Mon Jul 5 13:37:25 UTC 2021 I: starting to build biosquid/bullseye/i386 on jenkins on '2021-07-05 13:37' Mon Jul 5 13:37:25 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/13110/console.log Mon Jul 5 13:37:25 UTC 2021 I: Downloading source for bullseye/biosquid=1.9g+cvs20050121-12 --2021-07-05 13:37:25-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/biosquid/biosquid_1.9g+cvs20050121-12.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2195 (2.1K) Saving to: ‘biosquid_1.9g+cvs20050121-12.dsc’ 0K .. 100% 151M=0s 2021-07-05 13:37:25 (151 MB/s) - ‘biosquid_1.9g+cvs20050121-12.dsc’ saved [2195/2195] Mon Jul 5 13:37:25 UTC 2021 I: biosquid_1.9g+cvs20050121-12.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: biosquid Binary: biosquid, libsquid1, libsquid-dev Architecture: any Version: 1.9g+cvs20050121-12 Maintainer: Debian-Med Packaging Team Uploaders: Andreas Tille Homepage: http://eddylab.org/software.html Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/biosquid Vcs-Git: https://salsa.debian.org/med-team/biosquid.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs Package-List: biosquid deb science optional arch=any libsquid-dev deb libdevel optional arch=any libsquid1 deb libs optional arch=any Checksums-Sha1: 5ff847263f38a26e8cf4e2fba0414c5fdb8c6732 304060 biosquid_1.9g+cvs20050121.orig.tar.gz 5d65cbd79d4bfc3563df3b8d1d2c6a5e42edbd30 14340 biosquid_1.9g+cvs20050121-12.debian.tar.xz Checksums-Sha256: b6b752bcea5ec6468b52096cdde0e792b7f5ed5fb3f477ec7ac233c54646f925 304060 biosquid_1.9g+cvs20050121.orig.tar.gz af677b3a382366e3de17fd5bbe844015f6ec6df9b851d91c78bab27588fea3fd 14340 biosquid_1.9g+cvs20050121-12.debian.tar.xz Files: 75ca6e693bedb18086b9e5911f3c047a 304060 biosquid_1.9g+cvs20050121.orig.tar.gz 4da7cb77db8cf8609c141e3c7e02a84f 14340 biosquid_1.9g+cvs20050121-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl81LioRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGbNw/+PwIdrs9uG16/UdtQkBDW9R76q6yqKV9J Fwyj7bgioT6b+cooyKEFiomC/XHmbQ/rTpRwF+j1owx+hIIc8Yc9osDOsdZcXvwy 3PozpNhQQdOmBTgR4v3gVIra5rxZe998X6V7vGUiV+2r1Zw8zQlCZMj2iBSljW2g AocegXF9Lk2Et/mKdeOguJaccjcohhPGt4pwXhBM4/d/3SY8KCDjPh0Aj4aCkFog sqSHCiaeFj7JU0tKqFM4cksQN75NAgGTmRV9Zs1B4HTASUFtc2bJtdt25fiMvFLA kmOO8OID2i5Nw46dC1PL39qIalLlS/JC7WInCyel8ouqDC5Y0xvYGX2w9StafEUm 7+Ds5Gds38yMRqLWV1jDM9v/GU/qLIomM0y+/mnvv+x2OPAKwGB39vzrHAq68+Xy cQnhGNu2F8IKmJgv/upb/6S9Lhe5zLebPluFBAx1wkGDJkbZWoEVcPwIhFBoZEq9 ZbLt0mZ9G0gOdKk2V18goq7gMWn+gA0K5DIwbbQIzkyEYGc2z1DeenbXwYG3yHGA Mq8or5NJI0GPtuldaMP9TstfC4+Y3CSpk/NQnX2nFigA7lcAiiRLCRzKmgh648yX X3pb5v2i8qrbZ9XLhZizwtcgRkU1Y+6xpxGKk4HtZ0ZGjRnhsNsNUbGgI4H43SLc D1BVoEAIW9Q= =Cxma -----END PGP SIGNATURE----- Mon Jul 5 13:37:25 UTC 2021 I: Checking whether the package is not for us Mon Jul 5 13:37:25 UTC 2021 I: Starting 1st build on remote node ionos6-i386.debian.net. Mon Jul 5 13:37:25 UTC 2021 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Mon Jul 5 13:37:58 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 7 08:00:27 -12 2022 I: pbuilder-time-stamp: 1659902427 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [biosquid_1.9g+cvs20050121-12.dsc] I: copying [./biosquid_1.9g+cvs20050121.orig.tar.gz] I: copying [./biosquid_1.9g+cvs20050121-12.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.waNNadCH/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 13 00:12:26 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biosquid_1.9g+cvs20050121-12.dsc dpkg-source: info: extracting biosquid in biosquid-1.9g+cvs20050121 dpkg-source: info: unpacking biosquid_1.9g+cvs20050121.orig.tar.gz dpkg-source: info: unpacking biosquid_1.9g+cvs20050121-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying afetch.man.patch dpkg-source: info: applying alistat.man.patch dpkg-source: info: applying compstruct.man.patch dpkg-source: info: applying Makefile.in.patch dpkg-source: info: applying seqstat.man.patch dpkg-source: info: applying sfetch.man.patch dpkg-source: info: applying shuffle.man.patch dpkg-source: info: applying sindex.man.patch dpkg-source: info: applying sreformat.man.patch dpkg-source: info: applying getopt-segmentation-fault.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying perl-testsuite-inc.patch dpkg-source: info: applying automake.patch dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/57159/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='468da6d2c4a34e3fbef4b16104cd2fcb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='57159' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.kRPFHNlrrQ/pbuilderrc_m76d --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.kRPFHNlrrQ/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-12.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Jun 21 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 7 03:48 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/57159/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 67.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 d-shlibs all 0.98 [17.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Fetched 18.6 MB in 0s (79.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../10-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.98_all.deb ... Unpacking d-shlibs (0.98) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../24-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../26-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../27-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up d-shlibs (0.98) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' dh_auto_clean install -d /build/biosquid-1.9g\+cvs20050121/debian/.debhelper/generated/_source/home rm -f configure make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/biosquid.substvars debian/libsquid1.substvars debian/libsquid-dev.substvars debian/files rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1/ debian/libsquid-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:75: installing './compile' configure.ac:77: installing './config.guess' configure.ac:40: installing './missing' Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' # autoreconf && true autoconf dh_auto_configure -- --enable-lfs # --enable-pvm install -d /build/biosquid-1.9g\+cvs20050121/debian/.debhelper/generated/_source/home ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ar... /usr/bin/ar checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 4 checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking size of off_t... 4 checking size of off64_t... 0 checking size of fpos_t... 12 configure: configured for optional LFS, large file support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_auto_build make -j18 make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o afetch_main.o afetch_main.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sqio.lo `test -f 'sqio.c' || echo './'`sqio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-squidcore.lo `test -f 'squidcore.c' || echo './'`squidcore.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_ctype.lo `test -f 'sre_ctype.c' || echo './'`sre_ctype.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_random.lo `test -f 'sre_random.c' || echo './'`sre_random.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_string.lo `test -f 'sre_string.c' || echo './'`sre_string.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-ssi.lo `test -f 'ssi.c' || echo './'`ssi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -o libsquid_la-file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-stockholm.lo `test -f 'stockholm.c' || echo './'`stockholm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-types.lo `test -f 'types.c' || echo './'`types.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-vectorops.lo `test -f 'vectorops.c' || echo './'`vectorops.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-aligneval.lo `test -f 'aligneval.c' || echo './'`aligneval.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-revcomp.lo `test -f 'revcomp.c' || echo './'`revcomp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -o libsquid_la-types.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-seqencode.lo `test -f 'seqencode.c' || echo './'`seqencode.c In file included from /usr/include/string.h:495, from dirichlet.c:14: In function 'strcpy', inlined from 'AllocDirichlet' at dirichlet.c:375:3: /usr/include/i386-linux-gnu/bits/string_fortified.h:90:10: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 90 | return __builtin___strcpy_chk (__dest, __src, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dirichlet.c: In function 'AllocDirichlet': dirichlet.c:374:17: note: at offset 0 to an object allocated by 'malloc' here 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-shuffle.lo `test -f 'shuffle.c' || echo './'`shuffle.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -o libsquid_la-msa.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alistat_main.o alistat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.o aligneval.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.o cluster.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_math.o sre_math.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_stack.o sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compalign_main.o compalign_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compstruct_main.o compstruct_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o wuss.o wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp_main.o revcomp_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp.o revcomp.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqsplit_main.o seqsplit_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqstat_main.o seqstat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sfetch_main.o sfetch_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle_main.o shuffle_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sindex_main.o sindex_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sreformat_main.o sreformat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eps.o eps.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate_main.o translate_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight_main.o weight_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight.o weight.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/i386-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* ln -s .libs/libsquid.a dh_auto_test make -j18 check VERBOSE=1 make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' (cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security") make[3]: Entering directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c sqdconfig_main.c gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o sqdconfig sqdconfig_main.o -lsquid -lm gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c iospeed_main.c gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o iospeed iospeed_main.o -lsquid -lm /usr/bin/ld: iospeed_main.o: in function `main': ./Testsuite/iospeed_main.c:28: warning: the use of `tmpnam' is dangerous, better use `mkstemp' gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c rndspeed_main.c gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o rndspeed rndspeed_main.o -lsquid -lm make[3]: Leaving directory '/build/biosquid-1.9g+cvs20050121/Testsuite' (cd Testsuite; make check) make[3]: Entering directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. fgets(): 0.12u 0.00s 00:00:00.11 Elapsed: 00:00:00 sre_fgets(): 0.12u 0.02s 00:00:00.13 Elapsed: 00:00:01 ReadSeq(): 0.34u 0.00s 00:00:00.34 Elapsed: 00:00:00 iospeed: ok rand(): 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00 sre_random(): 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00 rndspeed: ok x-base-afetch basic tests of afetch ... ok. x-base-alistat basic tests of alistat ... ok. x-base-seqstat basic tests of seqstat ... ok. x-base-sfetch basic tests of sfetch ... ok. x-base-shuffle basic tests of shuffle ... ok. x-base-sindex basic tests of sindex ... ok. x-base-sreformat basic tests of sreformat ... ok. bug-1-sfetch-path sfetch/SSI path bug ... ok. make[3]: Leaving directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -fr -- /tmp/dh-xdg-rundir-rv1mwbF6 cd Testsuite && make clean make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121/Testsuite' rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1.substvars debian/libsquid-dev.substvars rm -fr -- debian/.debhelper/generated/biosquid/ debian/biosquid/ debian/tmp/ debian/.debhelper/generated/libsquid1/ debian/libsquid1/ debian/.debhelper/generated/libsquid-dev/ debian/libsquid-dev/ dh_auto_install install -d /build/biosquid-1.9g\+cvs20050121/debian/tmp make -j1 install DESTDIR=/build/biosquid-1.9g\+cvs20050121/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) libtool: install: /usr/bin/install -c .libs/libsquid.lai /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.la libtool: install: /usr/bin/install -c .libs/libsquid.a /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.a libtool: install: chmod 644 /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.a libtool: install: ranlib /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/alistat /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/alistat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/compalign /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compalign libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/compstruct /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compstruct libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/revcomp /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/revcomp libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqsplit /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqsplit libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqstat /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqstat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/sfetch /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sfetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/shuffle /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/shuffle libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/sindex /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sindex libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/sreformat /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sreformat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/translate /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/weight /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/weight /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/install -c -m 644 dirichlet.h rk.h sqfuncs.h gki.h msa.h sre_random.h sre_stack.h ssi.h stopwatch.h vectorops.h '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsquid.pc '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' mv /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/stranslate dh_install install -d debian/biosquid/usr cp --reflink=auto -a debian/tmp/usr/bin debian/biosquid/usr/ install -d debian/.debhelper/generated/biosquid install -d debian/.debhelper/generated/libsquid1 install -d debian/.debhelper/generated/libsquid-dev d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev squid.h usr/include/biosquid \ --movedev squidconf.h usr/include/biosquid \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/i386-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libsquid.so Library package automatic movement utility set -e install -d -m 755 debian/libsquid-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libsquid1/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libsquid.a debian/libsquid-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libsquid.so debian/libsquid-dev/usr/lib/i386-linux-gnu mv /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.so.1 debian/libsquid1/usr/lib/i386-linux-gnu mv /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 debian/libsquid1/usr/lib/i386-linux-gnu PKGDEV=libsquid-dev PKGSHL=libsquid1 install -d -m 755 debian/libsquid-dev/usr/include mv debian/tmp/usr/include/biosquid debian/libsquid-dev/usr/include install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squid.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squidconf.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/lib/i386-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsquid-dev/usr/lib/i386-linux-gnu/pkgconfig find debian -name "lib*.la" -delete # resolve @LICENSE@ by text in header files for HEADER in /build/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/include/biosquid/*.h ; do \ if grep -q '@LICENSE@' ${HEADER} ; then \ sed '/@LICENSE@/,$d' ${HEADER} > ${HEADER}_tmp ; \ sed 's/^/ * /' Licenses/gnu >> ${HEADER}_tmp ; \ sed '0,/@LICENSE@/d' ${HEADER} >> ${HEADER}_tmp ; \ mv ${HEADER}_tmp ${HEADER} ; \ fi ; \ done make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_installdocs install -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/biosquid.README.Debian debian/biosquid/usr/share/doc/biosquid/README.Debian install -p -m0644 debian/copyright debian/biosquid/usr/share/doc/biosquid/copyright install -d debian/libsquid1/usr/share/doc/libsquid1 install -p -m0644 debian/copyright debian/libsquid1/usr/share/doc/libsquid1/copyright install -d debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/README.test debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/tests/run-unit-test debian/libsquid-dev/usr/share/doc/libsquid-dev chmod -R u\+rw,go=rX debian/libsquid-dev/usr/share/doc install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/biosquid/usr/share/doc/biosquid/changelog.Debian install -p -m0644 debian/changelog debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian install -p -m0644 debian/changelog debian/libsquid1/usr/share/doc/libsquid1/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' dh_installexamples install -d debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean /bin/sh: 1: cd: can't cd to /build/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "libsquid.la" || rm -f libsquid.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /build/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/share/doc/libsquid-dev/examples/Formats/*.pl make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' dh_installman install -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/compalign.1 debian/biosquid/usr/share/man/man1/compalign.1 install -p -m0644 ./debian/revcomp.1 debian/biosquid/usr/share/man/man1/revcomp.1 install -p -m0644 ./debian/seqsplit.1 debian/biosquid/usr/share/man/man1/seqsplit.1 install -p -m0644 ./debian/stranslate.1 debian/biosquid/usr/share/man/man1/stranslate.1 install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/revcomp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_perl dh_link rm -f debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1 ln -s libsquid.so.1.0.0 debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1 rm -f debian/libsquid-dev/usr/lib/i386-linux-gnu/libsquid.so ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/i386-linux-gnu/libsquid.so dh_strip_nondeterminism dh_compress cd debian/biosquid cd debian/libsquid1 cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid1/changelog.Debian chmod a-x usr/share/doc/libsquid-dev/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid1/changelog.Debian gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian cd '/build/biosquid-1.9g+cvs20050121' cd '/build/biosquid-1.9g+cvs20050121' cd '/build/biosquid-1.9g+cvs20050121' dh_fixperms find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid1/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -d debian/biosquid/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/biosquid/usr/lib/debug/.dwz/i386-linux-gnu/biosquid.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/biosquid.debug -- debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight objcopy --compress-debug-sections debian/biosquid/usr/lib/debug/.dwz/i386-linux-gnu/biosquid.debug dwz -- debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/i386-linux-gnu/libsquid.a install -d debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/09/5aced2734fb7145f8ae7503e0fa6b9fe7ba086.debug install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b4 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b4/06fe7c610276dd8729aafbd69a42649243b723.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b4/06fe7c610276dd8729aafbd69a42649243b723.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b4/06fe7c610276dd8729aafbd69a42649243b723.debug debian/biosquid/usr/bin/stranslate install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/03/aa172e5ffee1ebdf0d01c43ade83c9373b52e2.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/03/aa172e5ffee1ebdf0d01c43ade83c9373b52e2.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/03/aa172e5ffee1ebdf0d01c43ade83c9373b52e2.debug debian/biosquid/usr/bin/seqstat install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/88/34c9059c7101ed844566501cd4dcd3d622a1b0.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/88/34c9059c7101ed844566501cd4dcd3d622a1b0.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/88/34c9059c7101ed844566501cd4dcd3d622a1b0.debug debian/biosquid/usr/bin/shuffle install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/33/e004a834c73e695b32375e252225c5724ca130.debug chmod 0644 -- debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/09/5aced2734fb7145f8ae7503e0fa6b9fe7ba086.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/33/e004a834c73e695b32375e252225c5724ca130.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/09/5aced2734fb7145f8ae7503e0fa6b9fe7ba086.debug debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/33/e004a834c73e695b32375e252225c5724ca130.debug debian/biosquid/usr/bin/compalign install -d debian/.debhelper/libsquid1/dbgsym-root/usr/share/doc ln -s libsquid1 debian/.debhelper/libsquid1/dbgsym-root/usr/share/doc/libsquid1-dbgsym install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/14 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/14/9e46e03acf08f2c2d107bbc6f100c5b9aed305.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/14/9e46e03acf08f2c2d107bbc6f100c5b9aed305.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/14/9e46e03acf08f2c2d107bbc6f100c5b9aed305.debug debian/biosquid/usr/bin/afetch install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1f/0eaf72c65e24e286b53a555c9d1edfcea5c2c6.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1f/0eaf72c65e24e286b53a555c9d1edfcea5c2c6.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/1f/0eaf72c65e24e286b53a555c9d1edfcea5c2c6.debug debian/biosquid/usr/bin/revcomp install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd/c43cb373bddb14e13b5692a2f02e665e425c2c.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd/c43cb373bddb14e13b5692a2f02e665e425c2c.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/bd/c43cb373bddb14e13b5692a2f02e665e425c2c.debug debian/biosquid/usr/bin/sindex install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/96d62689fe440d4ae6d84ab8123b37a4f6e09f.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/96d62689fe440d4ae6d84ab8123b37a4f6e09f.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/e2/96d62689fe440d4ae6d84ab8123b37a4f6e09f.debug debian/biosquid/usr/bin/sfetch install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0f objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0f/5b09cefffc4b6fbcf6f6d8797b8b547ce263b1.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0f/5b09cefffc4b6fbcf6f6d8797b8b547ce263b1.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0f/5b09cefffc4b6fbcf6f6d8797b8b547ce263b1.debug debian/biosquid/usr/bin/alistat install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/25/89fe7cae53b8a0bef5864dd31805581d734f65.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/25/89fe7cae53b8a0bef5864dd31805581d734f65.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/25/89fe7cae53b8a0bef5864dd31805581d734f65.debug debian/biosquid/usr/bin/sreformat install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/b2cf530002457c1ce9363f1c5170a5a7d8d00c.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/b2cf530002457c1ce9363f1c5170a5a7d8d00c.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f5/b2cf530002457c1ce9363f1c5170a5a7d8d00c.debug debian/biosquid/usr/bin/seqsplit install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0b objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0b/a1832d50415d3b5fb6f0de4104699de3a72b0a.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0b/a1832d50415d3b5fb6f0de4104699de3a72b0a.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0b/a1832d50415d3b5fb6f0de4104699de3a72b0a.debug debian/biosquid/usr/bin/weight install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e/8a98cb3752f493d716b4308aa4147c5f206402.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e/8a98cb3752f493d716b4308aa4147c5f206402.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e/8a98cb3752f493d716b4308aa4147c5f206402.debug debian/biosquid/usr/bin/compstruct install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/biosquid/usr/lib/debug install -d debian/.debhelper/biosquid/dbgsym-root/usr/share/doc ln -s biosquid debian/.debhelper/biosquid/dbgsym-root/usr/share/doc/biosquid-dbgsym dh_makeshlibs -a rm -f debian/biosquid/DEBIAN/shlibs rm -f debian/libsquid1/DEBIAN/shlibs install -d debian/libsquid1/DEBIAN echo "libsquid 1 libsquid1 (>= 1.9g+cvs20050121)" >> debian/libsquid1/DEBIAN/shlibs chmod 0644 -- debian/libsquid1/DEBIAN/shlibs mv debian/.debhelper/generated/libsquid1/triggers.new debian/.debhelper/generated/libsquid1/triggers rm -f debian/libsquid-dev/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libsquid1.substvars debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 install -d debian/biosquid/DEBIAN dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/weight debian/biosquid/usr/bin/compstruct dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1/usr/lib/i386-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -p -m0644 debian/.debhelper/generated/libsquid1/triggers debian/libsquid1/DEBIAN/triggers install -d debian/libsquid-dev/DEBIAN dh_gencontrol echo misc:Depends= >> debian/libsquid-dev.substvars echo misc:Pre-Depends= >> debian/libsquid-dev.substvars dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -Pdebian/libsquid-dev echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=biosquid-dbgsym "-DDepends=biosquid (= \${binary:Version})" "-DDescription=debug symbols for biosquid" "-DBuild-Ids=03aa172e5ffee1ebdf0d01c43ade83c9373b52e2 0ba1832d50415d3b5fb6f0de4104699de3a72b0a 0f5b09cefffc4b6fbcf6f6d8797b8b547ce263b1 149e46e03acf08f2c2d107bbc6f100c5b9aed305 1f0eaf72c65e24e286b53a555c9d1edfcea5c2c6 2589fe7cae53b8a0bef5864dd31805581d734f65 2e8a98cb3752f493d716b4308aa4147c5f206402 33e004a834c73e695b32375e252225c5724ca130 8834c9059c7101ed844566501cd4dcd3d622a1b0 b406fe7c610276dd8729aafbd69a42649243b723 bdc43cb373bddb14e13b5692a2f02e665e425c2c e296d62689fe440d4ae6d84ab8123b37a4f6e09f f5b2cf530002457c1ce9363f1c5170a5a7d8d00c" -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/libsquid1.substvars echo misc:Pre-Depends= >> debian/libsquid1.substvars install -d debian/.debhelper/libsquid1/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1 -ldebian/changelog -Tdebian/libsquid1.substvars -Pdebian/.debhelper/libsquid1/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libsquid1-dbgsym "-DDepends=libsquid1 (= \${binary:Version})" "-DDescription=debug symbols for libsquid1" -DBuild-Ids=095aced2734fb7145f8ae7503e0fa6b9fe7ba086 -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libsquid1/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1 -ldebian/changelog -Tdebian/libsquid1.substvars -Pdebian/libsquid1 chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -Pdebian/biosquid chmod 0644 -- debian/biosquid/DEBIAN/control chmod 0644 -- debian/libsquid1/DEBIAN/control dh_md5sums cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid1 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libsquid1/DEBIAN/md5sums chmod 0644 -- debian/biosquid/DEBIAN/md5sums cd debian/.debhelper/libsquid1/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid1 .. dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-12_i386.deb'. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-12_i386.deb'. dpkg-deb: building package 'libsquid1' in '../libsquid1_1.9g+cvs20050121-12_i386.deb'. dpkg-deb: building package 'libsquid1-dbgsym' in '../libsquid1-dbgsym_1.9g+cvs20050121-12_i386.deb'. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-12_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../biosquid_1.9g+cvs20050121-12_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/57159 and its subdirectories I: Current time: Sun Aug 7 08:00:57 -12 2022 I: pbuilder-time-stamp: 1659902457 Mon Jul 5 13:37:58 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Mon Jul 5 13:37:58 UTC 2021 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Mon Jul 5 13:42:19 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. Mon Jul 5 13:42:20 UTC 2021 I: biosquid_1.9g+cvs20050121-12_i386.changes: Format: 1.8 Date: Thu, 13 Aug 2020 14:02:51 +0200 Source: biosquid Binary: biosquid biosquid-dbgsym libsquid-dev libsquid1 libsquid1-dbgsym Architecture: i386 Version: 1.9g+cvs20050121-12 Distribution: unstable Urgency: medium Maintainer: Debian-Med Packaging Team Changed-By: Andreas Tille Description: biosquid - utilities for biological sequence analysis libsquid-dev - biosquid headers and static library for biological sequence analy libsquid1 - biosquid dynamic library for biological sequence analysis Changes: biosquid (1.9g+cvs20050121-12) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Andreas Tille ] * Disable pvm (see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957717#17 ) * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Refer to specific version of license GPL-2. * Cleanup test dir to avoid arch-dependent-file-in-usr-share Checksums-Sha1: 8eee2eb2b93fc7153db768ae53c6f769ea43b7b8 136080 biosquid-dbgsym_1.9g+cvs20050121-12_i386.deb 1e371741fb3a01dc3b48e9d0f7a53f64874f459d 6278 biosquid_1.9g+cvs20050121-12_i386.buildinfo 3cf0b1db8e43f27f65b535dbf13d6b926e7fcf55 79360 biosquid_1.9g+cvs20050121-12_i386.deb 01686a1f0402127c748c4eff267ef7e682632fb1 152220 libsquid-dev_1.9g+cvs20050121-12_i386.deb 917485fbf358783c8840e079a19c948a83659117 152596 libsquid1-dbgsym_1.9g+cvs20050121-12_i386.deb 82768b9d363464e2934dafe879c9a3642eb6ebb9 81676 libsquid1_1.9g+cvs20050121-12_i386.deb Checksums-Sha256: 985f2f8d64f45eb97bead67788587368dd07d737569ece3fe24e102ebb67bf51 136080 biosquid-dbgsym_1.9g+cvs20050121-12_i386.deb df1a49e1bbbd84c2d4ec6609c8539a7821d1aa1b4c9b05a4177bd95a64377a21 6278 biosquid_1.9g+cvs20050121-12_i386.buildinfo fcae7e7cb802e7c6b9910369735f1aa0760278c10633a68a9f8761eeb2bc0436 79360 biosquid_1.9g+cvs20050121-12_i386.deb 73b60f9520f8810a6366d047fba386c917be4dd1c3cb6801e8d7f22531697e1e 152220 libsquid-dev_1.9g+cvs20050121-12_i386.deb f0f4f0ed01dc75547e8352ce4778e9c1e11982c737876461e9f28062c030b969 152596 libsquid1-dbgsym_1.9g+cvs20050121-12_i386.deb ce63b81516bc99454bcfa951b6d36cba9d398f6951237380e302eace20c05823 81676 libsquid1_1.9g+cvs20050121-12_i386.deb Files: 2b6c6bfc335dd84bc9e47f2df30958fd 136080 debug optional biosquid-dbgsym_1.9g+cvs20050121-12_i386.deb 359739423eae0a5f7fca31b0fc819122 6278 science optional biosquid_1.9g+cvs20050121-12_i386.buildinfo ee294699cd4754642de16c30db76768a 79360 science optional biosquid_1.9g+cvs20050121-12_i386.deb 75e5cdadf1e38e040e659596036bf46b 152220 libdevel optional libsquid-dev_1.9g+cvs20050121-12_i386.deb 939cce1d215d679216d3fcb1e3014a68 152596 debug optional libsquid1-dbgsym_1.9g+cvs20050121-12_i386.deb 7456b30138d22d35bf7a28335d80f992 81676 libs optional libsquid1_1.9g+cvs20050121-12_i386.deb Mon Jul 5 13:42:21 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.kRPFHNlrrQ/biosquid_1.9g+cvs20050121-12.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.kRPFHNlrrQ/biosquid_1.9g+cvs20050121-12.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.kRPFHNlrrQ/biosquid_1.9g+cvs20050121-12.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.kRPFHNlrrQ/b1/biosquid_1.9g+cvs20050121-12_i386.changes /srv/reproducible-results/rbuild-debian/tmp.kRPFHNlrrQ/b2/biosquid_1.9g+cvs20050121-12_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.308s) 0.308s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.029s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jul 5 13:42:23 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 5 13:42:23 UTC 2021 I: biosquid from bullseye built successfully and reproducibly on i386. Mon Jul 5 13:42:25 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jul 5 13:42:25 UTC 2021 I: Submitting 8.0K b1/biosquid_1.9g+cvs20050121-12_i386.buildinfo.asc Mon Jul 5 13:42:26 UTC 2021 I: Submitting 8.0K b2/biosquid_1.9g+cvs20050121-12_i386.buildinfo.asc Mon Jul 5 13:42:27 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jul 5 13:42:27 UTC 2021 I: Done submitting .buildinfo files. Mon Jul 5 13:42:27 UTC 2021 I: Removing signed biosquid_1.9g+cvs20050121-12_i386.buildinfo.asc files: removed './b1/biosquid_1.9g+cvs20050121-12_i386.buildinfo.asc' removed './b2/biosquid_1.9g+cvs20050121-12_i386.buildinfo.asc'