [244 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic1.74-dev arm64 1.74.0-9 [245 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic-dev arm64 1.74.0.3 [4640 B] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono1.74.0 arm64 1.74.0-9 [251 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono1.74-dev arm64 1.74.0-9 [260 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono-dev arm64 1.74.0.3 [4960 B] Get: 109 http://deb.debian.org/debian bullseye/main arm64 libboost-container1.74.0 arm64 1.74.0-9 [269 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 libboost-container1.74-dev arm64 1.74.0-9 [275 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 libboost-container-dev arm64 1.74.0.3 [4812 B] Get: 112 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74.0 arm64 1.74.0-9 [241 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74.0 arm64 1.74.0-9 [331 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74-dev arm64 1.74.0-9 [381 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74-dev arm64 1.74.0-9 [250 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74.0 arm64 1.74.0-9 [242 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74-dev arm64 1.74.0-9 [243 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 libboost-thread1.74.0 arm64 1.74.0-9 [276 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 libboost-thread1.74-dev arm64 1.74.0-9 [291 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 libboost-context1.74.0 arm64 1.74.0-9 [243 kB] Get: 121 http://deb.debian.org/debian bullseye/main arm64 libboost-context1.74-dev arm64 1.74.0-9 [244 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 libboost-context-dev arm64 1.74.0.3 [4540 B] Get: 123 http://deb.debian.org/debian bullseye/main arm64 libboost-coroutine1.74.0 arm64 1.74.0-9 [257 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 libboost-coroutine1.74-dev arm64 1.74.0-9 [266 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 libboost-coroutine-dev arm64 1.74.0.3 [4608 B] Get: 126 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time-dev arm64 1.74.0.3 [4332 B] Get: 127 http://deb.debian.org/debian bullseye/main arm64 libboost-exception1.74-dev arm64 1.74.0-9 [241 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 libboost-exception-dev arm64 1.74.0.3 [4320 B] Get: 129 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem1.74.0 arm64 1.74.0-9 [278 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem1.74-dev arm64 1.74.0-9 [303 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 libboost-fiber1.74.0 arm64 1.74.0-9 [263 kB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 libboost-fiber1.74-dev arm64 1.74.0-9 [276 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 libboost-fiber-dev arm64 1.74.0.3 [4760 B] Get: 134 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem-dev arm64 1.74.0.3 [4368 B] Get: 135 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74.0 arm64 1.74.0-9 [473 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 libboost-graph1.74.0 arm64 1.74.0-9 [317 kB] Get: 137 http://deb.debian.org/debian bullseye/main arm64 libicu-dev arm64 67.1-7 [9468 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74-dev arm64 1.74.0-9 [549 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 libboost-test1.74.0 arm64 1.74.0-9 [445 kB] Get: 140 http://deb.debian.org/debian bullseye/main arm64 libboost-test1.74-dev arm64 1.74.0-9 [537 kB] Get: 141 http://deb.debian.org/debian bullseye/main arm64 libboost-graph1.74-dev arm64 1.74.0-9 [342 kB] Get: 142 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-dev arm64 1.74.0.3 [4436 B] Get: 143 http://deb.debian.org/debian bullseye/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-1 [132 kB] Get: 144 http://deb.debian.org/debian bullseye/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-1 [57.2 kB] Get: 145 http://deb.debian.org/debian bullseye/main arm64 librdmacm1 arm64 33.2-1 [65.3 kB] Get: 146 http://deb.debian.org/debian bullseye/main arm64 libfabric1 arm64 1.11.0-2 [389 kB] Get: 147 http://deb.debian.org/debian bullseye/main arm64 libhwloc15 arm64 2.4.1+dfsg-1 [131 kB] Get: 148 http://deb.debian.org/debian bullseye/main arm64 libpciaccess0 arm64 0.16-1 [52.9 kB] Get: 149 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 150 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 151 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 152 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.2-1 [311 kB] Get: 153 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.2-1 [748 kB] Get: 154 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 155 http://deb.debian.org/debian bullseye/main arm64 libxnvctrl0 arm64 460.91.03-1 [26.7 kB] Get: 156 http://deb.debian.org/debian bullseye/main arm64 ocl-icd-libopencl1 arm64 2.2.14-2 [41.5 kB] Get: 157 http://deb.debian.org/debian bullseye/main arm64 libhwloc-plugins arm64 2.4.1+dfsg-1 [21.1 kB] Get: 158 http://deb.debian.org/debian bullseye/main arm64 libpmix2 arm64 4.0.0-4.1 [513 kB] Get: 159 http://deb.debian.org/debian bullseye/main arm64 libnuma1 arm64 2.0.12-1+b1 [25.8 kB] Get: 160 http://deb.debian.org/debian bullseye/main arm64 libucx0 arm64 1.10.1~rc1+really.1.10.0-1 [567 kB] Get: 161 http://deb.debian.org/debian bullseye/main arm64 libopenmpi3 arm64 4.1.0-10 [2152 kB] Get: 162 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi1.74.0 arm64 1.74.0-9 [277 kB] Get: 163 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-parallel1.74.0 arm64 1.74.0-9 [286 kB] Get: 164 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-parallel1.74-dev arm64 1.74.0-9 [294 kB] Get: 165 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-parallel-dev arm64 1.74.0.3 [4460 B] Get: 166 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams1.74-dev arm64 1.74.0-9 [272 kB] Get: 167 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams-dev arm64 1.74.0.3 [4316 B] Get: 168 http://deb.debian.org/debian bullseye/main arm64 libboost-locale1.74.0 arm64 1.74.0-9 [446 kB] Get: 169 http://deb.debian.org/debian bullseye/main arm64 libboost-locale1.74-dev arm64 1.74.0-9 [567 kB] Get: 170 http://deb.debian.org/debian bullseye/main arm64 libboost-locale-dev arm64 1.74.0.3 [4660 B] Get: 171 http://deb.debian.org/debian bullseye/main arm64 libboost-log1.74.0 arm64 1.74.0-9 [571 kB] Get: 172 http://deb.debian.org/debian bullseye/main arm64 libboost-log1.74-dev arm64 1.74.0-9 [801 kB] Get: 173 http://deb.debian.org/debian bullseye/main arm64 libboost-log-dev arm64 1.74.0.3 [4540 B] Get: 174 http://deb.debian.org/debian bullseye/main arm64 libboost-math1.74.0 arm64 1.74.0-9 [490 kB] Get: 175 http://deb.debian.org/debian bullseye/main arm64 libboost-math1.74-dev arm64 1.74.0-9 [581 kB] Get: 176 http://deb.debian.org/debian bullseye/main arm64 libboost-math-dev arm64 1.74.0.3 [4532 B] Get: 177 http://deb.debian.org/debian bullseye/main arm64 openmpi-common all 4.1.0-10 [179 kB] Get: 178 http://deb.debian.org/debian bullseye/main arm64 libnl-3-dev arm64 3.4.0-1+b1 [104 kB] Get: 179 http://deb.debian.org/debian bullseye/main arm64 libnl-route-3-dev arm64 3.4.0-1+b1 [176 kB] Get: 180 http://deb.debian.org/debian bullseye/main arm64 libibverbs-dev arm64 33.2-1 [480 kB] Get: 181 http://deb.debian.org/debian bullseye/main arm64 libnuma-dev arm64 2.0.12-1+b1 [40.2 kB] Get: 182 http://deb.debian.org/debian bullseye/main arm64 libltdl7 arm64 2.4.6-15 [390 kB] Get: 183 http://deb.debian.org/debian bullseye/main arm64 libltdl-dev arm64 2.4.6-15 [162 kB] Get: 184 http://deb.debian.org/debian bullseye/main arm64 libhwloc-dev arm64 2.4.1+dfsg-1 [217 kB] Get: 185 http://deb.debian.org/debian bullseye/main arm64 libevent-2.1-7 arm64 2.1.12-stable-1 [176 kB] Get: 186 http://deb.debian.org/debian bullseye/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-1 [105 kB] Get: 187 http://deb.debian.org/debian bullseye/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-1 [63.1 kB] Get: 188 http://deb.debian.org/debian bullseye/main arm64 libevent-dev arm64 2.1.12-stable-1 [309 kB] Get: 189 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 190 http://deb.debian.org/debian bullseye/main arm64 libpmix-dev arm64 4.0.0-4.1 [667 kB] Get: 191 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 192 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 193 http://deb.debian.org/debian bullseye/main arm64 openmpi-bin arm64 4.1.0-10 [237 kB] Get: 194 http://deb.debian.org/debian bullseye/main arm64 libopenmpi-dev arm64 4.1.0-10 [1192 kB] Get: 195 http://deb.debian.org/debian bullseye/main arm64 mpi-default-dev arm64 1.13 [5476 B] Get: 196 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi1.74-dev arm64 1.74.0-9 [303 kB] Get: 197 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-dev arm64 1.74.0.3 [4420 B] Get: 198 http://deb.debian.org/debian bullseye/main arm64 libboost-python1.74.0 arm64 1.74.0-9 [305 kB] Get: 199 http://deb.debian.org/debian bullseye/main arm64 mpi-default-bin arm64 1.13 [4672 B] Get: 200 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-python1.74.0 arm64 1.74.0-9 [247 kB] Get: 201 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-python1.74-dev arm64 1.74.0-9 [248 kB] Get: 202 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-python-dev arm64 1.74.0.3 [4456 B] Get: 203 http://deb.debian.org/debian bullseye/main arm64 libboost-numpy1.74.0 arm64 1.74.0-9 [251 kB] Get: 204 http://deb.debian.org/debian bullseye/main arm64 libboost-numpy1.74-dev arm64 1.74.0-9 [256 kB] Get: 205 http://deb.debian.org/debian bullseye/main arm64 libboost-numpy-dev arm64 1.74.0.3 [4376 B] Get: 206 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74-dev arm64 1.74.0-9 [382 kB] Get: 207 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options-dev arm64 1.74.0.3 [4340 B] Get: 208 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 209 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 210 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 211 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 212 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 213 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 214 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 215 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 216 http://deb.debian.org/debian bullseye/main arm64 libboost-python1.74-dev arm64 1.74.0-9 [331 kB] Get: 217 http://deb.debian.org/debian bullseye/main arm64 libboost-python-dev arm64 1.74.0.3 [4632 B] Get: 218 http://deb.debian.org/debian bullseye/main arm64 libboost-random1.74.0 arm64 1.74.0-9 [250 kB] Get: 219 http://deb.debian.org/debian bullseye/main arm64 libboost-random1.74-dev arm64 1.74.0-9 [254 kB] Get: 220 http://deb.debian.org/debian bullseye/main arm64 libboost-random-dev arm64 1.74.0.3 [4336 B] Get: 221 http://deb.debian.org/debian bullseye/main arm64 libboost-regex-dev arm64 1.74.0.3 [4596 B] Get: 222 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization-dev arm64 1.74.0.3 [4560 B] Get: 223 http://deb.debian.org/debian bullseye/main arm64 libboost-stacktrace1.74.0 arm64 1.74.0-9 [275 kB] Get: 224 http://deb.debian.org/debian bullseye/main arm64 libboost-stacktrace1.74-dev arm64 1.74.0-9 [255 kB] Get: 225 http://deb.debian.org/debian bullseye/main arm64 libboost-stacktrace-dev arm64 1.74.0.3 [4328 B] Get: 226 http://deb.debian.org/debian bullseye/main arm64 libboost-system-dev arm64 1.74.0.3 [4468 B] Get: 227 http://deb.debian.org/debian bullseye/main arm64 libboost-test-dev arm64 1.74.0.3 [4368 B] Get: 228 http://deb.debian.org/debian bullseye/main arm64 libboost-thread-dev arm64 1.74.0.3 [4356 B] Get: 229 http://deb.debian.org/debian bullseye/main arm64 libboost-timer1.74.0 arm64 1.74.0-9 [250 kB] Get: 230 http://deb.debian.org/debian bullseye/main arm64 libboost-timer1.74-dev arm64 1.74.0-9 [254 kB] Get: 231 http://deb.debian.org/debian bullseye/main arm64 libboost-timer-dev arm64 1.74.0.3 [4456 B] Get: 232 http://deb.debian.org/debian bullseye/main arm64 libboost-type-erasure1.74.0 arm64 1.74.0-9 [255 kB] Get: 233 http://deb.debian.org/debian bullseye/main arm64 libboost-type-erasure1.74-dev arm64 1.74.0-9 [261 kB] Get: 234 http://deb.debian.org/debian bullseye/main arm64 libboost-type-erasure-dev arm64 1.74.0.3 [4428 B] Get: 235 http://deb.debian.org/debian bullseye/main arm64 libboost-wave1.74.0 arm64 1.74.0-9 [414 kB] Get: 236 http://deb.debian.org/debian bullseye/main arm64 libboost-wave1.74-dev arm64 1.74.0-9 [490 kB] Get: 237 http://deb.debian.org/debian bullseye/main arm64 libboost-wave-dev arm64 1.74.0.3 [4360 B] Get: 238 http://deb.debian.org/debian bullseye/main arm64 libboost-nowide1.74.0 arm64 1.74.0-9 [243 kB] Get: 239 http://deb.debian.org/debian bullseye/main arm64 libboost-nowide1.74-dev arm64 1.74.0-9 [244 kB] Get: 240 http://deb.debian.org/debian bullseye/main arm64 libboost-nowide-dev arm64 1.74.0.3 [4392 B] Get: 241 http://deb.debian.org/debian bullseye/main arm64 libboost-all-dev arm64 1.74.0.3 [4680 B] Get: 242 http://deb.debian.org/debian bullseye/main arm64 libcups2 arm64 2.3.3op2-3+deb11u1 [334 kB] Get: 243 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 244 http://deb.debian.org/debian bullseye/main arm64 libdeflate-dev arm64 1.7-1 [44.5 kB] Get: 245 http://deb.debian.org/debian bullseye/main arm64 libdouble-conversion3 arm64 3.1.5-6.1 [37.6 kB] Get: 246 http://deb.debian.org/debian bullseye/main arm64 libdrm-common all 2.4.104-1 [14.9 kB] Get: 247 http://deb.debian.org/debian bullseye/main arm64 libdrm2 arm64 2.4.104-1 [41.3 kB] Get: 248 http://deb.debian.org/debian bullseye/main arm64 libdrm-amdgpu1 arm64 2.4.104-1 [28.0 kB] Get: 249 http://deb.debian.org/debian bullseye/main arm64 libdrm-nouveau2 arm64 2.4.104-1 [26.1 kB] Get: 250 http://deb.debian.org/debian bullseye/main arm64 libdrm-radeon1 arm64 2.4.104-1 [29.3 kB] Get: 251 http://deb.debian.org/debian bullseye/main arm64 libglvnd0 arm64 1.3.2-1 [44.3 kB] Get: 252 http://deb.debian.org/debian bullseye/main arm64 libwayland-server0 arm64 1.18.0-2~exp1.1 [33.7 kB] Get: 253 http://deb.debian.org/debian bullseye/main arm64 libgbm1 arm64 20.3.5-1 [72.5 kB] Get: 254 http://deb.debian.org/debian bullseye/main arm64 libglapi-mesa arm64 20.3.5-1 [96.7 kB] Get: 255 http://deb.debian.org/debian bullseye/main arm64 libwayland-client0 arm64 1.18.0-2~exp1.1 [26.5 kB] Get: 256 http://deb.debian.org/debian bullseye/main arm64 libx11-xcb1 arm64 2:1.7.2-1 [203 kB] Get: 257 http://deb.debian.org/debian bullseye/main arm64 libxcb-dri2-0 arm64 1.14-3 [103 kB] Get: 258 http://deb.debian.org/debian bullseye/main arm64 libxcb-dri3-0 arm64 1.14-3 [102 kB] Get: 259 http://deb.debian.org/debian bullseye/main arm64 libxcb-present0 arm64 1.14-3 [101 kB] Get: 260 http://deb.debian.org/debian bullseye/main arm64 libxcb-sync1 arm64 1.14-3 [105 kB] Get: 261 http://deb.debian.org/debian bullseye/main arm64 libxcb-xfixes0 arm64 1.14-3 [105 kB] Get: 262 http://deb.debian.org/debian bullseye/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get: 263 http://deb.debian.org/debian bullseye/main arm64 libegl-mesa0 arm64 20.3.5-1 [134 kB] Get: 264 http://deb.debian.org/debian bullseye/main arm64 libegl1 arm64 1.3.2-1 [34.4 kB] Get: 265 http://deb.debian.org/debian bullseye/main arm64 libxcb-glx0 arm64 1.14-3 [118 kB] Get: 266 http://deb.debian.org/debian bullseye/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB] Get: 267 http://deb.debian.org/debian bullseye/main arm64 libxdamage1 arm64 1:1.1.5-2 [15.7 kB] Get: 268 http://deb.debian.org/debian bullseye/main arm64 libxfixes3 arm64 1:5.0.3-2 [22.1 kB] Get: 269 http://deb.debian.org/debian bullseye/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 270 http://deb.debian.org/debian bullseye/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get: 271 http://deb.debian.org/debian bullseye/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get: 272 http://deb.debian.org/debian bullseye/main arm64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 273 http://deb.debian.org/debian bullseye/main arm64 libsensors5 arm64 1:3.6.0-7 [51.2 kB] Get: 274 http://deb.debian.org/debian bullseye/main arm64 libvulkan1 arm64 1.2.162.0-1 [95.7 kB] Get: 275 http://deb.debian.org/debian bullseye/main arm64 libgl1-mesa-dri arm64 20.3.5-1 [6552 kB] Get: 276 http://deb.debian.org/debian bullseye/main arm64 libglx-mesa0 arm64 20.3.5-1 [186 kB] Get: 277 http://deb.debian.org/debian bullseye/main arm64 libglx0 arm64 1.3.2-1 [32.0 kB] Get: 278 http://deb.debian.org/debian bullseye/main arm64 libgl1 arm64 1.3.2-1 [91.4 kB] Get: 279 http://deb.debian.org/debian bullseye/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 280 http://deb.debian.org/debian bullseye/main arm64 x11proto-dev all 2020.1-1 [594 kB] Get: 281 http://deb.debian.org/debian bullseye/main arm64 libxau-dev arm64 1:1.0.9-1 [23.2 kB] Get: 282 http://deb.debian.org/debian bullseye/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get: 283 http://deb.debian.org/debian bullseye/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 284 http://deb.debian.org/debian bullseye/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get: 285 http://deb.debian.org/debian bullseye/main arm64 libxcb1-dev arm64 1.14-3 [177 kB] Get: 286 http://deb.debian.org/debian bullseye/main arm64 libx11-dev arm64 2:1.7.2-1 [828 kB] Get: 287 http://deb.debian.org/debian bullseye/main arm64 libglx-dev arm64 1.3.2-1 [16.3 kB] Get: 288 http://deb.debian.org/debian bullseye/main arm64 libgl-dev arm64 1.3.2-1 [100 kB] Get: 289 http://deb.debian.org/debian bullseye/main arm64 libegl-dev arm64 1.3.2-1 [19.6 kB] Get: 290 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 291 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get: 292 http://deb.debian.org/debian bullseye/main arm64 libeigen3-dev all 3.3.9-2 [858 kB] Get: 293 http://deb.debian.org/debian bullseye/main arm64 libevdev2 arm64 1.11.0+dfsg-1 [31.7 kB] Get: 294 http://deb.debian.org/debian bullseye/main arm64 libfftw3-double3 arm64 3.3.8-2 [385 kB] Get: 295 http://deb.debian.org/debian bullseye/main arm64 libfftw3-long3 arm64 3.3.8-2 [526 kB] Get: 296 http://deb.debian.org/debian bullseye/main arm64 libfftw3-single3 arm64 3.3.8-2 [630 kB] Get: 297 http://deb.debian.org/debian bullseye/main arm64 libfftw3-bin arm64 3.3.8-2 [47.4 kB] Get: 298 http://deb.debian.org/debian bullseye/main arm64 libfftw3-dev arm64 3.3.8-2 [1455 kB] Get: 299 http://deb.debian.org/debian bullseye/main arm64 libgles1 arm64 1.3.2-1 [13.0 kB] Get: 300 http://deb.debian.org/debian bullseye/main arm64 libgles2 arm64 1.3.2-1 [18.4 kB] Get: 301 http://deb.debian.org/debian bullseye/main arm64 libgles-dev arm64 1.3.2-1 [50.3 kB] Get: 302 http://deb.debian.org/debian bullseye/main arm64 libopengl0 arm64 1.3.2-1 [32.4 kB] Get: 303 http://deb.debian.org/debian bullseye/main arm64 libopengl-dev arm64 1.3.2-1 [5872 B] Get: 304 http://deb.debian.org/debian bullseye/main arm64 libglvnd-dev arm64 1.3.2-1 [13.9 kB] Get: 305 http://deb.debian.org/debian bullseye/main arm64 libgl1-mesa-dev arm64 20.3.5-1 [51.1 kB] Get: 306 http://deb.debian.org/debian bullseye/main arm64 libglu1-mesa arm64 9.0.1-1 [146 kB] Get: 307 http://deb.debian.org/debian bullseye/main arm64 libglu1-mesa-dev arm64 9.0.1-1 [186 kB] Get: 308 http://deb.debian.org/debian bullseye/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 309 http://deb.debian.org/debian bullseye/main arm64 libgudev-1.0-0 arm64 234-1 [13.9 kB] Get: 310 http://deb.debian.org/debian bullseye/main arm64 libharfbuzz0b arm64 2.7.4-1 [1445 kB] Get: 311 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB] Get: 312 http://deb.debian.org/debian bullseye/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 313 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 314 http://deb.debian.org/debian bullseye/main arm64 libwacom-common all 1.8-2 [49.7 kB] Get: 315 http://deb.debian.org/debian bullseye/main arm64 libwacom2 arm64 1.8-2 [20.8 kB] Get: 316 http://deb.debian.org/debian bullseye/main arm64 libinput-bin arm64 1.16.4-3 [23.1 kB] Get: 317 http://deb.debian.org/debian bullseye/main arm64 libmtdev1 arm64 1.1.6-1 [22.8 kB] Get: 318 http://deb.debian.org/debian bullseye/main arm64 libinput10 arm64 1.16.4-3 [107 kB] Get: 319 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 320 http://deb.debian.org/debian bullseye/main arm64 libjbig-dev arm64 2.1-3.1+b2 [28.3 kB] Get: 321 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 322 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo-dev arm64 1:2.0.6-4 [255 kB] Get: 323 http://deb.debian.org/debian bullseye/main arm64 libjpeg-dev arm64 1:2.0.6-4 [67.8 kB] Get: 324 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 325 http://deb.debian.org/debian bullseye/main arm64 liblbfgsb0 arm64 3.0+dfsg.3-9 [24.5 kB] Get: 326 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 327 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get: 328 http://deb.debian.org/debian bullseye/main arm64 libmd4c0 arm64 0.4.7-2 [41.1 kB] Get: 329 http://deb.debian.org/debian bullseye/main arm64 libpcre2-16-0 arm64 10.36-2 [202 kB] Get: 330 http://deb.debian.org/debian bullseye/main arm64 libpng-dev arm64 1.6.37-3 [294 kB] Get: 331 http://deb.debian.org/debian bullseye/main arm64 shared-mime-info arm64 2.0-1 [700 kB] Get: 332 http://deb.debian.org/debian bullseye/main arm64 libqt5core5a arm64 5.15.2+dfsg-9 [1681 kB] Get: 333 http://deb.debian.org/debian bullseye/main arm64 libqt5concurrent5 arm64 5.15.2+dfsg-9 [70.7 kB] Get: 334 http://deb.debian.org/debian bullseye/main arm64 libqt5dbus5 arm64 5.15.2+dfsg-9 [218 kB] Get: 335 http://deb.debian.org/debian bullseye/main arm64 libqt5network5 arm64 5.15.2+dfsg-9 [622 kB] Get: 336 http://deb.debian.org/debian bullseye/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 337 http://deb.debian.org/debian bullseye/main arm64 libxcb-icccm4 arm64 0.4.1-1.1 [26.9 kB] Get: 338 http://deb.debian.org/debian bullseye/main arm64 libxcb-util1 arm64 0.4.0-1+b1 [23.2 kB] Get: 339 http://deb.debian.org/debian bullseye/main arm64 libxcb-image0 arm64 0.4.0-1+b3 [23.8 kB] Get: 340 http://deb.debian.org/debian bullseye/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b2 [16.0 kB] Get: 341 http://deb.debian.org/debian bullseye/main arm64 libxcb-randr0 arm64 1.14-3 [113 kB] Get: 342 http://deb.debian.org/debian bullseye/main arm64 libxcb-render0 arm64 1.14-3 [111 kB] Get: 343 http://deb.debian.org/debian bullseye/main arm64 libxcb-render-util0 arm64 0.3.9-1+b1 [17.5 kB] Get: 344 http://deb.debian.org/debian bullseye/main arm64 libxcb-shape0 arm64 1.14-3 [102 kB] Get: 345 http://deb.debian.org/debian bullseye/main arm64 libxcb-xinerama0 arm64 1.14-3 [101 kB] Get: 346 http://deb.debian.org/debian bullseye/main arm64 libxcb-xinput0 arm64 1.14-3 [125 kB] Get: 347 http://deb.debian.org/debian bullseye/main arm64 libxcb-xkb1 arm64 1.14-3 [125 kB] Get: 348 http://deb.debian.org/debian bullseye/main arm64 xkb-data all 2.29-2 [655 kB] Get: 349 http://deb.debian.org/debian bullseye/main arm64 libxkbcommon0 arm64 1.0.3-2 [95.5 kB] Get: 350 http://deb.debian.org/debian bullseye/main arm64 libxkbcommon-x11-0 arm64 1.0.3-2 [16.0 kB] Get: 351 http://deb.debian.org/debian bullseye/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 352 http://deb.debian.org/debian bullseye/main arm64 libqt5gui5 arm64 5.15.2+dfsg-9 [2972 kB] Get: 353 http://deb.debian.org/debian bullseye/main arm64 libqt5widgets5 arm64 5.15.2+dfsg-9 [2228 kB] Get: 354 http://deb.debian.org/debian bullseye/main arm64 libqt5xml5 arm64 5.15.2+dfsg-9 [145 kB] Get: 355 http://deb.debian.org/debian bullseye/main arm64 libqt5designer5 arm64 5.15.2-5 [2663 kB] Get: 356 http://deb.debian.org/debian bullseye/main arm64 libqt5sql5 arm64 5.15.2+dfsg-9 [140 kB] Get: 357 http://deb.debian.org/debian bullseye/main arm64 libqt5help5 arm64 5.15.2-5 [137 kB] Get: 358 http://deb.debian.org/debian bullseye/main arm64 libqt5opengl5 arm64 5.15.2+dfsg-9 [167 kB] Get: 359 http://deb.debian.org/debian bullseye/main arm64 libqt5printsupport5 arm64 5.15.2+dfsg-9 [215 kB] Get: 360 http://deb.debian.org/debian bullseye/main arm64 libqt5test5 arm64 5.15.2+dfsg-9 [156 kB] Get: 361 http://deb.debian.org/debian bullseye/main arm64 libvulkan-dev arm64 1.2.162.0-1 [586 kB] Get: 362 http://deb.debian.org/debian bullseye/main arm64 x11proto-xext-dev all 2020.1-1 [3404 B] Get: 363 http://deb.debian.org/debian bullseye/main arm64 libxext-dev arm64 2:1.3.3-1.1 [107 kB] Get: 364 http://deb.debian.org/debian bullseye/main arm64 qt5-qmake-bin arm64 5.15.2+dfsg-9 [913 kB] Get: 365 http://deb.debian.org/debian bullseye/main arm64 qtchooser arm64 66-2 [24.9 kB] Get: 366 http://deb.debian.org/debian bullseye/main arm64 qt5-qmake arm64 5.15.2+dfsg-9 [249 kB] Get: 367 http://deb.debian.org/debian bullseye/main arm64 qtbase5-dev-tools arm64 5.15.2+dfsg-9 [716 kB] Get: 368 http://deb.debian.org/debian bullseye/main arm64 qtbase5-dev arm64 5.15.2+dfsg-9 [1148 kB] Get: 369 http://deb.debian.org/debian bullseye/main arm64 libqt5opengl5-dev arm64 5.15.2+dfsg-9 [77.9 kB] Get: 370 http://deb.debian.org/debian bullseye/main arm64 libsqlite3-dev arm64 3.34.1-3 [911 kB] Get: 371 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 372 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 373 http://deb.debian.org/debian bullseye/main arm64 libtiffxx5 arm64 4.2.0-1 [128 kB] Get: 374 http://deb.debian.org/debian bullseye/main arm64 libtiff-dev arm64 4.2.0-1 [404 kB] Get: 375 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 376 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 377 http://deb.debian.org/debian bullseye/main arm64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 378 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-2 [17.5 kB] Get: 379 http://deb.debian.org/debian bullseye/main arm64 python3-cycler all 0.10.0-3 [8084 B] Get: 380 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 381 http://deb.debian.org/debian bullseye/main arm64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 382 http://deb.debian.org/debian bullseye/main arm64 python3-kiwisolver arm64 1.3.1-1+b1 [51.6 kB] Get: 383 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 384 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 385 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 386 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3 [428 kB] Get: 387 http://deb.debian.org/debian bullseye/main arm64 python3-matplotlib arm64 3.3.4-1 [4109 kB] Get: 388 http://deb.debian.org/debian bullseye/main arm64 python3-pyqt5.sip arm64 12.8.1-1+b2 [53.5 kB] Get: 389 http://deb.debian.org/debian bullseye/main arm64 python3-pyqt5 arm64 5.15.2+dfsg-3 [2263 kB] Get: 390 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] Get: 391 http://deb.debian.org/debian bullseye/main arm64 sip-dev arm64 4.19.25+dfsg-1 [243 kB] Get: 392 http://deb.debian.org/debian bullseye/main arm64 voronota arm64 1.22.3149-1 [1933 kB] Fetched 196 MB in 6s (32.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../4-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../6-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20958 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../001-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../006-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../009-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../010-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../011-libedit2_3.1-20191231-2+b1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:arm64. Preparing to unpack .../012-libcbor0_0.5.0+dfsg-2_arm64.deb ... Unpacking libcbor0:arm64 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:arm64. 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Setting up libxnvctrl0:arm64 (460.91.03-1) ... Setting up libqt5sql5:arm64 (5.15.2+dfsg-9) ... Setting up libboost-iostreams1.74-dev:arm64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:arm64 (3.4.0-1+b1) ... Setting up libboost-date-time1.74-dev:arm64 (1.74.0-9) ... Setting up libltdl-dev:arm64 (2.4.6-15) ... Setting up qtbase5-dev-tools (5.15.2+dfsg-9) ... Setting up libqt5xml5:arm64 (5.15.2+dfsg-9) ... Setting up libegl-mesa0:arm64 (20.3.5-1) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up libxfixes3:arm64 (1:5.0.3-2) ... Setting up libboost-graph1.74-dev:arm64 (1.74.0-9) ... Setting up libboost-numpy-dev (1.74.0.3) ... Setting up libboost-serialization-dev:arm64 (1.74.0.3) ... Setting up libboost-date-time-dev:arm64 (1.74.0.3) ... Setting up libxext-dev:arm64 (2:1.3.3-1.1) ... Setting up libcups2:arm64 (2.3.3op2-3+deb11u1) ... Setting up libegl1:arm64 (1.3.2-1) ... Setting up cmake (3.18.4-2) ... 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Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up libegl-dev:arm64 (1.3.2-1) ... Setting up libpmix2:arm64 (4.0.0-4.1) ... Setting up libopenmpi3:arm64 (4.1.0-10) ... Setting up libboost-mpi1.74.0 (1.74.0-9) ... Setting up libqt5gui5:arm64 (5.15.2+dfsg-9) ... Setting up libboost-locale-dev:arm64 (1.74.0.3) ... Setting up libqt5widgets5:arm64 (5.15.2+dfsg-9) ... Setting up libboost-context-dev:arm64 (1.74.0.3) ... Setting up libqt5help5:arm64 (5.15.2-5) ... Setting up libboost-type-erasure-dev:arm64 (1.74.0.3) ... Setting up libqt5printsupport5:arm64 (5.15.2+dfsg-9) ... Setting up python3-dev (3.9.2-3) ... Setting up libglu1-mesa-dev:arm64 (9.0.1-1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up qtbase5-dev:arm64 (5.15.2+dfsg-9) ... Setting up libqt5opengl5:arm64 (5.15.2+dfsg-9) ... Setting up libgles-dev:arm64 (1.3.2-1) ... Setting up libboost-graph-parallel1.74.0 (1.74.0-9) ... Setting up libpmix-dev:arm64 (4.0.0-4.1) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up libqt5designer5:arm64 (5.15.2-5) ... Setting up libqt5opengl5-dev:arm64 (5.15.2+dfsg-9) ... Setting up mpi-default-bin (1.13) ... Setting up libglvnd-dev:arm64 (1.3.2-1) ... Setting up libboost-python1.74-dev (1.74.0-9) ... Setting up libboost-python-dev (1.74.0.3) ... Setting up libboost-graph-parallel1.74-dev (1.74.0-9) ... Setting up libgl1-mesa-dev:arm64 (20.3.5-1) ... Setting up libopenmpi-dev:arm64 (4.1.0-10) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up python3-pyqt5 (5.15.2+dfsg-3) ... Setting up libboost-mpi-python1.74.0 (1.74.0-9) ... Setting up libboost-graph-parallel-dev (1.74.0.3) ... Setting up mpi-default-dev (1.13) ... Setting up libboost-mpi1.74-dev (1.74.0-9) ... Setting up libboost-mpi-python1.74-dev (1.74.0-9) ... Setting up libboost-mpi-python-dev (1.74.0.3) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libboost-all-dev (1.74.0.3) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/openstructure-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../openstructure_2.2.0-6_source.changes dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.2.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/openstructure-2.2.0' dh_auto_configure -- -DUBUNTU_LAYOUT=ON cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DUBUNTU_LAYOUT=ON .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Found Python: /usr/bin/python3.9 (found suitable version "3.9.2", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:955 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost package: python39 CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:969 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: unit_test_framework CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:976 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:976 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: filesystem system CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:980 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:980 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: iostreams regex CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:983 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: program_options CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:986 (find_package) CMakeLists.txt:198 (setup_boost) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: regex CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) cmake_support/OST.cmake:989 (find_package) CMakeLists.txt:198 (setup_boost) -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: thread chrono date_time atomic -- Found OpenGL: /usr/lib/aarch64-linux-gnu/libOpenGL.so -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.37") -- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") -- Found SQLITE3: /usr/lib/aarch64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") -- Found FFTW: /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Found TIFF: /usr/lib/aarch64-linux-gnu/libtiff.so (found version "4.2.0") -- Searching for python module PyQt5 for /usr/bin/python3.9 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3.9 -- Found python module PyQt5.sip -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Image Processing support (-DENABLE_IMG) : ON Shader support (-DUSE_SHADER) : OFF Numpy support (-DUSE_NUMPY) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : OFF OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : NONE Optimize (-DOPTIMIZE) : OFF Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/openstructure-2.2.0/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/openstructure-2.2.0' dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/openstructure-2.2.0 -B/build/openstructure-2.2.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openstructure-2.2.0/obj-aarch64-linux-gnu/CMakeFiles /build/openstructure-2.2.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color= make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake --color= make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake --color= make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake --color= make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/share /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend.internal". Scanning dependencies of target ost_geom_pymod Scanning dependencies of target create_stage make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/geom/./__init__.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend.internal". Scanning dependencies of target ost_bindings_pymod Scanning dependencies of target ost_conop_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./__init__.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./__init__.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend.internal". Scanning dependencies of target ost_db_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build Scanning dependencies of target subst___init__.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/db/./__init__.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/depend.internal". Scanning dependencies of target ost_gfx_pymod Scanning dependencies of target gui_images cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./lga.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./lga.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/openstructure-2.2.0/cmake_support/substitute.cmake make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./__init__.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/images/logo-small.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/pymod/./cleanup.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./cleanup.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 0%] Built target ost_db_pymod [ 0%] Built target gui_images cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/pymod/./py_gfx_obj.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./py_gfx_obj.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/share /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./hbplus.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hbplus.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake --color= [ 0%] Built target ost_geom_pymod make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake --color= [ 0%] Built target ost_conop_pymod Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend.internal". Scanning dependencies of target ost_gui_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./__init__.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake --color= [ 0%] Built target subst___init__.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend.internal". cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./msms.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./msms.py Scanning dependencies of target ost_gui_dng_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/dng/__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/__init__.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend.internal". Scanning dependencies of target ost_gui_scene_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/__init__.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/depend.internal". Scanning dependencies of target scene_icons make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 0%] Built target create_stage make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build [ 0%] Built target ost_gfx_pymod Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend.internal". Scanning dependencies of target ost_img_pymod cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./init_context_menu.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_context_menu.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/add_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/./__init__.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/color_options_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_options_widget.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/info/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./tmtools.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./tmtools.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/dng/termuse.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/termuse.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./init_menubar.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_menubar.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend.internal". Scanning dependencies of target ost_info_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/color_select_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_select_widget.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/dng/superpositiondialog.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/superpositiondialog.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/info/./__init__.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend.internal". Scanning dependencies of target ost_img_alg_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/alg/./__init__.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/close_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png [ 0%] Built target ost_img_pymod make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/combo_options_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/combo_options_widget.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./dssp.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./dssp.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/dng/init.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/init.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./init_spacenav.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_spacenav.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/cpk_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/cpk_widget.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend.internal". Scanning dependencies of target ost_io_pymod cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/critical_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./__init__.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/dng/menu.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/menu.py [ 0%] Built target ost_img_alg_pymod [ 0%] Built target ost_info_pymod make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./init_splash.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_splash.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/pymod/./remote.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./remote.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/custom_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/custom_widget.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./clustalw.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./clustalw.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend.internal". Scanning dependencies of target ost_mol_pymod cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/delete_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./trajectory_viewer.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./trajectory_viewer.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/./__init__.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/pymod/./repository.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./repository.py [ 0%] Built target ost_gui_dng_pymod Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend.internal". Scanning dependencies of target ost_mol_alg_pymod make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./__init__.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./helpwidget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./helpwidget.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend.internal". Scanning dependencies of target ost_seq_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_editor_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_editor_widget.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/./__init__.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./views.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./views.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./table.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./table.py [ 0%] Built target ost_io_pymod [ 0%] Built target ost_mol_pymod cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./utils.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./utils.py make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/distance_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./superpose.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./superpose.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_info_handler.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_info_handler.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./naccess.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./naccess.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/./gosty_startup.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./gosty_startup.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/depend.internal". Scanning dependencies of target subst_ost_startup.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./hhblits.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits.py make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_list_model.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_list_model.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend.internal". Scanning dependencies of target ost_seq_alg_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/find_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/pymod/./__init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./__init__.py [ 0%] Built target ost_gui_pymod cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_preset_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_preset_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./qsscoring.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./qsscoring.py make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color= [ 0%] Built target ost_seq_pymod cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/information_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./hhblits2.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits2.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/pymod/./mat.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./mat.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/depend.internal". Scanning dependencies of target subst_dng make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/depend.internal". Scanning dependencies of target subst_ost make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/map_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/hsc_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/hsc_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./trajectory_analysis.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./trajectory_analysis.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./hhblits3.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits3.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/pymod/./renumber.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./renumber.py [ 0%] Built target subst_ost_startup.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/menubar_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./blast.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./blast.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./structure_analysis.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./structure_analysis.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py [ 0%] Built target subst_ost Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/depend.internal". Scanning dependencies of target subst_ost_config make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/actions /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions /build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake --color= [ 0%] Built target ost_seq_alg_pymod make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./helix_kinks.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./helix_kinks.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./cadscore.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./cadscore.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png [ 0%] Built target subst_dng Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/depend.internal". cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/selection_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png Scanning dependencies of target actions make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/actions/ost-compare-structures /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./kclust.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./kclust.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/pymod/./hbond.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./hbond.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/show_sidebar_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/depend.internal". Scanning dependencies of target ost_config_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_preset_info_handler.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend.internal". Scanning dependencies of target ost_geom_headers make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build [ 0%] Built target subst_ost_config make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/export_helper/vector.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/pymod/./ialign.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./ialign.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/site_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./def.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/init_inspector.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/init_inspector.py [ 0%] Built target actions make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/split_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/depend.internal". Scanning dependencies of target ost_base_headers [ 0%] Built target ost_mol_alg_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/export_helper/generic_property_def.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend.internal". make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color= Scanning dependencies of target ost_base_pymod make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/pymod/./settings.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./settings.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./exc.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/inspector_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/inspector_widget.py [ 0%] Built target ost_bindings_pymod cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/warning_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./dllexport.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/pymod/./stutil.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./stutil.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/map_level_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/map_level_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./geom.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/pymod/./table.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/depend.internal". Scanning dependencies of target ost_info_headers Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend.internal". Scanning dependencies of target ost_seq_headers make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./version.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/preset.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/share/icons/refresh.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/pymod/./table_selector.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table_selector.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat2.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/remote.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/remote.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat3.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/pymod/./xmlrunner.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./xmlrunner.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh [ 0%] Built target ost_config_headers make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/test_utils/compare_files.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/pymod/./testutils.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./testutils.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_list_model.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_list_model.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh [ 0%] Built target scene_icons make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat4.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./generic_property.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/__init__.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend.internal". Scanning dependencies of target ost_mol_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./integrity_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/preset_info_handler.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_info_handler.py make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/pointer_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend.internal". Scanning dependencies of target ost_bindings_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec2.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./sequence_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/src/./wrap_tmalign.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_item.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/preset_list_model.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_list_model.py [ 0%] Built target ost_base_pymod make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./invalid_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec3.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./sequence_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend.internal". Scanning dependencies of target ost_seq_alg_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./ptr_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./alignment_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec4.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./alignment_opts.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./clip_alignment.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/preset_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_path.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh [ 0%] Built target ost_bindings_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./log.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./sequence_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat2_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./conservation.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_set.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/render_mode_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_mode_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./aligned_region.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat3_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/render_op.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_op.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./log_sink.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat4_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./contact_prediction_score.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/render_options_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_options_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./aligned_column.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend.internal". Scanning dependencies of target ost_conop_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_verbose_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./conop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/scene_observer_impl.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_observer_impl.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./profile.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./circular_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./distance_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./item_type.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./aligned_column_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/scene_selection_helper.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_selection_helper.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./invalid_sequence.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./processor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./constants.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./geom_info_conversion.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./entropy.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./dyn_cast.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/simple_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/simple_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./amino_acids.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./global_align.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./views_from_sequences.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./item_type_cast.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/sline_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/sline_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite2.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./ins_del.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./stdint.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./diag.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./profile_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite3.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/toolbar_options_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/toolbar_options_widget.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./local_align.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/trace_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/trace_widget.py [ 0%] Built target ost_info_headers make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./stdint_msc.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./model_check.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/tube_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/tube_widget.py Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/depend.internal". Scanning dependencies of target ost_db_headers make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./sqlite_wrap.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite2_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh [ 0%] Built target ost_seq_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/uniform_color_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/uniform_color_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./range.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./heuristic.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./sqlite_conv.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/visibility_op.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/visibility_op.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite3_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend.internal". Scanning dependencies of target ost_img_headers make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/line_trace_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/line_trace_widget.py make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./units.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./compound.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./semiglobal_align.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./linear_indexer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./aligned_cuboid.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./sequence_identity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./message.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/dispatch.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec_mat_predicates.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./compound_lib.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./paged_array.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./paged_array.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/wireframe_widget.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/wireframe_widget.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./sequence_similarity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./platform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./quat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./binary_container.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/query_editor.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/query_editor.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./rule_based.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./extract_data_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./variance_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./string_ref.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./point_cloud.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./minimal_compound_lib.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh [ 0%] Built target ost_gui_scene_pymod [ 0%] Built target ost_db_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./compound_lib_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./pod_vector.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./fixed_string.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./ring_finder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_def.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh [ 0%] Built target ost_geom_headers make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend.internal". Scanning dependencies of target ost_img_alg_headers make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color= make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./anisotropic.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/depend.internal". Scanning dependencies of target ost_io_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./tri_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh [ 0%] Built target ost_conop_headers make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend.internal". Scanning dependencies of target ost_mol_alg_headers make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./auto_correlate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend.internal". make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./svd_superpose.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh Scanning dependencies of target ost_gfx_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/star_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./hmm_score.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./boost_filesystem_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./clear.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./clip_min_max.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./sec_structure_segments.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh [ 0%] Built target ost_base_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./conjugate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh [ 0%] Built target ost_seq_alg_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/mmcif_info.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./atom_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./convolute.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend.internal". Scanning dependencies of target ost_gui_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/io_profile.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./atom_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./correlate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./distance_test_common.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/dcd_io.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./atom_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/depend.internal". Scanning dependencies of target ost_config cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./cross_correlate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_spec.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./density_slice.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./superpose_frames.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh [ 0%] Built target ost_config make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./dft.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_octree.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./filter_clashes.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./bond_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/index.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fft.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/depend.internal". cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./construct_cbeta.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./bond_table.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/selection_tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./clash_score.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/measure_tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fftw_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./trajectory_analysis.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/value_holder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_option.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fill.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./structure_analysis.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh Scanning dependencies of target ost_geom make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/pdb_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./algorithm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./filter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/openstructure-2.2.0/modules/geom/src/mat2.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./circle_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./pdbize.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_type.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fourier_filters.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./composite_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/manipulator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chem_class.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data_algorithm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/pdb_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chem_type.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./contact_overlap.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./gaussian.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data_types.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./domain_find.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/mouse_event.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/sdf_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./coord_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./gaussian_laplacian.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/map_tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./similarity_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./coord_source.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./debug.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./in_mem_coord_source.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./dllexport.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./coord_frame.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./accessibility.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./histogram.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/save_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./extent_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./editor_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./sec_struct.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./editor_type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./extent_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/load_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./nonstandard.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./line_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./extent.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./mol.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./molck.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/surface_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./local_sigma_threshold.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_factory.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./mask_image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./find_membrane.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/load_surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./entity_to_density.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./negate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./normalizer_factory.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_handle_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh [ 0%] Built target ost_mol_alg_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_observer_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./normalizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/pdb_str.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/openstructure-2.2.0/modules/geom/src/mat3.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm_linear.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_property_mapper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm_log.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/load_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm_od.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_state_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./power_spectrum.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./randomize.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./smooth_mask_image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./stat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./handle_type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/image_format.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./stat_accumulator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./ics_editor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./inverted_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./not_connected_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./stat_min_max.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./property_id.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./threshold.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transcendentals.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_base_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transform_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query_state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./alg_transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./alg_mirror.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./alg_shift.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./discrete_shrink.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./sec_structure.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transformation_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./spatial_organizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transformations.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./normalizer_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./normalizer_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface_builder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fractional_shift.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./null_data.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./observable.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./builder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./paste_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/tiff_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./polar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/jpk_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./peak.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./line_average.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/sequence_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./phase.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./rscrosscorr.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./torsion_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./transfer_connectivity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./physical_units.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./render_pass.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query_view_wrapper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./pixel_sampling.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh [ 0%] Built target ost_img_alg_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./bitmap_io.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./collada_exporter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/openstructure-2.2.0/modules/geom/src/mat4.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./point_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./color.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/profile_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./point.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./entity_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./view_type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/load.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./polygon_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gl_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./progress.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./size.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./xcs_editor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/save.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./spherical_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./bounding_box.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./binary_data_sink.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./io_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./binary_data_source.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./util.cc /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_node_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_node_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh [ 0%] Built target ost_mol_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./value_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_object_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./container_serialization.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./vecmat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/openstructure-2.2.0/modules/geom/src/vec3.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_info_convert.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/button_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./swap_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_object_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/drop_box.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh [ 0%] Built target ost_img_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./io_utils.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./io_exception.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/openstructure-2.2.0/modules/geom/src/vecmat2_op.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./convert.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_prim.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./converting_streams.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./symmetry_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./formatted_line.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/chemdict_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_test_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/star_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/button_box.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./glwin_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/mmcif_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/event_button.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./input.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/mmcif_info.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./prim_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/io_profile.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./scene.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/dcd_io.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./selection.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/side_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./texture.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./vertex_array.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./vertex_array_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./scene_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/pdb_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gl_include.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./glext_include.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/pdb_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./render_mode.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/label_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./material.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/sdf_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/root_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gradient.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/sdf_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gradient_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/save_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/load_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./primitives.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/surface_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./povray_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/load_surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./povray.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/pdb_str.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/messages/message_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./exporter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./exporter_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/messages/log_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/sequence_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gost_exporter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/argand.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/fasta_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/pir_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./map_iso.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./map_slab.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/promod_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/profile_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./map_iso_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/hhm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/pssm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh [ 0%] Built target ost_gfx_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/clustal_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/load.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/openstructure-2.2.0/modules/geom/src/vecmat3_op.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/save.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/load_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_df3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/image_format.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_dx_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_spi_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_situs_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_mrc_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_dat_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/openstructure-2.2.0/modules/geom/src/vecmat4_op.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_ipl_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_jpk_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_png_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_dm3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/openstructure-2.2.0/modules/geom/src/composite2.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_tiff_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/tiff_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_browser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/jpk_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_type_dialog.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_viewer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh [ 1%] Built target ost_io_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./gl_canvas.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/openstructure-2.2.0/modules/geom/src/composite3.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./gl_win.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./scene_menu.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./gosty_app.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./admin.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./main.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./main_area.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./perspective.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./scene_selection.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./main_window.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./thin_splitter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_geom_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/openstructure-2.2.0/modules/geom/src/composite2_op.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_pool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_registry.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_state_saver.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_loader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/openstructure-2.2.0/modules/geom/src/composite3_op.cc make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 1%] Built target ost_gui_headers [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/openstructure-2.2.0/modules/geom/src/quat.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/openstructure-2.2.0/modules/geom/src/transform.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/openstructure-2.2.0/modules/geom/src/aligned_cuboid.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/openstructure-2.2.0/modules/geom/src/point_cloud.cc [ 1%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.2 -o ../../../stage/lib/libost_geom.so.2.2.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/depend.internal". Scanning dependencies of target ost_base make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' Scanning dependencies of target _ost_geom make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /build/openstructure-2.2.0/modules/base/src/generic_property.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/log.cc.o -c /build/openstructure-2.2.0/modules/base/src/log.cc make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /build/openstructure-2.2.0/modules/base/src/log_sink.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/profile.cc.o -c /build/openstructure-2.2.0/modules/base/src/profile.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/units.cc.o -c /build/openstructure-2.2.0/modules/base/src/units.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /build/openstructure-2.2.0/modules/base/src/string_ref.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/openstructure-2.2.0/modules/base/src/platform.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_vec2.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/message.cc.o -c /build/openstructure-2.2.0/modules/base/src/message.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c /build/openstructure-2.2.0/modules/base/src/test_utils/compare_files.cc [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /build/openstructure-2.2.0/modules/base/src/boost_filesystem_helper.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_vecmat2_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_vec3.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_vecmat3_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_vec4.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_vecmat4_op.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/wrap_geom.cc [ 2%] Linking CXX shared library ../../../stage/lib/libost_base.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.2 -o ../../../stage/lib/libost_base.so.2.2.0 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_base.so.2.2 ../../../stage/lib/libost_base.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 2%] Built target ost_base make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/depend.internal". Scanning dependencies of target ost_info make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 2%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_impl.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_vec2.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_vecmat2_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_vec4.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_vec3.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_vecmat3_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_vecmat4_op.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/wrap_geom.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_mat2.cc [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_mat3.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_mat4.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_composite2.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_composite3.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_mat3.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_mat2.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_mat4.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_handle.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_composite2.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_composite2_op.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_composite3.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_composite3_op.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_quat.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/openstructure-2.2.0/modules/geom/pymod/export_transform.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_composite2_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_group.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_group.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_item.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_quat.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_composite3_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_path.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_path.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/geom/pymod/export_transform.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_set.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_set.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_visitor.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /build/openstructure-2.2.0/modules/info/src/geom_info_conversion.cc [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/openstructure-2.2.0/modules/info/src/info_verbose_visitor.cc [ 5%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/geom/_ost_geom.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/geom/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 5%] Built target _ost_geom make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/depend.internal". Scanning dependencies of target _ost_base make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 5%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o [ 5%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o [ 5%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o [ 5%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/openstructure-2.2.0/modules/base/pymod/export_units.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /build/openstructure-2.2.0/modules/base/pymod/wrap_base.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /build/openstructure-2.2.0/modules/base/pymod/export_logger.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/openstructure-2.2.0/modules/base/pymod/export_range.cc [ 5%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.2 -o ../../../stage/lib/libost_info.so.2.2.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_info.so.2.2 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 5%] Built target ost_info make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color= make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/depend.internal". Scanning dependencies of target ost_img make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 5%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o [ 5%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o [ 5%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/circle_mask.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/data_algorithm.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/composite_mask.cc Scanning dependencies of target ost_mol make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 5%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/atom_base.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/data_observer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/base/pymod/export_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/base/pymod/wrap_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/base/pymod/export_range.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/data.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/extent_iterator.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/base/pymod/export_units.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/atom_handle.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/extent_mask.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/atom_view.cc [ 6%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/bond_handle.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/extent.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/image_factory.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/image_handle.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/chain_base.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/image_impl.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/chain_handle.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/image_list.cc [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/chain_view.cc [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/inverted_mask.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/mol/base/src/chain_view.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/chain_type.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/map.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/map.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/mask_base.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/coord_frame.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/mask_op.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/mask.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/observable.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/observable.cc [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/coord_group.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/paste_impl.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/peak.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/peak.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/phase.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/phase.cc [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/physical_units.cc In file included from /usr/include/boost/bind.hpp:29, from /build/openstructure-2.2.0/modules/mol/base/src/chain_view.cc:21: /usr/include/boost/bind/bind.hpp: In function 'boost::_bi::bind_t, typename boost::_bi::add_value::type> > boost::_bi::operator==(const boost::_bi::bind_t&, A2) [with R = const ost::mol::ResNum&; F = boost::_mfi::cmf0; L = boost::_bi::list1 >; A2 = ost::mol::ResNum]': /usr/include/boost/bind/bind.hpp:1777:1: note: parameter passing for argument of type 'ost::mol::ResNum' changed in GCC 9.1 1777 | BOOST_BIND_OPERATOR( ==, equal ) | ^~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/pixel_sampling.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point_list.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/point_list.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/editor_base.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/point.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/entity_base.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/polygon_mask.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/progress.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/progress.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/size.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/size.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/spherical_mask.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/mask_info_convert.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/image_state/index.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/entity_handle.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.cc [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/entity_observer.cc [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/entity_property_mapper.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/entity_view.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/mol/base/src/entity_view.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/entity_visitor.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/ics_editor.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/not_connected_error.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/property_id.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/query.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/query_error.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/query_state.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/residue_base.cc [ 12%] Linking CXX shared library ../../../../stage/lib/libost_img.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.2 -o ../../../../stage/lib/libost_img.so.2.2.0 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/residue_handle.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2 ../../../../stage/lib/libost_img.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 14%] Built target ost_img make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend.internal". Scanning dependencies of target ost_img_alg make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 14%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/anisotropic.cc [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/residue_view.cc [ 14%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/_ost_base.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/mol/base/src/residue_view.cc:22: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/base/pymod/settings.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/base/pymod/stutil.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/base/pymod/table.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/base/pymod/table_selector.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/base/pymod/xmlrunner.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/base/pymod/testutils.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 14%] Built target _ost_base make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/surface_builder.cc make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/info/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/depend.internal". Scanning dependencies of target _ost_info make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 15%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/openstructure-2.2.0/modules/info/pymod/wrap_info.cc [ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/auto_correlate.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/surface_handle.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/transfer_connectivity.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/torsion_handle.cc [ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/convolute.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/query_view_wrapper.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/info/pymod/wrap_info.cc:27: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/correlate.cc /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/view_op.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/view_op.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/coord_source.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/in_mem_coord_source.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/bounding_box.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/xcs_editor.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/cross_correlate.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/density_slice.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.cc In file included from /usr/include/boost/bind.hpp:29, from /build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc:26: /usr/include/boost/bind/bind.hpp: In function 'boost::_bi::bind_t, typename boost::_bi::add_value::type> > boost::_bi::operator==(const boost::_bi::bind_t&, A2) [with R = const ost::mol::ResNum&; F = boost::_mfi::cmf0; L = boost::_bi::list1 >; A2 = ost::mol::ResNum]': /usr/include/boost/bind/bind.hpp:1777:1: note: parameter passing for argument of type 'ost::mol::ResNum' changed in GCC 9.1 1777 | BOOST_BIND_OPERATOR( ==, equal ) | ^~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/dft.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.cc [ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/fft.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.cc [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.cc [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/fourier_filters.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/gaussian.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log_sink.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:25, from /build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/gaussian_gradient_magnitude.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/gaussian_laplacian.cc [ 19%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/highest_peak_search_3d.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/histogram.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/line_iterator.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/local_sigma_threshold.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/mask_image.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/normalizer.cc [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/normalizer_factory.cc [ 19%] Linking CXX shared library ../../../../stage/lib/libost_mol.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.2 -o ../../../../stage/lib/libost_mol.so.2.2.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2 ../../../../stage/lib/libost_mol.so [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/norm_linear.cc [ 20%] Built target ost_mol make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/depend.internal". Scanning dependencies of target ost_seq make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/norm_log.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/norm_od.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/power_spectrum.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/randomize.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/smooth_mask_image.cc [ 20%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/info/_ost_info.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/info/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 20%] Built target _ost_info make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend.internal". Scanning dependencies of target _ost_mol make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 20%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_atom.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/stat.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/stat_min_max.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/alg_transform.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/alg_mirror.cc [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/alg_shift.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/threshold.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_atom.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/discrete_shrink.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/transformation_base.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/transformations.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/fractional_shift.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/sequence_handle.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/aligned_region.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/polar.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/rscrosscorr.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/aligned_column.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/sequence_list.cc [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/openstructure-2.2.0/modules/img/alg/src/line_average.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/alignment_handle.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/sequence_op.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/seq/base/src/sequence_op.cc:22: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/views_from_sequences.cc [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/openstructure-2.2.0/modules/seq/base/src/profile_handle.cc [ 23%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_atom_view.cc [ 23%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_bond.cc make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend.internal". Scanning dependencies of target _ost_img make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 23%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_data.cc [ 24%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_data_algorithm.cc [ 24%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.2 -o ../../../../stage/lib/libost_img_alg.so.2.2.0 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2 ../../../../stage/lib/libost_img_alg.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 24%] Built target ost_img_alg [ 24%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_extent.cc [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_chain.cc [ 24%] Linking CXX shared library ../../../../stage/lib/libost_seq.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.2 -o ../../../../stage/lib/libost_seq.so.2.2.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2 ../../../../stage/lib/libost_seq.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 24%] Built target ost_seq make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/depend.internal". Scanning dependencies of target ost_bindings make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 24%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/c++ -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /build/openstructure-2.2.0/modules/bindings/src/wrap_tmalign.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_atom_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_bond.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_data.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_data_algorithm.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_extent.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_chain.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_image_handle.cc [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_chain_view.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_peak.cc [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_group.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_phase.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_image_handle.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_chain_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_peak.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Linking CXX shared library ../../../stage/lib/libost_bindings.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.2 -o ../../../stage/lib/libost_bindings.so.2.2.0 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.2.0 ../../../stage/lib/libost_bindings.so.2.2 ../../../stage/lib/libost_bindings.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 25%] Built target ost_bindings make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend.internal". Scanning dependencies of target ost_seq_alg make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/clip_alignment.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_group.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_phase.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/conservation.cc make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/depend.internal". Scanning dependencies of target ost_db make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /build/openstructure-2.2.0/modules/db/src/sqlite_wrap.cc [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_point.cc [ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/openstructure-2.2.0/modules/db/src/linear_indexer.cc [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_frame.cc [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_editors.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/contact_prediction_score.cc [ 26%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /build/openstructure-2.2.0/modules/db/src/binary_container.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_point.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_frame.cc:24: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_editors.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_entity.cc [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_view.cc [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_property_id.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/contact_weight_matrix.cc [ 26%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /build/openstructure-2.2.0/modules/db/src/extract_data_helper.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/distance_map.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_property_id.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_query.cc [ 26%] Linking CXX shared library ../../../stage/lib/libost_db.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.2 -o ../../../stage/lib/libost_db.so.2.2.0 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.2.0 ../../../stage/lib/libost_db.so.2.2 ../../../stage/lib/libost_db.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 26%] Built target ost_db make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/depend.internal". Scanning dependencies of target ost_conop make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/processor.cc.o -c /build/openstructure-2.2.0/modules/conop/src/processor.cc [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_residue.cc [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/entropy.cc [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_progress.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_query.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/global_align.cc [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_residue_view.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_residue.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /build/openstructure-2.2.0/modules/conop/src/amino_acids.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_progress.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_surface.cc [ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_raster_image.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_residue_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/ins_del.cc [ 28%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/conop.cc.o -c /build/openstructure-2.2.0/modules/conop/src/conop.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/local_align.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_raster_image.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_bounding_box.cc [ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_size.cc [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c /build/openstructure-2.2.0/modules/conop/src/minimal_compound_lib.cc [ 30%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/merge_pairwise_alignments.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_bounding_box.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_size.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_query_view_wrapper.cc [ 30%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/pair_subst_weight_matrix.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_torsion.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_visitor.cc [ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_mask.cc [ 30%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/semiglobal_align.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_query_view_wrapper.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_torsion.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_visitor.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_mask.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/sequence_identity.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/wrap_mol.cc [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_property_mapper.cc [ 30%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/sequence_similarity.cc [ 30%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/subst_weight_matrix.cc [ 32%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_image_list.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/wrap_mol.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/variance_map.cc [ 32%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/hmm_pseudo_counts.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_property_mapper.cc:1: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/src/hmm_score.cc [ 32%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/export_map.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_image_list.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /build/openstructure-2.2.0/modules/img/base/pymod/wrap_img.cc [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /build/openstructure-2.2.0/modules/conop/src/compound_lib_base.cc [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c /build/openstructure-2.2.0/modules/conop/src/heuristic.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/export_map.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/mol/_ost_mol.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/diag.cc.o -c /build/openstructure-2.2.0/modules/conop/src/diag.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/base/pymod/wrap_img.cc:27: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/base/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 32%] Built target _ost_mol make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend.internal". Scanning dependencies of target _ost_seq make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 32%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /build/openstructure-2.2.0/modules/seq/base/pymod/export_sequence.cc [ 33%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.2 -o ../../../../stage/lib/libost_seq_alg.so.2.2.0 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /build/openstructure-2.2.0/modules/conop/src/rule_based.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2 ../../../../stage/lib/libost_seq_alg.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 33%] Built target ost_seq_alg [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /build/openstructure-2.2.0/modules/conop/src/model_check.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound.cc.o -c /build/openstructure-2.2.0/modules/conop/src/compound.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /build/openstructure-2.2.0/modules/conop/src/compound_lib.cc [ 33%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /build/openstructure-2.2.0/modules/conop/src/ring_finder.cc [ 33%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /build/openstructure-2.2.0/modules/seq/base/pymod/export_profile_handle.cc [ 33%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/img/_ost_img.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/seq/base/pymod/export_sequence.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/img/base/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 33%] Built target _ost_img make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend.internal". Scanning dependencies of target _ost_img_alg make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /build/openstructure-2.2.0/modules/img/alg/pymod/wrap_alg.cc [ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /build/openstructure-2.2.0/modules/img/alg/pymod/export_filter.cc [ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /build/openstructure-2.2.0/modules/img/alg/pymod/export_normalizer.cc [ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /build/openstructure-2.2.0/modules/img/alg/pymod/export_transcendentals.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9, from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9, from /build/openstructure-2.2.0/modules/seq/base/pymod/export_profile_handle.cc:24: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /build/openstructure-2.2.0/modules/img/alg/pymod/export_polar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/alg/pymod/wrap_alg.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/alg/pymod/export_filter.cc:27: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/alg/pymod/export_normalizer.cc:27: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/alg/pymod/export_transcendentals.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Linking CXX shared library ../../../stage/lib/libost_conop.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.2 -o ../../../stage/lib/libost_conop.so.2.2.0 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/img/alg/pymod/export_polar.cc:24: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2 ../../../stage/lib/libost_conop.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 33%] Built target ost_conop make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend.internal". Scanning dependencies of target ost_mol_alg make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/svd_superpose.cc [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/clash_score.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/mol/alg/src/svd_superpose.cc:22: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/depend.internal". Scanning dependencies of target ost_gfx make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/bitmap_io.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/exporter.cc [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/sec_structure_segments.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/collada_exporter.cc [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/local_dist_diff_test.cc [ 33%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /build/openstructure-2.2.0/modules/seq/base/pymod/wrap_seq.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color.cc [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/distance_test_common.cc [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/primitives.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/seq/base/pymod/wrap_seq.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/distance_rmsd_test.cc [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/superpose_frames.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/entity.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/symmetry_node.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/gfx_node.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/gfx/src/gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/filter_clashes.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/construct_cbeta.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/gfx_object.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/gfx_prim.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/trajectory_analysis.cc [ 35%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/img/alg/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 35%] Built target _ost_img_alg [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/structure_analysis.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/consistency_checks.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/gfx_test_object.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/pdbize.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/adjacency_bitmap.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/contact_overlap.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/domain_find.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/input.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/input.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/prim_list.cc [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/similarity_matrix.cc [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/scene.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/accessibility.cc [ 37%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/seq/_ost_seq.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/gfx/src/scene.cc:33: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/seq/base/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 37%] Built target _ost_seq make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend.internal". Scanning dependencies of target _ost_bindings make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 37%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /build/openstructure-2.2.0/modules/bindings/pymod/export_tmalign.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/sec_struct.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/nonstandard.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/molck.cc [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/selection.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/bindings/pymod/export_tmalign.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/find_membrane.cc [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/entity_to_density.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/surface.cc [ 38%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /build/openstructure-2.2.0/modules/bindings/pymod/wrap_bindings.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/gradient.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/gradient_manager.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/vertex_array.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/bindings/pymod/wrap_bindings.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/vertex_array_helper.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/lga.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/hbplus.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)" [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/material.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/material.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/msms.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)" make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/tmtools.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)" Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/depend.internal". [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/povray.cc Scanning dependencies of target _ost_db make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 38%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /build/openstructure-2.2.0/modules/db/pymod/export_linear_db.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/dssp.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/clustalw.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/utils.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/naccess.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/hhblits.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)" [ 38%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /build/openstructure-2.2.0/modules/db/pymod/wrap_db.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/hhblits2.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/hhblits3.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/blast.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/cadscore.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/kclust.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/bindings/pymod/ialign.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 38%] Built target _ost_bindings make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend.internal". Scanning dependencies of target _ost_seq_alg make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 38%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/pymod/wrap_seq_alg.cc /build/openstructure-2.2.0/modules/gfx/src/vertex_array.cc:1311:8: warning: 'geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)' defined but not used [-Wunused-function] 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s) | ^~~~~~~~~~~~~~~~ /build/openstructure-2.2.0/modules/gfx/src/vertex_array.cc:1239:8: warning: 'void ost::gfx::{anonymous}::render_aalines(ost::gfx::{anonymous}::AALineList&, float, float)' defined but not used [-Wunused-function] 1239 | void render_aalines(AALineList& line_list, float w, float r) | ^~~~~~~~~~~~~~ [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/gost_exporter.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/texture.cc [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/db/pymod/export_linear_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/seq/alg/pymod/wrap_seq_alg.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/db/pymod/wrap_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.cc [ 39%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/atom_scattering_properties.txt /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/stereo_chemical_props.txt /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.2 -o ../../../../stage/lib/libost_mol_alg.so.2.2.0 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libsqlite3.so [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2 ../../../../stage/lib/libost_mol_alg.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 39%] Built target ost_mol_alg make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/depend.internal". Scanning dependencies of target ost_io make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /build/openstructure-2.2.0/modules/io/src/io_manager.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.cc [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.cc [ 41%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/db/_ost_db.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1 [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.cc /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/db/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 42%] Built target _ost_db [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/convert.cc.o -c /build/openstructure-2.2.0/modules/io/src/convert.cc /build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function 'static float ost::io::{anonymous}::ConvertHelper<1, 2, float>::Convert(const float&)': /build/openstructure-2.2.0/modules/io/src/convert.cc:346:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 346 | reinterpret_cast(&result)[0]=reinterpret_cast(&tmp)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-2.2.0/modules/io/src/convert.cc:347:52: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | reinterpret_cast(&result)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function 'static void ost::io::{anonymous}::ConvertHelper<1, 2, float>::ConvertIP(float*)': /build/openstructure-2.2.0/modules/io/src/convert.cc:355:50: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 355 | reinterpret_cast(value)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function 'static float ost::io::{anonymous}::ConvertHelper<2, 1, float>::Convert(const float&)': /build/openstructure-2.2.0/modules/io/src/convert.cc:367:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 367 | reinterpret_cast(&tmp)[0]=reinterpret_cast(&value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function 'static void ost::io::{anonymous}::ConvertHelper<2, 1, float>::ConvertIP(float*)': /build/openstructure-2.2.0/modules/io/src/convert.cc:375:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 375 | reinterpret_cast(&tmp)[0]=reinterpret_cast(value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /build/openstructure-2.2.0/modules/io/src/io_utils.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.cc [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.cc [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.cc [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/map_iso.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/map_slab.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.cc [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.cc [ 44%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_o.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/map_octree.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/seq/alg/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/seq/alg/pymod/mat.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/seq/alg/pymod/renumber.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 44%] Built target _ost_seq_alg make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend.internal". Scanning dependencies of target _ost_conop make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 44%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/wrap_conop.cc [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /build/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.cc [ 44%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_compound.cc [ 46%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_processor.cc [ 46%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_heuristic.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/wrap_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_amino_acids.cc [ 46%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_conop.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_processor.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_diag.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_compound.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_heuristic.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_amino_acids.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_diag.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Linking CXX shared library ../../../stage/lib/libost_gfx.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/test_texture.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/textures/test_texture.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/glyph_texture.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/textures/glyph_texture.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.2 -o ../../../stage/lib/libost_gfx.so.2.2.0 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_gfx.so.2.2 ../../../stage/lib/libost_gfx.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 46%] Built target ost_gfx [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/pdb_reader.cc [ 46%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_rule_based.cc [ 46%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /build/openstructure-2.2.0/modules/conop/pymod/export_ring_finder.cc [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/pdb_writer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_rule_based.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/conop/pymod/export_ring_finder.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/sdf_reader.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/save_entity.cc [ 47%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/conop/_ost_conop.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/conop/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/conop/pymod/cleanup.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 47%] Built target _ost_conop make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend.internal". Scanning dependencies of target _ost_gfx make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 47%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/wrap_gfx.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/load_entity.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/format/alt_sstream.hpp:22, from /usr/include/boost/format/internals.hpp:24, from /usr/include/boost/format.hpp:38, from /build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh:33, from /build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.cc:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/load_surface.cc [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/wrap_gfx.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/io_profile.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/dcd_io.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/star_parser.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.cc [ 48%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_scene.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/mmcif_info.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/pdb_str.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c /build/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_scene.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/load.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/load.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/save.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/save.cc [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/load_map.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.cc [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.cc [ 50%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_node.cc [ 51%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.cc In file included from /usr/include/boost/bind.hpp:30, from /build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.cc:32: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.cc [ 51%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.cc [ 51%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.cc [ 51%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh:32, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/alg_transform.hh:24, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/transform.hh:24, from /build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.cc:24: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_symmetry_node.cc [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.cc [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/image_format.cc [ 52%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /build/openstructure-2.2.0/modules/io/src/img/tiff_util.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_obj.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_entity.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_symmetry_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_surface.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_primitives.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_primlist.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_obj.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_primitives.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_primlist.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_scene_observer.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c 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../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_color.cc [ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_gradient.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_io.so.2.2 ../../../stage/lib/libost_io.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 52%] Built target ost_io make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend.internal". Scanning dependencies of target _ost_mol_alg make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 52%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/wrap_mol_alg.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_scene_observer.cc:1: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_render_options.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_color_ops.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/wrap_mol_alg.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_color.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_glwin_base.cc [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_exporter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_gradient.cc:24: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_color_ops.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_glwin_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_exporter.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_bitmap.cc [ 53%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c /build/openstructure-2.2.0/modules/gfx/pymod/export_map.cc [ 53%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_svd_superpose.cc [ 55%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_clash.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_bitmap.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_trajectory_analysis.cc make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend.internal". Scanning dependencies of target test_mae_standalone make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_mae_standalone.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_svd_superpose.cc:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gfx/pymod/export_map.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/depend.internal". Scanning dependencies of target lddt make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/lddt.dir/lddt.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/src/lddt.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_clash.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_trajectory_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_structure_analysis.cc [ 55%] Linking CXX executable ../../../stage/bin/test_mae_standalone cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Built target test_mae_standalone make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/tools/molck /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/depend.internal". Scanning dependencies of target molck make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/molck.dir/main.cc.o -c /build/openstructure-2.2.0/tools/molck/main.cc [ 55%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_contact_overlap.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_structure_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_accessibility.cc [ 55%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_sec_structure.cc [ 55%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_non_standard.cc [ 55%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/pymod/gradients.xml /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/gradients.xml cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o CMakeFiles/_ost_gfx.dir/export_scene.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o CMakeFiles/_ost_gfx.dir/export_entity.cc.o CMakeFiles/_ost_gfx.dir/export_surface.cc.o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o CMakeFiles/_ost_gfx.dir/export_color.cc.o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o CMakeFiles/_ost_gfx.dir/export_map.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_contact_overlap.cc:1: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Linking CXX executable ../../../../stage/bin/lddt cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lddt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Built target lddt make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/depend.internal". Scanning dependencies of target chemdict_tool make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /build/openstructure-2.2.0/modules/conop/src/chemdict_tool.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_accessibility.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gfx/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gfx/pymod/py_gfx_obj.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./py_gfx_obj.pyc\",\"py_gfx_obj.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Built target _ost_gfx make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 56%] Generating data_viewer/moc_pointlist_overlay_base.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters [ 56%] Generating moc_file_browser.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters [ 56%] Generating moc_file_type_dialog.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters [ 56%] Generating moc_file_viewer.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters [ 56%] Generating moc_gl_canvas.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters [ 57%] Generating moc_gl_win.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters [ 57%] Generating moc_scene_menu.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters [ 57%] Generating moc_gosty_app.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters [ 57%] Generating moc_main.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp_parameters [ 57%] Generating moc_main_area.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters [ 57%] Generating moc_perspective.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters [ 57%] Generating moc_dock_widget.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters [ 57%] Generating moc_main_window.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters [ 57%] Generating moc_scene_selection.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters [ 57%] Generating moc_widget.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget.cpp_parameters [ 58%] Generating moc_widget_geom_handler.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters [ 58%] Generating moc_widget_pool.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters [ 58%] Generating messages/moc_message_widget.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters [ 58%] Generating messages/moc_message_box_widget.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters [ 58%] Generating messages/moc_log_reader.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters [ 58%] Generating sequence_viewer/moc_align_properties_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_sec_structure.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_non_standard.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Generating sequence_viewer/moc_background_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters [ 58%] Generating sequence_viewer/moc_base_row.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters [ 58%] Generating sequence_viewer/moc_conservation_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp_parameters [ 58%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_molck.cc [ 58%] Generating sequence_viewer/moc_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp_parameters [ 58%] Generating sequence_viewer/moc_secstr_row.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp_parameters [ 60%] Generating sequence_viewer/moc_seq_secstr_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp_parameters [ 60%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_membrane.cc [ 60%] Generating sequence_viewer/moc_seq_selection_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters [ 60%] Linking CXX executable ../../stage/bin/molck cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.2.0 ../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../stage/lib/libost_seq_alg.so.2.2.0 ../../stage/lib/libost_conop.so.2.2.0 ../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.2.0 ../../stage/lib/libost_mol.so.2.2.0 ../../stage/lib/libost_img_alg.so.2.2.0 ../../stage/lib/libost_img.so.2.2.0 ../../stage/lib/libost_info.so.2.2.0 ../../stage/lib/libost_base.so.2.2.0 ../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so [ 60%] Generating sequence_viewer/moc_seq_text_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 60%] Built target molck [ 60%] Generating sequence_viewer/moc_sequence_delegate.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters [ 60%] Generating sequence_viewer/moc_sequence_model.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters [ 60%] Generating sequence_viewer/moc_sequence_row.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters [ 60%] Generating sequence_viewer/moc_sequence_search_bar.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters [ 60%] Generating sequence_viewer/moc_sequence_table_view.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters [ 60%] Generating sequence_viewer/moc_sequence_viewer.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters [ 60%] Generating sequence_viewer/moc_tick_painter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters [ 61%] Generating sequence_viewer/moc_title_row.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters [ 61%] Linking CXX executable ../../../stage/bin/chemdict_tool cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_molck.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Generating sequence_viewer/moc_alignment_view_object.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters [ 61%] Generating sequence_viewer/moc_base_view_object.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters [ 61%] Generating sequence_viewer/moc_sequence_view_object.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters [ 61%] Generating python_shell/moc_main_thread_runner.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters [ 61%] Generating python_shell/moc_completer_base.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters [ 61%] Generating python_shell/moc_gutter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters [ 61%] Generating python_shell/moc_output_redirector.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters [ 61%] Generating python_shell/moc_path_completer.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters [ 61%] Generating python_shell/moc_python_completer.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters [ 62%] Generating python_shell/moc_python_interpreter.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters [ 62%] Generating python_shell/moc_python_interpreter_worker.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters [ 62%] Generating python_shell/moc_python_namespace_tree_model.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters [ 62%] Generating python_shell/moc_python_shell.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters [ 62%] Generating python_shell/moc_python_shell_widget.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters [ 62%] Generating python_shell/moc_text_logger.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters [ 62%] Generating python_shell/moc_state_machine.cpp make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters [ 62%] Built target chemdict_tool [ 62%] Generating python_shell/moc_transition.cpp [ 62%] Generating python_shell/moc_state.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters [ 62%] Generating python_shell/moc_transition_guard.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters [ 62%] Generating panels/moc_button_bar.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters [ 64%] Generating panels/moc_drop_box.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters [ 64%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/pymod/export_entity_to_density.cc [ 64%] Generating panels/moc_panel_bar.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters [ 64%] Generating panels/moc_panel_manager.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters [ 64%] Generating panels/moc_bottom_bar.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters [ 64%] Generating panels/moc_button_box.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters [ 64%] Generating panels/moc_event_button.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters [ 64%] Generating panels/moc_panel_widget_container.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters [ 64%] Generating panels/moc_panel_bar_widget_holder.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters [ 64%] Generating panels/moc_side_bar.cpp [ 64%] Generating panels/moc_splitter_panel_bar.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters [ 64%] Generating scene_win/moc_context_menu.cpp [ 65%] Generating panels/moc_tabbed_panel_bar.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters [ 65%] Generating scene_win/moc_current_selection_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters [ 65%] Generating scene_win/moc_custom_part_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters [ 65%] Generating scene_win/moc_gfx_scene_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters [ 65%] Generating scene_win/moc_label_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters [ 65%] Generating scene_win/moc_entity_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters [ 65%] Generating scene_win/moc_entity_part_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp_parameters [ 65%] Generating scene_win/moc_render_mode_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters [ 65%] Generating scene_win/moc_render_modes_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters [ 66%] Generating scene_win/moc_root_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters [ 66%] Generating scene_win/moc_scene_node.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters [ 66%] Generating scene_win/moc_scene_win.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_membrane.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Generating scene_win/moc_scene_win_model.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters [ 66%] Generating tools/moc_tool.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters [ 66%] Generating tools/moc_tool_option_group.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters [ 66%] Generating tools/moc_tool_options.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters [ 66%] Generating tools/moc_tool_bar.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters [ 66%] Generating tools/moc_tool_option.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters [ 66%] Generating tools/moc_tool_manager.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters [ 67%] Generating tools/moc_tool_options_widget.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters [ 67%] Generating tools/moc_measure_tool.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters [ 67%] Generating tools/moc_tool_options_win.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters [ 67%] Generating data_viewer/moc_argand.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters [ 67%] Generating data_viewer/moc_fft_panel.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters [ 67%] Generating data_viewer/moc_info_panel.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters [ 67%] Generating data_viewer/moc_data_viewer.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters [ 67%] Generating data_viewer/moc_overlay_manager_gui.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters [ 67%] Generating data_viewer/moc_data_viewer_panel_base.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters [ 67%] Generating data_viewer/moc_null_overlay.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters [ 67%] Generating data_viewer/moc_overlay_base.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/depend.internal". Scanning dependencies of target ost_gui make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_browser.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_viewer.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/mol/alg/pymod/export_entity_to_density.cc:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_win.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_menu.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_area.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_perspective.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_selection.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget.cpp [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:38:77: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gosty_app.hh:28, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:35, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_pool.cpp [ 70%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../../stage/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libsqlite3.so [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/views.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./views.pyc\",\"views.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/superpose.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./superpose.pyc\",\"superpose.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/qsscoring.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./qsscoring.pyc\",\"qsscoring.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/trajectory_analysis.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./trajectory_analysis.pyc\",\"trajectory_analysis.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/structure_analysis.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./structure_analysis.pyc\",\"structure_analysis.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/helix_kinks.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./helix_kinks.pyc\",\"helix_kinks.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/mol/alg/pymod/hbond.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./hbond.pyc\",\"hbond.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 70%] Built target _ost_mol_alg make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/depend.internal". Scanning dependencies of target _ost_io make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 70%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /build/openstructure-2.2.0/modules/io/pymod/wrap_io.cc [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/io/pymod/wrap_io.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp [ 73%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c /build/openstructure-2.2.0/modules/io/pymod/export_pdb_io.cc [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/io/pymod/export_pdb_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /build/openstructure-2.2.0/modules/io/pymod/export_mmcif_io.cc [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/io/pymod/export_mmcif_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp [ 73%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c /build/openstructure-2.2.0/modules/io/pymod/export_map_io.cc [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/io/pymod/export_map_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition_guard.hh:24, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp:10: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong 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/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/thin_splitter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/thin_splitter.cc In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/perspective.cc.o -c /build/openstructure-2.2.0/modules/gui/src/perspective.cc [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c /build/openstructure-2.2.0/modules/gui/src/widget_registry.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_browser.cc.o -c /build/openstructure-2.2.0/modules/gui/src/file_browser.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c /build/openstructure-2.2.0/modules/gui/src/file_type_dialog.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_viewer.cc.o -c /build/openstructure-2.2.0/modules/gui/src/file_viewer.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main.cc.o -c /build/openstructure-2.2.0/modules/gui/src/main.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gl_canvas.cc.o -c /build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c /build/openstructure-2.2.0/modules/gui/src/dock_widget.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main_window.cc.o -c /build/openstructure-2.2.0/modules/gui/src/main_window.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/file_browser.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-2.2.0/modules/gui/src/dock_widget.cc:25: /build/openstructure-2.2.0/modules/gui/src/dock_widget.hh:38:77: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /build/openstructure-2.2.0/modules/gui/src/dock_widget.hh:31, from /build/openstructure-2.2.0/modules/gui/src/dock_widget.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c /build/openstructure-2.2.0/modules/gui/src/gl_win.cc [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_menu.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_menu.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/main.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /build/openstructure-2.2.0/modules/gui/src/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-2.2.0/modules/gui/src/main_window.hh:35, from /build/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /build/openstructure-2.2.0/modules/gui/src/main_window.cc:26: /build/openstructure-2.2.0/modules/gui/src/dock_widget.hh:38:77: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-2.2.0/modules/gui/src/main_window.hh:35, from /build/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-2.2.0/modules/gui/src/main_window.cc: In member function 'void ost::gui::MainWindow::AddDockWidget(QWidget*, const QString&, bool, int)': /build/openstructure-2.2.0/modules/gui/src/main_window.cc:60:47: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 60 | DockWidget* dock = new DockWidget(name, this); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-2.2.0/modules/gui/src/main_window.hh:35, from /build/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-2.2.0/modules/gui/src/main_window.cc:71:52: warning: 'QVariant qVariantFromValue(const T&) [with T = QDockWidget*]' is deprecated: Use QVariant::fromValue() instead. [-Wdeprecated-declarations] 71 | act->setData(qVariantFromValue((QDockWidget*)dock)); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qaction.h:47, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmenu.h:47, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMenu:1, from /build/openstructure-2.2.0/modules/gui/src/main_window.hh:36, from /build/openstructure-2.2.0/modules/gui/src/main_window.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qvariant.h:530:17: note: declared here 530 | inline QVariant qVariantFromValue(const T &t) | ^~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget.cc.o -c /build/openstructure-2.2.0/modules/gui/src/widget.cc /build/openstructure-2.2.0/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(QWidget*)': /build/openstructure-2.2.0/modules/gui/src/file_browser.cc:64:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 64 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-2.2.0/modules/gui/src/file_browser.cc:55: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ /build/openstructure-2.2.0/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)': /build/openstructure-2.2.0/modules/gui/src/file_browser.cc:104:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 104 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-2.2.0/modules/gui/src/file_browser.cc:55: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ /build/openstructure-2.2.0/modules/gui/src/main.cc: In static member function 'static QSize ost::gui::GostyMainWindow::GetDefaultSize()': /build/openstructure-2.2.0/modules/gui/src/main.cc:59:65: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 59 | QRect desktop_geom=QApplication::desktop()->availableGeometry(); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/openstructure-2.2.0/modules/gui/src/main.cc:35: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/smart_ptr/weak_ptr.hpp:17, from /usr/include/boost/smart_ptr/enable_shared_from_this.hpp:16, from /usr/include/boost/enable_shared_from_this.hpp:16, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:28, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh:29, from /build/openstructure-2.2.0/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:22: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/admin.cc.o -c /build/openstructure-2.2.0/modules/gui/src/admin.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_pool.cc.o -c /build/openstructure-2.2.0/modules/gui/src/widget_pool.cc /build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc: In member function 'virtual void ost::gui::GLCanvas::wheelEvent(QWheelEvent*)': /build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:488:51: warning: 'int QWheelEvent::delta() const' is deprecated: Use angleDelta() [-Wdeprecated-declarations] 488 | 0.2*static_cast(-event->delta())); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QMouseEvent:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:25, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /build/openstructure-2.2.0/modules/gui/src/gl_canvas.hh:23, from /build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:22: /usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/scene_menu.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -c /build/openstructure-2.2.0/modules/gui/src/messages/message_widget.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c /build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c /build/openstructure-2.2.0/modules/gui/src/messages/log_reader.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/messages/message_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.cc [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.cc /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc: In member function 'virtual int ost::gui::SequenceTableView::sizeHintForColumn(int) const': /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc:480:39: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 480 | return this->fontMetrics().width('W'); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/qpainter.h:59, from /usr/include/aarch64-linux-gnu/qt5/QtGui/QPainter:1, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh:30, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh:27, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh:27, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh:35, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh:28, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:29, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.cc /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc: In member function 'void ost::gui::SequenceViewer::MouseWheelEvent(QWheelEvent*)': /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:298:28: warning: 'int QWheelEvent::delta() const' is deprecated: Use angleDelta() [-Wdeprecated-declarations] 298 | int delta = event->delta(); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:299:26: warning: 'Qt::Orientation QWheelEvent::orientation() const' is deprecated: Use angleDelta() [-Wdeprecated-declarations] 299 | if (event->orientation() == Qt::Vertical) { | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:222:28: note: declared here 222 | inline Qt::Orientation orientation() const { return qt4O; } | ^~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /build/openstructure-2.2.0/modules/gui/src/gosty_app.cc [ 85%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/io/_ost_io.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/io/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/io/pymod/remote.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./remote.pyc\",\"remote.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/io/pymod/repository.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./repository.pyc\",\"repository.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 85%] Built target _ost_io [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main_area.cc.o -c /build/openstructure-2.2.0/modules/gui/src/main_area.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c /build/openstructure-2.2.0/modules/gui/src/widget_state_saver.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_selection.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/modules/gui/src/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/gosty_app.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c /build/openstructure-2.2.0/modules/gui/src/widget_geom_handler.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c /build/openstructure-2.2.0/modules/gui/src/file_loader.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/button_bar.cc [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/drop_box.cc In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/src/gosty_app.cc:33: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/modules/gui/src/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/gosty_app.cc:19: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/button_box.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/panel_manager.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.cc /build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc: In member function 'virtual void ost::gui::EventButton::mouseMoveEvent(QMouseEvent*)': /build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc:50:30: warning: 'Qt::DropAction QDrag::start(Qt::DropActions)' is deprecated: Use QDrag::exec() instead [-Wdeprecated-declarations] 50 | drag->start(Qt::MoveAction); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QDrag:1, from /build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc:22: /usr/include/aarch64-linux-gnu/qt5/QtGui/qdrag.h:79:20: note: declared here 79 | Qt::DropAction start(Qt::DropActions supportedActions = Qt::CopyAction); | ^~~~~ In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/src/scene_selection.cc:35: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/scene_selection.cc:19: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/side_bar.cc [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.cc In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/src/file_loader.cc:52: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/file_loader.cc:19: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool_options.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool_option.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool_manager.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/mouse_event.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/manipulator.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.cc [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/selection_tool.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/measure_tool.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/tools/manipulator.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.cc /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc: In member function 'void ost::gui::OutputRedirector::Write(const String&)': /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:42:23: warning: 'int QTime::elapsed() const' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 42 | if(timer_.elapsed()>1000){ | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:46:22: warning: 'int QTime::restart()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 46 | timer_.restart(); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:236:54: note: declared here 236 | QT_DEPRECATED_X("Use QElapsedTimer instead") int restart(); | ^~~~~~~ /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:52:18: warning: 'void QTime::start()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 52 | timer_.start(); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.cc:22: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.cc /build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc: In constructor 'ost::gui::OstDirModel::OstDirModel(QObject*)': /build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc:31:18: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 31 | QDirModel(parent) | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh:26, from /build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc:23: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.cc [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.cc [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.hh:25, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.cc:24: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/string_literal_positions.cc /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc: In member function 'virtual Qt::ItemFlags ost::gui::PythonNamespaceTreeModel::flags(const QModelIndex&) const': /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:110:12: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::ItemFlag; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 110 | return 0; | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/state.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/state.cc /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc: In constructor 'ost::gui::PythonShellWidget::PythonShellWidget(QWidget*)': /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:79:38: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:79:39: warning: 'void QPlainTextEdit::setTabStopWidth(int)' is deprecated [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc: In member function 'void ost::gui::PythonShellWidget::SetTabWidth(int)': /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:537:47: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:537:48: warning: 'void QPlainTextEdit::setTabStopWidth(int)' is deprecated [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/transition.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -c /build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.cc [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh:23, from /build/openstructure-2.2.0/modules/gui/src/python_shell/state.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28, from /build/openstructure-2.2.0/modules/gui/src/python_shell/transition.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh:24, from /build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/label_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/root_node.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c /build/openstructure-2.2.0/modules/gui/src/tools/map_tool.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/argand.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:23: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc: In member function 'virtual QMimeData* ost::gui::SceneWinModel::mimeData(const QModelIndexList&) const': /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc:231:31: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 231 | encoded_data.append(text); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QObject:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:24, from /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh:34, from /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc:23: /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:1507:20: note: declared here 1507 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.cc /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc: In member function 'void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)': /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:117:39: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 117 | model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QModelIndex:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34, from /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:26: /usr/include/aarch64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/map_slab.hh:26, from /build/openstructure-2.2.0/modules/gui/src/tools/map_tool.cc:21: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.cc /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function 'virtual void ost::img::gui::DataViewerPanelBase::paintEvent(QPaintEvent*)': /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:440:70: warning: 'static bool QPixmapCache::find(const QString&, QPixmap&)' is deprecated: Use bool find(const QString &, QPixmap *) instead [-Wdeprecated-declarations] 440 | if (update_raster_image_ || ( !QPixmapCache::find(cache_key, pm))) { | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QPixmapCache:1, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:40: /usr/include/aarch64-linux-gnu/qt5/QtGui/qpixmapcache.h:81:17: note: declared here 81 | static bool find(const QString &key, QPixmap &pixmap); | ^~~~ In file included from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:37: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/dock_widget.hh:38:77: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function 'virtual void ost::img::gui::DataViewerPanelBase::wheelEvent(QWheelEvent*)': /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:613:19: warning: 'int QWheelEvent::delta() const' is deprecated: Use angleDelta() [-Wdeprecated-declarations] 613 | if(event->delta()>0) { | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QResizeEvent:1, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:36: /usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ In file included from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:41: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function 'void ost::img::gui::DataViewerPanelBase::draw_pixel_values(QPainter&)': /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1074:62: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1074 | int string_w=painter.fontMetrics().width(value_string); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1090:62: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1090 | int string_w=painter.fontMetrics().width(value_string); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc: In constructor 'ost::img::gui::DataViewer::DataViewer(QWidget*, const ost::img::ImageHandle&, const QString&)': /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:75:14: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 75 | lastmouse_() | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc: In member function 'void ost::img::gui::DataViewer::build(const ost::img::ImageHandle&)': /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:315:55: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 315 | resize(QApplication::desktop()->availableGeometry().adjusted(20,20,-20,-20).size()); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:53: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.cc [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.cc [ 96%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.cc [ 96%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.cc [ 96%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.cc [ 96%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -c /build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.cc [ 96%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o 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../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.2.0 ../../../stage/lib/libost_gui.so.2.2 ../../../stage/lib/libost_gui.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 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@/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty.cpp_parameters Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend.internal". [ 96%] Generating qrc_dngr.cpp cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/rcc --name dngr --output /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/qrc_dngr.cpp /build/openstructure-2.2.0/modules/gui/src/dngr.qrc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/depend.internal". Scanning dependencies of target gosty make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o [ 97%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/gosty.cc.o -c /build/openstructure-2.2.0/modules/gui/src/gosty.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty.cpp [ 97%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/qrc_dngr.cpp Scanning dependencies of target _ost_gui make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/wrap_gui.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_message_widget.cc [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_alignment_view.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_tool.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_tool.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_gl_win.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_py_shell.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gosty.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_message_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/modules/gui/src/gosty.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_tool.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/wrap_gui.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_py_shell.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_alignment_view.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_scene_win.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_sequence_viewer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 98%] Built target gosty [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_perspective.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_sip_handler.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_scene_selection.cc [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_main_area.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_main_area.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_scene_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_sequence_viewer.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:41, from /build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:39: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:24: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_perspective.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_sip_handler.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_main_area.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_panels.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_panels.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_menu_bar.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_file_loader.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_file_viewer.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_widget.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_widget.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_gl_canvas.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_panels.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_menu_bar.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_file_viewer.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:25: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_gl_canvas.cc:19: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/sip_handler.hh:22, from /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:30, from /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_overlay.cc [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /build/openstructure-2.2.0/modules/gui/pymod/export_overlay_manager.cc In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:27: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:27: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:41, from /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26: /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: 'constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:43, from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QWidget:1, from /build/openstructure-2.2.0/modules/gui/pymod/sip_handler.hh:24, from /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:30, from /build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_overlay.cc:26: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/openstructure-2.2.0/modules/gui/pymod/export_overlay_manager.cc:16: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/gui/_ost_gui.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/presets.xml /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/presets.xml cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/icons/color_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/icons/preset_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/preset_icon.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/icons/render_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/render_icon.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/pymod/scene/icons/tool_icon.png /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/tool_icon.png cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gui.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -o ../../../stage/lib/python3.9/dist-packages/ost/gui/_ost_gui.so CMakeFiles/_ost_gui.dir/wrap_gui.cc.o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o CMakeFiles/_ost_gui.dir/export_tool.cc.o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o CMakeFiles/_ost_gui.dir/export_gosty.cc.o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o CMakeFiles/_ost_gui.dir/export_perspective.cc.o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o CMakeFiles/_ost_gui.dir/export_main_area.cc.o CMakeFiles/_ost_gui.dir/export_panels.cc.o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o CMakeFiles/_ost_gui.dir/export_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o CMakeFiles/_ost_gui.dir/export_overlay.cc.o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/color_options_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_options_widget.pyc\",\"color_options_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/color_select_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_select_widget.pyc\",\"color_select_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/combo_options_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/combo_options_widget.pyc\",\"combo_options_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/cpk_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/cpk_widget.pyc\",\"cpk_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/custom_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/custom_widget.pyc\",\"custom_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_editor_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_editor_widget.pyc\",\"gradient_editor_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_info_handler.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_info_handler.pyc\",\"gradient_info_handler.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_list_model.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_list_model.pyc\",\"gradient_list_model.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_preset_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_preset_widget.pyc\",\"gradient_preset_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/hsc_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/hsc_widget.pyc\",\"hsc_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_gradient_info_handler.pyc\",\"immutable_gradient_info_handler.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_preset_info_handler.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_preset_info_handler.pyc\",\"immutable_preset_info_handler.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/init_inspector.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/init_inspector.pyc\",\"init_inspector.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/inspector_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/inspector_widget.pyc\",\"inspector_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/map_level_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/map_level_widget.pyc\",\"map_level_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/preset.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset.pyc\",\"preset.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/remote.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/remote.pyc\",\"remote.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_list_model.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_list_model.pyc\",\"preset_editor_list_model.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_widget.pyc\",\"preset_editor_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_info_handler.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_info_handler.pyc\",\"preset_info_handler.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_list_model.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_list_model.pyc\",\"preset_list_model.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_widget.pyc\",\"preset_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/render_mode_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_mode_widget.pyc\",\"render_mode_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/render_op.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_op.pyc\",\"render_op.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/render_options_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_options_widget.pyc\",\"render_options_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/scene_observer_impl.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_observer_impl.pyc\",\"scene_observer_impl.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/scene_selection_helper.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_selection_helper.pyc\",\"scene_selection_helper.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/simple_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/simple_widget.pyc\",\"simple_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/sline_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/sline_widget.pyc\",\"sline_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/toolbar_options_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/toolbar_options_widget.pyc\",\"toolbar_options_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/trace_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/trace_widget.pyc\",\"trace_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/tube_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/tube_widget.pyc\",\"tube_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/uniform_color_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/uniform_color_widget.pyc\",\"uniform_color_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/visibility_op.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/visibility_op.pyc\",\"visibility_op.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/line_trace_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/line_trace_widget.pyc\",\"line_trace_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/wireframe_widget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/wireframe_widget.pyc\",\"wireframe_widget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/scene/query_editor.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/query_editor.pyc\",\"query_editor.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/dng/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/dng/termuse.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/termuse.pyc\",\"termuse.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/dng/superpositiondialog.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/superpositiondialog.pyc\",\"superpositiondialog.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/dng/init.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/init.pyc\",\"init.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/dng/menu.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/menu.pyc\",\"menu.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/__init__.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./__init__.pyc\",\"__init__.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/init_context_menu.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_context_menu.pyc\",\"init_context_menu.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/init_menubar.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_menubar.pyc\",\"init_menubar.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/init_spacenav.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_spacenav.pyc\",\"init_spacenav.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/init_splash.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_splash.pyc\",\"init_splash.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/trajectory_viewer.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./trajectory_viewer.pyc\",\"trajectory_viewer.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/helpwidget.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./helpwidget.pyc\",\"helpwidget.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/table.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./table.pyc\",\"table.py\",doraise=True)" cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/build/openstructure-2.2.0/modules/gui/pymod/gosty_startup.py\",\"/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./gosty_startup.pyc\",\"gosty_startup.py\",doraise=True)" make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [100%] Built target _ost_gui make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake --color= Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/depend.internal". Dependee "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/depend.internal". Scanning dependencies of target ost_scripts make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/ost cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/dng cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/ost_startup.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/scripts/dng_startup.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/dng_startup.py make[3]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [100%] Built target ost_scripts make[2]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/openstructure-2.2.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' dh_auto_test cd obj-aarch64-linux-gnu && make -j8 check ARGS\+=-j8 make[1]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/openstructure-2.2.0 -B/build/openstructure-2.2.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[2]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/openstructure-2.2.0 -B/build/openstructure-2.2.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/openstructure-2.2.0/obj-aarch64-linux-gnu/CMakeFiles 95 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[3]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color= make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/openstructure-2.2.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /build/openstructure-2.2.0/cmake_support/substitute.cmake make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 0%] Built target subst_dng cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec [ 0%] Built target subst_ost cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests [ 0%] Built target subst_ost_startup.py [ 0%] Built target subst_ost_config make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 0%] Built target create_stage make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color= make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color= make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color= make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color= make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color= make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./alignment_opts.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/export_helper/vector.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color= make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./def.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/export_helper/generic_property_def.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/pointer_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./clip_alignment.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./conop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./exc.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./conservation.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./processor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./contact_prediction_score.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./dllexport.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./geom.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./amino_acids.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/test_utils/compare_files.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/config/./version.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./diag.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./generic_property.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./distance_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./integrity_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./entropy.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./model_check.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat2.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh [ 0%] Built target ost_config_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./global_align.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./invalid_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./heuristic.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_item.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat3.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./ins_del.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./sequence_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./ptr_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./compound.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./sequence_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./local_align.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./log.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./alignment_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./sqlite_wrap.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./compound_lib.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./mat4.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./log_sink.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./sqlite_conv.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_path.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec2.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./semiglobal_align.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_set.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./rule_based.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./linear_indexer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./sequence_identity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./sequence_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec3.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./profile.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./minimal_compound_lib.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./sequence_similarity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec4.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./aligned_region.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./paged_array.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./paged_array.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./info_verbose_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./dyn_cast.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat2_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./compound_lib_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./binary_container.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./stdint.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./variance_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./aligned_column.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat3_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/db/src/./extract_data_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./stdint_msc.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./aligned_column_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./item_type.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vecmat4_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./geom_info_conversion.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./invalid_sequence.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/conop/src/./ring_finder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/info/src/./item_type_cast.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./range.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./circular_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./views_from_sequences.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./constants.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh [ 0%] Built target ost_info_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/base/src/./profile_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/seq/alg/src/./hmm_score.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh [ 0%] Built target ost_db_headers make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite2.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./units.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh [ 0%] Built target ost_conop_headers make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite3.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./message.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/dispatch.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh [ 0%] Built target ost_seq_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color= [ 0%] Built target ost_seq_alg_headers make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./platform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./anisotropic.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite2_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./composite3_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./string_ref.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./auto_correlate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./aligned_cuboid.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/star_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./atom_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_spec.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./pod_vector.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./vec_mat_predicates.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./clear.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./atom_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./fixed_string.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./clip_min_max.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./quat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/map_octree.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/mmcif_info.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_def.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/selection_tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./conjugate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./atom_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./tri_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/base/src/./boost_filesystem_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/io_profile.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./point_cloud.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./convolute.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/measure_tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./bond_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/dcd_io.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./correlate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/geom/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_option.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh [ 0%] Built target ost_base_headers make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./cross_correlate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./bond_table.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./svd_superpose.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./density_slice.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh [ 0%] Built target ost_geom_headers make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./dft.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/manipulator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fft.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./sec_structure_segments.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/bindings/src/./wrap_tmalign.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fftw_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chain_type.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fill.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chem_class.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh [ 0%] Built target ost_bindings_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./distance_test_common.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/mouse_event.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/index.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./chem_type.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./filter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/pdb_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fourier_filters.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh [ 0%] Built target ost_config make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/tools/map_tool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./superpose_frames.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./coord_group.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./coord_source.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/image_state/value_holder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./filter_clashes.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./in_mem_coord_source.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/pdb_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./algorithm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./gaussian.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/src/CMakeFiles/ost_geom.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./construct_cbeta.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./gaussian_laplacian.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./coord_frame.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./clash_score.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./circle_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/sdf_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./composite_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./editor_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./trajectory_analysis.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./structure_analysis.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./histogram.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./editor_type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh make[4]: Nothing to be done for 'modules/base/src/CMakeFiles/ost_base.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data_algorithm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./line_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh [ 2%] Built target ost_base cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/save_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./mol.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./pdbize.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/load_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data_types.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./local_sigma_threshold.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/surface_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./data.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./mask_image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh [ 3%] Built target _ost_geom make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./contact_overlap.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./negate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./debug.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/load_surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./domain_find.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./similarity_matrix.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh Scanning dependencies of target ost_geom_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./normalizer_factory.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./dllexport.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_observer_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/pdb_str.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./accessibility.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./extent_iterator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh [ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_composite3.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_property_mapper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/load_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./sec_struct.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./normalizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./extent_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm_linear.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./extent.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./nonstandard.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/image_format.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_factory.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm_log.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./molck.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./norm_od.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./power_spectrum.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./handle_type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./find_membrane.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./randomize.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/alg/src/./entity_to_density.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_handle_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./ics_editor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./smooth_mask_image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./stat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh [ 3%] Built target ost_mol_alg_headers make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./not_connected_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_state_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./property_id.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./stat_accumulator.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image_state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./stat_min_max.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh [ 4%] Built target ost_info make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./threshold.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./image.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./inverted_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transcendentals.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query_error.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_base_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./render_pass.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query_state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh [ 4%] Built target _ost_base make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/info/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transform_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./bitmap_io.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./collada_exporter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh [ 5%] Built target _ost_info cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./alg_transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh [ 5%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_composite2.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./alg_mirror.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./color.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./residue_view.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./entity_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gl_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/tiff_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./sec_structure.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/img/jpk_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./alg_shift.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./spatial_organizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/sequence_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./discrete_shrink.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./normalizer_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface_builder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transformation_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./normalizer_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/profile_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./transformations.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./builder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./null_data.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./fractional_shift.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_node_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./observable.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_node_visitor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./surface_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./paste_impl.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_object_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./peak.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./polar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./torsion_handle.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./line_average.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./phase.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./transfer_connectivity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/load.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./query_view_wrapper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/alg/src/./rscrosscorr.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_object_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./physical_units.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/seq/save.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./view_type_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_prim.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./pixel_sampling.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./binary_data_sink.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh [ 5%] Built target ost_img_alg_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./symmetry_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./io_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./point_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh [ 6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_mat2.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./xcs_editor.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gfx_test_object.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./binary_data_source.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./point.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./bounding_box.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./glwin_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./transform.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./container_serialization.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./polygon_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/mol/base/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./input.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./swap_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/state.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./prim_list.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./progress.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./scene.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./io_utils.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./size.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./spherical_mask.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh [ 6%] Built target ost_mol_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./io_exception.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./selection.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./util.cc /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./convert.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/button_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./converting_streams.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./texture.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/drop_box.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./vertex_array.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./value_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./formatted_line.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh [ 11%] Built target ost_mol make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./vertex_array_helper.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./vecmat.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/chemdict_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./scene_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/img/base/src/./mask_info_convert.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/star_parser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gl_include.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/mmcif_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/button_box.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh [ 12%] Built target ost_seq make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./glext_include.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/event_button.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./render_mode.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh [ 12%] Built target ost_img_headers make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/mmcif_info.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./material.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/io_profile.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gradient.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh [ 13%] Built target ost_db [ 15%] Built target _ost_mol cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/dcd_io.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gradient_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/side_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh Scanning dependencies of target ost_base_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh [ 20%] Built target ost_img make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./primitives.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color= [ 20%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c /build/openstructure-2.2.0/modules/base/tests/test_generic_property.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./povray_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/bindings/src/CMakeFiles/ost_bindings.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./povray.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh [ 20%] Built target ost_bindings make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./exporter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/pdb_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./exporter_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./gost_exporter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/pdb_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/label_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./map_iso.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/root_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./map_slab.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh Scanning dependencies of target ost_mol_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/sdf_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh [ 20%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_atom_groups.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gfx/src/./map_iso_prop.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/sdf_writer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/save_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/load_entity.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/surface_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh [ 20%] Built target ost_gfx_headers make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/load_surface.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/messages/message_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh Scanning dependencies of target ost_seq_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/pdb_str.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/messages/log_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh [ 20%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o -c /build/openstructure-2.2.0/modules/seq/base/tests/test_sequence.cc cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/argand.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/sequence_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/fasta_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/pir_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/promod_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/profile_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/hhm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/pssm_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/clustal_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/load.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./seq/save.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/load_map.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_df3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/image_format.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_dx_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_spi_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_situs_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_mrc_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_dat_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_ipl_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies_fw.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_jpk_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_browser.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_png_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_type_dialog.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_dm3_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_viewer.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/map_io_tiff_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./gl_canvas.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/tiff_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./gl_win.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/io/src/./img/jpk_util.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./scene_menu.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./gosty_app.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./admin.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh [ 20%] Built target ost_io_headers cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./module_config.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./main.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./main_area.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./perspective.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh [ 22%] Built target ost_seq_alg make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./scene_selection.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./main_window.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh [ 22%] Built target _ost_seq make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./thin_splitter.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh [ 23%] Built target ost_conop make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color= cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_geom_handler.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_pool.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_registry.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./widget_state_saver.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/modules/gui/src/./file_loader.hh /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh [ 26%] Built target ost_img_alg make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build [ 26%] Built target ost_gui_headers make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[4]: Nothing to be done for 'modules/db/pymod/CMakeFiles/_ost_db.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color= [ 27%] Built target _ost_db make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color= [ 29%] Built target _ost_img make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 31%] Built target ost_mol_alg make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests.dir/DependInfo.cmake --color= [ 31%] Built target _ost_bindings make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_conop_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 32%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -c /build/openstructure-2.2.0/modules/conop/tests/test_amino_acids.cc Scanning dependencies of target ost_img_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 32%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_data.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_data.cc [ 32%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_extent.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_extent.cc [ 32%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_mat3.cc [ 32%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_mat4.cc [ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_chain.cc [ 33%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -c /build/openstructure-2.2.0/modules/base/tests/test_string_ref.cc [ 33%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_op2.cc [ 34%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_image.cc [ 34%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_op3.cc [ 34%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_image_state.cc [ 34%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -c /build/openstructure-2.2.0/modules/conop/tests/test_heuristic_conop.cc [ 34%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -c /build/openstructure-2.2.0/modules/seq/base/tests/test_aligned_column.cc [ 34%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_op4.cc [ 34%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -c /build/openstructure-2.2.0/modules/base/tests/test_pod_vector.cc [ 34%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_quat.cc [ 34%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_image_state_visitor.cc [ 34%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/base/tests/tests.cc [ 34%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_vec2.cc [ 34%] Linking CXX executable ../../../tests/ost_base_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 34%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_index.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_index.cc make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 34%] Built target ost_base_tests make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img_alg_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 34%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_clear.cc [ 34%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_vec3.cc [ 34%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/conop/tests/tests.cc [ 34%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_point.cc [ 34%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -c /build/openstructure-2.2.0/modules/seq/base/tests/test_aligned_region.cc [ 34%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c /build/openstructure-2.2.0/modules/conop/tests/test_rule_based_conop.cc [ 34%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_sampling.cc [ 35%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_conj.cc [ 35%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_vec4.cc [ 35%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_domains.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_domains.cc [ 36%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/test_transform.cc [ 36%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_size.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_size.cc [ 36%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_conn.cc [ 36%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_convolute.cc [ 36%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/test_value_holder.cc [ 36%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/geom/tests/tests.cc [ 36%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/img/base/tests/tests.cc [ 36%] Linking CXX executable ../../../tests/ost_geom_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o CMakeFiles/ost_geom_tests.dir/tests.cc.o -o ../../../tests/ost_geom_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so [ 36%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_discrete_shrink.cc [ 36%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_coord_group.cc [ 37%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -c /build/openstructure-2.2.0/modules/seq/base/tests/test_alignment.cc make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 37%] Built target ost_geom_tests make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 37%] Built target _ost_seq_alg make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 44%] Built target ost_gfx make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 45%] Built target _ost_conop make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 45%] Built target _ost_img_alg make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/io/src/CMakeFiles/ost_io.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 49%] Built target ost_io [ 49%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -c /build/openstructure-2.2.0/modules/seq/base/tests/test_profile.cc [ 49%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/seq/base/tests/tests.cc [ 49%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c /build/openstructure-2.2.0/modules/conop/tests/helper.cc [ 49%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_fft.cc [ 49%] Linking CXX executable ../../../../tests/ost_img_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 49%] Built target ost_img_tests make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 51%] Built target _ost_mol_alg make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_base_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 51%] running checks for module base cd /build/openstructure-2.2.0/modules/base/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_base_tests Running 5 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 51%] Built target ost_base_tests_run make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_geom_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 51%] running checks for module geom cd /build/openstructure-2.2.0/modules/geom/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_geom_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 51%] Built target ost_geom_tests_run make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_gfx_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 51%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/gfx/tests/tests.cc [ 52%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -c /build/openstructure-2.2.0/modules/gfx/tests/test_gfx_node.cc [ 52%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -c /build/openstructure-2.2.0/modules/gfx/tests/test_color.cc [ 52%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_fill.cc [ 52%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_builder.cc [ 52%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_delete.cc [ 52%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_filter.cc [ 52%] Linking CXX executable ../../../../tests/ost_seq_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o CMakeFiles/ost_seq_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 52%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c /build/openstructure-2.2.0/modules/gfx/tests/test_map_octree.cc make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 52%] Built target ost_seq_tests make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_img_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 53%] running checks for module img cd /build/openstructure-2.2.0/modules/img/base/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_img_tests Running 44 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 53%] Built target ost_img_tests_run make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_io_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 54%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_clustal.cc [ 54%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_histogram.cc [ 55%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_entity.cc [ 55%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_ics.cc [ 55%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_query.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_query.cc [ 55%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_io_pdb.cc [ 55%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_mirror.cc [ 55%] Linking CXX executable ../../../tests/ost_conop_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o CMakeFiles/ost_conop_tests.dir/tests.cc.o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o CMakeFiles/ost_conop_tests.dir/helper.cc.o -o ../../../tests/ost_conop_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so [ 55%] Linking CXX executable ../../../tests/ost_gfx_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_gfx_tests.dir/tests.cc.o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -o ../../../tests/ost_gfx_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Built target ost_conop_tests make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_alg_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/tests/test_superposition.cc make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Built target ost_gfx_tests make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_seq_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] running checks for module seq cd /build/openstructure-2.2.0/modules/seq/base/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_seq_tests Running 32 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Built target ost_seq_tests_run make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/DependInfo.cmake --color= Scanning dependencies of target ost_seq_alg_tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 55%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/tests/test_distance_analysis.cc [ 55%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_negate.cc [ 55%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_surface.cc [ 55%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_power_spectrum.cc [ 56%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_shift.cc [ 56%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/tests/tests.cc [ 56%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_residue.cc [ 56%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_view.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_view.cc [ 56%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/tests/test_consistency_checks.cc [ 56%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_transfer_connectivity.cc [ 56%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_stat.cc [ 56%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/test_view_op.cc [ 56%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/tests/test_merge_pairwise_alignments.cc [ 57%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c /build/openstructure-2.2.0/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc [ 57%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/mol/base/tests/tests.cc [ 57%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_io_crd.cc [ 57%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_transform.cc [ 57%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/test_normalizer.cc [ 57%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/img/alg/tests/tests.cc [ 57%] Linking CXX executable ../../../../tests/ost_mol_alg_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 57%] Built target ost_mol_alg_tests make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 60%] Built target _ost_gfx make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build [ 60%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/tests/test_sequence_identity.cc make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/src/CMakeFiles/ost_gui.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 92%] Built target ost_gui make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/io/pymod/CMakeFiles/_ost_io.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 92%] Built target _ost_io make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_conop_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 92%] running checks for module conop cd /build/openstructure-2.2.0/modules/conop/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_conop_tests Running 16 test cases... unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file *** No errors detected make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 92%] Built target ost_conop_tests_run make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_gfx_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 92%] running checks for module gfx cd /build/openstructure-2.2.0/modules/gfx/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_gfx_tests make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_alg_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 92%] running checks for module mol_alg cd /build/openstructure-2.2.0/modules/mol/alg/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_mol_alg_tests Running 4 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 92%] Built target ost_mol_alg_tests_run make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/pymod/CMakeFiles/_ost_gui.dir/build'. make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] Built target _ost_gui make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/ost cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/dng cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/ost_startup.py cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/openstructure-2.2.0/scripts/dng_startup.py /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/dng_startup.py make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] Built target ost_scripts make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/seq/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_weight_matrix.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] running checks test_weight_matrix.py cd /build/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/seq/alg/tests/test_weight_matrix.py" make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_stutil.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] running checks test_stutil.py cd /build/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/base/tests/test_stutil.py" .. ---------------------------------------------------------------------- Ran 2 tests in 0.001s OK ...... ---------------------------------------------------------------------- Ran 6 tests in 0.014s OK make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] Built target test_stutil.py_run make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_table.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] running checks test_table.py cd /build/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/base/tests/test_table.py" [ 94%] Built target test_weight_matrix.py_run make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_log.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] running checks test_log.py cd /build/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/base/tests/test_log.py" .... ---------------------------------------------------------------------- Ran 4 tests in 0.010s OK make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] Built target test_log.py_run make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_naccess.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] running checks test_naccess.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_naccess.py" Could not find NACCESS, could not test binding... make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] Built target test_naccess.py_run make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_clustalw.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] running checks test_clustalw.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_clustalw.py" .......................[ 94%] Linking CXX executable ../../../../tests/ost_img_alg_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 .make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 94%] Built target ost_img_alg_tests make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake --color= ....Scanning dependencies of target test_blast.py_run .....make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' .make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build .make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' ....[ 95%] running checks test_blast.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_blast.py" ./usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/enrichment-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback .Could not find blast executable: ignoring unit tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' .[ 95%] Built target test_blast.py_run make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_cadscore.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 95%] running checks test_cadscore.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_cadscore.py" /build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py:2963: MatplotlibDeprecationWarning: The 'basex' parameter of __init__() has been renamed 'base' since Matplotlib 3.3; support for the old name will be dropped two minor releases later. plt.xscale('log', basex=10) .... ---------------------------------------------------------------------- Ran 7 tests in 6.835s OK make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 95%] Built target test_clustalw.py_run make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_hhblits.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 95%] running checks test_hhblits.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_hhblits.py" .No HHblits installation found: skip unit tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 95%] Built target test_hhblits.py_run make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_kclust.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 95%] running checks test_kclust.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_kclust.py" .[ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_io_dcd.cc Could not find kClust executable: ignoring unit tests [ 95%] Linking CXX executable ../../../../tests/ost_mol_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o CMakeFiles/ost_mol_tests.dir/test_query.cc.o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o CMakeFiles/ost_mol_tests.dir/test_view.cc.o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 [ 95%] Built target test_kclust.py_run make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_msms.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 95%] running checks test_msms.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_msms.py" /usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ./usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-same-val-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ................./build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py:2186: DeprecationWarning: scipy.isnan is deprecated and will be removed in SciPy 2.0.0, use numpy.isnan instead if scipy.isnan(correl): ......................... ---------------------------------------------------------------------- Ran 83 tests in 12.961s OK Could not find msms executable: ignoring unit tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 95%] Built target test_msms.py_run make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' Scanning dependencies of target test_tmtools.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build [ 95%] Built target test_table.py_run make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake --color= [ 95%] running checks test_tmtools.py Scanning dependencies of target test_ialign.py_run cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_tmtools.py" make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] running checks test_ialign.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_ialign.py" make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] Built target ost_mol_tests make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_hbplus.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] running checks test_hbplus.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_hbplus.py" . ---------------------------------------------------------------------- Ran 1 test in 0.064s OK Could not find ialign master perl script: ignoring unit tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] Built target test_ialign.py_run make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_lga.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' .[ 96%] running checks test_lga.py cd /build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/bindings/tests/test_lga.py" . ---------------------------------------------------------------------- Ran 2 tests in 0.211s OK Could not find tmalign executable: ignoring unit tests Could not find tmalign executable: ignoring unit tests Could not find hbplus, could not test binding... make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] Built target test_tmtools.py_run make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/conop/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake --color= [ 96%] Built target test_hbplus.py_run make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/db/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake --color= Scanning dependencies of target test_processor.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' Scanning dependencies of target test_linear_db.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build [ 96%] running checks test_processor.py cd /build/openstructure-2.2.0/modules/conop/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/conop/tests/test_processor.py" make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] running checks test_linear_db.py cd /build/openstructure-2.2.0/modules/db/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/db/tests/test_linear_db.py" . ---------------------------------------------------------------------- Ran 1 test in 0.085s OK Could not find lga executable: ignoring unit tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' ... ---------------------------------------------------------------------- Ran 3 tests in 0.008s OK [ 96%] Built target test_lga.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] Built target test_linear_db.py_run [ 96%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_io_sdf.cc make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/geom/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake --color= . ---------------------------------------------------------------------- Ran 1 test in 0.001s OK make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' Scanning dependencies of target test_geom.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 96%] Built target test_processor.py_run make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/gfx/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake --color= [ 96%] running checks test_geom.py cd /build/openstructure-2.2.0/modules/geom/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/geom/tests/test_geom.py" Scanning dependencies of target test_gfx.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] running checks test_gfx.py cd /build/openstructure-2.2.0/modules/gfx/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/gfx/tests/test_gfx.py" ........ ---------------------------------------------------------------------- Ran 8 tests in 0.019s OK ...... ---------------------------------------------------------------------- Ran 6 tests in 0.004s OK make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] Built target test_geom.py_run make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/img/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake --color= [ 97%] Built target test_gfx.py_run Scanning dependencies of target ost_img_alg_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_io_sequence_profile.cc make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] running checks for module img_alg cd /build/openstructure-2.2.0/modules/img/alg/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_img_alg_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] Built target ost_img_alg_tests_run make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/DependInfo.cmake --color= [ 97%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/seq/alg/tests/tests.cc Scanning dependencies of target test_io_pdb.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] running checks test_io_pdb.py cd /build/openstructure-2.2.0/modules/io/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/io/tests/test_io_pdb.py" ...s ---------------------------------------------------------------------- Ran 4 tests in 0.007s OK (skipped=1) make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] Built target test_io_pdb.py_run make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/DependInfo.cmake --color= [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_pir.cc Scanning dependencies of target test_io_mmcif.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] running checks test_io_mmcif.py cd /build/openstructure-2.2.0/modules/io/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/io/tests/test_io_mmcif.py" .[ 97%] Linking CXX executable ../../../../tests/ost_seq_alg_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_alg_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ........s ---------------------------------------------------------------------- Ran 10 tests in 3.403s OK (skipped=1) make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 97%] Built target test_io_mmcif.py_run make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/DependInfo.cmake --color= Scanning dependencies of target ost_mol_tests_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 98%] running checks for module mol cd /build/openstructure-2.2.0/modules/mol/base/tests && env OST_ROOT=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_mol_tests [ 98%] Built target ost_seq_alg_tests make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/openstructure-2.2.0 /build/openstructure-2.2.0/modules/mol/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake --color= Running 70 test cases... /build/openstructure-2.2.0/modules/mol/base/tests/test_ics.cc(216): error: in "mol_base/ics_settorsion_linear_unbuffered": difference{4} between s.t2.GetAngle(){-2.3561945} and Real(3.14159265358979323846/4){0.785398185} exceeds 0.0001% Scanning dependencies of target test_pdbize.py_run make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build make[4]: Entering directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' *** 1 failure is detected in the test module "ost_mol_base" make[4]: *** [modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make:80: modules/mol/base/tests/CMakeFiles/ost_mol_tests_run] Error 201 make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:5452: modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 98%] running checks test_pdbize.py cd /build/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ /usr/bin/python3.9 /build/openstructure-2.2.0/modules/mol/alg/tests/test_pdbize.py" [ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_iomanager.cc ........ ---------------------------------------------------------------------- Ran 8 tests in 0.016s OK make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [ 98%] Built target test_pdbize.py_run [ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c /build/openstructure-2.2.0/modules/io/tests/tests.cc [ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_star_parser.cc [ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_mmcif_reader.cc [100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_mmcif_info.cc [100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_io_img.cc [100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c /build/openstructure-2.2.0/modules/io/tests/test_exceptions.cc . ---------------------------------------------------------------------- Ran 2 tests in 77.567s OK Could not find CAD score classic executables: ignoring unit tests make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [100%] Built target test_cadscore.py_run [100%] Linking CXX executable ../../../tests/ost_io_tests cd /build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_io_tests.dir/test_clustal.cc.o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o CMakeFiles/ost_io_tests.dir/test_pir.cc.o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o CMakeFiles/ost_io_tests.dir/tests.cc.o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o ../../../tests/ost_io_tests -L/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/openstructure-2.2.0/obj-aarch64-linux-gnu' [100%] Built target ost_io_tests Tue Aug 10 03:18:51 UTC 2021 - pbuilder was killed by timeout after 18h.