Wed Jul 28 05:42:11 UTC 2021 I: starting to build python-pauvre/bullseye/armhf on jenkins on '2021-07-28 05:41' Wed Jul 28 05:42:11 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_35/4682/console.log Wed Jul 28 05:42:11 UTC 2021 I: Downloading source for bullseye/python-pauvre=0.2.2-2 --2021-07-28 05:42:11-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pauvre/python-pauvre_0.2.2-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2344 (2.3K) Saving to: ‘python-pauvre_0.2.2-2.dsc’ 0K .. 100% 180M=0s 2021-07-28 05:42:11 (180 MB/s) - ‘python-pauvre_0.2.2-2.dsc’ saved [2344/2344] Wed Jul 28 05:42:11 UTC 2021 I: python-pauvre_0.2.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-pauvre Binary: python3-pauvre Architecture: all Version: 0.2.2-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/conchoecia/pauvre Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pauvre Vcs-Git: https://salsa.debian.org/med-team/python-pauvre.git Testsuite: autopkgtest Testsuite-Triggers: python3-nanoget-examples Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib , python3-biopython , python3-pandas , python3-numpy , python3-scipy , python3-sklearn , python3-tk , python3-progressbar Package-List: python3-pauvre deb python optional arch=all Checksums-Sha1: 85ce3f977e600081c5897668d9d354a52b08766b 61885 python-pauvre_0.2.2.orig.tar.gz 45f6c6299e5849ec70b00c72c535f77309e8a295 6684 python-pauvre_0.2.2-2.debian.tar.xz Checksums-Sha256: 54cd738da0aed36118a05bd747913cfff8572ec78ff99babab818c96573cfa40 61885 python-pauvre_0.2.2.orig.tar.gz 2a8a1a92e0b242e0a3c41af3c294705beb6ec01ae8ed8ee5a8ca00faef8bf455 6684 python-pauvre_0.2.2-2.debian.tar.xz Files: d36b904bbd1f51d07cf7a5cdda290e0e 61885 python-pauvre_0.2.2.orig.tar.gz 788c6b3dc34de1ad31db4a018a8f0b77 6684 python-pauvre_0.2.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl8GDF0ACgkQL9i+2sAg 7tHv5g/+J3FL2ZRYFIVWLj+92t2CQr7is8q9P5ZM25xXWKLDl78IFXU7zJkBpDUA UZnDUYT2DlaRpl8/m5/AIle4h5/DyzPxl5OaYja5bH6PpGDkMJYJQzNmwuTXRJkG k166yvUpbzVAQgeoiqdHX5Rhp0E0ITJa0kVyZtNOGCiGHApEYtJzujMVQuJIViQX VlKi8511qJUMSAjv0fCLdRfOrCo+PAFjnogDoFWjDVmH2jQdjnhiKlXeZgSE08OG He+0Vdnc3uiJhD1/cddMvPb6ValmKPUqYz7Be6ZTbhzll/r/AxPC4680WMydG+ID 85JvEETxFZU6HYG/kb7z+L23SIGbsmQbz7LnF5DWOur/H4GC0q7zVJ2Fc4M2qAFF zTr+Z8XpGOv62YIMlMlV/+wbgV85RuqMs8m4BRO7oZwGZpbqdXRBxxGksWG5Ji4U iKyB6mtp0uapNHN4K76buIyWUwU7nFczNF7kLclzezCh3IAJ5Fj/rRGghk3BQXMg M9bCwkoHqczUlVtZJzZE0M26ZOuv6KV0uppoPWPZJ7bghOo79rJ7XA34S1jSfVbJ SXWjQxHM9HubpnwoGLZD68+VDRQbJOj0esCIiwT6LFptEs5bQJTnwpDk6ynRODcW P2YpTdu183nogE+gRhvQaN2Zg/UKbR5nVmxoOzdxMLqARYZtdC8= =ohWI -----END PGP SIGNATURE----- Wed Jul 28 05:42:11 UTC 2021 I: Checking whether the package is not for us Wed Jul 28 05:42:11 UTC 2021 I: Starting 1st build on remote node jtx1c-armhf-rb.debian.net. Wed Jul 28 05:42:11 UTC 2021 I: Preparing to do remote build '1' on jtx1c-armhf-rb.debian.net. Wed Jul 28 05:47:28 UTC 2021 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 27 17:42:20 -12 2021 I: pbuilder-time-stamp: 1627450940 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pauvre_0.2.2-2.dsc] I: copying [./python-pauvre_0.2.2.orig.tar.gz] I: copying [./python-pauvre_0.2.2-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.pWBXGylq/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 8 06:11:41 2020 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pauvre_0.2.2-2.dsc dpkg-source: info: extracting python-pauvre in python-pauvre-0.2.2 dpkg-source: info: unpacking python-pauvre_0.2.2.orig.tar.gz dpkg-source: info: unpacking python-pauvre_0.2.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying lsi-test-args.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32028/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='d8d637292f0144c5b1b585a846f47db5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32028' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TyiGow80qm/pbuilderrc_We1f --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TyiGow80qm/b1 --logfile b1/build.log python-pauvre_0.2.2-2.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux jtx1c 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 25 21:25 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/32028/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib, python3-biopython, python3-pandas, python3-numpy, python3-scipy, python3-sklearn, python3-tk, python3-progressbar dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-progressbar; however: Package python3-progressbar is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libncurses6{a} libpipeline1{a} libpng16-16{a} libprocps8{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtcl8.6{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-biopython{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-joblib{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-progressbar{a} python3-pyparsing{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-tk{a} python3-tz{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} ttf-bitstream-vera{a} ucf{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-nose python3-numexpr python3-odf python3-olefile python3-openpyxl python3-psutil python3-pytest python3-renderpm python3-simplejson python3-tables python3-xlwt wget 0 packages upgraded, 115 newly installed, 0 to remove and 0 not upgraded. Need to get 67.8 MB of archives. After unpacking 246 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [913 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.1-1 [310 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.1-1 [712 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libxft2 armhf 2.3.2-2 [50.1 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libtk8.6 armhf 8.6.11-2 [693 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [489 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf fonts-lyx all 2.3.6-1 [205 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.9 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1 [271 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.7 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.2 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf python3-reportlab-accel armhf 3.5.59-2 [37.4 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [413 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf python3-reportlab all 3.5.59-2 [575 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf python3-biopython armhf 1.78+dfsg-4 [1383 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf python3-six all 1.16.0-1 [17.1 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf python3-cycler all 0.10.0-3 [8084 B] Get: 100 http://deb.debian.org/debian bullseye/main armhf python3-dateutil all 2.8.1-6 [79.2 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf python3-decorator all 4.4.2-2 [15.8 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf python3-joblib all 0.17.0-4 [213 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf python3-kiwisolver armhf 1.3.1-1+b1 [46.7 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf python3-pyparsing all 2.4.7-1 [109 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf python3-matplotlib armhf 3.3.4-1 [4111 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf python3-tz all 2021.1-1 [34.8 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [3026 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf python3-progressbar all 2.5-2 [11.5 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf python3-scipy armhf 1.6.0-2 [11.3 MB] Get: 111 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf python3-sklearn-lib armhf 0.23.2-5 [1637 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf python3-threadpoolctl all 2.1.0-1 [15.3 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf python3-sklearn all 0.23.2-5 [1818 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf python3-tk armhf 3.9.2-1 [97.7 kB] Fetched 67.8 MB in 13s (5174 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:armhf. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_armhf.deb ... Unpacking libpython3.9-minimal:armhf (3.9.2-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../6-libexpat1_2.2.10-2_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_armhf.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:armhf (3.9.2-1) ... Setting up libexpat1:armhf (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:armhf. Preparing to unpack .../4-libmpdec3_2.5.1-1_armhf.deb ... Unpacking libmpdec3:armhf (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../6-libreadline8_8.1-1_armhf.deb ... Unpacking libreadline8:armhf (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:armhf. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_armhf.deb ... Unpacking libpython3.9-stdlib:armhf (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_armhf.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20710 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../01-libncurses6_6.2+20201114-2_armhf.deb ... Unpacking libncurses6:armhf (6.2+20201114-2) ... Selecting previously unselected package libprocps8:armhf. Preparing to unpack .../02-libprocps8_2%3a3.3.17-5_armhf.deb ... Unpacking libprocps8:armhf (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../03-procps_2%3a3.3.17-5_armhf.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../04-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../06-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../09-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../10-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../16-libtcl8.6_8.6.11+dfsg-1_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.11+dfsg-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../17-libbrotli1_1.0.9-2+b2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../18-libpng16-16_1.6.37-3_armhf.deb ... Unpacking libpng16-16:armhf (1.6.37-3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../19-libfreetype6_2.10.4+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.10.4+dfsg-1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../20-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../21-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../22-libfontconfig1_2.13.1-4.2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-4.2) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../23-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../24-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../25-libbsd0_0.11.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../26-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../27-libxcb1_1.14-3_armhf.deb ... Unpacking libxcb1:armhf (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../28-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../29-libx11-6_2%3a1.7.1-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.7.1-1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../30-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../31-libxft2_2.3.2-2_armhf.deb ... Unpacking libxft2:armhf (2.3.2-2) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../32-libxext6_2%3a1.3.3-1.1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.3-1.1) ... Selecting previously unselected package x11-common. Preparing to unpack .../33-x11-common_1%3a7.7+22_all.deb ... Unpacking x11-common (1:7.7+22) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../34-libxss1_1%3a1.2.3-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../35-libtk8.6_8.6.11-2_armhf.deb ... Unpacking libtk8.6:armhf (8.6.11-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../36-tk8.6-blt2.5_2.5.3+dfsg-4.1_armhf.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../37-blt_2.5.3+dfsg-4.1_armhf.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../38-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../39-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../40-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../41-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../42-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../43-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../44-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../45-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../46-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../47-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../48-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../49-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../50-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../51-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../52-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../53-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../54-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../55-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../56-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../57-libblas3_3.9.0-3_armhf.deb ... Unpacking libblas3:armhf (3.9.0-3) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../58-libdeflate0_1.7-1_armhf.deb ... Unpacking libdeflate0:armhf (1.7-1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../59-libgfortran5_10.2.1-6_armhf.deb ... Unpacking libgfortran5:armhf (10.2.1-6) ... Selecting previously unselected package libimagequant0:armhf. Preparing to unpack .../60-libimagequant0_2.12.2-1.1_armhf.deb ... Unpacking libimagequant0:armhf (2.12.2-1.1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../61-libjbig0_2.1-3.1+b2_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../62-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../63-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../64-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../65-liblapack3_3.9.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.9.0-3) ... Selecting previously unselected package liblbfgsb0:armhf. Preparing to unpack .../66-liblbfgsb0_3.0+dfsg.3-9_armhf.deb ... Unpacking liblbfgsb0:armhf (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:armhf. Preparing to unpack .../67-liblcms2-2_2.12~rc1-2_armhf.deb ... Unpacking liblcms2-2:armhf (2.12~rc1-2) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../68-libwebp6_0.6.1-2.1_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2.1) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../69-libtiff5_4.2.0-1_armhf.deb ... Unpacking libtiff5:armhf (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:armhf. Preparing to unpack .../70-libwebpdemux2_0.6.1-2.1_armhf.deb ... Unpacking libwebpdemux2:armhf (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:armhf. Preparing to unpack .../71-libwebpmux3_0.6.1-2.1_armhf.deb ... Unpacking libwebpmux3:armhf (0.6.1-2.1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../72-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../73-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../74-python3-numpy_1%3a1.19.5-1_armhf.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-reportlab-accel:armhf. Preparing to unpack .../75-python3-reportlab-accel_3.5.59-2_armhf.deb ... Unpacking python3-reportlab-accel:armhf (3.5.59-2) ... Selecting previously unselected package python3-pil:armhf. Preparing to unpack .../76-python3-pil_8.1.2+dfsg-0.3_armhf.deb ... Unpacking python3-pil:armhf (8.1.2+dfsg-0.3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../77-python3-reportlab_3.5.59-2_all.deb ... Unpacking python3-reportlab (3.5.59-2) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../78-python3-biopython_1.78+dfsg-4_armhf.deb ... Unpacking python3-biopython (1.78+dfsg-4) ... Selecting previously unselected package python3-six. Preparing to unpack .../79-python3-six_1.16.0-1_all.deb ... Unpacking python3-six (1.16.0-1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../80-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../81-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../82-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../83-python3-joblib_0.17.0-4_all.deb ... Unpacking python3-joblib (0.17.0-4) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../84-python3-kiwisolver_1.3.1-1+b1_armhf.deb ... Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../85-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../86-python3-matplotlib_3.3.4-1_armhf.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../87-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-pandas-lib:armhf. Preparing to unpack .../88-python3-pandas-lib_1.1.5+dfsg-2_armhf.deb ... Unpacking python3-pandas-lib:armhf (1.1.5+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../89-python3-pandas_1.1.5+dfsg-2_all.deb ... Unpacking python3-pandas (1.1.5+dfsg-2) ... Selecting previously unselected package python3-progressbar. Preparing to unpack .../90-python3-progressbar_2.5-2_all.deb ... Unpacking python3-progressbar (2.5-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../91-python3-scipy_1.6.0-2_armhf.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../92-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-sklearn-lib:armhf. Preparing to unpack .../93-python3-sklearn-lib_0.23.2-5_armhf.deb ... Unpacking python3-sklearn-lib:armhf (0.23.2-5) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../94-python3-threadpoolctl_2.1.0-1_all.deb ... Unpacking python3-threadpoolctl (2.1.0-1) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../95-python3-sklearn_0.23.2-5_all.deb ... Unpacking python3-sklearn (0.23.2-5) ... Selecting previously unselected package python3-tk:armhf. Preparing to unpack .../96-python3-tk_3.9.2-1_armhf.deb ... Unpacking python3-tk:armhf (3.9.2-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up liblcms2-2:armhf (2.12~rc1-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:armhf (1:5.39-3) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up libx11-data (2:1.7.1-1) ... Setting up libncurses6:armhf (6.2+20201114-2) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libimagequant0:armhf (2.12.2-1.1) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up libtcl8.6:armhf (8.6.11+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:armhf (0.6.1-2.1) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:armhf (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:armhf (0.6.1-2.1) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libprocps8:armhf (2:3.3.17-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:armhf (0.6.1-2.1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libx11-6:armhf (2:1.7.1-1) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:armhf (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libtk8.6:armhf (8.6.11-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-1) ... Setting up python3-progressbar (2.5-2) ... Setting up python3-pil:armhf (8.1.2+dfsg-0.3) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:armhf (3.5.59-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-joblib (0.17.0-4) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-threadpoolctl (2.1.0-1) ... Setting up python3-tk:armhf (3.9.2-1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-pandas-lib:armhf (1.1.5+dfsg-2) ... Setting up python3-sklearn-lib:armhf (0.23.2-5) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-sklearn (0.23.2-5) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-pauvre-0.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pauvre_0.2.2-2_source.changes dpkg-buildpackage: info: source package python-pauvre dpkg-buildpackage: info: source version 0.2.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/functions.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/gfftools.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/rcparams.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/version.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/synplot.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/redwood.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/browser.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/__init__.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/stats.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/bamparse.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/custommargin.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/marginplot.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre copying pauvre/pauvre_main.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre creating /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi copying pauvre/lsi/helper.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi copying pauvre/lsi/T.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi copying pauvre/lsi/Q.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi copying pauvre/lsi/__init__.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi copying pauvre/lsi/lsi.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi copying pauvre/lsi/test.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi creating /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests copying pauvre/tests/__init__.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests copying pauvre/tests/test_synplot.py -> /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pauvre-0.2.2' PYBUILDDIR="$(echo "/build/python-pauvre-0.2.2"/.pybuild/cpython3_3.*/build)" \ && mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \ "${PYBUILDDIR}/pauvre/tests/testresults" \ && cp -r "/build/python-pauvre-0.2.2/debian/tests/gff_files" \ "${PYBUILDDIR}/pauvre/tests/testdata" \ && BUILDDIR="${PYBUILDDIR}" PATH="/build/python-pauvre-0.2.2/debian/bin:$PATH" \ dh_auto_test \ && rm "${PYBUILDDIR}/input" \ && rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \ "${PYBUILDDIR}/pauvre/tests/testresults" I: pybuild base:232: cd /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build; python3.9 -m unittest discover -v test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case) This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build + PYTHONPATH=/build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build + exec python3 /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi' /usr/lib/python3/dist-packages/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module. warnings.warn( 0% | | 1% | | 2% |# | 3% |## | 4% |## | 5% |### | 6% |#### | 7% |##### | 8% |##### | 9% |###### | 10% |####### | 11% |######## | 12% |######## | 13% |######### | 14% |########## | 15% |########### | 16% |########### | 17% |############ | 18% |############# | 19% |############# | 20% |############## | 21% |############### | 22% |################ | 23% |################ | 24% |################# | 25% |################## | 26% |################### | 27% |################### | 28% |#################### | 29% |##################### | 30% |###################### | 31% |###################### | 32% |####################### | 33% |######################## | 34% |######################### | 35% |######################### | 36% |########################## | 37% |########################### | 38% |########################### | 39% |############################ | 40% |############################# | 41% |############################## | 42% |############################## | 43% |############################### | 44% |################################ | 45% |################################# | 47% |################################# | 48% |################################## | 49% |################################### | 50% |#################################### | 51% |#################################### | 52% |##################################### | 53% |###################################### | 54% |####################################### | 55% |####################################### | 56% |######################################## | 57% |######################################### | 58% |######################################### | 59% |########################################## | 60% |########################################### | 61% |############################################ | 62% |############################################ | 63% |############################################# | 64% |############################################## | 65% |############################################### | 66% |############################################### | 67% |################################################ | 68% |################################################# | 69% |################################################## | 70% |################################################## | 71% |################################################### | 72% |#################################################### | 73% |#################################################### | 74% |##################################################### | 75% |###################################################### | 76% |####################################################### | 77% |####################################################### | 78% |######################################################## | 79% |######################################################### | 80% |########################################################## | 81% |########################################################## | 82% |########################################################### | 83% |############################################################ | 84% |############################################################# | 85% |############################################################# | 86% |############################################################## | 87% |############################################################### | 88% |################################################################ | 89% |################################################################ | 90% |################################################################# | 91% |################################################################## | 93% |################################################################## | 94% |################################################################### | 95% |#################################################################### | 96% |##################################################################### | 97% |##################################################################### | 98% |###################################################################### | 99% |####################################################################### | 100% |########################################################################| - Setting tick labels. /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/synplot.py:561: UserWarning: FixedFormatter should only be used together with FixedLocator panel0.set_xticklabels(empty_string_labels) - Running print_images. findfont: Font family ['sans-serif'] not found. Falling back to DejaVu Sans. findfont: Font family ['sans-serif'] not found. Falling back to DejaVu Sans. Line sweep results: TIME ELAPSED: 0.0036611557006835938 N^2 comparison results: 0 TIME ELAPSED: 0.0007467269897460938 5 5 The data is: Namespace(command='synplot', QUIET=False, aln_dir='/build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/alignments', center_on='COX1', dpi=600, fileform=['pdf'], gff_paths=['/build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff', '/build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff', '/build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff'], gff_labels=['B. forskalii', 'P. bachei', 'M. leidyi'], no_timestamp=False, optimum_order=False, BASENAME=None, ratio=None, sandwich=False, start_with_aligned_genes=False, stop_codons=True, transparent=True, func=) The best gene combination is [0, 1, 2] new fewest global intersections: 42 new fewest global intersections: 40 new fewest global intersections: 38 new fewest global intersections: 34 new fewest global intersections: 32 getting alignments file list is: {} done getting alignments seqs_dict is: {} sequence source featType start stop strand tags name center width lmost rmost track 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 len plottable 15 - i,j are currently: 0,1 stop: -782. start: -760. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 - i,j are currently: 1,1 stop: 761. start: 1119. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 - i,j are currently: 2,1 stop: 1495. start: 1495. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 - i,j are currently: 3,1 stop: 2355. start: 2338. - i,j are currently: 3,2 stop: 2355. start: 2547. - putting elements 3 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 1 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 4,1 stop: 2539. start: 2547. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 5,1 stop: 3288. start: 3563. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 - i,j are currently: 6,1 stop: 3935. start: 3938. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 - i,j are currently: 7,1 stop: 5018. start: 5020. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 - i,j are currently: 8,1 stop: 5206. start: 5220. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 - i,j are currently: 9,1 stop: 6696. start: 6847. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 - i,j are currently: 10,1 stop: 7909. start: 8439. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 - i,j are currently: 11,1 stop: 9105. start: 9255. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 - i,j are currently: 12,1 stop: 9981. start: 10102. - putting elements 12 through (including) 13 together index sequence source featType start stop strand tags name center width lmost rmost track 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 - i,j are currently: 13,1 stop: 11155. start: 11076. index sequence source featType start stop strand tags name center width lmost rmost track 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 1 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 normal path is: Path(array([[-1342. , 2.27], [ -862. , 2.27], [ -782. , 2. ], [ -862. , 1.73], [-1342. , 1.73], [-1342. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-1342, 2.27) ...) length of myPatches is: 1 normal path is: Path(array([[-760. , 2.27], [ 681. , 2.27], [ 761. , 2. ], [ 681. , 1.73], [-760. , 1.73], [-760. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 2.27) ...) length of myPatches is: 2 normal path is: Path(array([[1119. , 2.27], [1415. , 2.27], [1495. , 2. ], [1415. , 1.73], [1119. , 1.73], [1119. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1119, 2.27) ...) length of myPatches is: 3 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((1495, 2.27) ...) length of myPatches is: 4 there are 2 patches after gffplot_feature_hori PathPatch7((2338, 2.27) ...) length of myPatches is: 5 normal path is: Path(array([[2.338e+03, 2.270e+00], [2.459e+03, 2.270e+00], [2.539e+03, 2.000e+00], [2.459e+03, 1.730e+00], [2.338e+03, 1.730e+00], [2.338e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2338, 2.27) ...) length of myPatches is: 6 normal path is: Path(array([[2.547e+03, 2.270e+00], [3.208e+03, 2.270e+00], [3.288e+03, 2.000e+00], [3.208e+03, 1.730e+00], [2.547e+03, 1.730e+00], [2.547e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2547, 2.27) ...) length of myPatches is: 7 normal path is: Path(array([[3.563e+03, 2.270e+00], [3.855e+03, 2.270e+00], [3.935e+03, 2.000e+00], [3.855e+03, 1.730e+00], [3.563e+03, 1.730e+00], [3.563e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3563, 2.27) ...) length of myPatches is: 8 normal path is: Path(array([[3.938e+03, 2.270e+00], [4.938e+03, 2.270e+00], [5.018e+03, 2.000e+00], [4.938e+03, 1.730e+00], [3.938e+03, 1.730e+00], [3.938e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3938, 2.27) ...) length of myPatches is: 9 normal path is: Path(array([[5.020e+03, 2.270e+00], [5.126e+03, 2.270e+00], [5.206e+03, 2.000e+00], [5.126e+03, 1.730e+00], [5.020e+03, 1.730e+00], [5.020e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5020, 2.27) ...) length of myPatches is: 10 normal path is: Path(array([[5.220e+03, 2.270e+00], [6.616e+03, 2.270e+00], [6.696e+03, 2.000e+00], [6.616e+03, 1.730e+00], [5.220e+03, 1.730e+00], [5.220e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5220, 2.27) ...) length of myPatches is: 11 normal path is: Path(array([[6.847e+03, 2.270e+00], [7.829e+03, 2.270e+00], [7.909e+03, 2.000e+00], [7.829e+03, 1.730e+00], [6.847e+03, 1.730e+00], [6.847e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6847, 2.27) ...) length of myPatches is: 12 normal path is: Path(array([[8.439e+03, 2.270e+00], [9.025e+03, 2.270e+00], [9.105e+03, 2.000e+00], [9.025e+03, 1.730e+00], [8.439e+03, 1.730e+00], [8.439e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8439, 2.27) ...) length of myPatches is: 13 normal path is: Path(array([[9.255e+03, 2.270e+00], [9.901e+03, 2.270e+00], [9.981e+03, 2.000e+00], [9.901e+03, 1.730e+00], [9.255e+03, 1.730e+00], [9.255e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9255, 2.27) ...) length of myPatches is: 14 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((10102, 2.27) ...) length of myPatches is: 15 there are 2 patches after gffplot_feature_hori PathPatch7((11076, 2.27) ...) length of myPatches is: 16 There are 16 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 len plottable 13 - i,j are currently: 0,1 stop: 768. start: 892. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 - i,j are currently: 1,1 stop: 1470. start: 1750. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 - i,j are currently: 2,1 stop: 2692. start: 2723. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 - i,j are currently: 3,1 stop: 3285. start: 3286. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 - i,j are currently: 4,1 stop: 4023. start: 4034. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 - i,j are currently: 5,1 stop: 4699. start: 4753. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 - i,j are currently: 6,1 stop: 5070. start: 5074. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 - i,j are currently: 7,1 stop: 6141. start: 6306. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 - i,j are currently: 8,1 stop: 7385. start: 7390. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 - i,j are currently: 9,1 stop: 8901. start: 8904. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 - i,j are currently: 10,1 stop: 9740. start: 9743. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 - i,j are currently: 11,1 stop: 9937. start: 10035. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 index sequence source featType start stop strand tags name center width lmost rmost track 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 normal path is: Path(array([[-7.67e+02, 1.27e+00], [ 6.88e+02, 1.27e+00], [ 7.68e+02, 1.00e+00], [ 6.88e+02, 7.30e-01], [-7.67e+02, 7.30e-01], [-7.67e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-767, 1.27) ...) length of myPatches is: 1 normal path is: Path(array([[8.92e+02, 1.27e+00], [1.39e+03, 1.27e+00], [1.47e+03, 1.00e+00], [1.39e+03, 7.30e-01], [8.92e+02, 7.30e-01], [8.92e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((892, 1.27) ...) length of myPatches is: 2 normal path is: Path(array([[1.750e+03, 1.270e+00], [2.612e+03, 1.270e+00], [2.692e+03, 1.000e+00], [2.612e+03, 7.300e-01], [1.750e+03, 7.300e-01], [1.750e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1750, 1.27) ...) length of myPatches is: 3 normal path is: Path(array([[2.723e+03, 1.270e+00], [3.205e+03, 1.270e+00], [3.285e+03, 1.000e+00], [3.205e+03, 7.300e-01], [2.723e+03, 7.300e-01], [2.723e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2723, 1.27) ...) length of myPatches is: 4 normal path is: Path(array([[3.286e+03, 1.270e+00], [3.943e+03, 1.270e+00], [4.023e+03, 1.000e+00], [3.943e+03, 7.300e-01], [3.286e+03, 7.300e-01], [3.286e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3286, 1.27) ...) length of myPatches is: 5 normal path is: Path(array([[4.034e+03, 1.270e+00], [4.619e+03, 1.270e+00], [4.699e+03, 1.000e+00], [4.619e+03, 7.300e-01], [4.034e+03, 7.300e-01], [4.034e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4034, 1.27) ...) length of myPatches is: 6 normal path is: Path(array([[4.753e+03, 1.270e+00], [4.990e+03, 1.270e+00], [5.070e+03, 1.000e+00], [4.990e+03, 7.300e-01], [4.753e+03, 7.300e-01], [4.753e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4753, 1.27) ...) length of myPatches is: 7 normal path is: Path(array([[5.074e+03, 1.270e+00], [6.061e+03, 1.270e+00], [6.141e+03, 1.000e+00], [6.061e+03, 7.300e-01], [5.074e+03, 7.300e-01], [5.074e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5074, 1.27) ...) length of myPatches is: 8 normal path is: Path(array([[6.306e+03, 1.270e+00], [7.305e+03, 1.270e+00], [7.385e+03, 1.000e+00], [7.305e+03, 7.300e-01], [6.306e+03, 7.300e-01], [6.306e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6306, 1.27) ...) length of myPatches is: 9 normal path is: Path(array([[7.390e+03, 1.270e+00], [8.821e+03, 1.270e+00], [8.901e+03, 1.000e+00], [8.821e+03, 7.300e-01], [7.390e+03, 7.300e-01], [7.390e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((7390, 1.27) ...) length of myPatches is: 10 normal path is: Path(array([[8.904e+03, 1.270e+00], [9.660e+03, 1.270e+00], [9.740e+03, 1.000e+00], [9.660e+03, 7.300e-01], [8.904e+03, 7.300e-01], [8.904e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8904, 1.27) ...) length of myPatches is: 11 normal path is: Path(array([[9.743e+03, 1.270e+00], [9.857e+03, 1.270e+00], [9.937e+03, 1.000e+00], [9.857e+03, 7.300e-01], [9.743e+03, 7.300e-01], [9.743e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9743, 1.27) ...) length of myPatches is: 12 normal path is: Path(array([[1.0035e+04, 1.2700e+00], [1.0152e+04, 1.2700e+00], [1.0232e+04, 1.0000e+00], [1.0152e+04, 7.3000e-01], [1.0035e+04, 7.3000e-01], [1.0035e+04, 1.2700e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((10035, 1.27) ...) length of myPatches is: 13 There are 13 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 len plottable 13 - i,j are currently: 0,1 stop: 760. start: 764. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 - i,j are currently: 1,1 stop: 1486. start: 1486. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 - i,j are currently: 2,1 stop: 1809. start: 1813. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 - i,j are currently: 3,1 stop: 2388. start: 2392. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 - i,j are currently: 4,1 stop: 2759. start: 2760. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 - i,j are currently: 5,1 stop: 3637. start: 3638. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 - i,j are currently: 6,1 stop: 4729. start: 4734. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 - i,j are currently: 7,1 stop: 5456. start: 5460. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 - i,j are currently: 8,1 stop: 5654. start: 5766. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 - i,j are currently: 9,1 stop: 7169. start: 7172. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 - i,j are currently: 10,1 stop: 8038. start: 8014. - i,j are currently: 10,2 stop: 8038. start: 9086. - putting elements 10 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 1 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 - i,j are currently: 11,1 stop: 9096. start: 9086. index sequence source featType start stop strand tags name center width lmost rmost track 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 1 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 normal path is: Path(array([[-7.6e+02, 2.7e-01], [ 6.8e+02, 2.7e-01], [ 7.6e+02, 0.0e+00], [ 6.8e+02, -2.7e-01], [-7.6e+02, -2.7e-01], [-7.6e+02, 2.7e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 0.27) ...) length of myPatches is: 1 normal path is: Path(array([[ 7.640e+02, 2.700e-01], [ 1.406e+03, 2.700e-01], [ 1.486e+03, 0.000e+00], [ 1.406e+03, -2.700e-01], [ 7.640e+02, -2.700e-01], [ 7.640e+02, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((764, 0.27) ...) length of myPatches is: 2 normal path is: Path(array([[ 1.486e+03, 2.700e-01], [ 1.729e+03, 2.700e-01], [ 1.809e+03, 0.000e+00], [ 1.729e+03, -2.700e-01], [ 1.486e+03, -2.700e-01], [ 1.486e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1486, 0.27) ...) length of myPatches is: 3 normal path is: Path(array([[ 1.813e+03, 2.700e-01], [ 2.308e+03, 2.700e-01], [ 2.388e+03, 0.000e+00], [ 2.308e+03, -2.700e-01], [ 1.813e+03, -2.700e-01], [ 1.813e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1813, 0.27) ...) length of myPatches is: 4 normal path is: Path(array([[ 2.392e+03, 2.700e-01], [ 2.679e+03, 2.700e-01], [ 2.759e+03, 0.000e+00], [ 2.679e+03, -2.700e-01], [ 2.392e+03, -2.700e-01], [ 2.392e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2392, 0.27) ...) length of myPatches is: 5 normal path is: Path(array([[ 2.760e+03, 2.700e-01], [ 3.557e+03, 2.700e-01], [ 3.637e+03, 0.000e+00], [ 3.557e+03, -2.700e-01], [ 2.760e+03, -2.700e-01], [ 2.760e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2760, 0.27) ...) length of myPatches is: 6 normal path is: Path(array([[ 3.638e+03, 2.700e-01], [ 4.649e+03, 2.700e-01], [ 4.729e+03, 0.000e+00], [ 4.649e+03, -2.700e-01], [ 3.638e+03, -2.700e-01], [ 3.638e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3638, 0.27) ...) length of myPatches is: 7 normal path is: Path(array([[ 4.734e+03, 2.700e-01], [ 5.376e+03, 2.700e-01], [ 5.456e+03, 0.000e+00], [ 5.376e+03, -2.700e-01], [ 4.734e+03, -2.700e-01], [ 4.734e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4734, 0.27) ...) length of myPatches is: 8 normal path is: Path(array([[ 5.460e+03, 2.700e-01], [ 5.574e+03, 2.700e-01], [ 5.654e+03, 0.000e+00], [ 5.574e+03, -2.700e-01], [ 5.460e+03, -2.700e-01], [ 5.460e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5460, 0.27) ...) length of myPatches is: 9 normal path is: Path(array([[ 5.766e+03, 2.700e-01], [ 7.089e+03, 2.700e-01], [ 7.169e+03, 0.000e+00], [ 7.089e+03, -2.700e-01], [ 5.766e+03, -2.700e-01], [ 5.766e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5766, 0.27) ...) length of myPatches is: 10 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((7172, 0.27) ...) length of myPatches is: 11 there are 2 patches after gffplot_feature_hori PathPatch7((8014, 0.27) ...) length of myPatches is: 12 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((8014, 0.27) ...) length of myPatches is: 13 there are 2 patches after gffplot_feature_hori PathPatch7((9086, 0.27) ...) length of myPatches is: 14 There are 14 patches at the end of gffplot_horizontal() ok ---------------------------------------------------------------------- Ran 1 test in 151.903s OK The return code is: 0 make[1]: Leaving directory '/build/python-pauvre-0.2.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-pauvre-0.2.2/debian/python3-pauvre running install running build running build_py running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' running install_lib creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9 creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/functions.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/__pycache__/rcparams.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/__pycache__/synplot.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/__pycache__/functions.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/__pycache__/version.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/__pycache__/__init__.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/__pycache__/gfftools.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/gfftools.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/rcparams.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/version.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/synplot.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/redwood.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/browser.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/__pycache__/T.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/__pycache__/Q.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/__pycache__/test.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/__pycache__/__init__.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/__pycache__/lsi.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/__pycache__/helper.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/helper.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/T.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/Q.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/__init__.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/lsi.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/lsi/test.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests creating /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/__pycache__/__init__.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/__pycache__/test_synplot.cpython-39.pyc -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests/__pycache__ copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/__init__.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/tests/test_synplot.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/__init__.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/stats.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/bamparse.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/custommargin.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/marginplot.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre copying /build/python-pauvre-0.2.2/.pybuild/cpython3_3.9_pauvre/build/pauvre/pauvre_main.py -> /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/functions.py to functions.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/gfftools.py to gfftools.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/rcparams.py to rcparams.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/version.py to version.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/synplot.py to synplot.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/redwood.py to redwood.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/browser.py to browser.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/helper.py to helper.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/T.py to T.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/Q.py to Q.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/lsi.py to lsi.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/lsi/test.py to test.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/tests/test_synplot.py to test_synplot.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/stats.py to stats.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/bamparse.py to bamparse.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/custommargin.py to custommargin.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/marginplot.py to marginplot.cpython-39.pyc byte-compiling /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre/pauvre_main.py to pauvre_main.cpython-39.pyc running install_egg_info Copying pauvre.egg-info to /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/lib/python3.9/dist-packages/pauvre-0.2.2.egg-info Skipping SOURCES.txt running install_scripts Installing pauvre script to /build/python-pauvre-0.2.2/debian/python3-pauvre/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/python-pauvre-0.2.2' # Do not install test script in Python lib find debian -name scripts -type d | xargs rm -rf dh_installexamples sed -i 's/^git clone/#&/' `find debian -name test.sh` make[1]: Leaving directory '/build/python-pauvre-0.2.2' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pauvre' in '../python3-pauvre_0.2.2-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pauvre_0.2.2-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32028 and its subdirectories I: Current time: Tue Jul 27 17:47:22 -12 2021 I: pbuilder-time-stamp: 1627451242 Wed Jul 28 05:47:31 UTC 2021 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Wed Jul 28 05:47:31 UTC 2021 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Wed Jul 28 05:55:08 UTC 2021 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Wed Jul 28 05:55:10 UTC 2021 I: python-pauvre_0.2.2-2_armhf.changes: Format: 1.8 Date: Wed, 08 Jul 2020 18:40:39 +0200 Source: python-pauvre Binary: python3-pauvre Architecture: all Version: 0.2.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-pauvre - QC and genome browser plotting Oxford Nanopore and PacBio long re Closes: 962698 Changes: python-pauvre (0.2.2-2) unstable; urgency=medium . * Added myself as uploader. * Added (build-)dependency on python3-tk (Closes: #962698) * Cleanup test data after build time tests; this reduces the weight of the python3-pauvre package, and improve reproducible builds. * Added ref to bioconda (Steffen Moeller) Checksums-Sha1: 1c13b59809b5ebca12dae7eecce3e1fa95a483ac 7039 python-pauvre_0.2.2-2_armhf.buildinfo c81f4f5e10750d037bb1d9b579250e28e54e11e0 51364 python3-pauvre_0.2.2-2_all.deb Checksums-Sha256: 4e916d8d5689f47208d95a4367aafcbe7baafebbb6a7e43cbc0dc038ac9eb788 7039 python-pauvre_0.2.2-2_armhf.buildinfo 3c84bcfc719b81fcf443a6b468ebfdcd17fdc1d062a78e2d8a4ad7cc35e748cc 51364 python3-pauvre_0.2.2-2_all.deb Files: 43428b44db4152ba41f30dd6a05f742b 7039 science optional python-pauvre_0.2.2-2_armhf.buildinfo 61a26dfb5a15333c41b878711cc1cc44 51364 python optional python3-pauvre_0.2.2-2_all.deb Wed Jul 28 05:55:12 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.TyiGow80qm/python-pauvre_0.2.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.TyiGow80qm/python-pauvre_0.2.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.TyiGow80qm/python-pauvre_0.2.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.TyiGow80qm/b1/python-pauvre_0.2.2-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.TyiGow80qm/b2/python-pauvre_0.2.2-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.550s) 0.550s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.040s) 0.039s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jul 28 05:55:15 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Jul 28 05:55:15 UTC 2021 I: python-pauvre from bullseye built successfully and reproducibly on armhf. Wed Jul 28 05:55:16 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jul 28 05:55:17 UTC 2021 I: Submitting 8.0K b1/python-pauvre_0.2.2-2_armhf.buildinfo.asc Wed Jul 28 05:55:18 UTC 2021 I: Submitting 8.0K b2/python-pauvre_0.2.2-2_armhf.buildinfo.asc Wed Jul 28 05:55:19 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 28 05:55:19 UTC 2021 I: Done submitting .buildinfo files. Wed Jul 28 05:55:19 UTC 2021 I: Removing signed python-pauvre_0.2.2-2_armhf.buildinfo.asc files: removed './b1/python-pauvre_0.2.2-2_armhf.buildinfo.asc' removed './b2/python-pauvre_0.2.2-2_armhf.buildinfo.asc'