Sat Jun 19 12:27:41 UTC 2021 I: starting to build andi/bullseye/i386 on jenkins on '2021-06-19 12:27' Sat Jun 19 12:27:41 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/15828/console.log Sat Jun 19 12:27:41 UTC 2021 I: Downloading source for bullseye/andi=0.13-3 --2021-06-19 12:27:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/andi/andi_0.13-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2010 (2.0K) Saving to: ‘andi_0.13-3.dsc’ 0K . 100% 122M=0s 2021-06-19 12:27:41 (122 MB/s) - ‘andi_0.13-3.dsc’ saved [2010/2010] Sat Jun 19 12:27:41 UTC 2021 I: andi_0.13-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: andi Binary: andi Architecture: any Version: 0.13-3 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl Homepage: https://github.com/EvolBioInf/andi Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/andi Vcs-Git: https://salsa.debian.org/med-team/andi.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 12), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev Package-List: andi deb science optional arch=any Checksums-Sha1: 6c6a0b02dd4084162d135dda3d0e7609fbddf613 531413 andi_0.13.orig.tar.gz 0b9bd66c1c93ec5cb1520b0a99e7a3875f6fdbc1 11128 andi_0.13-3.debian.tar.xz Checksums-Sha256: 3fb11f5399efdcbf98ecbbaa95b1a6cd98f887cf78554e460dc3f18d4880ae3e 531413 andi_0.13.orig.tar.gz b5253c49e97ae6c2d5e2b31a3e85640ce42406ab671f589eb3c2e6d16ef4f063 11128 andi_0.13-3.debian.tar.xz Files: 5918d4786535aa4e3e62279bf79fba76 531413 andi_0.13.orig.tar.gz 8520b1640670707ea90c48cb8b92541c 11128 andi_0.13-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6K9NMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtECrQ/+OjsOuPLt2CE4u2a+Ogm4cfMkQBlO6M9o x7FxHzZdprTH+dmknPvK7vw5vFXm+nPLcWC1DGqP9rr+EhGSt3w+BmxhqzG2IecJ rTPdSzTIjt2uaY+G5GSl4ePnq4rdpYkJ+UflKBR22dlFpQjxPUP6Ij5IKoae/gfk 3O0q9PJtrkjJp+48i9WJEYTA6zO0kDwrY9nuwtX0h+WNOR27c8j6z1KIZioKjSFD XTKJqT3h3tBH2pnkbyn/54AG8QGP1D1yXgjfalIFXtJeZVeut1l4XDmMCIL1Chgy xGLDkSkleXiIzkmXmJClXZX5XYmgkn7wC2MmL3O+zIU/pU7Lp821hWhMWVJIBRZ9 ZE3VTgKk+8DHOdtjwZLQG1a7YKOATnuOhBmkrugkodmeOZOc83sKPWsp5mxsmarD ITH26mM8NjN0tzwFKipJRCdvNhMk3Y4YT93lB/9OkkrgZ9mSpGsUummfR+OPSpNz astpu6Is1wcaByzbo2twSxQxvsJvgLC6UPJQJUYM4IVUmXQRPlM2GFCXefkvzZt3 ymE0+DEfOnmTLYRaSSeCBc5bJLM/kTErvgmg3sXt4+wcq4fQI83tZV4G0Nrtjk/N 7RPT6eN37KEo6TqA/ZyAti1hO//szmPKYA+SdfBEMWXsb0kxQcm1Q4RbxXHX15Is ZoajrQ+7ZWo= =ezOV -----END PGP SIGNATURE----- Sat Jun 19 12:27:41 UTC 2021 I: Checking whether the package is not for us Sat Jun 19 12:27:41 UTC 2021 I: Starting 1st build on remote node ionos16-i386.debian.net. Sat Jun 19 12:27:41 UTC 2021 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Sat Jun 19 12:28:33 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 22 06:50:41 -12 2022 I: pbuilder-time-stamp: 1658515841 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [andi_0.13-3.dsc] I: copying [./andi_0.13.orig.tar.gz] I: copying [./andi_0.13-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.tvvi3HSU/trustedkeys.kbx': General error gpgv: Signature made Sun Apr 5 21:22:27 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./andi_0.13-3.dsc dpkg-source: info: extracting andi in andi-0.13 dpkg-source: info: unpacking andi_0.13.orig.tar.gz dpkg-source: info: unpacking andi_0.13-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21790/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='774c096447fe42139cc186489c3ea3b0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='21790' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.fl4OPqjWIO/pbuilderrc_6WO1 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.fl4OPqjWIO/b1 --logfile b1/build.log andi_0.13-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 21 03:46 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/21790/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libmpdec3{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libselinux1-dev{a} libsepol1-dev{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pkgconf{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 35.0 MB of archives. After unpacking 135 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 uuid-dev i386 2.36.1-7 [99.2 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libblkid-dev i386 2.36.1-7 [245 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libdivsufsort3 i386 2.0.1-5 [49.5 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libdivsufsort-dev i386 2.0.1-5 [19.1 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libffi-dev i386 3.3-6 [54.7 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libglib2.0-data all 2.66.8-1 [1164 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libglib2.0-bin i386 2.66.8-1 [144 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libglib2.0-dev-bin i386 2.66.8-1 [179 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libsepol1-dev i386 3.1-1 [377 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libpcre2-16-0 i386 10.36-2 [231 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libpcre2-32-0 i386 10.36-2 [219 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libpcre2-posix2 i386 10.36-2 [49.2 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libpcre2-dev i386 10.36-2 [739 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libselinux1-dev i386 3.1-3 [177 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libmount-dev i386 2.36.1-7 [77.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libpcre16-3 i386 2:8.39-13 [258 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libpcre32-3 i386 2:8.39-13 [249 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libpcrecpp0v5 i386 2:8.39-13 [153 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libpcre3-dev i386 2:8.39-13 [656 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libpkgconf3 i386 1.7.4~git20210206+dcf529b-3 [37.1 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 pkgconf i386 1.7.4~git20210206+dcf529b-3 [42.1 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libglib2.0-dev i386 2.66.8-1 [1688 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libgslcblas0 i386 2.6+dfsg-2 [99.2 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libgsl25 i386 2.6+dfsg-2 [911 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libgsl-dev i386 2.6+dfsg-2 [1146 kB] Fetched 35.0 MB in 1s (31.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. 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Unpacking libpcre16-3:i386 (2:8.39-13) ... Selecting previously unselected package libpcre32-3:i386. Preparing to unpack .../46-libpcre32-3_2%3a8.39-13_i386.deb ... Unpacking libpcre32-3:i386 (2:8.39-13) ... Selecting previously unselected package libpcrecpp0v5:i386. Preparing to unpack .../47-libpcrecpp0v5_2%3a8.39-13_i386.deb ... Unpacking libpcrecpp0v5:i386 (2:8.39-13) ... Selecting previously unselected package libpcre3-dev:i386. Preparing to unpack .../48-libpcre3-dev_2%3a8.39-13_i386.deb ... Unpacking libpcre3-dev:i386 (2:8.39-13) ... Selecting previously unselected package libpkgconf3:i386. Preparing to unpack .../49-libpkgconf3_1.7.4~git20210206+dcf529b-3_i386.deb ... Unpacking libpkgconf3:i386 (1.7.4~git20210206+dcf529b-3) ... Selecting previously unselected package pkgconf. Preparing to unpack .../50-pkgconf_1.7.4~git20210206+dcf529b-3_i386.deb ... Adding 'diversion of /usr/bin/pkg-config to /usr/bin/pkg-config.real by pkgconf' Adding 'diversion of /usr/share/aclocal/pkg.m4 to /usr/share/aclocal/pkg.real.m4 by pkgconf' Adding 'diversion of /usr/share/man/man1/pkg-config.1.gz to /usr/share/man/man1/pkg-config.real.1.gz by pkgconf' Adding 'diversion of /usr/share/pkg-config-crosswrapper to /usr/share/pkg-config-crosswrapper.real by pkgconf' Unpacking pkgconf (1.7.4~git20210206+dcf529b-3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../51-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libglib2.0-dev:i386. Preparing to unpack .../52-libglib2.0-dev_2.66.8-1_i386.deb ... Unpacking libglib2.0-dev:i386 (2.66.8-1) ... Selecting previously unselected package libgslcblas0:i386. Preparing to unpack .../53-libgslcblas0_2.6+dfsg-2_i386.deb ... Unpacking libgslcblas0:i386 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:i386. Preparing to unpack .../54-libgsl25_2.6+dfsg-2_i386.deb ... Unpacking libgsl25:i386 (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../55-libgsl-dev_2.6+dfsg-2_i386.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Setting up media-types (4.0.0) ... Setting up libpcrecpp0v5:i386 (2:8.39-13) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:i386 (2:8.39-13) ... Setting up libicu67:i386 (67.1-6) ... Setting up libgslcblas0:i386 (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:i386 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up libsepol1-dev:i386 (3.1-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libffi-dev:i386 (3.3-6) ... Setting up libpcre2-16-0:i386 (10.36-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:i386 (10.36-2) ... Setting up libglib2.0-data (2.66.8-1) ... Setting up libpkgconf3:i386 (1.7.4~git20210206+dcf529b-3) ... Setting up uuid-dev:i386 (2.36.1-7) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libpcre32-3:i386 (2:8.39-13) ... Setting up autopoint (0.21-4) ... Setting up libpcre2-posix2:i386 (10.36-2) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libdivsufsort3:i386 (2.0.1-5) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libdivsufsort-dev:i386 (2.0.1-5) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libblkid-dev:i386 (2.36.1-7) ... Setting up gettext (0.21-4) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libpcre2-dev:i386 (10.36-2) ... Setting up libtool (2.4.6-15) ... Setting up libselinux1-dev:i386 (3.1-3) ... Setting up libpcre3-dev:i386 (2:8.39-13) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libglib2.0-bin (2.66.8-1) ... Setting up m4 (1.4.18-5) ... Setting up pkgconf (1.7.4~git20210206+dcf529b-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libmount-dev:i386 (2.36.1-7) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up libglib2.0-dev-bin (2.66.8-1) ... Setting up libglib2.0-dev:i386 (2.66.8-1) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/andi-0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.13-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Fabian Klötzl dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/andi-0.13' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking divsufsort.h usability... yes checking divsufsort.h presence... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking whether g++ supports C++11 features by default... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/andi-0.13' dh_auto_build make -j18 make[1]: Entering directory '/build/andi-0.13' Making all in . make[2]: Entering directory '/build/andi-0.13' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/andi-0.13' Making all in libs make[2]: Entering directory '/build/andi-0.13/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpfasta.a make[2]: Leaving directory '/build/andi-0.13/libs' Making all in opt make[2]: Entering directory '/build/andi-0.13/opt' rm -f libcompat.a ar cru libcompat.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a make[2]: Leaving directory '/build/andi-0.13/opt' Making all in src make[2]: Entering directory '/build/andi-0.13/src' make all-am make[3]: Entering directory '/build/andi-0.13/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:30: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/andi-0.13/src' make[2]: Leaving directory '/build/andi-0.13/src' Making all in docs make[2]: Entering directory '/build/andi-0.13/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/andi-0.13/docs' Making all in test make[2]: Entering directory '/build/andi-0.13/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:114:30: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic | test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -fdebug-prefix-map=/build/andi-0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/andi-0.13/test' make[1]: Leaving directory '/build/andi-0.13' dh_auto_test make -j18 check VERBOSE=1 make[1]: Entering directory '/build/andi-0.13' Making check in . make[2]: Entering directory '/build/andi-0.13' make check-TESTS make[3]: Entering directory '/build/andi-0.13' make[4]: Entering directory '/build/andi-0.13' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.13 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/andi-0.13' make[3]: Leaving directory '/build/andi-0.13' make[2]: Leaving directory '/build/andi-0.13' Making check in libs make[2]: Entering directory '/build/andi-0.13/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.13/libs' Making check in opt make[2]: Entering directory '/build/andi-0.13/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.13/opt' Making check in src make[2]: Entering directory '/build/andi-0.13/src' make[2]: Leaving directory '/build/andi-0.13/src' Making check in docs make[2]: Entering directory '/build/andi-0.13/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.13/docs' Making check in test make[2]: Entering directory '/build/andi-0.13/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/andi-0.13/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/andi-0.13/test' make[2]: Leaving directory '/build/andi-0.13/test' make[1]: Leaving directory '/build/andi-0.13' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j18 install DESTDIR=/build/andi-0.13/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/andi-0.13' Making install in . make[2]: Entering directory '/build/andi-0.13' make[3]: Entering directory '/build/andi-0.13' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/andi-0.13/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/andi-0.13/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/andi-0.13' make[2]: Leaving directory '/build/andi-0.13' Making install in libs make[2]: Entering directory '/build/andi-0.13/libs' make[3]: Entering directory '/build/andi-0.13/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.13/libs' make[2]: Leaving directory '/build/andi-0.13/libs' Making install in opt make[2]: Entering directory '/build/andi-0.13/opt' make[3]: Entering directory '/build/andi-0.13/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.13/opt' make[2]: Leaving directory '/build/andi-0.13/opt' Making install in src make[2]: Entering directory '/build/andi-0.13/src' make[3]: Entering directory '/build/andi-0.13/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/andi-0.13/debian/andi/usr/bin' /usr/bin/install -c andi '/build/andi-0.13/debian/andi/usr/bin' make[3]: Leaving directory '/build/andi-0.13/src' make[2]: Leaving directory '/build/andi-0.13/src' Making install in docs make[2]: Entering directory '/build/andi-0.13/docs' make[3]: Entering directory '/build/andi-0.13/docs' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/andi-0.13/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/andi-0.13/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/andi-0.13/docs' make[2]: Leaving directory '/build/andi-0.13/docs' Making install in test make[2]: Entering directory '/build/andi-0.13/test' make[3]: Entering directory '/build/andi-0.13/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.13/test' make[2]: Leaving directory '/build/andi-0.13/test' make[1]: Leaving directory '/build/andi-0.13' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.13-3_i386.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.13-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../andi_0.13-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21790 and its subdirectories I: Current time: Fri Jul 22 06:51:31 -12 2022 I: pbuilder-time-stamp: 1658515891 Sat Jun 19 12:28:34 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Sat Jun 19 12:28:34 UTC 2021 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Sat Jun 19 12:32:44 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. Sat Jun 19 12:32:44 UTC 2021 I: andi_0.13-3_i386.changes: Format: 1.8 Date: Mon, 06 Apr 2020 09:14:39 +0200 Source: andi Binary: andi andi-dbgsym Architecture: i386 Version: 0.13-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Fabian Klötzl Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.13-3) unstable; urgency=medium . * Add build-essential as autopkgtests dependency Checksums-Sha1: 04e2b9af90254f87618f935d01323d1777d8a870 46212 andi-dbgsym_0.13-3_i386.deb 90b7064176e74bd9924c9e259357fdd2b9b6f683 6110 andi_0.13-3_i386.buildinfo 0f156802c53787d6a9369ea90a28150c418f8b70 465748 andi_0.13-3_i386.deb Checksums-Sha256: cca9beb615eed1abb771b4e43d97b31220e872efadba74762323edac388253e4 46212 andi-dbgsym_0.13-3_i386.deb 5482e036854b884f15f13d8af6b476d863b136eb0770f93799ad4e1855654cf6 6110 andi_0.13-3_i386.buildinfo e29ba34580df337e69529a4412c235868bb8d8402fdb48986e1cb2e01ebca959 465748 andi_0.13-3_i386.deb Files: 8ae768bd0a2c6b8dff30efa44a3af5b5 46212 debug optional andi-dbgsym_0.13-3_i386.deb 58d935633b5392ed7f98412ae079c6ad 6110 science optional andi_0.13-3_i386.buildinfo 6fb92ca94e1b3fe61ac1044f733b8c25 465748 science optional andi_0.13-3_i386.deb Sat Jun 19 12:32:47 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.fl4OPqjWIO/andi_0.13-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.fl4OPqjWIO/andi_0.13-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.fl4OPqjWIO/andi_0.13-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.fl4OPqjWIO/b1/andi_0.13-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.fl4OPqjWIO/b2/andi_0.13-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.911s) 0.911s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.037s) 0.036s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jun 19 12:32:49 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Sat Jun 19 12:32:49 UTC 2021 I: andi from bullseye built successfully and reproducibly on i386. Sat Jun 19 12:32:50 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jun 19 12:32:50 UTC 2021 I: Submitting 8.0K b1/andi_0.13-3_i386.buildinfo.asc Sat Jun 19 12:32:51 UTC 2021 I: Submitting 8.0K b2/andi_0.13-3_i386.buildinfo.asc Sat Jun 19 12:32:52 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 19 12:32:52 UTC 2021 I: Done submitting .buildinfo files. Sat Jun 19 12:32:52 UTC 2021 I: Removing signed andi_0.13-3_i386.buildinfo.asc files: removed './b1/andi_0.13-3_i386.buildinfo.asc' removed './b2/andi_0.13-3_i386.buildinfo.asc'