Sat Sep 25 08:31:49 UTC 2021 I: starting to build bppsuite/bullseye/armhf on jenkins on '2021-09-25 08:31' Sat Sep 25 08:31:49 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_43/4321/console.log Sat Sep 25 08:31:49 UTC 2021 I: Downloading source for bullseye/bppsuite=2.4.1-3 --2021-09-25 08:31:49-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/bppsuite/bppsuite_2.4.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2214 (2.2K) Saving to: ‘bppsuite_2.4.1-3.dsc’ 0K .. 100% 171M=0s 2021-09-25 08:31:49 (171 MB/s) - ‘bppsuite_2.4.1-3.dsc’ saved [2214/2214] Sat Sep 25 08:31:49 UTC 2021 I: bppsuite_2.4.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bppsuite Binary: bppsuite, bppsuite-examples Architecture: any all Version: 2.4.1-3 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille , Pranav Ballaney Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bppsuite Vcs-Git: https://salsa.debian.org/med-team/bppsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev (>= 2.4.0), libbpp-popgen-dev (>= 2.4.0) Package-List: bppsuite deb science optional arch=any bppsuite-examples deb science optional arch=all Checksums-Sha1: 7ca13e39f3db596709d5eac1abee2f18c5147966 214404 bppsuite_2.4.1.orig.tar.gz 8e8b2a92541c9ebee5b5718a54fc4cdb3687eac5 67384 bppsuite_2.4.1-3.debian.tar.xz Checksums-Sha256: 0485adcc17e37439069d27e4fac144e5ae38036ba21f31e6d21f070ce4ea5199 214404 bppsuite_2.4.1.orig.tar.gz d48eff517ee17632ee32da981b56a725aa9f71fca4b30813fc9bd0f328afaf2f 67384 bppsuite_2.4.1-3.debian.tar.xz Files: d254ffd9e121b408aed36f49e62920d1 214404 bppsuite_2.4.1.orig.tar.gz 377689bcdb82d3e6a7806f0737c0e6f4 67384 bppsuite_2.4.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9g2AAOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGctA//e4XgCfVOdg72kV6GNK8H26FxwA+SXJy9YQIx A1nB3WBN+BIN3gLqQpBDlxA4bg8Qz2T5sSoDLhWVpbalZA9+qqlxI+wIv/PIGDK9 yZB41XmTLYcTL6J8jWeuxEvHmR6x155/Po98nF7nytD0sI7Oxu88pp/n0DWCujYF 8uu5CXIOGg/cxZWhdXX1kBZoHBqQ2jMR9LZ7V+A5bvOdHLa4S5Euqdd1Rz05K769 ibpJzml/jGITUhU3lZ5Lugon6Z0tH4MAOMjHAdvq6TaRj2nqdas+fadbh3DWuwwT HQoKpRftqCXIlDjz3sjqzBZCY+2PAWa+ow2Slf7CLFpwu0mjzwgJg6K9TSrRPyUt tqYTcyGXFu0+/Y/QLHNn32G1K3hTmK0NFsCwGbq8PwACa4yd0uHmJPijuhbnF8M0 cTLYIFRqocc9j/3wBgWE2lwL/tixfm+FZW4hanuHT5nNtDO5Oa7bjjbwjj6O1Hoz bJFaVbAoxSneHqRDJ+3UApSYhMmZgm8+fjHDc5IcI+HomQjYvjsNKBOY4Ph8rXII BBB9icCz3ds/zZOzGbMbVOkUuL1cokInKvv+E2/XCcSIuSAd5cqLPSXlj0gMMiFR 8KSO4/6XEBUhG72aQOeey8YgcWFSZrcJOTpj9n+qWmzqh7s/F7iD/2Y/YQlr5muN Odx2mpE= =SONf -----END PGP SIGNATURE----- Sat Sep 25 08:31:49 UTC 2021 I: Checking whether the package is not for us Sat Sep 25 08:31:49 UTC 2021 I: Starting 1st build on remote node jtx1b-armhf-rb.debian.net. Sat Sep 25 08:31:49 UTC 2021 I: Preparing to do remote build '1' on jtx1b-armhf-rb.debian.net. Sat Sep 25 08:37:49 UTC 2021 I: Deleting $TMPDIR on jtx1b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 24 20:31:56 -12 2021 I: pbuilder-time-stamp: 1632558716 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bppsuite_2.4.1-3.dsc] I: copying [./bppsuite_2.4.1.orig.tar.gz] I: copying [./bppsuite_2.4.1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.cUgbC6ub/trustedkeys.kbx': General error gpgv: Signature made Tue Sep 15 03:04:32 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bppsuite_2.4.1-3.dsc dpkg-source: info: extracting bppsuite in bppsuite-2.4.1 dpkg-source: info: unpacking bppsuite_2.4.1.orig.tar.gz dpkg-source: info: unpacking bppsuite_2.4.1-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23687/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='1135d3b2eca14f20a7151699224dd3ec' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23687' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/pbuilderrc_Pp0F --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/b1 --logfile b1/build.log bppsuite_2.4.1-3.dsc' SUDO_GID='114' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux jtx1b 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 2021 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 20 21:26 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/23687/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev (>= 2.4.0), libbpp-popgen-dev (>= 2.4.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev (>= 2.4.0); however: Package libbpp-phyl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-popgen-dev (>= 2.4.0); however: Package libbpp-popgen-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbpp-core-dev{a} libbpp-core4{a} libbpp-phyl-dev{a} libbpp-phyl12{a} libbpp-popgen-dev{a} libbpp-popgen8{a} libbpp-seq-dev{a} libbpp-seq12{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl lynx psmisc publicsuffix wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After unpacking 163 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf tex-common all 6.16 [53.7 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2 [1725 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+b1 [304 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2 [3534 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libbpp-core4 armhf 2.4.1-5 [494 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libbpp-core-dev armhf 2.4.1-5 [940 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libbpp-seq12 armhf 2.4.1-5 [433 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libbpp-phyl12 armhf 2.4.1-4 [1368 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libbpp-seq-dev armhf 2.4.1-5 [756 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libbpp-phyl-dev armhf 2.4.1-4 [3101 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libbpp-popgen8 armhf 2.4.1-4 [193 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libbpp-popgen-dev armhf 2.4.1-4 [282 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libtext-unidecode-perl all 1.30-1 [103 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libxml-libxml-perl armhf 2.0134+dfsg-2+b1 [321 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf texinfo armhf 6.7.0.dfsg.2-6 [1747 kB] Fetched 35.5 MB in 4s (9020 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_armhf.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_armhf.deb ... 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Setting up libmagic1:armhf (1:5.39-3) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:armhf (1.40.0-2) ... Setting up libbpp-core4:armhf (2.4.1-5) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.2+20201114-2) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:armhf (1.9.4-4) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:armhf (1.4.1-2) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libbpp-seq12:armhf (2.4.1-5) ... Setting up libelf1:armhf (0.183-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libprocps8:armhf (2:3.3.17-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libbpp-phyl12:armhf (2.4.1-4) ... Setting up gettext (0.21-4) ... Setting up libbpp-popgen8:armhf (2.4.1-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:armhf (3.4.3-2+b1) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbpp-core-dev (2.4.1-5) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:armhf (7.74.0-1.3+b1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libbpp-popgen-dev (2.4.1-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libbpp-phyl-dev:armhf (2.4.1-4) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.18.4-2) ... Setting up debhelper (13.3.4) ... Setting up texinfo (6.7.0.dfsg.2-6) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-3_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pranav Ballaney dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/bppsuite-2.4.1' dh_auto_configure -- -DCMAKE_BUILD_TYPE=RelWithDebInfo cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=RelWithDebInfo .. -- The CXX compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-popgen 8.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-popgen.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/bppsuite-2.4.1' dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/depend.internal". Scanning dependencies of target bppreroot make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' Scanning dependencies of target bppml Scanning dependencies of target bppseqgen make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 2%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppReRoot.cpp [ 7%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o [ 7%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppML.cpp cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/stl_vector.h:653:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 653 | vector(_InputIterator __first, _InputIterator __last, | ^~~~~~ /usr/include/c++/10/bits/stl_vector.h:653:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /build/bppsuite-2.4.1/bppSuite/bppReRoot.cpp:48: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /build/bppsuite-2.4.1/bppSuite/bppReRoot.cpp:48: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In function 'void readTreesMs(std::ifstream&, std::vector&, std::vector >&, unsigned int)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In function 'void readTreesCoaSim(std::ifstream&, std::vector&, std::vector >&)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 10%] Linking CXX executable bppreroot cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 10%] Built target bppreroot make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/depend.internal". Scanning dependencies of target bppdist make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 13%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppDist.cpp /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp: In function 'int main(int, char**)': /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:550:90: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 550 | tmpRates = vector(rates.begin() + previousPos, rates.begin() + currentPos); | ^ /build/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp:575:96: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 575 | tmpRates = vector(rates.begin() + previousPos + 1, rates.begin() + currentPos); | ^ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /build/bppsuite-2.4.1/bppSuite/bppML.cpp:50: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /build/bppsuite-2.4.1/bppSuite/bppML.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 15%] Linking CXX executable bppseqgen cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 15%] Built target bppseqgen make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/depend.internal". Scanning dependencies of target bpppars make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 18%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPars.cpp [ 21%] Linking CXX executable bppml cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 21%] Built target bppml make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/depend.internal". Scanning dependencies of target bpptreedraw make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 23%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppTreeDraw.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /build/bppsuite-2.4.1/bppSuite/bppDist.cpp:50: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /build/bppsuite-2.4.1/bppSuite/bppDist.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppPars.cpp:51: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppPars.cpp:51: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 26%] Linking CXX executable bppdist cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 26%] Built target bppdist make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/depend.internal". Scanning dependencies of target bppseqman make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 28%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp [ 31%] Linking CXX executable bpppars cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 31%] Built target bpppars make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/depend.internal". Scanning dependencies of target bppalnscore make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 34%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp [ 36%] Linking CXX executable bpptreedraw cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 36%] Built target bpptreedraw make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/depend.internal". Scanning dependencies of target bppconsense make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 39%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppConsense.cpp [ 42%] Linking CXX executable bppalnscore cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 42%] Built target bppalnscore make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/depend.internal". Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/depend.internal". Scanning dependencies of target bppancestor make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 44%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppAncestor.cpp [ 47%] Linking CXX executable bppseqman cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 47%] Built target bppseqman make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend.internal". 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[with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppConsense.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 52%] Linking CXX executable bppconsense cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 52%] Built target bppconsense make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/depend.internal". 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Scanning dependencies of target bpppopstats make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 55%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/bppsuite-2.4.1/bppSuite/bppPopStats.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp:50: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp:50: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp:50: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp:50: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppAncestor.cpp:50: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppAncestor.cpp:50: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Linking CXX executable bppmixedlikelihoods cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 57%] Built target bppmixedlikelihoods make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bppsuite-2.4.1 /build/bppsuite-2.4.1/doc /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/depend.internal". 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Dependee "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/depend.internal". Scanning dependencies of target man make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 65%] Compressing manpage bppalnscore.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppalnscore.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppalnscore.1.gz [ 68%] Compressing manpage bppancestor.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppancestor.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppancestor.1.gz [ 71%] Compressing manpage bppconsense.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppconsense.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppconsense.1.gz [ 73%] Compressing manpage bppdist.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppdist.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppdist.1.gz [ 76%] Compressing manpage bppmixedlikelihoods.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppmixedlikelihoods.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppmixedlikelihoods.1.gz [ 78%] Compressing manpage bppml.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppml.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppml.1.gz [ 81%] Compressing manpage bpppars.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppars.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpppars.1.gz [ 84%] Compressing manpage bpppopstats.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpppopstats.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpppopstats.1.gz [ 86%] Compressing manpage bppreroot.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppreroot.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppreroot.1.gz [ 89%] Compressing manpage bppseqgen.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppseqgen.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppseqgen.1.gz [ 92%] Compressing manpage bppseqman.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bppseqman.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bppseqman.1.gz [ 94%] Compressing manpage bpptreedraw.1 cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/man/bpptreedraw.1 > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/man/bpptreedraw.1.gz make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 94%] Built target man [ 97%] Compressing info page cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc && /bin/gzip -c -n -9 /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info > /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/doc/bppsuite.info.gz make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [ 97%] Built target info In file included from /usr/include/c++/10/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppPopStats.cpp:52: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /build/bppsuite-2.4.1/bppSuite/bppPopStats.cpp:52: /usr/include/c++/10/bits/stl_vector.h: In member function 'std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [100%] Linking CXX executable bpppopstats cd /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' [100%] Built target bpppopstats make[2]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/bppsuite-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/bppsuite-2.4.1 -B/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppml -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqgen -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppdist -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bpppars -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqman -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppconsense -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppancestor -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppmixedlikelihoods -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppreroot -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bpptreedraw -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bppalnscore -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/bin/bpppopstats -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/info/bppsuite.info.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppalnscore.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppancestor.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppconsense.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppdist.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppmixedlikelihoods.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppml.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppars.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppopstats.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppreroot.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqgen.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqman.1.gz -- Installing: /build/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpptreedraw.1.gz make[1]: Leaving directory '/build/bppsuite-2.4.1/obj-arm-linux-gnueabihf' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/bppsuite-2.4.1' dh_fixperms find debian -name "*.dnd" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/bppsuite-2.4.1' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppancestor contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppalnscore contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppars contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppdist contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppml contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqgen contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqman contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppreroot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppmixedlikelihoods contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpptreedraw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppconsense contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppopstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-3_armhf.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-3_all.deb'. dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-3_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bppsuite_2.4.1-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23687 and its subdirectories I: Current time: Fri Sep 24 20:37:22 -12 2021 I: pbuilder-time-stamp: 1632559042 Sat Sep 25 08:37:51 UTC 2021 I: 1st build successful. Starting 2nd build on remote node cbxi4pro0-armhf-rb.debian.net. Sat Sep 25 08:37:51 UTC 2021 I: Preparing to do remote build '2' on cbxi4pro0-armhf-rb.debian.net. Sat Sep 25 08:59:03 UTC 2021 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. Sat Sep 25 08:59:05 UTC 2021 I: bppsuite_2.4.1-3_armhf.changes: Format: 1.8 Date: Tue, 15 Sep 2020 18:56:51 +0530 Source: bppsuite Binary: bppsuite bppsuite-dbgsym bppsuite-examples Architecture: armhf all Version: 2.4.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pranav Ballaney Description: bppsuite - Bio++ program suite bppsuite-examples - Examples for Bio++ program suite Closes: 963088 Changes: bppsuite (2.4.1-3) unstable; urgency=medium . * Approximate autopkgtest output. Closes: #963088. * Add Pranav Ballaney to Uploaders Checksums-Sha1: 4b9b3bffbcd4ce623b8b47c115553fa1dbdef35d 6142796 bppsuite-dbgsym_2.4.1-3_armhf.deb 5c06eb9f2a84f63a96e9d202cecbb6904a341b23 228016 bppsuite-examples_2.4.1-3_all.deb 94518d38a4cac36d0b9981e7e92bc0246a09f7d2 6294 bppsuite_2.4.1-3_armhf.buildinfo 4297915bc07bb885590a80dff8b2d251662820d8 329860 bppsuite_2.4.1-3_armhf.deb Checksums-Sha256: 7b5b2a63283259daad1ebe44350b1e4d29f64ccfb031cb5179531ccc0b05e1b6 6142796 bppsuite-dbgsym_2.4.1-3_armhf.deb c2dfd426cdf6d53afdd2c62f1dc66ce31e99607a5c292b6220500c05d120b537 228016 bppsuite-examples_2.4.1-3_all.deb 0df175427fd1aee91e64c58f0458430b50973de7482253befe809090e148a514 6294 bppsuite_2.4.1-3_armhf.buildinfo 6c2f2457b015d1a1278a3c3d920e667de26ba354fe7e72b7c4667e3f8dbf3f4d 329860 bppsuite_2.4.1-3_armhf.deb Files: 9f9482c0cac1fd7a8a21bd58d7f908e1 6142796 debug optional bppsuite-dbgsym_2.4.1-3_armhf.deb c31c5da13df181236cf528c7620ea4e1 228016 science optional bppsuite-examples_2.4.1-3_all.deb 362b73e72162c8f8c433f167d3dcd453 6294 science optional bppsuite_2.4.1-3_armhf.buildinfo 51330a1413ad8ad2f3ee437c25288dfb 329860 science optional bppsuite_2.4.1-3_armhf.deb Sat Sep 25 08:59:07 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/bppsuite_2.4.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/bppsuite_2.4.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/bppsuite_2.4.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/b1/bppsuite_2.4.1-3_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.ils7SH1nbR/b2/bppsuite_2.4.1-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.463s) 0.463s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.092s) 0.092s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Sep 25 08:59:08 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Sep 25 08:59:08 UTC 2021 I: bppsuite from bullseye built successfully and reproducibly on armhf. Sat Sep 25 08:59:09 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Sep 25 08:59:09 UTC 2021 I: Submitting 8.0K b1/bppsuite_2.4.1-3_armhf.buildinfo.asc Sat Sep 25 08:59:11 UTC 2021 I: Submitting 8.0K b2/bppsuite_2.4.1-3_armhf.buildinfo.asc Sat Sep 25 08:59:12 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Sep 25 08:59:12 UTC 2021 I: Done submitting .buildinfo files. Sat Sep 25 08:59:12 UTC 2021 I: Removing signed bppsuite_2.4.1-3_armhf.buildinfo.asc files: removed './b1/bppsuite_2.4.1-3_armhf.buildinfo.asc' removed './b2/bppsuite_2.4.1-3_armhf.buildinfo.asc'