Wed Aug 18 05:29:04 UTC 2021 I: starting to build python-nanoget/bullseye/armhf on jenkins on '2021-08-18 05:28' Wed Aug 18 05:29:04 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_8/10990/console.log Wed Aug 18 05:29:04 UTC 2021 I: Downloading source for bullseye/python-nanoget=1.12.2-4 --2021-08-18 05:29:05-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-nanoget/python-nanoget_1.12.2-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2217 (2.2K) Saving to: ‘python-nanoget_1.12.2-4.dsc’ 0K .. 100% 35.0M=0s 2021-08-18 05:29:05 (35.0 MB/s) - ‘python-nanoget_1.12.2-4.dsc’ saved [2217/2217] Wed Aug 18 05:29:05 UTC 2021 I: python-nanoget_1.12.2-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-nanoget Binary: python3-nanoget, python3-nanoget-examples Architecture: all Version: 1.12.2-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/wdecoster/nanoget Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-nanoget Vcs-Git: https://salsa.debian.org/med-team/python-nanoget.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-biopython, python3-nanomath, python3-pysam Package-List: python3-nanoget deb python optional arch=all python3-nanoget-examples deb python optional arch=all Checksums-Sha1: 096e245daf986c809a3a9d0857cd9411ff16b5c5 21149 python-nanoget_1.12.2.orig.tar.gz 8e55fd68f4eef25c69ba86e4ea11ea1ffc21eb1d 26143548 python-nanoget_1.12.2-4.debian.tar.xz Checksums-Sha256: 8bd528e793bb8689c1494b735f2ec80a7f5a60b0480c76d04b41696763466159 21149 python-nanoget_1.12.2.orig.tar.gz 98ee1e134531855e34383e700f5463c0f4ec2daeaea843b43d42d7fb1b3688d2 26143548 python-nanoget_1.12.2-4.debian.tar.xz Files: a0ba3326605212744db7fb2109dc79a2 21149 python-nanoget_1.12.2.orig.tar.gz 174debc6a5ca59cb0f8025aa42b59062 26143548 python-nanoget_1.12.2-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+hpeARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEYUw/+MeicE8Iy86E7eqXdV003Lq8j10my0UVP 0A2z42Ptpv+3DU0Gfc93aJEXvLUQ/mbRv3kvKdXQrY14KfKTZzUfK0P/GVtMw5fn BN/NfyLTl4ZN4lRkySgjhxXbf1g+rXLl43bb8IVM3Fi7sIctvjAQAT26qSKhlMQD Ly9hrFTe1N5lruCFJKKcMP//mld84MybPkPBVaHTFtHiU76D5CgMh5U9MUmbbfdE DEvaMFR2HTmqpbZMNhTwoNQCXkFX0+IYVbF9A35jgA9KcDelmlF/953hoIPhzRTg kLzsuOWASIBLFhmixBUilCdBJ13FghzN+h5pfyEpmpszKcIrb2s3j5VppeBd6TAi W3KUVMiIwlRW3nGzTxM/nEYa0Sqd0GkT2DtlhEc4deH23Xxjc9ZfU0q9sut6F9RP /IN246d6cNVuN1LyIlYxzJtNyz7fLrYYV3DUYO7+inMHhnVRTR/wLlhbXSqY8qX0 d18rCu+HkLfVLOl7q7syHEvkT09ibSilR6R37gzw+FRGPN3NYgEdplgGk8ubcEeI ecA3kxXDMKCdiw2G9JZRe/FPtRs+Z5nD0MdUvpRkHjQen9xU2yJbqxf4a6HrJqRr C60AX2QLpOr/eZVGcjbNC32IqAfsUrTQ8MUSdDTVF+0u3tClTS5c0f3XnqOpT1xh 1SzQhmS/Z08= =lLWx -----END PGP SIGNATURE----- Wed Aug 18 05:29:05 UTC 2021 I: Checking whether the package is not for us Wed Aug 18 05:29:05 UTC 2021 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Wed Aug 18 05:29:05 UTC 2021 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Wed Aug 18 05:34:20 UTC 2021 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 17 17:29:22 -12 2021 I: pbuilder-time-stamp: 1629264562 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-nanoget_1.12.2-4.dsc] I: copying [./python-nanoget_1.12.2.orig.tar.gz] I: copying [./python-nanoget_1.12.2-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.UsOhKlrr/trustedkeys.kbx': General error gpgv: Signature made Tue Nov 3 06:48:00 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-nanoget_1.12.2-4.dsc dpkg-source: info: extracting python-nanoget in python-nanoget-1.12.2 dpkg-source: info: unpacking python-nanoget_1.12.2.orig.tar.gz dpkg-source: info: unpacking python-nanoget_1.12.2-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9456/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='d48c0a4c25614239824f6b4e15e0bee1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9456' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7n7ZIlfpEb/pbuilderrc_rKMF --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7n7ZIlfpEb/b1 --logfile b1/build.log python-nanoget_1.12.2-4.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux virt64a 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 14 21:27 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/9456/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-biopython, python3-nanomath, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-nanomath; however: Package python3-nanomath is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libhts3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnghttp2-14{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-biopython{a} python3-dateutil{a} python3-deprecated{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-nanomath{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pysam{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3-wrapt{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-renderpm python3-scipy python3-tables python3-xlwt wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 155 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libcurl3-gnutls armhf 7.74.0-1.3+b1 [306 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libhts3 armhf 1.11-4 [332 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1 [271 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.7 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.2 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf python3-reportlab-accel armhf 3.5.59-2 [37.4 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [413 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf python3-reportlab all 3.5.59-2 [575 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf python3-biopython armhf 1.78+dfsg-4 [1383 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf python3-six all 1.16.0-2 [17.5 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf python3-dateutil all 2.8.1-6 [79.2 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf python3-wrapt armhf 1.12.1-4+b1 [36.9 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf python3-deprecated all 1.2.11-1 [12.9 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf python3-tz all 2021.1-1 [34.8 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [3026 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf python3-nanomath all 1.2.0+ds-1 [8016 B] Get: 92 http://deb.debian.org/debian bullseye/main armhf python3-pysam armhf 0.15.4+ds-3+b2 [1381 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Fetched 41.2 MB in 3s (11.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_armhf.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. 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Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20710 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../03-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../06-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. 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Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../21-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... 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Preparing to unpack .../32-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../33-libbsd0_0.11.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../34-libsasl2-modules-db_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../35-libsasl2-2_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../36-libldap-2.4-2_2.4.57+dfsg-3_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../37-libnghttp2-14_1.43.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.43.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../38-libpsl5_0.21.0-1.2_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.2) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../40-libssh2-1_1.9.0-2_armhf.deb ... Unpacking libssh2-1:armhf (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../41-libcurl3-gnutls_7.74.0-1.3+b1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.74.0-1.3+b1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../42-libdeflate0_1.7-1_armhf.deb ... Unpacking libdeflate0:armhf (1.7-1) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../43-libpng16-16_1.6.37-3_armhf.deb ... Unpacking libpng16-16:armhf (1.6.37-3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../44-libfreetype6_2.10.4+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.10.4+dfsg-1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../45-libgfortran5_10.2.1-6_armhf.deb ... Unpacking libgfortran5:armhf (10.2.1-6) ... Selecting previously unselected package libhts3:armhf. Preparing to unpack .../46-libhts3_1.11-4_armhf.deb ... Unpacking libhts3:armhf (1.11-4) ... Selecting previously unselected package libimagequant0:armhf. Preparing to unpack .../47-libimagequant0_2.12.2-1.1_armhf.deb ... Unpacking libimagequant0:armhf (2.12.2-1.1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../48-libjbig0_2.1-3.1+b2_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../49-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../50-liblapack3_3.9.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.9.0-3) ... Selecting previously unselected package liblcms2-2:armhf. Preparing to unpack .../51-liblcms2-2_2.12~rc1-2_armhf.deb ... Unpacking liblcms2-2:armhf (2.12~rc1-2) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../52-libwebp6_0.6.1-2.1_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2.1) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../53-libtiff5_4.2.0-1_armhf.deb ... Unpacking libtiff5:armhf (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:armhf. Preparing to unpack .../54-libwebpdemux2_0.6.1-2.1_armhf.deb ... Unpacking libwebpdemux2:armhf (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:armhf. Preparing to unpack .../55-libwebpmux3_0.6.1-2.1_armhf.deb ... Unpacking libwebpmux3:armhf (0.6.1-2.1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../56-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../57-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../58-libxcb1_1.14-3_armhf.deb ... Unpacking libxcb1:armhf (1.14-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../59-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../60-python3-numpy_1%3a1.19.5-1_armhf.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-reportlab-accel:armhf. Preparing to unpack .../61-python3-reportlab-accel_3.5.59-2_armhf.deb ... Unpacking python3-reportlab-accel:armhf (3.5.59-2) ... Selecting previously unselected package python3-pil:armhf. Preparing to unpack .../62-python3-pil_8.1.2+dfsg-0.3_armhf.deb ... Unpacking python3-pil:armhf (8.1.2+dfsg-0.3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../63-python3-reportlab_3.5.59-2_all.deb ... Unpacking python3-reportlab (3.5.59-2) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../64-python3-biopython_1.78+dfsg-4_armhf.deb ... Unpacking python3-biopython (1.78+dfsg-4) ... Selecting previously unselected package python3-six. Preparing to unpack .../65-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../66-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../67-python3-wrapt_1.12.1-4+b1_armhf.deb ... Unpacking python3-wrapt (1.12.1-4+b1) ... Selecting previously unselected package python3-deprecated. Preparing to unpack .../68-python3-deprecated_1.2.11-1_all.deb ... Unpacking python3-deprecated (1.2.11-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../69-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-pandas-lib:armhf. Preparing to unpack .../70-python3-pandas-lib_1.1.5+dfsg-2_armhf.deb ... Unpacking python3-pandas-lib:armhf (1.1.5+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../71-python3-pandas_1.1.5+dfsg-2_all.deb ... Unpacking python3-pandas (1.1.5+dfsg-2) ... Selecting previously unselected package python3-nanomath. Preparing to unpack .../72-python3-nanomath_1.2.0+ds-1_all.deb ... Unpacking python3-nanomath (1.2.0+ds-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../73-python3-pysam_0.15.4+ds-3+b2_armhf.deb ... Unpacking python3-pysam (0.15.4+ds-3+b2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../74-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up liblcms2-2:armhf (2.12~rc1-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libnghttp2-14:armhf (1.43.0-1) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libimagequant0:armhf (2.12.2-1.1) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:armhf (0.6.1-2.1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up libtiff5:armhf (4.2.0-1) ... Setting up libwebpmux3:armhf (0.6.1-2.1) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:armhf (0.6.1-2.1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:armhf (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:armhf (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:armhf (8.1.2+dfsg-0.3) ... Setting up python3-reportlab-accel:armhf (3.5.59-2) ... Setting up python3-wrapt (1.12.1-4+b1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-deprecated (1.2.11-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-pandas-lib:armhf (1.1.5+dfsg-2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-nanomath (1.2.0+ds-1) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-nanoget-1.12.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-nanoget_1.12.2-4_source.changes dpkg-buildpackage: info: source package python-nanoget dpkg-buildpackage: info: source version 1.12.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget copying nanoget/utils.py -> /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget copying nanoget/version.py -> /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget copying nanoget/extraction_functions.py -> /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget copying nanoget/__init__.py -> /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget copying nanoget/nanoget.py -> /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget package init file 'scripts/__init__.py' not found (or not a regular file) creating /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/scripts copying scripts/test.py -> /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/scripts dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-nanoget-1.12.2/debian/python3-nanoget running install running build running build_py package init file 'scripts/__init__.py' not found (or not a regular file) running install_lib creating /build/python-nanoget-1.12.2/debian/python3-nanoget creating /build/python-nanoget-1.12.2/debian/python3-nanoget/usr creating /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib creating /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9 creating /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages creating /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/scripts copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/scripts/test.py -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/scripts creating /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/utils.py -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/version.py -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/extraction_functions.py -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/__init__.py -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/nanoget.py -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget creating /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/__pycache__ copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/__pycache__/extraction_functions.cpython-39.pyc -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/__pycache__ copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/__pycache__/__init__.cpython-39.pyc -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/__pycache__ copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/__pycache__/version.cpython-39.pyc -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/__pycache__ copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/__pycache__/nanoget.cpython-39.pyc -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/__pycache__ copying /build/python-nanoget-1.12.2/.pybuild/cpython3_3.9_nanoget/build/nanoget/__pycache__/utils.cpython-39.pyc -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/__pycache__ byte-compiling /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/scripts/test.py to test.cpython-39.pyc byte-compiling /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/utils.py to utils.cpython-39.pyc byte-compiling /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/version.py to version.cpython-39.pyc byte-compiling /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/extraction_functions.py to extraction_functions.cpython-39.pyc byte-compiling /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget/nanoget.py to nanoget.cpython-39.pyc running install_data copying LICENSE -> /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/ running install_egg_info running egg_info creating nanoget.egg-info writing nanoget.egg-info/PKG-INFO writing dependency_links to nanoget.egg-info/dependency_links.txt writing requirements to nanoget.egg-info/requires.txt writing top-level names to nanoget.egg-info/top_level.txt writing manifest file 'nanoget.egg-info/SOURCES.txt' reading manifest file 'nanoget.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'nanoget.egg-info/SOURCES.txt' Copying nanoget.egg-info to /build/python-nanoget-1.12.2/debian/python3-nanoget/usr/lib/python3.9/dist-packages/nanoget-1.12.2.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/python-nanoget-1.12.2' dh_installexamples mv `find debian/python3-nanoget -name test.py` debian/python3-nanoget-examples/usr/share/doc/python3-nanoget/examples find debian -name __pycache__ -type d | xargs rm -rf find debian -name scripts -type d | xargs rm -rf find debian -name LICENSE -type f -delete make[1]: Leaving directory '/build/python-nanoget-1.12.2' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-nanoget' in '../python3-nanoget_1.12.2-4_all.deb'. dpkg-deb: building package 'python3-nanoget-examples' in '../python3-nanoget-examples_1.12.2-4_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-nanoget_1.12.2-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9456 and its subdirectories I: Current time: Tue Aug 17 17:31:57 -12 2021 I: pbuilder-time-stamp: 1629264717 Wed Aug 18 05:34:23 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ff4a-armhf-rb.debian.net. Wed Aug 18 05:34:23 UTC 2021 I: Preparing to do remote build '2' on ff4a-armhf-rb.debian.net. Wed Aug 18 05:42:00 UTC 2021 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net. Wed Aug 18 05:42:03 UTC 2021 I: python-nanoget_1.12.2-4_armhf.changes: Format: 1.8 Date: Tue, 03 Nov 2020 19:37:33 +0100 Source: python-nanoget Binary: python3-nanoget python3-nanoget-examples Architecture: all Version: 1.12.2-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-nanoget - extract information from Oxford Nanopore sequencing data and alig python3-nanoget-examples - example data for python3-nanoget (dealing with Oxford Nanopore da Closes: 973625 Changes: python-nanoget (1.12.2-4) unstable; urgency=medium . * Move test scripts to examples Closes: #973625 Checksums-Sha1: 5d37067606c2c03d1d20a1bf3ca623576c0e4b49 6907 python-nanoget_1.12.2-4_armhf.buildinfo 1dad58aa522fabb1e21ec729a43c37c838519f88 26160820 python3-nanoget-examples_1.12.2-4_all.deb 7e9ce299933d8bce21ea5ca37c02a89e375eae2a 10668 python3-nanoget_1.12.2-4_all.deb Checksums-Sha256: a3e312fcf5a558fd1581d99a759f065be3547ec488630f474367bd5c5c5f734a 6907 python-nanoget_1.12.2-4_armhf.buildinfo 0c6ced0a2947e5828915c9d3c2f8e45f1e1ec4c47483976d7647f09ca4b384c4 26160820 python3-nanoget-examples_1.12.2-4_all.deb a92ca5d89ed353f44f744fbccd05da32454613d54777ad2f835f99c24a239e55 10668 python3-nanoget_1.12.2-4_all.deb Files: 3516b56be61486e489cd2afb6af995b6 6907 science optional python-nanoget_1.12.2-4_armhf.buildinfo fa4cc3ea63900819acf691f47716f424 26160820 python optional python3-nanoget-examples_1.12.2-4_all.deb 7f25be36318f3383bb6510491ee3852c 10668 python optional python3-nanoget_1.12.2-4_all.deb Wed Aug 18 05:42:04 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.7n7ZIlfpEb/python-nanoget_1.12.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.7n7ZIlfpEb/python-nanoget_1.12.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.7n7ZIlfpEb/python-nanoget_1.12.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.7n7ZIlfpEb/b1/python-nanoget_1.12.2-4_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.7n7ZIlfpEb/b2/python-nanoget_1.12.2-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.619s) 0.619s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.363s) 0.362s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Aug 18 05:42:05 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Aug 18 05:42:05 UTC 2021 I: python-nanoget from bullseye built successfully and reproducibly on armhf. Wed Aug 18 05:42:06 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Aug 18 05:42:06 UTC 2021 I: Submitting 8.0K b1/python-nanoget_1.12.2-4_armhf.buildinfo.asc Wed Aug 18 05:42:08 UTC 2021 I: Submitting 8.0K b2/python-nanoget_1.12.2-4_armhf.buildinfo.asc Wed Aug 18 05:42:08 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Aug 18 05:42:08 UTC 2021 I: Done submitting .buildinfo files. Wed Aug 18 05:42:08 UTC 2021 I: Removing signed python-nanoget_1.12.2-4_armhf.buildinfo.asc files: removed './b1/python-nanoget_1.12.2-4_armhf.buildinfo.asc' removed './b2/python-nanoget_1.12.2-4_armhf.buildinfo.asc'