Fri Aug 20 00:01:43 UTC 2021 I: starting to build snakemake/bullseye/arm64 on jenkins on '2021-08-20 00:01' Fri Aug 20 00:01:43 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_28/38364/console.log Fri Aug 20 00:01:43 UTC 2021 I: Downloading source for bullseye/snakemake=5.24.1-2 --2021-08-20 00:01:44-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/snakemake/snakemake_5.24.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2903 (2.8K) Saving to: ‘snakemake_5.24.1-2.dsc’ 0K .. 100% 162M=0s 2021-08-20 00:01:44 (162 MB/s) - ‘snakemake_5.24.1-2.dsc’ saved [2903/2903] Fri Aug 20 00:01:44 UTC 2021 I: snakemake_5.24.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snakemake Binary: snakemake Architecture: all Version: 5.24.1-2 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray , Rebecca N. Palmer Homepage: https://snakemake.readthedocs.io/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/snakemake Vcs-Git: https://salsa.debian.org/med-team/snakemake.git Testsuite: autopkgtest Testsuite-Triggers: environment-modules, python3-pandas, python3-pygraphviz, python3-pytest, stress Build-Depends: ca-certificates, cwltool, debhelper-compat (= 13), dh-python, environment-modules, imagemagick, python3, python3-appdirs, python3-biopython, python3-boto3, python3-botocore, python3-configargparse, python3-datrie, python3-docutils, python3-dropbox, python3-flask, python3-git, python3-jinja2, python3-jsonschema, python3-nbformat, python3-networkx, python3-pandas, python3-pkg-resources, python3-psutil, python3-pulp, python3-pygments, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark , python3-requests, python3-rpy2, python3-setuptools, python3-sphinx , python3-sphinx-argparse , python3-sphinx-bootstrap-theme , python3-sphinx-rtd-theme , python3-toposort, python3-wrapt, python3-yaml, r-cran-rmarkdown, stress Package-List: snakemake deb science optional arch=all Checksums-Sha1: 25aaa54eeb3c1850bb0fe1d099d176c9d5e22632 6820733 snakemake_5.24.1.orig.tar.gz 5a00f27152e03ae25449b704f3cc7b6b920991e9 19584 snakemake_5.24.1-2.debian.tar.xz Checksums-Sha256: 6001380deee67aed14706c825133a316767399c8bd2496e37aff5df3c06cd0e8 6820733 snakemake_5.24.1.orig.tar.gz 2ac44044ed5a81603cd2f265b444d2cea370f1c62329e75fc07dbed388644f4c 19584 snakemake_5.24.1-2.debian.tar.xz Files: 183644878bead48647357994b16a495f 6820733 snakemake_5.24.1.orig.tar.gz a4a0c09a3bf7dc7f9dcc264cff2771dc 19584 snakemake_5.24.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmB0ir0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGfvg//UzLWbOEoHBj5eGIzAS09RMI4OaOjDszm h6OEP9w5Cc4vi3TWx3GpZjlleAR60iUY8wg4zW6GbGXFipNd63WHTzQDXEyUnU0m SP/OEW17cO8N4eGKNMuXcnC0bxbZlhXYlbQIebrD06uDaqhYjPN3fz052awHlZ/d zGQGKZAXAIokD6l9zDJTDpPdJ3j+atNfwkiAf9PWvONTk/HktSFmsy3/D9uYU+Yn bOkL+tn2AS+LsAXzedwXrWYS2GJ/+q/aRXaiLs0M0mr6l+tj0fytDhli4WxUqIqI jR8ZH+qrH8/lZPO5Foeos0a4JQa8GIwxAOLNEcfEtOdY+MA+8cqSIgBgh+T3xSq9 Cczx30Q6zTiV5Gf5fLXS/ZSL5JfuQmxIoDk0HrvgGc6FA+kIuhoJyoULhbWf6Ok6 mEArd6K4MEAP/Q4I47IFOrdn/bfcMa2I7H2dM93wXKHOYiAN+AOgR+njfhGLhw8h wcoatdtcdJFGmV+lv7jpLJ0GGuU6nQETOyD+8LJFBY2yDx/BjJKA05u9eQ5jdIBR f4wVVK0bLB1W89LdlttoDha2n1R+Ivx0zFuiViY4VnyUZFDtt6aodVTkWJMopj2k nsio/7IkYfvf/w9g1kg6RTs0lwxXxoAVQssm0tG9a1jG0eQ1C67bL90EHFcpOmzR U3qO3El4oiQ= =JaJk -----END PGP SIGNATURE----- Fri Aug 20 00:01:44 UTC 2021 I: Checking whether the package is not for us Fri Aug 20 00:01:44 UTC 2021 I: Starting 1st build on remote node codethink15-arm64.debian.net. Fri Aug 20 00:01:44 UTC 2021 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Fri Aug 20 00:17:30 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 21 18:24:51 -12 2022 I: pbuilder-time-stamp: 1663827891 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [snakemake_5.24.1-2.dsc] I: copying [./snakemake_5.24.1.orig.tar.gz] I: copying [./snakemake_5.24.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.IiUhikxk/trustedkeys.kbx': General error gpgv: Signature made Mon Apr 12 06:00:29 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snakemake_5.24.1-2.dsc dpkg-source: info: extracting snakemake in snakemake-5.24.1 dpkg-source: info: unpacking snakemake_5.24.1.orig.tar.gz dpkg-source: info: unpacking snakemake_5.24.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-the-inbuild-sphinx.ext.napoleon.patch dpkg-source: info: applying local_javascript.patch dpkg-source: info: applying 0003-Compat-fix.patch dpkg-source: info: applying 0006-restore-bin.patch dpkg-source: info: applying 0008-remove_sphinx.ext.patch dpkg-source: info: applying 0009-skip-test-without-google-cloud-sdk.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying workaround_sphinx_issue.patch dpkg-source: info: applying remove_ccbysa_snippets.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22862/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22862' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.m5PMxoZlZe/pbuilderrc_fGhy --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.m5PMxoZlZe/b1 --logfile b1/build.log snakemake_5.24.1-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 2021 more -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 18 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/22862/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: ca-certificates, cwltool, debhelper-compat (= 13), dh-python, environment-modules, imagemagick, python3, python3-appdirs, python3-biopython, python3-boto3, python3-botocore, python3-configargparse, python3-datrie, python3-docutils, python3-dropbox, python3-flask, python3-git, python3-jinja2, python3-jsonschema, python3-nbformat, python3-networkx, python3-pandas, python3-pkg-resources, python3-psutil, python3-pulp, python3-pygments, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-requests, python3-rpy2, python3-setuptools, python3-sphinx, python3-sphinx-argparse, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-toposort, python3-wrapt, python3-yaml, r-cran-rmarkdown, stress dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on ca-certificates; however: Package ca-certificates is not installed. pbuilder-satisfydepends-dummy depends on cwltool; however: Package cwltool is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on environment-modules; however: Package environment-modules is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-appdirs; however: Package python3-appdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-boto3; however: Package python3-boto3 is not installed. pbuilder-satisfydepends-dummy depends on python3-botocore; however: Package python3-botocore is not installed. pbuilder-satisfydepends-dummy depends on python3-configargparse; however: Package python3-configargparse is not installed. pbuilder-satisfydepends-dummy depends on python3-datrie; however: Package python3-datrie is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on python3-dropbox; however: Package python3-dropbox is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-git; however: Package python3-git is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-nbformat; however: Package python3-nbformat is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however: Package python3-pkg-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-pulp; however: Package python3-pulp is not installed. pbuilder-satisfydepends-dummy depends on python3-pygments; however: Package python3-pygments is not installed. pbuilder-satisfydepends-dummy depends on python3-pygraphviz; however: Package python3-pygraphviz is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytools; however: Package python3-pytools is not installed. pbuilder-satisfydepends-dummy depends on python3-ratelimiter; however: Package python3-ratelimiter is not installed. pbuilder-satisfydepends-dummy depends on python3-recommonmark; however: Package python3-recommonmark is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-rpy2; however: Package python3-rpy2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-argparse; however: Package python3-sphinx-argparse is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-bootstrap-theme; however: Package python3-sphinx-bootstrap-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-toposort; however: Package python3-toposort is not installed. pbuilder-satisfydepends-dummy depends on python3-wrapt; however: Package python3-wrapt is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. pbuilder-satisfydepends-dummy depends on stress; however: Package stress is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} coinor-cbc{a} coinor-libcbc3{a} coinor-libcgl1{a} coinor-libclp1{a} coinor-libcoinutils3v5{a} coinor-libosi1v5{a} cwltool{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} environment-modules{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-mathjax{a} gettext{a} gettext-base{a} git{a} git-man{a} graphviz{a} groff-base{a} hicolor-icon-theme{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} less{a} libann0{a} libaom0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libc-ares2{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcmark-gfm-extensions0{a} libcmark-gfm0{a} libcurl3-gnutls{a} libcurl4{a} libdatrie1{a} libdav1d4{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} liberror-perl{a} libexpat1{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgd3{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-prettify{a} libjs-sifter.js{a} libjs-sphinxdoc{a} libjs-twitter-bootstrap-datepicker{a} libjs-underscore{a} liblab-gamut1{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} liblqr-1-0{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmagickcore-6.q16-6{a} libmagickwand-6.q16-6{a} libmd0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libnode72{a} libnuma1{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps8{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx265-192{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6{a} libyaml-0-2{a} littler{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} node-highlight.js{a} node-html5shiv{a} node-normalize.css{a} nodejs{a} openssl{a} pandoc{a} pandoc-data{a} po-debconf{a} procps{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-appdirs{a} python3-arcp{a} python3-argcomplete{a} python3-attr{a} python3-babel{a} python3-biopython{a} python3-boto3{a} python3-botocore{a} python3-cachecontrol{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-commonmark{a} python3-configargparse{a} python3-dateutil{a} python3-datrie{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-dropbox{a} python3-flask{a} python3-git{a} python3-gitdb{a} python3-humanfriendly{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-ipython-genutils{a} python3-isodate{a} python3-itsdangerous{a} python3-jinja2{a} python3-jmespath{a} python3-jsonschema{a} python3-jupyter-core{a} python3-lib2to3{a} python3-lockfile{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-msgpack{a} python3-mypy-extensions{a} python3-nbformat{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-prov{a} python3-psutil{a} python3-pulp{a} python3-py{a} python3-pydot{a} python3-pygments{a} python3-pygraphviz{a} python3-pyparsing{a} python3-pyrsistent{a} python3-pytest{a} python3-pytools{a} python3-ratelimiter{a} python3-rdflib{a} python3-rdflib-jsonld{a} python3-recommonmark{a} python3-reportlab{a} python3-reportlab-accel{a} python3-requests{a} python3-roman{a} python3-rpy2{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-s3transfer{a} python3-schema-salad{a} python3-setuptools{a} python3-shellescape{a} python3-six{a} python3-smmap{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-argparse{a} python3-sphinx-bootstrap-theme{a} python3-sphinx-rtd-theme{a} python3-toml{a} python3-toposort{a} python3-traitlets{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} r-base-core{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fastmap{a} r-cran-glue{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-later{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mime{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tinytex{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} stress{a} tcl8.6{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation ghostscript gsfonts javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libgts-bin libldap-common libltdl-dev libmagickcore-6.q16-6-extra libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx ncbi-blast+ netpbm nodejs-doc openssh-client psmisc publicsuffix python-biopython-doc python3-blinker python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-openssl python3-pyinotify python3-renderpm python3-scipy python3-simplejson python3-sparqlwrapper python3-tables python3-xlwt r-base-dev r-cran-codetools r-cran-curl r-cran-dbi r-cran-dygraphs r-cran-future r-cran-ggplot2 r-cran-htmlwidgets r-cran-lattice r-cran-mockery r-cran-rsqlite r-cran-sp r-cran-testit r-cran-testthat r-cran-tibble r-cran-tikzdevice r-cran-vctrs r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 336 newly installed, 0 to remove and 0 not upgraded. Need to get 186 MB of archives. After unpacking 939 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 fonts-lato all 2.0-2.1 [2696 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libfftw3-double3 arm64 3.3.8-2 [385 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libaom0 arm64 1.0.0.errata1-3 [824 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libdav1d4 arm64 0.7.1-3 [256 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libde265-0 arm64 1.0.8-1 [202 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libnuma1 arm64 2.0.12-1+b1 [25.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libx265-192 arm64 3.4-2 [584 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libheif1 arm64 1.11.0-1 [173 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 liblqr-1-0 arm64 0.4.2-2.1 [23.9 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libltdl7 arm64 2.4.6-15 [390 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libopenjp2-7 arm64 2.4.0-3 [160 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.2-1 [311 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.2-1 [748 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 imagemagick-6-common all 8:6.9.11.60+dfsg-1.3 [211 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libmagickcore-6.q16-6 arm64 8:6.9.11.60+dfsg-1.3 [1625 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libmagickwand-6.q16-6 arm64 8:6.9.11.60+dfsg-1.3 [394 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 node-normalize.css all 8.0.1-3 [12.5 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 sgml-base all 1.30 [15.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 less arm64 551-2 [129 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 coinor-libcoinutils3v5 arm64 2.11.4+repack1-1 [417 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 coinor-libosi1v5 arm64 0.108.6+repack1-2 [229 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 coinor-libclp1 arm64 1.17.5+repack1-1 [777 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 coinor-libcgl1 arm64 0.60.3+repack1-2 [354 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 coinor-libcbc3 arm64 2.10.5+ds1-3 [610 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 coinor-cbc arm64 2.10.5+ds1-3 [14.7 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 python3-argcomplete all 1.8.1-1.5 [29.7 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 python3-humanfriendly all 9.1-1 [84.6 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 python3-coloredlogs all 7.3-2 [28.0 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 python3-mypy-extensions all 0.4.3-2 [5700 B] Get: 92 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-2 [17.5 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libxslt1.1 arm64 1.1.34-4 [228 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 python3-lxml arm64 4.6.3+dfsg-0.1 [988 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 python3-networkx all 2.5+ds-2 [900 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 python3-isodate all 0.6.0-2 [25.0 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 python3-rdflib all 5.0.0-1.1 [196 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 python3-prov all 1.5.2-2 [94.5 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 python3-psutil arm64 5.8.0-1 [184 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libann0 arm64 1.1.2+doc-7 [25.1 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libcdt5 arm64 2.42.2-5 [61.2 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libcgraph6 arm64 2.42.2-5 [82.7 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 libgd3 arm64 2.3.0-2 [127 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-4+b1 [143 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 libpixman-1-0 arm64 0.40.0-1 [444 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 libxcb-render0 arm64 1.14-3 [111 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 libcairo2 arm64 1.16.0-5 [648 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 fontconfig arm64 2.13.1-4.2 [416 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 libfribidi0 arm64 1.0.8-2 [64.8 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 libharfbuzz0b arm64 2.7.4-1 [1445 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 libthai-data all 0.1.28-3 [170 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 libdatrie1 arm64 0.2.13-1 [42.1 kB] Get: 121 http://deb.debian.org/debian bullseye/main arm64 libthai0 arm64 0.1.28-3 [53.0 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 libpango-1.0-0 arm64 1.46.2-3 [183 kB] Get: 123 http://deb.debian.org/debian bullseye/main arm64 libpangoft2-1.0-0 arm64 1.46.2-3 [59.4 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 libpangocairo-1.0-0 arm64 1.46.2-3 [48.6 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 libpathplan4 arm64 2.42.2-5 [62.6 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 libgvc6 arm64 2.42.2-5 [632 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 libgvpr2 arm64 2.42.2-5 [201 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 liblab-gamut1 arm64 2.42.2-5 [220 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 libxt6 arm64 1:1.2.0-1 [176 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB] Get: 134 http://deb.debian.org/debian bullseye/main arm64 libxaw7 arm64 2:1.0.13-1.1 [184 kB] Get: 135 http://deb.debian.org/debian bullseye/main arm64 graphviz arm64 2.42.2-5 [586 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 python3-pydot all 1.4.2-1 [32.7 kB] Get: 137 http://deb.debian.org/debian bullseye/main arm64 python3-certifi all 2020.6.20-1 [151 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 python3-idna all 2.10-1 [37.4 kB] Get: 140 http://deb.debian.org/debian bullseye/main arm64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 141 http://deb.debian.org/debian bullseye/main arm64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 142 http://deb.debian.org/debian bullseye/main arm64 python3-ruamel.yaml.clib arm64 0.2.2-1+b2 [108 kB] Get: 143 http://deb.debian.org/debian bullseye/main arm64 python3-ruamel.yaml all 0.16.12-2 [110 kB] Get: 144 http://deb.debian.org/debian bullseye/main arm64 python3-msgpack arm64 1.0.0-6+b1 [64.4 kB] Get: 145 http://deb.debian.org/debian bullseye/main arm64 python3-cachecontrol all 0.12.6-1 [16.4 kB] Get: 146 http://deb.debian.org/debian bullseye/main arm64 python3-lockfile all 1:0.12.2-2.2 [17.3 kB] Get: 147 http://deb.debian.org/debian bullseye/main arm64 python3-mistune all 0.8.4-4 [16.4 kB] Get: 148 http://deb.debian.org/debian bullseye/main arm64 python3-rdflib-jsonld all 0.5.0-1 [13.5 kB] Get: 149 http://deb.debian.org/debian bullseye/main arm64 python3-typing-extensions all 3.7.4.3-1 [29.8 kB] Get: 150 http://deb.debian.org/debian bullseye/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get: 151 http://deb.debian.org/debian bullseye/main arm64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get: 152 http://deb.debian.org/debian bullseye/main arm64 python3-schema-salad all 7.0.20210124093443-1 [302 kB] Get: 153 http://deb.debian.org/debian bullseye/main arm64 python3-shellescape all 3.4.1-4 [4884 B] Get: 154 http://deb.debian.org/debian bullseye/main arm64 python3-arcp all 0.2.1-3 [13.5 kB] Get: 155 http://deb.debian.org/debian bullseye/main arm64 cwltool all 3.0.20210124104916-3 [404 kB] Get: 156 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 157 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 158 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 159 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 160 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 161 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 162 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 163 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 164 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 165 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 166 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 167 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 168 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 169 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 170 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 171 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 172 http://deb.debian.org/debian bullseye/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 173 http://deb.debian.org/debian bullseye/main arm64 docutils-common all 0.16+dfsg-4 [129 kB] Get: 174 http://deb.debian.org/debian bullseye/main arm64 libtcl8.6 arm64 8.6.11+dfsg-1 [964 kB] Get: 175 http://deb.debian.org/debian bullseye/main arm64 tcl8.6 arm64 8.6.11+dfsg-1 [124 kB] Get: 176 http://deb.debian.org/debian bullseye/main arm64 environment-modules arm64 4.6.1-1 [478 kB] Get: 177 http://deb.debian.org/debian bullseye/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 178 http://deb.debian.org/debian bullseye/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 179 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 180 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 181 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 182 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 183 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 184 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 185 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 186 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 187 http://deb.debian.org/debian bullseye/main arm64 liberror-perl all 0.17029-1 [31.0 kB] Get: 188 http://deb.debian.org/debian bullseye/main arm64 git-man all 1:2.30.2-1 [1827 kB] Get: 189 http://deb.debian.org/debian bullseye/main arm64 git arm64 1:2.30.2-1 [5428 kB] Get: 190 http://deb.debian.org/debian bullseye/main arm64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 191 http://deb.debian.org/debian bullseye/main arm64 imagemagick-6.q16 arm64 8:6.9.11.60+dfsg-1.3 [383 kB] Get: 192 http://deb.debian.org/debian bullseye/main arm64 imagemagick arm64 8:6.9.11.60+dfsg-1.3 [166 kB] Get: 193 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 194 http://deb.debian.org/debian bullseye/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 195 http://deb.debian.org/debian bullseye/main arm64 libc-ares2 arm64 1.17.1-1 [99.3 kB] Get: 196 http://deb.debian.org/debian bullseye/main arm64 libcmark-gfm0 arm64 0.29.0.gfm.0-6 [108 kB] Get: 197 http://deb.debian.org/debian bullseye/main arm64 libcmark-gfm-extensions0 arm64 0.29.0.gfm.0-6 [45.4 kB] Get: 198 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 199 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 200 http://deb.debian.org/debian bullseye/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 201 http://deb.debian.org/debian bullseye/main arm64 libjs-es5-shim all 4.5.15-1 [43.6 kB] Get: 202 http://deb.debian.org/debian bullseye/main arm64 libjs-highlight.js all 9.18.5+dfsg1-1 [397 kB] Get: 203 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 204 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-datatables all 1.10.21+dfsg-2 [138 kB] Get: 205 http://deb.debian.org/debian bullseye/main arm64 libjs-sifter.js all 0.6.0+dfsg-1 [12.1 kB] Get: 206 http://deb.debian.org/debian bullseye/main arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 207 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 208 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 209 http://deb.debian.org/debian bullseye/main arm64 libjs-json all 0~20190826+~1.0.5-2 [20.5 kB] Get: 210 http://deb.debian.org/debian bullseye/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 211 http://deb.debian.org/debian bullseye/main arm64 libjs-modernizr all 2.6.2+ds1-4 [47.1 kB] Get: 212 http://deb.debian.org/debian bullseye/main arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 213 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 214 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 215 http://deb.debian.org/debian bullseye/main arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 216 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 217 http://deb.debian.org/debian bullseye/main arm64 libnode72 arm64 12.21.0~dfsg-5 [7671 kB] Get: 218 http://deb.debian.org/debian bullseye/main arm64 libpaper1 arm64 1.1.28+b1 [21.4 kB] Get: 219 http://deb.debian.org/debian bullseye/main arm64 libpaper-utils arm64 1.1.28+b1 [18.3 kB] Get: 220 http://deb.debian.org/debian bullseye/main arm64 libxft2 arm64 2.3.2-2 [51.3 kB] Get: 221 http://deb.debian.org/debian bullseye/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 222 http://deb.debian.org/debian bullseye/main arm64 libtk8.6 arm64 8.6.11-2 [738 kB] Get: 223 http://deb.debian.org/debian bullseye/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get: 224 http://deb.debian.org/debian bullseye/main arm64 zip arm64 3.0-12 [228 kB] Get: 225 http://deb.debian.org/debian bullseye/main arm64 unzip arm64 6.0-26 [165 kB] Get: 226 http://deb.debian.org/debian bullseye/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 227 http://deb.debian.org/debian bullseye/main arm64 r-base-core arm64 4.0.4-1 [24.9 MB] Get: 228 http://deb.debian.org/debian bullseye/main arm64 r-cran-littler arm64 0.3.12-1 [95.1 kB] Get: 229 http://deb.debian.org/debian bullseye/main arm64 littler all 0.3.12-1 [15.6 kB] Get: 230 http://deb.debian.org/debian bullseye/main arm64 nodejs arm64 12.21.0~dfsg-5 [146 kB] Get: 231 http://deb.debian.org/debian bullseye/main arm64 node-highlight.js all 9.18.5+dfsg1-1 [333 kB] Get: 232 http://deb.debian.org/debian bullseye/main arm64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get: 233 http://deb.debian.org/debian bullseye/main arm64 pandoc-data all 2.9.2.1-1 [376 kB] Get: 234 http://deb.debian.org/debian bullseye/main arm64 pandoc arm64 2.9.2.1-1+b1 [22.8 MB] Get: 235 http://deb.debian.org/debian bullseye/main arm64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 236 http://deb.debian.org/debian bullseye/main arm64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 237 http://deb.debian.org/debian bullseye/main arm64 python3-appdirs all 1.4.4-1 [12.7 kB] Get: 238 http://deb.debian.org/debian bullseye/main arm64 python3-attr all 20.3.0-1 [52.9 kB] Get: 239 http://deb.debian.org/debian bullseye/main arm64 python3-tz all 2021.1-1 [34.8 kB] Get: 240 http://deb.debian.org/debian bullseye/main arm64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 241 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 242 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab-accel arm64 3.5.59-2 [38.6 kB] Get: 243 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3 [428 kB] Get: 244 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab all 3.5.59-2 [575 kB] Get: 245 http://deb.debian.org/debian bullseye/main arm64 python3-biopython arm64 1.78+dfsg-4 [1389 kB] Get: 246 http://deb.debian.org/debian bullseye/main arm64 python3-jmespath all 0.10.0-1 [21.7 kB] Get: 247 http://deb.debian.org/debian bullseye/main arm64 python3-botocore all 1.20.0+repack-1 [3863 kB] Get: 248 http://deb.debian.org/debian bullseye/main arm64 python3-s3transfer all 0.3.4-1 [48.0 kB] Get: 249 http://deb.debian.org/debian bullseye/main arm64 python3-boto3 all 1.13.14-1 [81.5 kB] Get: 250 http://deb.debian.org/debian bullseye/main arm64 python3-cffi-backend arm64 1.14.5-1 [86.0 kB] Get: 251 http://deb.debian.org/debian bullseye/main arm64 python3-colorama all 0.4.4-1 [28.5 kB] Get: 252 http://deb.debian.org/debian bullseye/main arm64 python3-click all 7.1.2-1 [75.7 kB] Get: 253 http://deb.debian.org/debian bullseye/main arm64 python3-commonmark all 0.9.1-3 [44.9 kB] Get: 254 http://deb.debian.org/debian bullseye/main arm64 python3-configargparse all 1.2.3-1 [25.2 kB] Get: 255 http://deb.debian.org/debian bullseye/main arm64 python3-datrie arm64 0.8.2-1+b1 [88.0 kB] Get: 256 http://deb.debian.org/debian bullseye/main arm64 python3-roman all 2.0.0-5 [9064 B] Get: 257 http://deb.debian.org/debian bullseye/main arm64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 258 http://deb.debian.org/debian bullseye/main arm64 python3-dropbox all 10.10.0-1 [465 kB] Get: 259 http://deb.debian.org/debian bullseye/main arm64 python3-itsdangerous all 1.1.0-3 [17.0 kB] Get: 260 http://deb.debian.org/debian bullseye/main arm64 python3-markupsafe arm64 1.1.1-1+b3 [15.2 kB] Get: 261 http://deb.debian.org/debian bullseye/main arm64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 262 http://deb.debian.org/debian bullseye/main arm64 python3-werkzeug all 1.0.1+dfsg1-2 [195 kB] Get: 263 http://deb.debian.org/debian bullseye/main arm64 python3-flask all 1.1.2-2 [99.0 kB] Get: 264 http://deb.debian.org/debian bullseye/main arm64 python3-smmap all 4.0.0-1 [21.0 kB] Get: 265 http://deb.debian.org/debian bullseye/main arm64 python3-gitdb all 4.0.5-1 [46.5 kB] Get: 266 http://deb.debian.org/debian bullseye/main arm64 python3-git all 3.1.14-1 [119 kB] Get: 267 http://deb.debian.org/debian bullseye/main arm64 python3-imagesize all 1.2.0-2 [5824 B] Get: 268 http://deb.debian.org/debian bullseye/main arm64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 269 http://deb.debian.org/debian bullseye/main arm64 python3-zipp all 1.0.0-3 [6060 B] Get: 270 http://deb.debian.org/debian bullseye/main arm64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 271 http://deb.debian.org/debian bullseye/main arm64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 272 http://deb.debian.org/debian bullseye/main arm64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get: 273 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 274 http://deb.debian.org/debian bullseye/main arm64 python3-pyrsistent arm64 0.15.5-1+b3 [58.2 kB] Get: 275 http://deb.debian.org/debian bullseye/main arm64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get: 276 http://deb.debian.org/debian bullseye/main arm64 python3-traitlets all 5.0.5-1 [84.4 kB] Get: 277 http://deb.debian.org/debian bullseye/main arm64 python3-jupyter-core all 4.7.1-1 [44.0 kB] Get: 278 http://deb.debian.org/debian bullseye/main arm64 python3-nbformat all 5.1.2-1 [51.6 kB] Get: 279 http://deb.debian.org/debian bullseye/main arm64 python3-packaging all 20.9-2 [33.5 kB] Get: 280 http://deb.debian.org/debian bullseye/main arm64 python3-pandas-lib arm64 1.1.5+dfsg-2 [2914 kB] Get: 281 http://deb.debian.org/debian bullseye/main arm64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 282 http://deb.debian.org/debian bullseye/main arm64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 283 http://deb.debian.org/debian bullseye/main arm64 python3-pulp all 1.6.0+dfsg1-5 [54.0 kB] Get: 284 http://deb.debian.org/debian bullseye/main arm64 python3-py all 1.10.0-1 [94.2 kB] Get: 285 http://deb.debian.org/debian bullseye/main arm64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 286 http://deb.debian.org/debian bullseye/main arm64 python3-pygraphviz arm64 1.7-2 [79.4 kB] Get: 287 http://deb.debian.org/debian bullseye/main arm64 python3-toml all 0.10.1-1 [15.9 kB] Get: 288 http://deb.debian.org/debian bullseye/main arm64 python3-pytest all 6.0.2-2 [211 kB] Get: 289 http://deb.debian.org/debian bullseye/main arm64 python3-pytools all 2021.1-2 [46.4 kB] Get: 290 http://deb.debian.org/debian bullseye/main arm64 python3-ratelimiter arm64 1.2.0.post0-1 [5504 B] Get: 291 http://deb.debian.org/debian bullseye/main arm64 sphinx-common all 3.4.3-2 [578 kB] Get: 292 http://deb.debian.org/debian bullseye/main arm64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 293 http://deb.debian.org/debian bullseye/main arm64 python3-sphinx all 3.4.3-2 [545 kB] Get: 294 http://deb.debian.org/debian bullseye/main arm64 python3-recommonmark all 0.6.0+ds-1 [17.2 kB] Get: 295 http://deb.debian.org/debian bullseye/main arm64 python3-tzlocal all 2.1-1 [18.5 kB] Get: 296 http://deb.debian.org/debian bullseye/main arm64 python3-rpy2 arm64 3.4.2-1 [183 kB] Get: 297 http://deb.debian.org/debian bullseye/main arm64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get: 298 http://deb.debian.org/debian bullseye/main arm64 python3-sphinx-argparse all 0.2.5-1 [35.9 kB] Get: 299 http://deb.debian.org/debian bullseye/main arm64 python3-sphinx-bootstrap-theme all 0.7.1-1 [427 kB] Get: 300 http://deb.debian.org/debian bullseye/main arm64 python3-sphinx-rtd-theme all 0.5.1+dfsg-1 [20.9 kB] Get: 301 http://deb.debian.org/debian bullseye/main arm64 python3-toposort all 1.6-1 [7620 B] Get: 302 http://deb.debian.org/debian bullseye/main arm64 python3-wrapt arm64 1.12.1-4+b1 [38.4 kB] Get: 303 http://deb.debian.org/debian bullseye/main arm64 python3-yaml arm64 5.3.1-5 [118 kB] Get: 304 http://deb.debian.org/debian bullseye/main arm64 r-cran-base64enc arm64 0.1-3-3 [27.8 kB] Get: 305 http://deb.debian.org/debian bullseye/main arm64 r-cran-bh all 1.74.0-1 [5196 B] Get: 306 http://deb.debian.org/debian bullseye/main arm64 r-cran-commonmark arm64 1.7-2 [100.0 kB] Get: 307 http://deb.debian.org/debian bullseye/main arm64 r-cran-crayon all 1.4.0-1 [143 kB] Get: 308 http://deb.debian.org/debian bullseye/main arm64 r-cran-digest arm64 0.6.27-1 [185 kB] Get: 309 http://deb.debian.org/debian bullseye/main arm64 r-cran-evaluate all 0.14-2 [81.1 kB] Get: 310 http://deb.debian.org/debian bullseye/main arm64 r-cran-fastmap arm64 1.1.0-1 [63.9 kB] Get: 311 http://deb.debian.org/debian bullseye/main arm64 r-cran-glue arm64 1.4.2-1 [138 kB] Get: 312 http://deb.debian.org/debian bullseye/main arm64 r-cran-highr all 0.8+dfsg-2 [40.1 kB] Get: 313 http://deb.debian.org/debian bullseye/main arm64 r-cran-rlang arm64 0.4.10-1 [1177 kB] Get: 314 http://deb.debian.org/debian bullseye/main arm64 r-cran-htmltools arm64 0.5.1.1-1 [241 kB] Get: 315 http://deb.debian.org/debian bullseye/main arm64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get: 316 http://deb.debian.org/debian bullseye/main arm64 r-cran-rcpp arm64 1.0.6-1 [2020 kB] Get: 317 http://deb.debian.org/debian bullseye/main arm64 r-cran-r6 all 2.5.0-1 [104 kB] Get: 318 http://deb.debian.org/debian bullseye/main arm64 r-cran-later arm64 1.1.0.1+dfsg-1 [112 kB] Get: 319 http://deb.debian.org/debian bullseye/main arm64 r-cran-magrittr arm64 2.0.1-1 [198 kB] Get: 320 http://deb.debian.org/debian bullseye/main arm64 r-cran-promises arm64 1.1.1+dfsg-1 [171 kB] Get: 321 http://deb.debian.org/debian bullseye/main arm64 r-cran-httpuv arm64 1.5.5+dfsg-1 [470 kB] Get: 322 http://deb.debian.org/debian bullseye/main arm64 r-cran-jsonlite arm64 1.7.2+dfsg-1 [445 kB] Get: 323 http://deb.debian.org/debian bullseye/main arm64 r-cran-xfun arm64 0.20-1 [288 kB] Get: 324 http://deb.debian.org/debian bullseye/main arm64 r-cran-mime arm64 0.9-1+b1 [35.4 kB] Get: 325 http://deb.debian.org/debian bullseye/main arm64 r-cran-markdown arm64 1.1+dfsg-1+b1 [123 kB] Get: 326 http://deb.debian.org/debian bullseye/main arm64 r-cran-stringi arm64 1.5.3-1 [705 kB] Get: 327 http://deb.debian.org/debian bullseye/main arm64 r-cran-stringr all 1.4.0-2 [199 kB] Get: 328 http://deb.debian.org/debian bullseye/main arm64 r-cran-yaml arm64 2.2.1-1+b1 [97.0 kB] Get: 329 http://deb.debian.org/debian bullseye/main arm64 r-cran-knitr all 1.31+dfsg-1 [833 kB] Get: 330 http://deb.debian.org/debian bullseye/main arm64 r-cran-tinytex all 0.29-1 [118 kB] Get: 331 http://deb.debian.org/debian bullseye/main arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 332 http://deb.debian.org/debian bullseye/main arm64 r-cran-sourcetools arm64 0.1.7-3 [44.5 kB] Get: 333 http://deb.debian.org/debian bullseye/main arm64 r-cran-withr all 2.4.1-1 [210 kB] Get: 334 http://deb.debian.org/debian bullseye/main arm64 r-cran-shiny all 1.5.0+dfsg-2 [3599 kB] Get: 335 http://deb.debian.org/debian bullseye/main arm64 r-cran-rmarkdown all 2.6+dfsg-1 [2160 kB] Get: 336 http://deb.debian.org/debian bullseye/main arm64 stress arm64 1.0.4-7 [21.6 kB] Fetched 186 MB in 9s (21.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../05-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../06-libfftw3-double3_3.3.8-2_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.8-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../07-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../08-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../09-libpng16-16_1.6.37-3_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../10-libfreetype6_2.10.4+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../11-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../13-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../14-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../15-libfontconfig1_2.13.1-4.2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.13.1-4.2) ... Selecting previously unselected package libaom0:arm64. Preparing to unpack .../16-libaom0_1.0.0.errata1-3_arm64.deb ... Unpacking libaom0:arm64 (1.0.0.errata1-3) ... Selecting previously unselected package libdav1d4:arm64. Preparing to unpack .../17-libdav1d4_0.7.1-3_arm64.deb ... Unpacking libdav1d4:arm64 (0.7.1-3) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../18-libde265-0_1.0.8-1_arm64.deb ... Unpacking libde265-0:arm64 (1.0.8-1) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../19-libnuma1_2.0.12-1+b1_arm64.deb ... Unpacking libnuma1:arm64 (2.0.12-1+b1) ... Selecting previously unselected package libx265-192:arm64. Preparing to unpack .../20-libx265-192_3.4-2_arm64.deb ... Unpacking libx265-192:arm64 (3.4-2) ... Selecting previously unselected package libheif1:arm64. Preparing to unpack .../21-libheif1_1.11.0-1_arm64.deb ... Unpacking libheif1:arm64 (1.11.0-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../22-libjbig0_2.1-3.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../23-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../24-liblcms2-2_2.12~rc1-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.12~rc1-2) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../25-libglib2.0-0_2.66.8-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.66.8-1) ... Selecting previously unselected package liblqr-1-0:arm64. Preparing to unpack .../26-liblqr-1-0_0.4.2-2.1_arm64.deb ... Unpacking liblqr-1-0:arm64 (0.4.2-2.1) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../27-libltdl7_2.4.6-15_arm64.deb ... Unpacking libltdl7:arm64 (2.4.6-15) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../28-libopenjp2-7_2.4.0-3_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.4.0-3) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../29-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../30-libwebp6_0.6.1-2.1_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../31-libtiff5_4.2.0-1_arm64.deb ... Unpacking libtiff5:arm64 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../32-libwebpdemux2_0.6.1-2.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../33-libwebpmux3_0.6.1-2.1_arm64.deb ... Unpacking libwebpmux3:arm64 (0.6.1-2.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../34-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../35-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../36-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../37-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../38-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../39-libx11-data_2%3a1.7.2-1_all.deb ... Unpacking libx11-data (2:1.7.2-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../40-libx11-6_2%3a1.7.2-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.7.2-1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../41-libxext6_2%3a1.3.3-1.1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1.1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../42-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../43-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package imagemagick-6-common. Preparing to unpack .../44-imagemagick-6-common_8%3a6.9.11.60+dfsg-1.3_all.deb ... Unpacking imagemagick-6-common (8:6.9.11.60+dfsg-1.3) ... Selecting previously unselected package libmagickcore-6.q16-6:arm64. Preparing to unpack .../45-libmagickcore-6.q16-6_8%3a6.9.11.60+dfsg-1.3_arm64.deb ... Unpacking libmagickcore-6.q16-6:arm64 (8:6.9.11.60+dfsg-1.3) ... Selecting previously unselected package libmagickwand-6.q16-6:arm64. Preparing to unpack .../46-libmagickwand-6.q16-6_8%3a6.9.11.60+dfsg-1.3_arm64.deb ... Unpacking libmagickwand-6.q16-6:arm64 (8:6.9.11.60+dfsg-1.3) ... Selecting previously unselected package node-normalize.css. Preparing to unpack .../47-node-normalize.css_8.0.1-3_all.deb ... Unpacking node-normalize.css (8.0.1-3) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../48-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../49-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21530 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../4-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../6-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21975 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package less. Preparing to unpack .../002-less_551-2_arm64.deb ... Unpacking less (551-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../003-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../004-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../005-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package openssl. Preparing to unpack .../006-openssl_1.1.1k-1_arm64.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../007-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... 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Setting up libjs-json (0~20190826+~1.0.5-2) ... Setting up libgraphite2-3:arm64 (1.3.14-1) ... Setting up liblcms2-2:arm64 (2.12~rc1-2) ... Setting up libpixman-1-0:arm64 (0.40.0-1) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up imagemagick-6-common (8:6.9.11.60+dfsg-1.3) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up libboost1.74-dev:arm64 (1.74.0-9) ... Setting up fonts-lato (2.0-2.1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hicolor-icon-theme (0.17-2) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libdatrie1:arm64 (0.2.13-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.2-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up stress (1.0.4-7) ... Setting up unzip (6.0-26) ... Setting up libaom0:arm64 (1.0.0.errata1-3) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up liblab-gamut1:arm64 (2.42.2-5) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up node-html5shiv (3.7.3+dfsg-3) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up less (551-2) ... Setting up gettext-base (0.21-4) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up libc-ares2:arm64 (1.17.1-1) ... Setting up file (1:5.39-3) ... Setting up libjs-modernizr (2.6.2+ds1-4) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libjs-es5-shim (4.5.15-1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up liberror-perl (0.17029-1) ... Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-4+b1) ... Setting up zip (3.0-12) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libuv1:arm64 (1.40.0-2) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libpathplan4:arm64 (2.42.2-5) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libfribidi0:arm64 (1.0.8-2) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up libtcl8.6:arm64 (8.6.11+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libcmark-gfm0:arm64 (0.29.0.gfm.0-6) ... Setting up libltdl7:arm64 (2.4.6-15) ... Setting up libfftw3-double3:arm64 (3.3.8-2) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up libnuma1:arm64 (2.0.12-1+b1) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up libjs-highlight.js (9.18.5+dfsg1-1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libdav1d4:arm64 (0.7.1-3) ... Setting up libopenjp2-7:arm64 (2.4.0-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up git-man (1:2.30.2-1) ... Setting up libthai-data (0.1.28-3) ... 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Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libprocps8:arm64 (2:3.3.17-5) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up r-cran-bh (1.74.0-1) ... Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up tcl8.6 (8.6.11+dfsg-1) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:arm64 (1.14-3) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libx265-192:arm64 (3.4-2) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Setting up libxcb-shm0:arm64 (1.14-3) ... Setting up libcmark-gfm-extensions0:arm64 (0.29.0.gfm.0-6) ... Setting up libnode72:arm64 (12.21.0~dfsg-5) ... Setting up libjs-jquery-datatables (1.10.21+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up coinor-libcoinutils3v5 (2.11.4+repack1-1) ... Setting up libthai0:arm64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up pandoc (2.9.2.1-1+b1) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up ucf (3.0043) ... Setting up git (1:2.30.2-1) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up coinor-libosi1v5:arm64 (0.108.6+repack1-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libgvpr2:arm64 (2.42.2-5) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up procps (2:3.3.17-5) ... Setting up libxslt1.1:arm64 (1.1.34-4) ... Setting up libcurl4:arm64 (7.74.0-1.3+b1) ... Setting up libx11-6:arm64 (2:1.7.2-1) ... Setting up libharfbuzz0b:arm64 (2.7.4-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:arm64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libheif1:arm64 (1.11.0-1) ... Setting up libxext6:arm64 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up nodejs (12.21.0~dfsg-5) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up coinor-libclp1 (1.17.5+repack1-1) ... Setting up sphinx-common (3.4.3-2) ... Setting up libxt6:arm64 (1:1.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up coinor-libcgl1 (0.60.3+repack1-2) ... Setting up python3.9 (3.9.2-1) ... Setting up coinor-libcbc3:arm64 (2.10.5+ds1-3) ... Setting up node-highlight.js (9.18.5+dfsg1-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.2-2) ... Setting up libxmu6:arm64 (2:1.1.2-2+b3) ... Setting up libtk8.6:arm64 (8.6.11-2) ... Setting up libpango-1.0-0:arm64 (1.46.2-3) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libxaw7:arm64 (2:1.0.13-1.1) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up libcairo2:arm64 (1.16.0-5) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-isodate (0.6.0-2) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.3) ... Setting up libmagickcore-6.q16-6:arm64 (8:6.9.11.60+dfsg-1.3) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up coinor-cbc (2.10.5+ds1-3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-humanfriendly (9.1-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-werkzeug (1.0.1+dfsg1-2) ... Setting up python3-jmespath (0.10.0-1) ... Setting up python3-reportlab-accel:arm64 (3.5.59-2) ... Setting up libgd3:arm64 (2.3.0-2) ... Setting up python3-idna (2.10-1) ... Setting up python3-wrapt (1.12.1-4+b1) ... Setting up python3-typing-extensions (3.7.4.3-1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-pyrsistent:arm64 (0.15.5-1+b3) ... Setting up python3-lxml:arm64 (4.6.3+dfsg-0.1) ... Setting up python3-rdflib (5.0.0-1.1) ... Setting up libmagickwand-6.q16-6:arm64 (8:6.9.11.60+dfsg-1.3) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-msgpack (1.0.0-6+b1) ... Setting up python3-datrie:arm64 (0.8.2-1+b1) ... Setting up python3-shellescape (3.4.1-4) ... Setting up libpangoft2-1.0-0:arm64 (1.46.2-3) ... Setting up environment-modules (4.6.1-1) ... Setting up python3-tzlocal (2.1-1) ... Setting up python3-argcomplete (1.8.1-1.5) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-coloredlogs (7.3-2) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-smmap (4.0.0-1) ... Setting up python3-mistune (0.8.4-4) ... Setting up python3-cffi-backend:arm64 (1.14.5-1) ... Setting up libpangocairo-1.0-0:arm64 (1.46.2-3) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-commonmark (0.9.1-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-toposort (1.6-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-configargparse (1.2.3-1) ... Setting up python3-arcp (0.2.1-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up python3-rdflib-jsonld (0.5.0-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.4.4-1) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-pulp (1.6.0+dfsg1-5) ... /usr/lib/python3/dist-packages/pulp/pulp.py:700: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self /usr/lib/python3/dist-packages/pulp/pulp.py:720: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self Setting up python3-alabaster (0.7.8-1.1) ... Setting up python3-mypy-extensions (0.4.3-2) ... Setting up python3-ruamel.yaml.clib:arm64 (0.2.2-1+b2) ... Setting up python3-itsdangerous (1.1.0-3) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-gitdb (4.0.5-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-click (7.1.2-1) ... Setting up python3-networkx (2.5+ds-2) ... Setting up python3-prov (1.5.2-2) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-sphinx-bootstrap-theme (0.7.1-1) ... Setting up python3-git (3.1.14-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up libgvc6 (2.42.2-5) ... Setting up r-cran-sourcetools (0.1.7-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up imagemagick-6.q16 (8:6.9.11.60+dfsg-1.3) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up python3-ruamel.yaml (0.16.12-2) ... Setting up python3-rpy2 (3.4.2-1) ... Setting up python3-traitlets (5.0.5-1) ... Setting up python3-cachecontrol (0.12.6-1) ... Setting up r-cran-commonmark (1.7-2) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up python3-jupyter-core (4.7.1-1) ... Setting up python3-dropbox (10.10.0-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up graphviz (2.42.2-5) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up littler (0.3.12-1) ... Setting up r-cran-xfun (0.20-1) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-mime (0.9-1+b1) ... Setting up python3-flask (1.1.2-2) ... Setting up python3-pydot (1.4.2-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-yaml (2.2.1-1+b1) ... Setting up python3-pandas-lib:arm64 (1.1.5+dfsg-2) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-highr (0.8+dfsg-2) ... Setting up python3-schema-salad (7.0.20210124093443-1) ... Setting up cwltool (3.0.20210124104916-3) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up r-cran-markdown (1.1+dfsg-1+b1) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up python3-botocore (1.20.0+repack-1) ... Setting up r-cran-later (1.1.0.1+dfsg-1) ... Setting up python3-pytools (2021.1-2) ... Setting up r-cran-htmltools (0.5.1.1-1) ... Setting up imagemagick (8:6.9.11.60+dfsg-1.3) ... Setting up r-cran-tinytex (0.29-1) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pygraphviz (1.7-2) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-s3transfer (0.3.4-1) ... Setting up python3-nbformat (5.1.2-1) ... Setting up r-cran-promises (1.1.1+dfsg-1) ... Setting up python3-boto3 (1.13.14-1) ... Setting up r-cran-knitr (1.31+dfsg-1) ... Setting up r-cran-httpuv (1.5.5+dfsg-1) ... Setting up r-cran-shiny (1.5.0+dfsg-2) ... Setting up r-cran-rmarkdown (2.6+dfsg-1) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Setting up python3-sphinx-rtd-theme (0.5.1+dfsg-1) ... Setting up python3-recommonmark (0.6.0+ds-1) ... Setting up python3-sphinx-argparse (0.2.5-1) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/snakemake-5.24.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_5.24.1-2_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 5.24.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/snakemake-5.24.1' dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/utils.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/io.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/wrapper.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/workflow.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/stats.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/shell.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/script.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/scheduler.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/rules.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/resources.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/persistence.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/parser.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/output_index.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/notebook.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/logging.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/jobs.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/gui.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/exceptions.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/decorators.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/dag.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/cwl.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/common.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/checkpoints.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/benchmark.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/_version.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/__main__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/__init__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake creating /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/S3Mocked.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/webdav.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/iRODS.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/gridftp.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/gfal.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/dropbox.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/__init__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/XRootD.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/SFTP.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/S3.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/NCBI.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/HTTP.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/GS.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/FTP.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/EGA.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote copying snakemake/remote/AzBlob.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote creating /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report copying snakemake/report/__init__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report creating /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching copying snakemake/caching/remote.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching copying snakemake/caching/local.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching copying snakemake/caching/hash.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching copying snakemake/caching/__init__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching creating /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment copying snakemake/deployment/singularity.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment copying snakemake/deployment/env_modules.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment copying snakemake/deployment/conda.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment copying snakemake/deployment/__init__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment creating /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting copying snakemake/linting/snakefiles.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting copying snakemake/linting/rules.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting copying snakemake/linting/links.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting copying snakemake/linting/__init__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting creating /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors copying snakemake/executors/google_lifesciences.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors copying snakemake/executors/__init__.py -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors copying snakemake/report.css -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/gui.html -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake copying snakemake/report/table.html -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report copying snakemake/report/report.html -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report copying snakemake/executors/jobscript.sh -> /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors UPDATING /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py set /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py to '5.24.1' PATH=/build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin:/build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin:/build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ PYTHONPATH=/build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build \ python3 setup.py build_sphinx running build_sphinx Running Sphinx v3.4.3 making output directory... done /build/snakemake-5.24.1/docs/conf.py:286: RemovedInSphinx40Warning: The app.add_stylesheet() is deprecated. Please use app.add_css_file() instead. app.add_stylesheet('sphinx-argparse.css') building [mo]: targets for 0 po files that are out of date building [html]: targets for 37 source files that are out of date updating environment: [new config] 37 added, 0 changed, 0 removed reading sources... [ 2%] api_reference/internal/modules reading sources... [ 5%] api_reference/internal/snakemake reading sources... [ 8%] api_reference/internal/snakemake.remote reading sources... [ 10%] api_reference/internal/snakemake.report reading sources... [ 13%] api_reference/snakemake reading sources... [ 16%] api_reference/snakemake_utils reading sources... [ 18%] executing/caching reading sources... [ 21%] executing/cli reading sources... [ 24%] executing/cloud reading sources... [ 27%] executing/cluster reading sources... [ 29%] executing/interoperability reading sources... [ 32%] executor_tutorial/azure_aks reading sources... [ 35%] executor_tutorial/google_lifesciences reading sources... [ 37%] executor_tutorial/tutorial reading sources... [ 40%] getting_started/installation reading sources... [ 43%] index reading sources... [ 45%] project_info/authors reading sources... [ 48%] project_info/citations reading sources... [ 51%] project_info/contributing reading sources... [ 54%] project_info/faq reading sources... [ 56%] project_info/history reading sources... [ 59%] project_info/license reading sources... [ 62%] project_info/more_resources reading sources... [ 64%] snakefiles/configuration reading sources... [ 67%] snakefiles/deployment reading sources... [ 70%] snakefiles/modularization reading sources... [ 72%] snakefiles/remote_files reading sources... [ 75%] snakefiles/reporting reading sources... [ 78%] snakefiles/rules reading sources... [ 81%] snakefiles/utils reading sources... [ 83%] snakefiles/writing_snakefiles reading sources... [ 86%] tutorial/additional_features reading sources... [ 89%] tutorial/advanced reading sources... [ 91%] tutorial/basics reading sources... [ 94%] tutorial/setup reading sources... [ 97%] tutorial/short reading sources... [100%] tutorial/tutorial WARNING: autodoc: failed to import module 'conda' from module 'snakemake'; the following exception was raised: No module named 'snakemake.conda' /build/snakemake-5.24.1/snakemake/exceptions.py:docstring of snakemake.exceptions.print_exception:6: WARNING: Unexpected indentation. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:5: WARNING: Unexpected indentation. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:3: WARNING: Inline emphasis start-string without end-string. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:7: WARNING: Block quote ends without a blank line; unexpected unindent. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:8: WARNING: Inline strong start-string without end-string. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.limit:5: WARNING: Unexpected indentation. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.limit:3: WARNING: Inline strong start-string without end-string. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.report:3: WARNING: Inline emphasis start-string without end-string. /build/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.report:10: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'singularity' from module 'snakemake'; the following exception was raised: No module named 'snakemake.singularity' WARNING: autodoc: failed to import module 'FTP' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/build/snakemake-5.24.1/snakemake/remote/FTP.py", line 20, in import ftputil ModuleNotFoundError: No module named 'ftputil' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/FTP.py", line 23, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'ftputil' must be installed to use FTP remote() file functionality. No module named 'ftputil' WARNING: autodoc: failed to import module 'GS' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/build/snakemake-5.24.1/snakemake/remote/GS.py", line 18, in import google.cloud ModuleNotFoundError: No module named 'google' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/GS.py", line 23, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'google-cloud-sdk' and `google-crc32c` need to be installed to use GS remote() file functionality. No module named 'google' /build/snakemake-5.24.1/snakemake/remote/NCBI.py:docstring of snakemake.remote.NCBI.NCBIHelper.fetch_from_ncbi:3: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'S3Mocked' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/build/snakemake-5.24.1/snakemake/remote/S3Mocked.py", line 27, in from moto import mock_s3 ModuleNotFoundError: No module named 'moto' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/S3Mocked.py", line 29, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'moto' and boto3' need to be installed to use S3Mocked remote() file functionality. No module named 'moto' WARNING: autodoc: failed to import module 'SFTP' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/build/snakemake-5.24.1/snakemake/remote/SFTP.py", line 16, in import pysftp ModuleNotFoundError: No module named 'pysftp' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/SFTP.py", line 18, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'pysftp' must be installed to use SFTP remote() file functionality. No module named 'pysftp' WARNING: autodoc: failed to import module 'XRootD' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/build/snakemake-5.24.1/snakemake/remote/XRootD.py", line 14, in from XRootD import client ModuleNotFoundError: No module named 'XRootD' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/XRootD.py", line 17, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'XRootD' must be installed to use XRootD remote() file functionality. No module named 'XRootD' WARNING: autodoc: failed to import module 'gfal' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/gfal.py", line 21, in raise WorkflowError( snakemake.exceptions.WorkflowError: The gfal-* commands need to be available for gfal remote support. WARNING: autodoc: failed to import module 'gridftp' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/gridftp.py", line 18, in raise WorkflowError( snakemake.exceptions.WorkflowError: The globus-url-copy command has to be available for gridftp remote support. WARNING: autodoc: failed to import module 'iRODS' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/build/snakemake-5.24.1/snakemake/remote/iRODS.py", line 20, in from irods.session import iRODSSession ModuleNotFoundError: No module named 'irods' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/iRODS.py", line 26, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'python-irodsclient' must be installed to use iRODS remote() file functionality. No module named 'irods' WARNING: autodoc: failed to import module 'webdav' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/build/snakemake-5.24.1/snakemake/remote/webdav.py", line 18, in import aioeasywebdav ModuleNotFoundError: No module named 'aioeasywebdav' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module return importlib.import_module(modname) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 790, in exec_module File "", line 228, in _call_with_frames_removed File "/build/snakemake-5.24.1/snakemake/remote/webdav.py", line 21, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'aioeasywebdav' and 'asyncio' must be present to use WebDAV remote() file functionality. No module named 'aioeasywebdav' /build/snakemake-5.24.1/snakemake/__init__.py:docstring of snakemake.snakemake:1: WARNING: duplicate object description of snakemake.snakemake, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils:1: WARNING: duplicate object description of snakemake.utils, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.AlwaysQuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.AlwaysQuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.QuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.QuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.R:1: WARNING: duplicate object description of snakemake.utils.R, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter.format_element:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter.format_element, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.argvquote:1: WARNING: duplicate object description of snakemake.utils.argvquote, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.available_cpu_count:1: WARNING: duplicate object description of snakemake.utils.available_cpu_count, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.format:1: WARNING: duplicate object description of snakemake.utils.format, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.linecount:1: WARNING: duplicate object description of snakemake.utils.linecount, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.listfiles:1: WARNING: duplicate object description of snakemake.utils.listfiles, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.makedirs:1: WARNING: duplicate object description of snakemake.utils.makedirs, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.min_version:1: WARNING: duplicate object description of snakemake.utils.min_version, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.os_sync:1: WARNING: duplicate object description of snakemake.utils.os_sync, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.read_job_properties:1: WARNING: duplicate object description of snakemake.utils.read_job_properties, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.report:1: WARNING: duplicate object description of snakemake.utils.report, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.simplify_path:1: WARNING: duplicate object description of snakemake.utils.simplify_path, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.update_config:1: WARNING: duplicate object description of snakemake.utils.update_config, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.validate:1: WARNING: duplicate object description of snakemake.utils.validate, other instance in api_reference/internal/snakemake, use :noindex: for one of them /build/snakemake-5.24.1/docs/executing/cli.rst:115: WARNING: Inline literal start-string without end-string. /build/snakemake-5.24.1/docs/executing/cli.rst:163: WARNING: Unknown directive type "argparse". .. argparse:: :module: snakemake :func: get_argument_parser :prog: snakemake All command line options can be printed by calling ``snakemake -h``. /build/snakemake-5.24.1/docs/executor_tutorial/azure_aks.rst:181: WARNING: Unexpected indentation. /build/snakemake-5.24.1/docs/executor_tutorial/azure_aks.rst:29: WARNING: Unknown target name: "python". /build/snakemake-5.24.1/docs/executor_tutorial/azure_aks.rst:30: WARNING: Unknown target name: "snakemake". /build/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:114: WARNING: Unexpected indentation. /build/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:115: WARNING: Block quote ends without a blank line; unexpected unindent. /build/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:229: WARNING: Unexpected indentation. /build/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:230: WARNING: Block quote ends without a blank line; unexpected unindent. /build/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:16: WARNING: Unknown target name: "python". /build/snakemake-5.24.1/docs/index.rst:5: WARNING: Duplicate explicit target name: "bioconda". /build/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". CHANGELOG.rst:125: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:136: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:148: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:178: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:268: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:277: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:295: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:311: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:340: WARNING: Bullet list ends without a blank line; unexpected unindent. CHANGELOG.rst:378: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/snakemake-5.24.1/docs/project_info/history.rst:7: WARNING: Duplicate explicit target name: "the docs". /build/snakemake-5.24.1/docs/project_info/history.rst:7: WARNING: Duplicate explicit target name: "the docs". /build/snakemake-5.24.1/docs/snakefiles/modularization.rst:7: WARNING: Duplicate explicit target name: "cwl". /build/snakemake-5.24.1/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.24.1/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.24.1/docs/tutorial/basics.rst:376: WARNING: Mismatch: both interpreted text role prefix and reference suffix. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] api_reference/internal/modules writing output... [ 5%] api_reference/internal/snakemake writing output... [ 8%] api_reference/internal/snakemake.remote writing output... [ 10%] api_reference/internal/snakemake.report writing output... [ 13%] api_reference/snakemake writing output... [ 16%] api_reference/snakemake_utils writing output... [ 18%] executing/caching writing output... [ 21%] executing/cli writing output... [ 24%] executing/cloud writing output... [ 27%] executing/cluster writing output... [ 29%] executing/interoperability writing output... [ 32%] executor_tutorial/azure_aks writing output... [ 35%] executor_tutorial/google_lifesciences writing output... [ 37%] executor_tutorial/tutorial writing output... [ 40%] getting_started/installation writing output... [ 43%] index writing output... [ 45%] project_info/authors writing output... [ 48%] project_info/citations writing output... [ 51%] project_info/contributing writing output... [ 54%] project_info/faq writing output... [ 56%] project_info/history writing output... [ 59%] project_info/license writing output... [ 62%] project_info/more_resources writing output... [ 64%] snakefiles/configuration writing output... [ 67%] snakefiles/deployment writing output... [ 70%] snakefiles/modularization writing output... [ 72%] snakefiles/remote_files writing output... [ 75%] snakefiles/reporting writing output... [ 78%] snakefiles/rules writing output... [ 81%] snakefiles/utils writing output... [ 83%] snakefiles/writing_snakefiles writing output... [ 86%] tutorial/additional_features writing output... [ 89%] tutorial/advanced writing output... [ 91%] tutorial/basics writing output... [ 94%] tutorial/setup writing output... [ 97%] tutorial/short writing output... [100%] tutorial/tutorial /build/snakemake-5.24.1/docs/snakefiles/rules.rst:690: WARNING: undefined label: snakefiles_external-scripts generating indices... genindex py-modindex done highlighting module code... [ 3%] snakemake highlighting module code... [ 6%] snakemake.benchmark highlighting module code... [ 9%] snakemake.checkpoints highlighting module code... [ 12%] snakemake.common highlighting module code... [ 16%] snakemake.cwl highlighting module code... [ 19%] snakemake.dag highlighting module code... [ 22%] snakemake.decorators highlighting module code... [ 25%] snakemake.exceptions highlighting module code... [ 29%] snakemake.executors highlighting module code... [ 32%] snakemake.gui highlighting module code... [ 35%] snakemake.io highlighting module code... [ 38%] snakemake.jobs highlighting module code... [ 41%] snakemake.logging highlighting module code... [ 45%] snakemake.output_index highlighting module code... [ 48%] snakemake.parser highlighting module code... [ 51%] snakemake.persistence highlighting module code... [ 54%] snakemake.remote highlighting module code... [ 58%] snakemake.remote.EGA highlighting module code... [ 61%] snakemake.remote.HTTP highlighting module code... [ 64%] snakemake.remote.NCBI highlighting module code... [ 67%] snakemake.remote.S3 highlighting module code... [ 70%] snakemake.remote.dropbox highlighting module code... [ 74%] snakemake.report highlighting module code... [ 77%] snakemake.rules highlighting module code... [ 80%] snakemake.scheduler highlighting module code... [ 83%] snakemake.script highlighting module code... [ 87%] snakemake.shell highlighting module code... [ 90%] snakemake.stats highlighting module code... [ 93%] snakemake.utils highlighting module code... [ 96%] snakemake.workflow highlighting module code... [100%] snakemake.wrapper writing additional pages... search done copying images... [ 14%] executor_tutorial/workflow/upload-google-storage.png copying images... [ 28%] executor_tutorial/workflow/quals.svg copying images... [ 42%] executor_tutorial/workflow/results-google-storage.png copying images... [ 57%] project_info/img/idea.png copying images... [ 71%] snakefiles/images/snakemake-notebook-demo.gif copying images... [ 85%] tutorial/workflow/dag_index.png copying images... [100%] tutorial/workflow/dag_call.png copying downloadable files... [ 50%] ../tests/test_report/custom-stylesheet.css copying downloadable files... [100%] ../tests/test_report/expected-results/report.html copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 73 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/build/snakemake-5.24.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/snakemake-5.24.1' . /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test I: pybuild pybuild:284: chmod +x /build/snakemake-5.24.1/bin/snakemake; cp -r /build/snakemake-5.24.1/bin /build/snakemake-5.24.1/tests /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build I: pybuild base:232: python3.9 -m pytest -v tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_ancient' ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache rootdir: /build/snakemake-5.24.1 collecting ... collected 209 items / 36 deselected / 173 selected tests/test_expand.py::test_simple_expand PASSED [ 0%] tests/test_expand.py::test_allow_missing PASSED [ 1%] tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] tests/test_io.py::test_wildcard_regex PASSED [ 2%] tests/test_io.py::test_expand PASSED [ 2%] tests/test_kubernetes.py::test_kubernetes_plain SKIPPED [ 3%] tests/test_kubernetes.py::test_kubernetes_conda SKIPPED [ 4%] tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED [ 4%] tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 5%] 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tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 13%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 14%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 15%] tests/test_linting.py::test_lint[long_run-positive] PASSED [ 15%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 16%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 16%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 17%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 17%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 18%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 19%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 19%] tests/test_linting.py::test_lint[dynamic-positive] PASSED [ 20%] tests/test_linting.py::test_lint[dynamic-negative] PASSED [ 20%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 21%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 21%] tests/test_schema.py::test_config PASSED [ 22%] tests/test_schema.py::test_config_ref PASSED [ 23%] tests/test_schema.py::test_dataframe PASSED [ 23%] tests/testapi.py::test_keep_logger PASSED [ 24%] tests/testapi.py::test_run_script_directive PASSED [ 24%] tests/tests.py::test_list_untracked PASSED [ 25%] tests/tests.py::test_delete_all_output PASSED [ 26%] tests/tests.py::test_github_issue_14 PASSED [ 26%] tests/tests.py::test_issue956 PASSED [ 27%] tests/tests.py::test01 PASSED [ 27%] tests/tests.py::test02 PASSED [ 28%] tests/tests.py::test03 PASSED [ 28%] tests/tests.py::test04 PASSED [ 29%] tests/tests.py::test05 PASSED [ 30%] tests/tests.py::test06 PASSED [ 30%] tests/tests.py::test07 PASSED [ 31%] tests/tests.py::test08 PASSED [ 31%] tests/tests.py::test09 PASSED [ 32%] tests/tests.py::test10 PASSED [ 32%] tests/tests.py::test11 PASSED [ 33%] tests/tests.py::test12 PASSED [ 34%] tests/tests.py::test13 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[ 69%] tests/tests.py::test_issue260 PASSED [ 70%] tests/tests.py::test_run_namedlist PASSED [ 71%] tests/tests.py::test_gs_requester_pays SKIPPED [ 71%] tests/tests.py::test_profile PASSED [ 72%] tests/tests.py::test_issue612 PASSED [ 72%] tests/tests.py::test_bash PASSED [ 73%] tests/tests.py::test_inoutput_is_path PASSED [ 73%] tests/tests.py::test_log_input PASSED [ 74%] tests/tests.py::test_issue805 PASSED [ 75%] tests/tests.py::test_pathlib PASSED [ 75%] tests/tests.py::test_pathlib_missing_file PASSED [ 76%] tests/tests.py::test_group_jobs PASSED [ 76%] tests/tests.py::test_group_job_fail PASSED [ 77%] tests/tests.py::test_pipes PASSED [ 78%] tests/tests.py::test_pipes_fail PASSED [ 78%] tests/tests.py::test_validate PASSED [ 79%] tests/tests.py::test_validate_fail PASSED [ 79%] tests/tests.py::test_issue854 PASSED [ 80%] tests/tests.py::test_issue850 PASSED [ 80%] tests/tests.py::test_issue860 PASSED [ 81%] tests/tests.py::test_issue894 PASSED [ 82%] tests/tests.py::test_issue584 PASSED [ 82%] tests/tests.py::test_issue912 PASSED [ 83%] tests/tests.py::test_job_properties PASSED [ 83%] tests/tests.py::test_issue916 PASSED [ 84%] tests/tests.py::test_issue930 PASSED [ 84%] tests/tests.py::test_issue1037 PASSED [ 85%] tests/tests.py::test_issue1046 PASSED [ 86%] tests/tests.py::test_checkpoints PASSED [ 86%] tests/tests.py::test_checkpoints_dir PASSED [ 87%] tests/tests.py::test_issue1092 PASSED [ 87%] tests/tests.py::test_issue958 PASSED [ 88%] tests/tests.py::test_issue471 PASSED [ 89%] tests/tests.py::test_issue1085 PASSED [ 89%] tests/tests.py::test_pipes2 PASSED [ 90%] tests/tests.py::test_expand_flag PASSED [ 90%] tests/tests.py::test_issue1284 PASSED [ 91%] tests/tests.py::test_issue1281 PASSED [ 91%] tests/tests.py::test_filegraph PASSED [ 92%] tests/tests.py::test_batch PASSED [ 93%] tests/tests.py::test_batch_final PASSED [ 93%] tests/tests.py::test_batch_fail PASSED [ 94%] tests/tests.py::test_github_issue52 PASSED [ 94%] tests/tests.py::test_envvars PASSED [ 95%] tests/tests.py::test_github_issue105 PASSED [ 95%] tests/tests.py::test_output_file_cache PASSED [ 96%] tests/tests.py::test_multiext PASSED [ 97%] tests/tests.py::test_core_dependent_threads PASSED [ 97%] tests/tests.py::test_env_modules PASSED [ 98%] tests/tests.py::test_linting PASSED [ 98%] tests/tests.py::test_string_resources PASSED [ 99%] tests/tests.py::test_github_issue456 PASSED [100%] =============================== warnings summary =============================== tests/testapi.py::test_keep_logger /usr/lib/python3/dist-packages/ratelimiter.py:127: DeprecationWarning: "@coroutine" decorator is deprecated since Python 3.8, use "async def" instead __aexit__ = asyncio.coroutine(__exit__) tests/testapi.py::test_keep_logger /usr/lib/python3/dist-packages/pulp/solvers.py:63: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser({'here':here, tests/testapi.py::test_keep_logger /usr/lib/python3/dist-packages/pulp/pulp.py:102: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working from collections import Iterable tests/tests.py::test_validate /build/snakemake-5.24.1/snakemake/utils.py:79: DeprecationWarning: The metaschema specified by $schema was not found. Using the latest draft to validate, but this will raise an error in the future. Validator = validators.validator_for(schema) -- Docs: https://docs.pytest.org/en/stable/warnings.html ==== 165 passed, 8 skipped, 36 deselected, 4 warnings in 671.91s (0:11:11) ===== I: pybuild pybuild:310: rm -fr /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/tests /build/snakemake-5.24.1/tests/test_filegraph/.snakemake/ /build/snakemake-5.24.1/tests/linting/*/.snakemake/ make[1]: Leaving directory '/build/snakemake-5.24.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/snakemake-5.24.1' dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/snakemake-5.24.1/debian/snakemake running install running build running build_py UPDATING /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py set /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py to '5.24.1' running install_lib creating /build/snakemake-5.24.1/debian/snakemake/usr creating /build/snakemake-5.24.1/debian/snakemake/usr/lib creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9 creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/__main__.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/resources.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/checkpoints.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/cwl.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/notebook.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/persistence.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/parser.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/stats.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/scheduler.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/output_index.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/script.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/wrapper.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/jobs.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/dag.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/utils.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/shell.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/exceptions.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/io.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/rules.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/_version.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/common.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/logging.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/workflow.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/gui.html -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report.css -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/__pycache__/google_lifesciences.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/jobscript.sh -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/__init__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/google_lifesciences.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/google_lifesciences_helper.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/__init__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/links.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/rules.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/snakefiles.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__pycache__/conda.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__pycache__/singularity.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__init__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/conda.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/env_modules.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/singularity.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/remote.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/local.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/hash.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__ copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__init__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/hash.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/local.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/remote.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report/report.html -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report/table.html -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report/__init__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report creating /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/AzBlob.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/EGA.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/FTP.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/GS.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/HTTP.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/NCBI.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/S3.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/SFTP.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/XRootD.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/__init__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/dropbox.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/gfal.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/gridftp.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/iRODS.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/webdav.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/S3Mocked.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__init__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__main__.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/benchmark.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/checkpoints.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/common.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/cwl.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/dag.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/decorators.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/exceptions.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/gui.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/jobs.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/logging.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/notebook.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/output_index.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/parser.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/persistence.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/resources.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/rules.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/scheduler.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/script.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/shell.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/stats.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/workflow.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/wrapper.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/io.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake copying /build/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/utils.py -> /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/_version.py to _version.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__init__.py to __init__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/google_lifesciences.py to google_lifesciences.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/google_lifesciences_helper.py to google_lifesciences_helper.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/__init__.py to __init__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/links.py to links.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/rules.py to rules.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/snakefiles.py to snakefiles.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__init__.py to __init__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/conda.py to conda.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/env_modules.py to env_modules.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/singularity.py to singularity.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__init__.py to __init__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/hash.py to hash.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/local.py to local.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/remote.py to remote.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report/__init__.py to __init__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/AzBlob.py to AzBlob.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/EGA.py to EGA.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/FTP.py to FTP.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/GS.py to GS.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/HTTP.py to HTTP.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/NCBI.py to NCBI.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/S3.py to S3.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/SFTP.py to SFTP.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/XRootD.py to XRootD.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/__init__.py to __init__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/dropbox.py to dropbox.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/gfal.py to gfal.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/gridftp.py to gridftp.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/iRODS.py to iRODS.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/webdav.py to webdav.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__init__.py to __init__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__main__.py to __main__.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/benchmark.py to benchmark.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/checkpoints.py to checkpoints.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/common.py to common.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/cwl.py to cwl.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/dag.py to dag.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/decorators.py to decorators.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/exceptions.py to exceptions.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/gui.py to gui.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/jobs.py to jobs.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/logging.py to logging.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/notebook.py to notebook.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/output_index.py to output_index.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/parser.py to parser.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/persistence.py to persistence.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/resources.py to resources.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/rules.py to rules.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/scheduler.py to scheduler.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/script.py to script.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/shell.py to shell.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/stats.py to stats.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/workflow.py to workflow.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/wrapper.py to wrapper.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/io.py to io.cpython-39.pyc byte-compiling /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/utils.py to utils.cpython-39.pyc running install_egg_info running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to /build/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake-5.24.1.egg-info Skipping SOURCES.txt running install_scripts Installing snakemake script to /build/snakemake-5.24.1/debian/snakemake/usr/bin Installing snakemake-bash-completion script to /build/snakemake-5.24.1/debian/snakemake/usr/bin find . -name '__pycache__' | xargs rm -Rf find . -name '*.pyc' | xargs rm -Rf find debian -name '.gitignore' | xargs rm -Rf make[1]: Leaving directory '/build/snakemake-5.24.1' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package snakemake: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'snakemake' in '../snakemake_5.24.1-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../snakemake_5.24.1-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: * system-pbuilder-build-snakemake_5.24.1\x2d2-22862.slice Loaded: loaded Active: active since Wed 2022-09-21 18:25:00 -12; 15min ago Tasks: 1 CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-snakemake_5.24.1\x2d2.slice/system-pbuilder-build-snakemake_5.24.1\x2d2-22862.slice `-run-rb91b6df31df1474784fa57bee3017deb.scope `-27670 /bin/bash -c set -euo pipefail; grep 1 < test.1.txt > test.1.out Sep 21 18:25:00 codethink15-arm64 systemd[1]: Created slice system-pbuilder-build-snakemake_5.24.1\x2d2-22862.slice. I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22862 and its subdirectories I: Current time: Wed Sep 21 18:40:27 -12 2022 I: pbuilder-time-stamp: 1663828827 Fri Aug 20 00:17:30 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Fri Aug 20 00:17:30 UTC 2021 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Fri Aug 20 00:35:24 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Fri Aug 20 00:35:25 UTC 2021 I: snakemake_5.24.1-2_arm64.changes: Format: 1.8 Date: Mon, 12 Apr 2021 17:17:32 +0200 Source: snakemake Binary: snakemake Architecture: all Version: 5.24.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: snakemake - pythonic workflow management system Closes: 986768 Changes: snakemake (5.24.1-2) unstable; urgency=medium . * Team upload. * Skip tests accessing remote locations Closes: #986768 Checksums-Sha1: 014c31791cd18d71d55244d6e0dcf1175d889c6c 6107188 snakemake_5.24.1-2_all.deb 051f1d576f145140036a7ba267ae4fe8f5baf34c 14266 snakemake_5.24.1-2_arm64.buildinfo Checksums-Sha256: 9295b92f0191bc35277c3531f223ab947e5f825902cccacb884cccfa5e41ff07 6107188 snakemake_5.24.1-2_all.deb 412c70df81e2d3b479fc96e1d62abc14a4241cb6322c1e1331ef52fcde825368 14266 snakemake_5.24.1-2_arm64.buildinfo Files: 637496914f29fdc326848f8c74959383 6107188 science optional snakemake_5.24.1-2_all.deb ceef89e9ffbe3c280cc4f632ee953c29 14266 science optional snakemake_5.24.1-2_arm64.buildinfo Fri Aug 20 00:35:31 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.m5PMxoZlZe/snakemake_5.24.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.m5PMxoZlZe/snakemake_5.24.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.m5PMxoZlZe/snakemake_5.24.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.m5PMxoZlZe/b1/snakemake_5.24.1-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.m5PMxoZlZe/b2/snakemake_5.24.1-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 6.167s) 6.167s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.659s) 0.658s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Aug 20 00:36:36 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 20 00:36:36 UTC 2021 I: snakemake from bullseye built successfully and reproducibly on arm64. Fri Aug 20 00:36:41 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Aug 20 00:36:42 UTC 2021 I: Submitting 16K b1/snakemake_5.24.1-2_arm64.buildinfo.asc Fri Aug 20 00:36:46 UTC 2021 I: Submitting 16K b2/snakemake_5.24.1-2_arm64.buildinfo.asc Fri Aug 20 00:36:51 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 20 00:36:51 UTC 2021 I: Done submitting .buildinfo files. Fri Aug 20 00:36:51 UTC 2021 I: Removing signed snakemake_5.24.1-2_arm64.buildinfo.asc files: removed './b1/snakemake_5.24.1-2_arm64.buildinfo.asc' removed './b2/snakemake_5.24.1-2_arm64.buildinfo.asc'