Thu Aug 26 11:52:56 UTC 2021 I: starting to build pyranges/bullseye/armhf on jenkins on '2021-08-26 11:52' Thu Aug 26 11:52:56 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_20/2367/console.log Thu Aug 26 11:52:56 UTC 2021 I: Downloading source for bullseye/pyranges=0.0.85+ds-1 --2021-08-26 11:52:56-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pyranges/pyranges_0.0.85%2bds-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2247 (2.2K) Saving to: ‘pyranges_0.0.85+ds-1.dsc’ 0K .. 100% 180M=0s 2021-08-26 11:52:56 (180 MB/s) - ‘pyranges_0.0.85+ds-1.dsc’ saved [2247/2247] Thu Aug 26 11:52:56 UTC 2021 I: pyranges_0.0.85+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pyranges Binary: python3-pyranges Architecture: all Version: 0.0.85+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://github.com/biocore-ntnu/pyranges Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/pyranges Vcs-Git: https://salsa.debian.org/med-team/pyranges.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-ncls , python3-pyrle , python3-pytest , python3-sorted-nearest, python3-hypothesis, bedtools, samtools Package-List: python3-pyranges deb python optional arch=all Checksums-Sha1: 8457c6bea1f05f91496ac3b58775bba3270bd673 3281584 pyranges_0.0.85+ds.orig.tar.xz 1567b0742a40d394325406adf9a3bacf069fd6c8 79860 pyranges_0.0.85+ds-1.debian.tar.xz Checksums-Sha256: 2c3229c4e15063a3092668f5c809c0837d24a93b1b9658168a981dcf1a1e2b39 3281584 pyranges_0.0.85+ds.orig.tar.xz 54e8eb602a11fd73f305c82bc6369b9391cf5c6bb6318852a55ae994f05c99b3 79860 pyranges_0.0.85+ds-1.debian.tar.xz Files: 07bbc9561c853e8316fb7de191455435 3281584 pyranges_0.0.85+ds.orig.tar.xz 53ec08abfb235e56e5dd796af7a409a8 79860 pyranges_0.0.85+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+gGJEOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtG7OQ/9FoaLxK35s12JguXK4ULTW51Xqs4SAfehvIb9 k2h2Lf9Efbm+GKJRoIVPJiOm1r6TZ/TBZOQUWKvB4NKpehLQZnoFXexnPPHRhBFo v67jZme/ZlcV11Qv4Oa+oNUTwPVI5wdd6g08V+E55yx2TAHiPN7TxSocIDs6ozkt 2MU3SMRGDE88ZXxk94PUfRCIHbVW5EzfwBoDViWqH6JUTzsvv///3wE+z97Q9CUS x6Y2NUVDWKfbKlN/5rFwnGQ/ovyyD/9VDwFRbZmTgfPZfUyfKV8T5V7TyuT36hff c8rqwbDO0z/a+puYmMXUiSe2im+Hgr3/Vh9LaWrBQraQI7RbhFqyTsk3IuqEvgGH 8YsYKHzCc69wSYV0PVwKHSBopDCNlYaHkWuRY+NQx00CiUsfKzEukbdNQqNLZAk5 nNlhTRgKXbB6YhGbJBcjVVzEvmi56Bl8af8A/ahoVTOJbcuaAtqAlVffas0s61pE Pr5VMFEB0wHEUiSvK7KOWDDgB/kWi6UuN1Qbq/rAwRaLyHe1fVbfqI0ZyLFNrvI/ KuO74ZWyW2ZmksZW0wNhkyNTPMBS0FjkXrJkcUO6ps0f0gLhWbw/MtnAWKTZNT7B 2CKmaFJyV88KJb2XZWVmW+qIrTbaA0Ok5VEOvQmfZqPeoy7C7Y9v4mbDzhhPPye2 qhLfFtU= =02c5 -----END PGP SIGNATURE----- Thu Aug 26 11:52:56 UTC 2021 I: Checking whether the package is not for us Thu Aug 26 11:52:56 UTC 2021 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Thu Aug 26 11:52:56 UTC 2021 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Fri Aug 27 05:53:18 UTC 2021 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 25 23:53:16 -12 2021 I: pbuilder-time-stamp: 1629978796 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pyranges_0.0.85+ds-1.dsc] I: copying [./pyranges_0.0.85+ds.orig.tar.xz] I: copying [./pyranges_0.0.85+ds-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.yle7ucjw/trustedkeys.kbx': General error gpgv: Signature made Mon Nov 2 02:32:49 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pyranges_0.0.85+ds-1.dsc dpkg-source: info: extracting pyranges in pyranges-0.0.85+ds dpkg-source: info: unpacking pyranges_0.0.85+ds.orig.tar.xz dpkg-source: info: unpacking pyranges_0.0.85+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7071/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8f9b596307054d32b39e2faad5bd233c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7071' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ANYiHovREt/pbuilderrc_JdE9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ANYiHovREt/b1 --logfile b1/build.log pyranges_0.0.85+ds-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux cbxi4a 5.10.0-8-armmp #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 20 21:28 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/7071/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-ncls, python3-pyrle, python3-pytest, python3-sorted-nearest, python3-hypothesis, bedtools, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-ncls; however: Package python3-ncls is not installed. pbuilder-satisfydepends-dummy depends on python3-pyrle; however: Package python3-pyrle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-sorted-nearest; however: Package python3-sorted-nearest is not installed. pbuilder-satisfydepends-dummy depends on python3-hypothesis; however: Package python3-hypothesis is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhts3{a} libicu67{a} liblapack3{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-dateutil{a} python3-distutils{a} python3-hypothesis{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-ncls{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pyrle{a} python3-pytest{a} python3-setuptools{a} python3-six{a} python3-sorted-nearest{a} python3-sortedcontainers{a} python3-tabulate{a} python3-toml{a} python3-tz{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-click python3-dev python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pygments python3-scipy python3-tables python3-xlwt wget 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB of archives. After unpacking 164 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf bedtools armhf 2.30.0+dfsg-1 [573 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf cython3 armhf 0.29.21-3+b1 [1250 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libcurl3-gnutls armhf 7.74.0-1.3+b1 [306 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libhts3 armhf 1.11-4 [332 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B] Get: 65 http://deb.debian.org/debian bullseye/main armhf python3-attr all 20.3.0-1 [52.9 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf python3-six all 1.16.0-2 [17.5 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf python3-dateutil all 2.8.1-6 [79.2 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf python3-sortedcontainers all 2.1.0-2 [31.4 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf python3-hypothesis all 5.43.3-1 [228 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf python3-zipp all 1.0.0-3 [6060 B] Get: 72 http://deb.debian.org/debian bullseye/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf python3-iniconfig all 1.1.1-1 [6308 B] Get: 74 http://deb.debian.org/debian bullseye/main armhf python3-natsort all 7.1.0-1 [37.5 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf python3-ncls armhf 0.0.57+ds-1+b1 [309 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf python3-pyparsing all 2.4.7-1 [109 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf python3-packaging all 20.9-2 [33.5 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf python3-tz all 2021.1-1 [34.8 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [3026 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf python3-pluggy all 0.13.0-6 [22.3 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf python3-py all 1.10.0-1 [94.2 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf python3-tabulate all 0.8.7-0.1 [33.8 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf python3-pyrle armhf 0.0.31-2+b2 [225 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf python3-toml all 0.10.1-1 [15.9 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf python3-pytest all 6.0.2-2 [211 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf python3-sorted-nearest armhf 0.0+git20200319.8204815+ds-2+b2 [401 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf samtools armhf 1.11-1 [519 kB] Fetched 39.7 MB in 18s (2208 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_armhf.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:armhf. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_armhf.deb ... Unpacking libpython3.9-minimal:armhf (3.9.2-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../6-libexpat1_2.2.10-2_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_armhf.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:armhf (3.9.2-1) ... Setting up libexpat1:armhf (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:armhf. Preparing to unpack .../2-libmpdec3_2.5.1-1_armhf.deb ... Unpacking libmpdec3:armhf (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../4-libreadline8_8.1-1_armhf.deb ... Unpacking libreadline8:armhf (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:armhf. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_armhf.deb ... Unpacking libpython3.9-stdlib:armhf (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_armhf.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20686 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../03-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../06-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package bedtools. Preparing to unpack .../12-bedtools_2.30.0+dfsg-1_armhf.deb ... Unpacking bedtools (2.30.0+dfsg-1) ... Selecting previously unselected package cython3. Preparing to unpack .../13-cython3_0.29.21-3+b1_armhf.deb ... Unpacking cython3 (0.29.21-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../14-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../15-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../16-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../17-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../18-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../21-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../23-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../24-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../29-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../30-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../32-libblas3_3.9.0-3_armhf.deb ... Unpacking libblas3:armhf (3.9.0-3) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../33-libbrotli1_1.0.9-2+b2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../34-libsasl2-modules-db_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../35-libsasl2-2_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../36-libldap-2.4-2_2.4.57+dfsg-3_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../37-libnghttp2-14_1.43.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.43.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../38-libpsl5_0.21.0-1.2_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.2) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../40-libssh2-1_1.9.0-2_armhf.deb ... Unpacking libssh2-1:armhf (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../41-libcurl3-gnutls_7.74.0-1.3+b1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.74.0-1.3+b1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../42-libdeflate0_1.7-1_armhf.deb ... Unpacking libdeflate0:armhf (1.7-1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../43-libgfortran5_10.2.1-6_armhf.deb ... Unpacking libgfortran5:armhf (10.2.1-6) ... Selecting previously unselected package libhts3:armhf. Preparing to unpack .../44-libhts3_1.11-4_armhf.deb ... Unpacking libhts3:armhf (1.11-4) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../45-liblapack3_3.9.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.9.0-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../46-libncurses6_6.2+20201114-2_armhf.deb ... Unpacking libncurses6:armhf (6.2+20201114-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../47-python3-all_3.9.2-3_armhf.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3-attr. Preparing to unpack .../48-python3-attr_20.3.0-1_all.deb ... Unpacking python3-attr (20.3.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../49-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../50-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../51-python3-sortedcontainers_2.1.0-2_all.deb ... Unpacking python3-sortedcontainers (2.1.0-2) ... Selecting previously unselected package python3-hypothesis. Preparing to unpack .../52-python3-hypothesis_5.43.3-1_all.deb ... Unpacking python3-hypothesis (5.43.3-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../53-python3-more-itertools_4.2.0-3_all.deb ... Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../54-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../55-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../56-python3-iniconfig_1.1.1-1_all.deb ... Unpacking python3-iniconfig (1.1.1-1) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../57-python3-natsort_7.1.0-1_all.deb ... Unpacking python3-natsort (7.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../58-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../59-python3-numpy_1%3a1.19.5-1_armhf.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-ncls. Preparing to unpack .../60-python3-ncls_0.0.57+ds-1+b1_armhf.deb ... Unpacking python3-ncls (0.0.57+ds-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../61-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... 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Unpacking python3-sorted-nearest (0.0+git20200319.8204815+ds-2+b2) ... Selecting previously unselected package samtools. Preparing to unpack .../74-samtools_1.11-1_armhf.deb ... Unpacking samtools (1.11-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libnghttp2-14:armhf (1.43.0-1) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.2+20201114-2) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up bedtools (2.30.0+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:armhf (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:armhf (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up samtools (1.11-1) ... Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-sortedcontainers (2.1.0-2) ... Setting up python3-tz (2021.1-1) ... Setting up python3-natsort (7.1.0-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-hypothesis (5.43.3-1) ... Setting up python3-tabulate (0.8.7-0.1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-ncls (0.0.57+ds-1+b1) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pandas-lib:armhf (1.1.5+dfsg-2) ... Setting up python3-sorted-nearest (0.0+git20200319.8204815+ds-2+b2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pyrle (0.0.31-2+b2) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pyranges-0.0.85+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyranges_0.0.85+ds-1_source.changes dpkg-buildpackage: info: source package pyranges dpkg-buildpackage: info: source version 0.0.85+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from pyranges-0.0.85+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/pyranges-0.0.85+ds' dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_stranded.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_guessers.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/statistics.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_getset_attr.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_do_not_error.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_io.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/__init__.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/hypothesis_helper.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_pickle.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_change_chromosome_custom.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_binary.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/helpers.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/k_nearest.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/conftest.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_genomicfeatures.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests copying tests/test_unary.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests creating /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/tostring2.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/tostring.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/multioverlap.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/statistics.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/get_fasta.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/__init__.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/stats.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/out.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/data.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/multithreaded.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/subset.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/pyranges.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/version.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/helpers.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/genomicfeatures.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges copying pyranges/readers.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges creating /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/windows copying tests/windows/__init__.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/windows copying tests/windows/test_windows.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/windows creating /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/intersection.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/drop.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/to_rle.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/statistics.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/drop_duplicates.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/cluster.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/init.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/join.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/itergrs.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/split.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/__init__.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/merge.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/sort.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/k_nearest_old.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/windows.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/new_position.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/summary.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/getitem.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/nearest.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/coverage.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/insert.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/concat.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/k_nearest.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/attr.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/call.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods copying pyranges/methods/subtraction.py -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/methods creating /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/chipseq_background.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/cpg.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/aorta.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/chromsizes.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/exons.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/lamina.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/chipseq.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/f2.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/aorta2.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/f1.bed -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/ensembl.gtf -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/ensembl_human.gtf.gz -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/gencode_human.gtf.gz -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/ucsc_human.bed.gz -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data copying pyranges/example_data/bw.bw -> /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data echo 'Generating corresponding files ...' Generating corresponding files ... cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai make[1]: Leaving directory '/build/pyranges-0.0.85+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:284: cp -av /build/pyranges-0.0.85+ds/tests/*.bed /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests && cp -av /build/pyranges-0.0.85+ds/tests/test_data /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests && cp -av /build/pyranges-0.0.85+ds/tests/data /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests && cp -av /build/pyranges-0.0.85+ds/pyranges/example_data /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges '/build/pyranges-0.0.85+ds/tests/chip_10.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/chip_10.bed' '/build/pyranges-0.0.85+ds/tests/f1.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/f1.bed' '/build/pyranges-0.0.85+ds/tests/f2.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/f2.bed' '/build/pyranges-0.0.85+ds/tests/test_data' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/test_data' '/build/pyranges-0.0.85+ds/tests/test_data/ensembl.gtf' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/test_data/ensembl.gtf' '/build/pyranges-0.0.85+ds/tests/test_data/gencode.gff3' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/test_data/gencode.gff3' '/build/pyranges-0.0.85+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/pyranges-0.0.85+ds/tests/test_data/test_sorted.bam' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/test_data/test_sorted.bam' '/build/pyranges-0.0.85+ds/tests/test_data/test_sorted.bam.bai' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/pyranges-0.0.85+ds/tests/data' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/data' '/build/pyranges-0.0.85+ds/tests/data/test_data.py' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/tests/data/test_data.py' '/build/pyranges-0.0.85+ds/pyranges/example_data/aorta.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/aorta.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/aorta2.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/aorta2.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/bw.bw' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/bw.bw' '/build/pyranges-0.0.85+ds/pyranges/example_data/chipseq.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/chipseq.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/chipseq_background.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/chromsizes.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/cpg.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/cpg.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/ensembl.gtf' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/pyranges-0.0.85+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/pyranges-0.0.85+ds/pyranges/example_data/exons.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/exons.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/f1.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/f1.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/f2.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/f2.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/pyranges-0.0.85+ds/pyranges/example_data/lamina.bed' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/lamina.bed' '/build/pyranges-0.0.85+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/pyranges-0.0.85+ds/pyranges/example_data/control.bam' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/control.bam' '/build/pyranges-0.0.85+ds/pyranges/example_data/control.bam.bai' -> '/build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build/pyranges/example_data/control.bam.bai' I: pybuild base:232: cd /build/pyranges-0.0.85+ds/.pybuild/cpython3_3.9_pyranges/build; python3.9 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/pyranges-0.0.85+ds plugins: hypothesis-5.43.3 collected 526 items tests/test_binary.py FFFF......FFFFFFFFFFFFFFFFFFFFFFFFFF....FFFFFFFFFFF [ 9%] FFFFFFF [ 11%] tests/test_change_chromosome_custom.py . [ 11%] tests/test_do_not_error.py FFFFFFFFFFFFFFFF.F.F.FFFFFFFFF.F.F.FFFFFFFFF. [ 19%] ..F.FFFFFFFFFFFFFFFF.F.F.FFFFFFFFF...F.FFFFFFFFF...F.FFFFFFFFFFFFFFFF... [ 33%] F.FFFFFFFFF...F.FFFFFFFFF...F.FFFFFFFFFFFFFFFF.F.F.FFFFFFFFF...F.FFFFFFF [ 47%] FF...F.FFFFFFFFFFFFFFFF...F.FFFFFFFFF.F.F.FFFFFFFFF...F.FFFFFFFFFFFFFFFF [ 60%] ...F.FFFFFFFFF...F.FFFFFFFFF...F.FFFFFFFFFFFFFFFF...F.FFFFFFFFF.F.F.FFFF [ 74%] FFFFF.F.F.FFFFFFFFFFFFFFFF...F.FFFFFFFFF.F.F.FFFFFFFFF.Fri Aug 27 05:53:13 UTC 2021 - pbuilder was killed by timeout after 18h.