Thu Jul 15 18:48:12 UTC 2021 I: starting to build python-dicompylercore/bullseye/arm64 on jenkins on '2021-07-15 18:47' Thu Jul 15 18:48:12 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_14/21327/console.log Thu Jul 15 18:48:12 UTC 2021 I: Downloading source for bullseye/python-dicompylercore=0.5.5-2 --2021-07-15 18:48:13-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-dicompylercore/python-dicompylercore_0.5.5-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2283 (2.2K) Saving to: ‘python-dicompylercore_0.5.5-2.dsc’ 0K .. 100% 200M=0s 2021-07-15 18:48:13 (200 MB/s) - ‘python-dicompylercore_0.5.5-2.dsc’ saved [2283/2283] Thu Jul 15 18:48:13 UTC 2021 I: python-dicompylercore_0.5.5-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-dicompylercore Binary: python3-dicompylercore Architecture: any Version: 0.5.5-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/dicompyler/dicompyler-core Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-dicompylercore Vcs-Git: https://salsa.debian.org/med-team/python-dicompylercore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 12), dh-python, python3, python3-setuptools, python3-matplotlib , python3-pydicom , python3-shapely , python3-skimage Package-List: python3-dicompylercore deb python optional arch=any Checksums-Sha1: 6318cb1a8c494d315056e308359bcce53f069e7e 2712234 python-dicompylercore_0.5.5.orig.tar.gz 1c570eec811248133be593d94229ed177d9e5486 2160 python-dicompylercore_0.5.5-2.debian.tar.xz Checksums-Sha256: 85ae0130b24fd19d5bfbc2b6f16e60b6c10fd98807e56dfde2a5e58986ec365f 2712234 python-dicompylercore_0.5.5.orig.tar.gz ed0c9ea4bc97907cd31d1c3370a76a8c2167ea5458099846383bfe51c5aa1773 2160 python-dicompylercore_0.5.5-2.debian.tar.xz Files: fd9bad21f20e6cb45451ab27739e3429 2712234 python-dicompylercore_0.5.5.orig.tar.gz 5566722752407a6fec59c0bdf71a18cb 2160 python-dicompylercore_0.5.5-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4pjgURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE5SRAAmG5Ju1wf4PiIPTsG/LMxPXC1t56XFeXb z4mkgwB81yggQX1OL46vy6zUI0Sb5YSl6qnQFqszT8oDuXOn339YiV7G0Ze21JCV 7EtcHn322yhT07j4Fwn9aMS+KOkvz2S5P+mQUhexypdRp5Qtc9sj2L4lgJc2jQLZ ANseU3a5O1muYzxOaodsyWiEVfE/C1TT/ecicbbepSu4xEmwaLoYMavSdSbzKKmV TMxCU2OV80/xW4hUkwmq9AFLwFLzvJfAS7b3RwEzVQAVL7trL0Pl3xJCkDGe4ntL cRQwkmbJRewTpCiCPDncfuGGgz7xo+B8Ea2G24UR0M1djCla3yhg4PlLFm/nxp+p +19URlHdKRM21fua5YVCfwAZ0iMzUfQUJd8MBHEGZxmgmaZkYovvp45GB8yE4UAs KFbwWBAKg6czG8PdXYb8620OSaWzmIGfFmEtKMAKpTi2FZh7z0CKORSSuPBSVFTf 4iJxWPQLEXAP/hk+9XU7Lm50V15aLyeapOCaWQqTid3Pe5Zb7nNcYq5J6dARxeg5 PASXxMKOBujahs1doSw+zTamAehGRoINDlmJVqxShgxf0lM7Wa0hDjE3b/fLOgET VixtcdrNXCO8ZBSleiKZK5TU6GPhC1ZG91gwm2m1rgkoZeviAUX0esW8dbDoGahK BIk1z+KvY3E= =dkNO -----END PGP SIGNATURE----- Thu Jul 15 18:48:13 UTC 2021 I: Checking whether the package is not for us Thu Jul 15 18:48:13 UTC 2021 I: Starting 1st build on remote node codethink12-arm64.debian.net. Thu Jul 15 18:48:13 UTC 2021 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Thu Jul 15 18:52:02 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 15 06:49:07 -12 2021 I: pbuilder-time-stamp: 1626374947 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dicompylercore_0.5.5-2.dsc] I: copying [./python-dicompylercore_0.5.5.orig.tar.gz] I: copying [./python-dicompylercore_0.5.5-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.KBZxrVk3/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 23 00:13:57 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-dicompylercore_0.5.5-2.dsc dpkg-source: info: extracting python-dicompylercore in python-dicompylercore-0.5.5 dpkg-source: info: unpacking python-dicompylercore_0.5.5.orig.tar.gz dpkg-source: info: unpacking python-dicompylercore_0.5.5-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1976/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1976' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Cb0ZXR8xfb/pbuilderrc_OajL --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Cb0ZXR8xfb/b1 --logfile b1/build.log python-dicompylercore_0.5.5-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 14 21:26 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/1976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3, python3-setuptools, python3-matplotlib, python3-pydicom, python3-shapely, python3-skimage dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pydicom; however: Package python3-pydicom is not installed. pbuilder-satisfydepends-dummy depends on python3-shapely; however: Package python3-shapely is not installed. pbuilder-satisfydepends-dummy depends on python3-skimage; however: Package python3-skimage is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgeos-3.9.0{a} libgeos-c1v5{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-imageio{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-networkx{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pydicom{a} python3-pyparsing{a} python3-pywt{a} python3-scipy{a} python3-setuptools{a} python3-shapely{a} python3-six{a} python3-skimage{a} python3-skimage-lib{a} python3-tifffile{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} ttf-bitstream-vera{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-dask python3-gdal python3-lxml python3-olefile python3-pydot python3-pygraphviz python3-pytest python3-tk python3-yaml wget 0 packages upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 110 MB of archives. After unpacking 322 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 fonts-lyx all 2.3.6-1 [205 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libgeos-3.9.0 arm64 3.9.0-1 [865 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libgeos-c1v5 arm64 3.9.0-1 [371 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 liblbfgsb0 arm64 3.0+dfsg.3-9 [24.5 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-1 [17.1 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 python3-cycler all 0.10.0-3 [8084 B] Get: 79 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-5 [81.7 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.2 [428 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 python3-imageio all 2.4.1-3 [3137 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 python3-kiwisolver arm64 1.3.1-1+b1 [51.6 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 python3-matplotlib arm64 3.3.4-1 [4109 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 python3-networkx all 2.5+ds-2 [900 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 python3-pydicom all 2.0.0-1 [28.1 MB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 python3-pywt arm64 1.1.1-1+b2 [929 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 python3-shapely arm64 1.7.1-2 [224 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 python3-skimage-lib arm64 0.18.1-2 [1727 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 python3-tifffile all 20210201-1 [134 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 python3-skimage all 0.18.1-2 [20.6 MB] Fetched 110 MB in 52s (2139 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. 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Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20958 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../12-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... 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Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../21-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... 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Preparing to unpack .../32-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../33-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../34-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../35-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../36-libpng16-16_1.6.37-3_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../37-libfreetype6_2.10.4+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1) ... Selecting previously unselected package libgeos-3.9.0:arm64. Preparing to unpack .../38-libgeos-3.9.0_3.9.0-1_arm64.deb ... Unpacking libgeos-3.9.0:arm64 (3.9.0-1) ... Selecting previously unselected package libgeos-c1v5:arm64. Preparing to unpack .../39-libgeos-c1v5_3.9.0-1_arm64.deb ... Unpacking libgeos-c1v5:arm64 (3.9.0-1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../40-libgfortran5_10.2.1-6_arm64.deb ... Unpacking libgfortran5:arm64 (10.2.1-6) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../41-libimagequant0_2.12.2-1.1_arm64.deb ... Unpacking libimagequant0:arm64 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../42-libjbig0_2.1-3.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../43-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../44-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../45-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../46-liblapack3_3.9.0-3_arm64.deb ... Unpacking liblapack3:arm64 (3.9.0-3) ... Selecting previously unselected package liblbfgsb0:arm64. Preparing to unpack .../47-liblbfgsb0_3.0+dfsg.3-9_arm64.deb ... Unpacking liblbfgsb0:arm64 (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../48-liblcms2-2_2.12~rc1-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.12~rc1-2) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../49-libwebp6_0.6.1-2.1_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../50-libtiff5_4.2.0-1_arm64.deb ... Unpacking libtiff5:arm64 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../51-libwebpdemux2_0.6.1-2.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../52-libwebpmux3_0.6.1-2.1_arm64.deb ... Unpacking libwebpmux3:arm64 (0.6.1-2.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../53-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../54-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../55-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... 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Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-dicompylercore-0.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dicompylercore_0.5.5-2_source.changes dpkg-buildpackage: info: source package python-dicompylercore dpkg-buildpackage: info: source version 0.5.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore copying dicompylercore/util.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore copying dicompylercore/dvhcalc.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore copying dicompylercore/dvh.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore copying dicompylercore/dicomparser.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore copying dicompylercore/config.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore copying dicompylercore/__init__.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore running egg_info creating dicompyler_core.egg-info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py test running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' running build_ext test_dvh_calculation (tests.test_dvhcalc.TestDVHCalc) Test if cumulative DVHs can be calculated from the DICOM data. ... /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:440: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. m = np.matrix( /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:449: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. imat = m * np.matrix([[i], [0], [0], [1]]) /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:452: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. jmat = m * np.matrix([[0], [j], [0], [1]]) ok test_dvh_calculation_empty_structure_no_dose (tests.test_dvhcalc.TestDVHCalc) Test if a DVH returns an empty histogram for invalid data. ... ok test_dvh_calculation_with_dose_limit (tests.test_dvhcalc.TestDVHCalc) Test if a DVH can be calculated with a max dose limit. ... ok test_dvh_calculation_with_interpolation_between_planes (tests.test_dvhcalc.TestDVHCalc) Test if DVH can be calculated using interpolation between planes. ... ok test_dvh_contour_outside_dose_grid (tests.test_dvhcalc.TestDVHCalc) Test if a DVH can be calculated with contours outside a dosegrid. ... Dose plane not found for 180.00. Using -122.4407 to calculate contour volume. Dose plane not found for 180.00. Contours not used for volume calculation. ok test_dvh_with_in_plane_interpolation (tests.test_dvhcalc.TestDVHCalc) Test if DVH can be calculated using in plane interpolation. ... ok test_dvh_with_in_plane_interpolation_sampling_fail (tests.test_dvhcalc.TestDVHCalc) Test if DVH calculation fails when the sampling rate is invalid. ... ok test_dvh_with_structure_extents (tests.test_dvhcalc.TestDVHCalc) Test if DVH calculation is same as normal with structure extents. ... ok test_dvh_with_structure_extents_larger_than_dose_grid (tests.test_dvhcalc.TestDVHCalc) Test DVH calculation using large structure structure extents. ... ok test_absolute_relative_dose_dvh (tests.test_dvh.TestDVH) Test if an absolute and relative dose DVH can be generated. ... ok test_absolute_relative_full_conversion (tests.test_dvh.TestDVH) Test if an abs / relative volume / dose DVH can be generated. ... ok test_absolute_relative_volume_dvh (tests.test_dvh.TestDVH) Test if an absolute and relative volume DVH can be generated. ... ok test_cumulative_dvh (tests.test_dvh.TestDVH) Test if a differential DVH can be converted to a cumulative DVH. ... ok test_differential_dvh (tests.test_dvh.TestDVH) Test if a cumulative DVH can be converted to a differential DVH. ... ok test_dose_constraint_with_no_counts (tests.test_dvh.TestDVH) ... ok test_dose_constraint_with_zero_volume (tests.test_dvh.TestDVH) ... ok test_dvh_compare (tests.test_dvh.TestDVH) Test if the DVH comparsion summary can be generated. ... ok test_dvh_describe (tests.test_dvh.TestDVH) Test if the DVH statistics summary can be generated. ... ok test_dvh_properties (tests.test_dvh.TestDVH) Test if the DVH properties can be derived. ... ok test_dvh_statistics (tests.test_dvh.TestDVH) Test if the DVH statistics can be calculated. ... ok test_dvh_statistics_shorthand (tests.test_dvh.TestDVH) Test if the DVH statistics can be accessed via shorthand. ... ok test_dvh_statistics_shorthand_fail (tests.test_dvh.TestDVH) Test if the DVH statistics shorthand fail on invalid syntaxes. ... ok test_dvh_statistics_with_no_counts (tests.test_dvh.TestDVH) ... ok test_dvh_statistics_with_zero_volume (tests.test_dvh.TestDVH) ... ok test_dvh_value (tests.test_dvh.TestDVH) Test if the DVHValue class works as expected. ... ok test_plotting (tests.test_dvh.TestDVH) Test if the DVH can be plotted. ... ok test_raw_data_dvh (tests.test_dvh.TestDVH) Test if a DVH can be created from raw data. ... ok test_raw_data_dvh_max_bins (tests.test_dvh.TestDVH) Test if a DVH can be created from raw data with [0, 5] bin. ... ok test_dataset_import (tests.test_dicomparser.TestCommon) Test if a pydicom dataset file can be parsed. ... ok test_demographics (tests.test_dicomparser.TestCommon) Test if the demographics info can be parsed. ... ok test_file_import (tests.test_dicomparser.TestCommon) Test if a standard DICOM file can be parsed. ... ok test_frame_of_reference (tests.test_dicomparser.TestCommon) Test if the frame of reference can be parsed. ... ok test_series_info (tests.test_dicomparser.TestCommon) Test if the series info can be parsed. ... ok test_study_info (tests.test_dicomparser.TestCommon) Test if the study info can be parsed. ... ok test_image_data (tests.test_dicomparser.TestImage) Test if the image data info can be parsed. ... ok test_image_generation (tests.test_dicomparser.TestImage) Test if the image can be generated. ... ok test_image_location (tests.test_dicomparser.TestImage) Test if the image location can be parsed. ... ok test_image_orientation (tests.test_dicomparser.TestImage) Test if the image orientation can be parsed. ... ok test_patient_to_pixel_lut (tests.test_dicomparser.TestImage) Test if the image transformation matrix (LUT) can be generated. ... /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:440: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. m = np.matrix( /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:449: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. imat = m * np.matrix([[i], [0], [0], [1]]) /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:452: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. jmat = m * np.matrix([[0], [j], [0], [1]]) ok test_dose_data (tests.test_dicomparser.TestRTDose) Test if the dose data can be parsed. ... ok test_dose_grid (tests.test_dicomparser.TestRTDose) Test if the dose grid can be parsed. ... ok test_dvh_data (tests.test_dicomparser.TestRTDose) Test if the DVH data can be parsed. ... ok test_has_dvhs (tests.test_dicomparser.TestRTDose) Test if DVHs exist in the dataset. ... ok test_isodose_points (tests.test_dicomparser.TestRTDose) Test if isodose points can be generated from the dose grid. ... ok test_referenced_plan (tests.test_dicomparser.TestRTDose) Test if the referenced plan can be parsed. ... ok test_plan_beams_in_fraction (tests.test_dicomparser.TestRTPlan) Test if beams for a given fraction data can be parsed. ... ok test_plan_data (tests.test_dicomparser.TestRTPlan) Test if the plan data can be parsed. ... ok test_referenced_structureset (tests.test_dicomparser.TestRTPlan) Test if the referenced structure set can be parsed. ... ok test_referenced_frame_of_reference (tests.test_dicomparser.TestRTStructureSet) Test if the referenced frame of reference can be parsed. ... ok test_referenced_series (tests.test_dicomparser.TestRTStructureSet) Test if the referenced series can be parsed. ... ok test_structure_plane_thickness (tests.test_dicomparser.TestRTStructureSet) Test if a structure plane thickness can be parsed. ... ok test_structure_set_coordinates (tests.test_dicomparser.TestRTStructureSet) Test if the structure set coordinates can be parsed. ... ok test_structure_set_data (tests.test_dicomparser.TestRTStructureSet) Test if the structure set data can be parsed. ... ok test_structure_set_info (tests.test_dicomparser.TestRTStructureSet) Test if the structure set info can be parsed. ... ok test_structure_volume (tests.test_dicomparser.TestRTStructureSet) Test if a structure volume can be calculated. ... ok test_structure_volume_holes (tests.test_dicomparser.TestRTStructureSet) Test if a structure volume with holes can be calculated. ... ok ---------------------------------------------------------------------- Ran 56 tests in 9.960s OK Structure: test test Rel Diff Abs diff ----- DVH Type: cumulative, abs dose: Gy, abs volume: cm3 Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00 Max: 14.58 Gy 14.58 Gy +0.00 % +0.00 Min: 14.07 Gy 14.07 Gy +0.00 % +0.00 Mean: 14.29 Gy 14.29 Gy +0.00 % +0.00 D100: 14.06 Gy 14.06 Gy +0.00 % +0.00 D98: 14.12 Gy 14.12 Gy +0.00 % +0.00 D95: 14.14 Gy 14.14 Gy +0.00 % +0.00 D2cc: 14.39 Gy 14.39 Gy +0.00 % +0.00 Structure: test test Rel Diff Abs diff ----- DVH Type: cumulative, rel dose, abs volume: cm3 Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00 Max: 104.14 % 104.14 % +0.00 % +0.00 Min: 100.50 % 100.50 % +0.00 % +0.00 Mean: 102.04 % 102.04 % +0.00 % +0.00 D100: 100.43 % 100.43 % +0.00 % +0.00 D98: 100.86 % 100.86 % +0.00 % +0.00 D95: 101.00 % 101.00 % +0.00 % +0.00 V100: 12.81 % 12.81 % +0.00 % +0.00 V95: 12.81 % 12.81 % +0.00 % +0.00 V5: 12.81 % 12.81 % +0.00 % +0.00 D2cc: 102.79 % 102.79 % +0.00 % +0.00 Structure: test ----- DVH Type: cumulative, abs dose: Gy, abs volume: cm3 Volume: 12.81 cm3 Max Dose: 14.58 Gy Min Dose: 14.07 Gy Mean Dose: 14.29 Gy D100: 14.06 Gy D98: 14.12 Gy D95: 14.14 Gy D2cc: 14.39 Gy Structure: test ----- DVH Type: cumulative, rel dose, abs volume: cm3 Volume: 12.81 cm3 Max Dose: 104.14 % Min Dose: 100.50 % Mean Dose: 102.04 % D100: 100.43 % D98: 100.86 % D95: 101.00 % V100: 12.81 cm3 V95: 12.81 cm3 V5: 12.81 cm3 D2cc: 102.79 % create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore running install running build running build_py running egg_info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' running install_lib creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9 creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore/__init__.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore/config.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore/dicomparser.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore/dvh.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore/dvhcalc.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.9/build/dicompylercore/util.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore/config.py to config.cpython-39.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore/dicomparser.py to dicomparser.cpython-39.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore/dvh.py to dvh.cpython-39.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore/dvhcalc.py to dvhcalc.cpython-39.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompylercore/util.py to util.cpython-39.pyc running install_egg_info Copying dicompyler_core.egg-info to /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.9/dist-packages/dicompyler_core-0.5.5.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dicompylercore: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dicompylercore' in '../python3-dicompylercore_0.5.5-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-dicompylercore_0.5.5-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1976 and its subdirectories I: Current time: Thu Jul 15 06:51:35 -12 2021 I: pbuilder-time-stamp: 1626375095 Thu Jul 15 18:52:29 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Thu Jul 15 18:52:29 UTC 2021 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Thu Jul 15 18:54:12 UTC 2021 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Thu Jul 15 18:54:13 UTC 2021 I: python-dicompylercore_0.5.5-2_arm64.changes: Format: 1.8 Date: Thu, 23 Jan 2020 12:59:57 +0100 Source: python-dicompylercore Binary: python3-dicompylercore Architecture: arm64 Version: 0.5.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-dicompylercore - core radiation therapy modules for DICOM / DICOM RT used by dicom Changes: python-dicompylercore (0.5.5-2) unstable; urgency=medium . * Testsuite: autopkgtest-pkg-python (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 9ccd527734413244a9496fc0651c2934f13cbaec 6625 python-dicompylercore_0.5.5-2_arm64.buildinfo 973df50b39edc2183729bd93b36f2a7871c54c80 23948 python3-dicompylercore_0.5.5-2_arm64.deb Checksums-Sha256: 109eb68a28d8baf8268dade48324ee08d5e53beb18436a0c6aa05ae255e754c2 6625 python-dicompylercore_0.5.5-2_arm64.buildinfo 241170aff4e03706434ed9ded744f4a73f5121a47da4d62c5fc6bc80fda24de3 23948 python3-dicompylercore_0.5.5-2_arm64.deb Files: 67d31d01f4521b571144d0ecc84f15df 6625 python optional python-dicompylercore_0.5.5-2_arm64.buildinfo 7cbb8cb69ef98e2ae1c5fdc614f6b0eb 23948 python optional python3-dicompylercore_0.5.5-2_arm64.deb Thu Jul 15 18:54:14 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Cb0ZXR8xfb/python-dicompylercore_0.5.5-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Cb0ZXR8xfb/python-dicompylercore_0.5.5-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Cb0ZXR8xfb/python-dicompylercore_0.5.5-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Cb0ZXR8xfb/b1/python-dicompylercore_0.5.5-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.Cb0ZXR8xfb/b2/python-dicompylercore_0.5.5-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.239s) 0.239s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 15 18:54:18 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 15 18:54:18 UTC 2021 I: python-dicompylercore from bullseye built successfully and reproducibly on arm64. Thu Jul 15 18:54:19 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 15 18:54:19 UTC 2021 I: Submitting 8.0K b1/python-dicompylercore_0.5.5-2_arm64.buildinfo.asc Thu Jul 15 18:54:20 UTC 2021 I: Submitting 8.0K b2/python-dicompylercore_0.5.5-2_arm64.buildinfo.asc Thu Jul 15 18:54:21 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 15 18:54:21 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 15 18:54:21 UTC 2021 I: Removing signed python-dicompylercore_0.5.5-2_arm64.buildinfo.asc files: removed './b1/python-dicompylercore_0.5.5-2_arm64.buildinfo.asc' removed './b2/python-dicompylercore_0.5.5-2_arm64.buildinfo.asc'