Fri Jun 25 12:50:25 UTC 2021 I: starting to build clustalx/bullseye/i386 on jenkins on '2021-06-25 12:50' Fri Jun 25 12:50:25 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/14722/console.log Fri Jun 25 12:50:25 UTC 2021 I: Downloading source for bullseye/clustalx=2.1+lgpl-9 --2021-06-25 12:50:25-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/clustalx/clustalx_2.1+lgpl-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2084 (2.0K) Saving to: ‘clustalx_2.1+lgpl-9.dsc’ 0K .. 100% 283M=0s 2021-06-25 12:50:25 (283 MB/s) - ‘clustalx_2.1+lgpl-9.dsc’ saved [2084/2084] Fri Jun 25 12:50:25 UTC 2021 I: clustalx_2.1+lgpl-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: clustalx Binary: clustalx Architecture: any Version: 2.1+lgpl-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.clustal.org/clustal2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/clustalx Vcs-Git: https://salsa.debian.org/med-team/clustalx.git Build-Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Package-List: clustalx deb science optional arch=any Checksums-Sha1: 63196a4e113a22e5e575f223d76b7406f4f70795 341649 clustalx_2.1+lgpl.orig.tar.gz b7b02b1250b121b5162e6aa0e43a931c1518401e 15224 clustalx_2.1+lgpl-9.debian.tar.xz Checksums-Sha256: e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 341649 clustalx_2.1+lgpl.orig.tar.gz a72891b756770c26939b8dc96afd800dd2156057a47caa5f4085b53d362e8011 15224 clustalx_2.1+lgpl-9.debian.tar.xz Files: 5b1f2f1cc8e939411ab0f934cafa072a 341649 clustalx_2.1+lgpl.orig.tar.gz 6a04d1877358fa582cf4897c5296c45c 15224 clustalx_2.1+lgpl-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/KtjoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHcRg/8DE5lfxYDBGiO+4AQDpadrU1LFY+oeF8K 8FMaXTtrHFs3XOzd6Hph9Xv52WksJe5rDy9235r19UVhCrvCnq3VmcqTFgus/fCQ ZjPaxMDpllLS5vJIRqySjE8mJpW7i1nFnbv7WEfTF1pUfzdS1QHOnMTVLPfJE7P0 V2z6/5cF+apO/ifBubKGcjtpX35JtppnwOfWZ2tYG6RbXjag0ZyKsx+joZtmzu8E MnF/lLqNdIXccon5v8nndh961W3VLDAdn4hQy5emD135zF3ggqgRrGnknXnVVZZA o3JL8W7HHkDpgYBMDWNBrhlEvg0C6XweQS58gBxOs6+/hRTrxnBLXOc9+6780Bax jlp0o1h9qUD60fNYqjJnmuyVR3bBkfxZVYxIkNp1qslrxK4CaPN7yYIIg1g9bIt6 4jlgj2WGgvDF1PbZ1GwqqOqDiJbdhtKmUV2dD3R+5hde4Sl4msuK2ydtb7yVkvnm dD3GOhuipZSCJl4J/LW0IeVZ2535nUkJda2sW19tfWGB7+WajkeD4ZXnCw+xRoL3 cjU67dhnc97DXyDOcjFHdcduZH/jOTgDNxqL5zAV/oHHiewPg9Ey3gnX1/QSXfPc iNz2XPyn+vbU3vJW1t9zwKdyc+M5+upY9wXNgc7tWhMwFeaD0wT+3ekh4Xsa0Ukm WzSDicww5io= =5xFa -----END PGP SIGNATURE----- Fri Jun 25 12:50:25 UTC 2021 I: Checking whether the package is not for us Fri Jun 25 12:50:25 UTC 2021 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Jun 25 12:50:25 UTC 2021 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Jun 25 12:56:57 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Fri Jun 25 00:50:28 -12 2021 I: pbuilder-time-stamp: 1624625428 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [clustalx_2.1+lgpl-9.dsc] I: copying [./clustalx_2.1+lgpl.orig.tar.gz] I: copying [./clustalx_2.1+lgpl-9.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.19IdXkbZ/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 4 10:20:42 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-9.dsc dpkg-source: info: extracting clustalx in clustalx-2.1+lgpl dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6629/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='32b6dd0b7dbe4f16baa0c620d7db4f07' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6629' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.BZhxVoBwgA/pbuilderrc_GEY9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.BZhxVoBwgA/b1 --logfile b1/build.log clustalx_2.1+lgpl-9.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-1 (2021-06-10) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 23 21:28 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/6629/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev-tools; however: Package qtbase5-dev-tools is not installed. pbuilder-satisfydepends-dummy depends on qttools5-dev-tools; however: Package qttools5-dev-tools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} iso-codes{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcap2{a} libcap2-bin{a} libclang1-11{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdw1{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgstreamer-plugins-base1.0-0{a} libgstreamer1.0-0{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhyphen0{a} libice6{a} libicu67{a} libinput-bin{a} libinput10{a} libjpeg62-turbo{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmd4c0{a} libmtdev1{a} liborc-0.4-0{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpng16-16{a} libpthread-stubs0-dev{a} libqt5concurrent5{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5designercomponents5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5positioning5{a} libqt5printsupport5{a} libqt5qml5{a} libqt5qmlmodels5{a} libqt5quick5{a} libqt5quickwidgets5{a} libqt5sensors5{a} libqt5sql5{a} libqt5sql5-sqlite{a} libqt5test5{a} libqt5webchannel5{a} libqt5webkit5{a} libqt5widgets5{a} libqt5xml5{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libunwind8{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} qdoc-qt5{a} qhelpgenerator-qt5{a} qt5-assistant{a} qt5-qmake{a} qt5-qmake-bin{a} qtattributionsscanner-qt5{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} qttools5-dev-tools{a} sensible-utils{a} shared-mime-info{a} ucf{a} x11-common{a} x11proto-dev{a} x11proto-xext-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus geoclue-2.0 gstreamer1.0-plugins-base libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libpam-cap libqt5opengl5-dev libqt5svg5 libwacom-bin lynx mesa-vulkan-drivers qt5-gtk-platformtheme qttranslations5-l10n wget xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 124 MB of archives. After unpacking 478 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libcap2 i386 1:2.44-1 [24.5 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 libdw1 i386 0.183-1 [269 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 libunwind8 i386 1.3.2-2 [53.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libcap2-bin i386 1:2.44-1 [33.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libgstreamer1.0-0 i386 1.18.4-2 [2254 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 liborc-0.4-0 i386 1:0.4.32-1 [207 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 iso-codes all 4.6.0-1 [2824 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libgstreamer-plugins-base1.0-0 i386 1.18.4-2 [2178 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libhyphen0 i386 2.8.8-7 [32.3 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 shared-mime-info i386 2.0-1 [703 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libdouble-conversion3 i386 3.1.5-6.1 [44.8 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libpcre2-16-0 i386 10.36-2 [231 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libqt5core5a i386 5.15.2+dfsg-7 [2539 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 fontconfig i386 2.13.1-4.2 [417 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libdrm-common all 2.4.104-1 [14.9 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libdrm2 i386 2.4.104-1 [44.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libglvnd0 i386 1.3.2-1 [44.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libwayland-server0 i386 1.18.0-2~exp1.1 [36.0 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libgbm1 i386 20.3.4-1 [74.7 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libglapi-mesa i386 20.3.4-1 [71.6 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libwayland-client0 i386 1.18.0-2~exp1.1 [27.7 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.1-1 [310 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.1-1 [796 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libx11-xcb1 i386 2:1.7.1-1 [203 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libxcb-dri2-0 i386 1.14-3 [103 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libxcb-dri3-0 i386 1.14-3 [103 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libxcb-present0 i386 1.14-3 [101 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libxcb-sync1 i386 1.14-3 [105 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libxcb-xfixes0 i386 1.14-3 [105 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 55 http://deb.debian.org/debian bullseye/main i386 libegl-mesa0 i386 20.3.4-1 [148 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libegl1 i386 1.3.2-1 [36.7 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libxcb-glx0 i386 1.14-3 [120 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libxdamage1 i386 1:1.1.5-2 [15.9 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libxfixes3 i386 1:5.0.3-2 [22.6 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libdrm-amdgpu1 i386 2.4.104-1 [31.5 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libdrm-intel1 i386 2.4.104-1 [74.5 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libdrm-nouveau2 i386 2.4.104-1 [28.5 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libdrm-radeon1 i386 2.4.104-1 [31.4 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libz3-4 i386 4.8.10-1 [7737 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libllvm11 i386 1:11.0.1-2 [17.7 MB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libsensors5 i386 1:3.6.0-7 [53.2 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libvulkan1 i386 1.2.162.0-1 [110 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libgl1-mesa-dri i386 20.3.4-1 [9945 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libglx-mesa0 i386 20.3.4-1 [195 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libglx0 i386 1.3.2-1 [39.1 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 libgl1 i386 1.3.2-1 [83.6 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libevdev2 i386 1.11.0+dfsg-1 [32.4 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libmtdev1 i386 1.1.6-1 [23.5 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libgudev-1.0-0 i386 234-1 [15.2 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libwacom-common all 1.8-2 [49.7 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libwacom2 i386 1.8-2 [23.0 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libinput-bin i386 1.16.4-3 [23.6 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libinput10 i386 1.16.4-3 [131 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libmd4c0 i386 0.4.7-2 [44.3 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libdbus-1-3 i386 1.12.20-2 [232 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libqt5dbus5 i386 5.15.2+dfsg-7 [254 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libqt5network5 i386 5.15.2+dfsg-7 [745 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libxcb-icccm4 i386 0.4.1-1.1 [28.1 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libxcb-util1 i386 0.4.0-1+b1 [23.6 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libxcb-image0 i386 0.4.0-1+b3 [24.8 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libxcb-keysyms1 i386 0.4.0-1+b2 [16.7 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libxcb-randr0 i386 1.14-3 [114 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libxcb-render-util0 i386 0.3.9-1+b1 [18.7 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libxcb-shape0 i386 1.14-3 [102 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libxcb-xinerama0 i386 1.14-3 [101 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libxcb-xinput0 i386 1.14-3 [129 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libxcb-xkb1 i386 1.14-3 [127 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 xkb-data all 2.29-2 [655 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libxkbcommon0 i386 1.0.3-2 [107 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libxkbcommon-x11-0 i386 1.0.3-2 [17.6 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libqt5gui5 i386 5.15.2+dfsg-7 [5796 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libqt5positioning5 i386 5.15.2+dfsg-2 [229 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libavahi-common-data i386 0.8-5 [123 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libavahi-common3 i386 0.8-5 [60.1 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libavahi-client3 i386 0.8-5 [64.3 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libcups2 i386 2.3.3op2-3+deb11u1 [366 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 libqt5widgets5 i386 5.15.2+dfsg-7 [2628 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libqt5printsupport5 i386 5.15.2+dfsg-7 [238 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libqt5qml5 i386 5.15.2+dfsg-6 [1435 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 libqt5qmlmodels5 i386 5.15.2+dfsg-6 [216 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libqt5quick5 i386 5.15.2+dfsg-6 [1705 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libqt5sensors5 i386 5.15.2-2 [120 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 libqt5webchannel5 i386 5.15.2-2 [64.6 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1 [269 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libwoff1 i386 1.0.2-1+b1 [46.2 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libxslt1.1 i386 1.1.34-4 [251 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 libqt5webkit5 i386 5.212.0~alpha4-11 [12.1 MB] Get: 126 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 libclang1-11 i386 1:11.0.1-2 [5429 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 x11proto-dev all 2020.1-1 [594 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 libxau-dev i386 1:1.0.9-1 [23.3 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B] Get: 155 http://deb.debian.org/debian bullseye/main i386 libxcb1-dev i386 1.14-3 [181 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 libx11-dev i386 2:1.7.1-1 [875 kB] Get: 157 http://deb.debian.org/debian bullseye/main i386 libglx-dev i386 1.3.2-1 [16.3 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 libgl-dev i386 1.3.2-1 [100 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 libegl-dev i386 1.3.2-1 [19.5 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 libglu1-mesa i386 9.0.1-1 [178 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 libglu1-mesa-dev i386 9.0.1-1 [223 kB] Get: 162 http://deb.debian.org/debian bullseye/main i386 libqt5concurrent5 i386 5.15.2+dfsg-7 [71.5 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 libqt5xml5 i386 5.15.2+dfsg-7 [161 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 libqt5designer5 i386 5.15.2-5 [2814 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 libqt5designercomponents5 i386 5.15.2-5 [803 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 libqt5sql5 i386 5.15.2+dfsg-7 [156 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 libqt5help5 i386 5.15.2-5 [163 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 libqt5quickwidgets5 i386 5.15.2+dfsg-6 [51.6 kB] Get: 169 http://deb.debian.org/debian bullseye/main i386 libqt5sql5-sqlite i386 5.15.2+dfsg-7 [86.4 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 libqt5test5 i386 5.15.2+dfsg-7 [176 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 libvulkan-dev i386 1.2.162.0-1 [586 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 x11proto-xext-dev all 2020.1-1 [3404 B] Get: 173 http://deb.debian.org/debian bullseye/main i386 libxext-dev i386 2:1.3.3-1.1 [111 kB] Get: 174 http://deb.debian.org/debian bullseye/main i386 qtchooser i386 66-2 [27.8 kB] Get: 175 http://deb.debian.org/debian bullseye/main i386 qdoc-qt5 i386 5.15.2-5 [646 kB] Get: 176 http://deb.debian.org/debian bullseye/main i386 qhelpgenerator-qt5 i386 5.15.2-5 [67.2 kB] Get: 177 http://deb.debian.org/debian bullseye/main i386 qt5-assistant i386 5.15.2-5 [368 kB] Get: 178 http://deb.debian.org/debian bullseye/main i386 qt5-qmake-bin i386 5.15.2+dfsg-7 [1129 kB] Get: 179 http://deb.debian.org/debian bullseye/main i386 qt5-qmake i386 5.15.2+dfsg-7 [249 kB] Get: 180 http://deb.debian.org/debian bullseye/main i386 qtattributionsscanner-qt5 i386 5.15.2-5 [38.6 kB] Get: 181 http://deb.debian.org/debian bullseye/main i386 qtbase5-dev-tools i386 5.15.2+dfsg-7 [846 kB] Get: 182 http://deb.debian.org/debian bullseye/main i386 qtbase5-dev i386 5.15.2+dfsg-7 [1152 kB] Get: 183 http://deb.debian.org/debian bullseye/main i386 qttools5-dev-tools i386 5.15.2-5 [1086 kB] Fetched 124 MB in 20s (6068 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../001-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../003-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../005-libglib2.0-0_2.66.8-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.66.8-1) ... Selecting previously unselected package libcap2:i386. Preparing to unpack .../006-libcap2_1%3a2.44-1_i386.deb ... Unpacking libcap2:i386 (1:2.44-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../007-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package libdw1:i386. Preparing to unpack .../008-libdw1_0.183-1_i386.deb ... Unpacking libdw1:i386 (0.183-1) ... 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Setting up libwacom2:i386 (1.8-2) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libqt5concurrent5:i386 (5.15.2+dfsg-7) ... Setting up libavahi-client3:i386 (0.8-5) ... Setting up libgstreamer1.0-0:i386 (1.18.4-2) ... Setcap worked! gst-ptp-helper is not suid! Setting up libdrm-amdgpu1:i386 (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:i386 (1.14-3) ... Setting up libx11-xcb1:i386 (2:1.7.1-1) ... Setting up libdrm-nouveau2:i386 (2.4.104-1) ... Setting up libxdamage1:i386 (1:1.1.5-2) ... Setting up libxcb1-dev:i386 (1.14-3) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libgbm1:i386 (20.3.4-1) ... Setting up libdrm-radeon1:i386 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up qdoc-qt5 (5.15.2-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libqt5positioning5:i386 (5.15.2+dfsg-2) ... Setting up libdrm-intel1:i386 (2.4.104-1) ... Setting up libgl1-mesa-dri:i386 (20.3.4-1) ... Setting up libx11-dev:i386 (2:1.7.1-1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up libgstreamer-plugins-base1.0-0:i386 (1.18.4-2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libqt5network5:i386 (5.15.2+dfsg-7) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.16.4-3) ... Setting up libqt5sql5:i386 (5.15.2+dfsg-7) ... Setting up dh-autoreconf (20) ... Setting up qtbase5-dev-tools (5.15.2+dfsg-7) ... Setting up libqt5xml5:i386 (5.15.2+dfsg-7) ... Setting up libegl-mesa0:i386 (20.3.4-1) ... Setting up libxfixes3:i386 (1:5.0.3-2) ... Setting up libqt5qml5:i386 (5.15.2+dfsg-6) ... Setting up qtattributionsscanner-qt5 (5.15.2-5) ... Setting up libqt5webchannel5:i386 (5.15.2-2) ... Setting up libxext-dev:i386 (2:1.3.3-1.1) ... Setting up libcups2:i386 (2.3.3op2-3+deb11u1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/clustalx-2.1+lgpl/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/clustalx-2.1+lgpl' rm -f moc_* dh_clean make[1]: Leaving directory '/build/clustalx-2.1+lgpl' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/clustalx-2.1+lgpl' dh_auto_configure qmake -makefile "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /build/clustalx-2.1+lgpl/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/build/clustalx-2.1+lgpl' dh_auto_build make -j10 make[1]: Entering directory '/build/clustalx-2.1+lgpl' g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] 74 | // tr("colorrules not found in the parameter file, using\ | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'QColor ColorParameters::getResidueColor(QChar, QChar)': ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 160 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable 'temp' [-Wunused-variable] 174 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:157:10: warning: unused variable 'showRes' [-Wunused-variable] 157 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable 'showCon' [-Wunused-variable] 158 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function 'int ColorParameters::getResidueColorNum(QChar, QChar)': ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 197 | for(i = 0; i < colorPar.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable 'temp' [-Wunused-variable] 211 | char temp = colorPar[i].consensusConditionList[j].toLatin1(); | ^~~~ ColorParameters.cpp:194:10: warning: unused variable 'showRes' [-Wunused-variable] 194 | char showRes = res.toLatin1(); | ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable 'showCon' [-Wunused-variable] 195 | char showCon = consensus.toLatin1(); | ^~~~~~~ ColorParameters.cpp: In member function 'void ColorParameters::printColorInfo()': ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 229 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'int ColorParameters::getIndexOfColor(QColor)': ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 238 | for(int i = 0; i < colors.size(); i++) | ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function 'QColor ColorParameters::getColorFromNum(int)': ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 251 | if(colorNum > 0 && colorNum - 1 < colorPar.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from AlignOutputFileNames.cpp:16: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function 'virtual void ColumnScoreParams::showEvent(QShowEvent*)': ColumnScoreParams.cpp:51:47: warning: unused parameter 'event' [-Wunused-parameter] 51 | void ColumnScoreParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from BootstrapTreeDialog.cpp:8: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor 'AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)': AlignmentWidget.h:170:10: warning: 'AlignmentWidget::blackAndWhite' will be initialized after [-Wreorder] 170 | bool blackAndWhite; | ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: 'std::vector >* AlignmentWidget::selectedColoredRes' [-Wreorder] 161 | std::vector* selectedColoredRes; | ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] 65 | AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) | ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calculatePixMaps()': AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 225 | for(unsigned int j = 0; j < lengthLongestSeq; j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 235 | if(code >= 0 && code < conservationPixmaps->size()) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 268 | if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 280 | if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 291 | if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) | ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable 'codeForSpace' [-Wunused-variable] 215 | int codeForSpace = clustalw::userParameters->resIndex( | ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generateSecStructurePixmaps()': AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 333 | if(i < secStructPixmaps->size() && i < secStructInfo.size()) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:344:51: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 344 | fontMetrics.width(secStructInfo[i])/2, | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::drawContents(QPainter*, int, int, int, int)': AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 569 | if(selectedRes >= selectedColoredRes->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::calcConserveInfo()': AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 689 | for(int j = 1; j <= strongGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 693 | for(int j = 1; j <= weakGroup.size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 700 | if((i + _fRes - 1 < (*alignment)[j].size()) && | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 701 | (i + _fRes - 1 < (*alignment)[_fSeq].size())) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 725 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 737 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 760 | for(int k = 1; k <= strongGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 771 | for(int k = 1; k <= weakGroup.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)': AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 878 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'QString AlignmentWidget::initConsensus()': AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 927 | if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function 'void AlignmentWidget::generatePixMaps()': AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 1039 | for(int j = 0; j < aminoAcid.size(); j++) | ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:1051:61: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1051 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1079:57: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1079 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1089:57: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1089 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1099:57: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1099 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ AlignmentWidget.cpp:1118:42: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1118 | fontMetrics.width(currentChar)/2, | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentWidget.cpp:48: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeGapPenaltyData()': AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 588 | for(i = 0; i < len && i < gapMask->size(); i++) | ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeSecStructData()': AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 645 | for (i = 0; i < len && i < _secStructMask->size();i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 652 | for(i = 0; i < len && i < ssMask.size(); i++) | ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function 'virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)': AlignmentViewerWidget.cpp:781:58: warning: unused parameter 'event' [-Wunused-parameter] 781 | void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) | ~~~~~~~~~~~~~~~^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:85:46: warning: unused parameter 'parentItem' [-Wunused-parameter] 85 | QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:138:86: warning: unused parameter 'parentItem' [-Wunused-parameter] 138 | void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function 'int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)': ColorFileXmlParser.cpp:175:85: warning: unused parameter 'parentItem' [-Wunused-parameter] 175 | int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function 'virtual void AlignmentParameters::showEvent(QShowEvent*)': AlignmentParameters.cpp:48:49: warning: unused parameter 'event' [-Wunused-parameter] 48 | void AlignmentParameters::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp HelpDisplayWidget.cpp: In member function 'std::string* HelpDisplayWidget::loadHelpInformation(char)': HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=] 147 | catch(ifstream::failure e) | ^ HelpDisplayWidget.cpp:61:13: warning: variable 'number' set but not used [-Wunused-but-set-variable] 61 | int i, number, nlines; | ^~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ HistogramWidget.cpp: In member function 'void HistogramWidget::drawContents(QPainter*, int, int, int, int)': HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 180 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 198 | if(column >= 0 && column < arrayOfHeights->size()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:208:73: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 208 | (fontMetrics.width(QString::number(rulerNum))) / 2; | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qlabel.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ HistogramWidget.cpp:241:80: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 241 | (fontMetrics.width(QString::number(0))) / 2, yPos, boxWidth, | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qlabel.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QLabel:1, from HistogramWidget.h:29, from HistogramWidget.cpp:23: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function 'virtual void LowScoringSegParams::showEvent(QShowEvent*)': LowScoringSegParams.cpp:51:49: warning: unused parameter 'event' [-Wunused-parameter] 51 | void LowScoringSegParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function 'virtual void PairwiseParams::showEvent(QShowEvent*)': PairwiseParams.cpp:74:44: warning: unused parameter 'event' [-Wunused-parameter] 74 | void PairwiseParams::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtCore/qdebug.h:54, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborcommon.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborvalue.h:45, from /usr/include/i386-linux-gnu/qt5/QtCore/qcborarray.h:43, from /usr/include/i386-linux-gnu/qt5/QtCore/QtCore:38, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mainwindow.cpp: In member function 'virtual void MainWindow::showEvent(QShowEvent*)': mainwindow.cpp:198:40: warning: unused parameter 'event' [-Wunused-parameter] 198 | void MainWindow::showEvent(QShowEvent* event) | ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function 'void MainWindow::writeViewer1AsPostscript(int)': mainwindow.cpp:1454:47: warning: unused parameter 'type' [-Wunused-parameter] 1454 | void MainWindow::writeViewer1AsPostscript(int type) | ~~~~^~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::writePSFile(PostscriptFileParams*)': PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 207 | if(res.isLetter() && resNumber.size() > i - data->firstSeq) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 307 | if(res.isLetter() && resNumber.size() > seq) | ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 421 | if(res.isLetter() && resNumber.size() > i) | ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable 'err' [-Wunused-variable] 55 | int err; | ^~~ PSPrinter.cpp:73:9: warning: unused variable 'gapPos1' [-Wunused-variable] 73 | int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local | ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable 'gapPos2' [-Wunused-variable] 74 | int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local | ^~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp PSPrinter.cpp: In member function 'void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)': PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 587 | if(data->nameHeader.size() > ix) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp PSPrinter.cpp: In member function 'void PSPrinter::printFooterLine(std::ofstream*, int, int)': PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] 730 | for(i = fr; i <= lr && i < ruler.length(); i++) | ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function 'void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)': PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 789 | for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable 'psY' [-Wunused-variable] 781 | int psX, psY, curveBottom; | ^~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function 'void clustalw::Clustal::align(std::string*, bool)': clustalW/Clustal.cpp:162:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 162 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/Clustal.cpp: In member function 'void clustalw::Clustal::doAlignUseOldTree(std::string*)': clustalW/Clustal.cpp:837:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 837 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from SaveSeqFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function 'virtual void SeqNameWidget::paintEvent(QPaintEvent*)': SeqNameWidget.cpp:375:11: warning: variable 'redrawRect' set but not used [-Wunused-but-set-variable] 375 | QRect redrawRect = event->rect(); | ^~~~~~~~~~ SeqNameWidget.cpp: In member function 'int SeqNameWidget::setMaxNameLength()': SeqNameWidget.cpp:443:65: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 443 | int length = fontMetrics.width(QString(name.c_str())); | ^ In file included from /usr/include/i386-linux-gnu/qt5/QtGui/QtGui:26, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SeqNameWidget.cpp:58: /usr/include/i386-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 512 | bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 535 | string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 673 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 868 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 1027 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 1156 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 1445 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 1560 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)': clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 2095 | catch(VectorOutOfRange e) | ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 2102 | catch(exception e) | ^ clustalW/alignment/AlignmentOutput.cpp: In member function 'void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)': clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type 'class clustalw::VectorOutOfRange' by value [-Wcatch-value=] 2351 | catch(VectorOutOfRange e) | ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function 'bool clustalw::Alignment::keepPortionOfSeqArray(int, int)': clustalW/alignment/Alignment.cpp:1715:24: warning: variable 'posToAddTo' set but not used [-Wunused-but-set-variable] 1715 | SeqArray::iterator posToAddTo = sectionToRealign.begin(); | ^~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from TreeOutputFileNames.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer_impl.h:71, from /usr/include/i386-linux-gnu/qt5/QtCore/qsharedpointer.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qpixmap.h:48, from /usr/include/i386-linux-gnu/qt5/QtGui/qicon.h:46, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qabstractbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/qpushbutton.h:44, from /usr/include/i386-linux-gnu/qt5/QtWidgets/QPushButton:1, from WritePostscriptFile.cpp:14: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/FileReader.cpp: In member function 'int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)': clustalW/fileInput/FileReader.cpp:155:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 155 | auto_ptr fileParser; // Means we dont need to delete it! | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 426 | void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function 'void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)': clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 555 | catch(exception ex) | ^~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function 'virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::string*)': clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter 'offendingSeq' [-Wunused-parameter] 34 | vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function 'virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)': clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] 246 | void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter 'secStructName' [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter 'length' [-Wunused-parameter] 247 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function 'virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::string*)': clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter 'offendingSeq' [-Wunused-parameter] 199 | Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) | ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function 'virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)': clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] 444 | void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter 'secStructMask' [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter 'secStructName' [-Wunused-parameter] 445 | vector& secStructMask, string& secStructName, | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter 'length' [-Wunused-parameter] 446 | int &structPenalties, int length) | ~~~~^~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/fileInput/PIRFileParser.cpp: In member function 'virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)': clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter 'secStructMask' [-Wunused-parameter] 292 | void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter 'secStructName' [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter 'length' [-Wunused-parameter] 293 | string& secStructName, int &structPenalties, int length) | ~~~~^~~~~~ clustalW/fileInput/RSFFileParser.cpp: In member function 'virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::string&, int&, int)': clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] 240 | void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/ClustalWResources.cpp: In member function 'std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const': clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds] 106 | delim[1] = 0; | ~~~~~~~^ clustalW/general/ClustalWResources.cpp:104:10: note: while referencing 'delim' 104 | char delim[1]; | ^~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/general/UserParameters.cpp: In constructor 'clustalw::UserParameters::UserParameters(bool)': clustalW/general/UserParameters.cpp:33:37: warning: unused parameter 'log' [-Wunused-parameter] 33 | UserParameters::UserParameters(bool log) | ~~~~~^~~ clustalW/general/Utility.cpp: In member function 'bool clustalw::Utility::lineType(char*, const char*)': clustalW/general/Utility.cpp:251:8: warning: variable 'n' set but not used [-Wunused-but-set-variable] 251 | int n; | ^ clustalW/general/Utility.cpp: In member function 'virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)': clustalW/general/Utility.cpp:519:39: warning: unused parameter 'ptrToLabelObj' [-Wunused-parameter] 519 | void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) | ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': clustalW/general/Utility.cpp:183:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': clustalW/general/Utility.cpp:221:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 221 | fgets(line, MAXLINE, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] 170 | int count; | ^~~~~ In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor 'clustalw::InteractiveMenu::InteractiveMenu()': clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] 41 | catch(bad_alloc) | ^~~~~~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of 'char* tmpnam(char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | tmpnam (buffer); | ~~~~~~~^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp clustalW/interface/InteractiveMenu.cpp: In member function 'int clustalw::InteractiveMenu::secStrOutputOptions()': clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] 520 | clustalObj->getHelp('C'); | ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here 521 | case 'Q': | ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1190 | system(lin1.c_str()); | ~~~~~~^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)': clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable 'alignmentScore' [-Wunused-variable] 340 | int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 | ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::string)': clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter 'phylipName' [-Wunused-parameter] 359 | string phylipName) | ~~~~~~~^~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::tempInterface(int, int)': clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter 'alignResidueType' [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter 'alignType' [-Wunused-parameter] 1613 | void SubMatrix::tempInterface(int alignResidueType, int alignType) | ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] 1657 | int maxRes; | ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] 1717 | int maxRes; | ^~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function 'void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)': clustalW/tree/ClusterTree.cpp:580:9: warning: variable 'rs' set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable 'rl' set but not used [-Wunused-but-set-variable] 580 | int rs = 0, rl = 0; | ^~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 278 | auto_ptr Tree::createSets(int firstSeq, int lastSeq) | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/Tree.cpp: In member function 'std::auto_ptr clustalw::Tree::createSets(int, int)': clustalW/tree/Tree.cpp:280:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 280 | auto_ptr progAlignSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 38 | auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 57 | auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 102 | auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 108 | auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 133 | auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 138 | auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 142 | auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26 | auto_ptr createSets(int firstSeq, int lastSeq); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 31 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 103 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 195 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)': clustalW/tree/TreeInterface.cpp:200:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 200 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 208 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::string*, std::vector*, int, int, bool*)': clustalW/tree/TreeInterface.cpp:214:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 214 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 439 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::string*, std::vector*, int, int, bool*)': clustalW/tree/TreeInterface.cpp:445:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 445 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 485 | auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)': clustalW/tree/TreeInterface.cpp:490:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 490 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 503 | auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function 'std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string*, bool*)': clustalW/tree/TreeInterface.cpp:506:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 506 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 26 | std::auto_ptr file; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 70 | auto_ptr quickDistMat; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 22 | auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 17 | auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function 'std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)': clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 21 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp g++ -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -dM -E -o moc_predefs.h /usr/lib/i386-linux-gnu/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)': clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized] 1103 | return (maxRes); | ^ In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 23 | auto_ptr generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 51 | auto_ptr progSteps; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 27 | auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /build/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl -I/build/clustalx-2.1+lgpl/clustalW/general -I/build/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/build/clustalx-2.1+lgpl/clustalW/alignment -I/build/clustalx-2.1+lgpl/clustalW -I/build/clustalx-2.1+lgpl/clustalW/fileInput -I/build/clustalx-2.1+lgpl/clustalW/interface -I/build/clustalx-2.1+lgpl/clustalW/pairwise -I/build/clustalx-2.1+lgpl/clustalW/multipleAlign -I/build/clustalx-2.1+lgpl/clustalW/tree -I/build/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/include/c++/10 -I/usr/include/i386-linux-gnu/c++/10 -I/usr/include/c++/10/backward -I/usr/lib/gcc/i686-linux-gnu/10/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:10: AlignOutputFileNames.h:106:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 106 | auto_ptr outFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_AlignOutputFileNames.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp In file included from moc_BootstrapTreeDialog.cpp:10: BootstrapTreeDialog.h:70:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 70 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_BootstrapTreeDialog.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O2 -fdebug-prefix-map=/build/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtXml -I/usr/include/i386-linux-gnu/qt5/QtCore -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/fileInput/FileReader.h:42:38: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 42 | void checkInfile(int* nseqs, auto_ptr& fileParser); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:68:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 68 | bool openExplicitFile(auto_ptr& outFile, string fileName); | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:69:31: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 69 | string openOutputFile(auto_ptr& outFile, string prompt, string path, | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:75:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 75 | auto_ptr clustalOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:76:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 76 | auto_ptr gcgOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:77:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 77 | auto_ptr nbrfOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:78:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 78 | auto_ptr phylipOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:79:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 79 | auto_ptr gdeOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:80:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 80 | auto_ptr nexusOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:10: clustalW/alignment/AlignmentOutput.h:81:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 81 | auto_ptr fastaOutFile; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_mainwindow.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:10: TreeOutputFileNames.h:73:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 73 | auto_ptr treeFileNames; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_TreeOutputFileNames.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | void printInFormat(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 97 | void printVectorToFile(vector& temp, char* name = "tempfile.out"); | ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:10: WritePostscriptFile.h:88:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 88 | auto_ptr params; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from moc_WritePostscriptFile.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o /usr/lib/i386-linux-gnu/libQt5Widgets.so /usr/lib/i386-linux-gnu/libQt5Gui.so /usr/lib/i386-linux-gnu/libQt5Xml.so /usr/lib/i386-linux-gnu/libQt5Core.so -lGL -lpthread /usr/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/build/clustalx-2.1+lgpl' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/clustalx-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/build/clustalx-2.1+lgpl' dh_installman dh_installmime dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'clustalx-dbgsym' in '../clustalx-dbgsym_2.1+lgpl-9_i386.deb'. dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-9_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../clustalx_2.1+lgpl-9_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6629 and its subdirectories I: Current time: Fri Jun 25 00:56:57 -12 2021 I: pbuilder-time-stamp: 1624625817 Fri Jun 25 12:56:58 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Fri Jun 25 12:56:58 UTC 2021 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Fri Jun 25 12:59:16 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. Fri Jun 25 12:59:16 UTC 2021 I: clustalx_2.1+lgpl-9_i386.changes: Format: 1.8 Date: Fri, 04 Dec 2020 22:57:37 +0100 Source: clustalx Binary: clustalx clustalx-dbgsym Architecture: i386 Version: 2.1+lgpl-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Changes: clustalx (2.1+lgpl-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) * No quotet entry in mailcap Checksums-Sha1: 4b3be71ef44952d92c373bbbf90568e9a463a1cf 7577256 clustalx-dbgsym_2.1+lgpl-9_i386.deb 198257ee10df05055299965b71b406cb98ca10c3 9512 clustalx_2.1+lgpl-9_i386.buildinfo 4fc9af9414082c83a769ba342db9f74ceb710168 469460 clustalx_2.1+lgpl-9_i386.deb Checksums-Sha256: 5e5fdc7db7f6c4fcde781561e06964f8809134d3c87817dd42809a0859039e4d 7577256 clustalx-dbgsym_2.1+lgpl-9_i386.deb 3bbb35a8c6cae4923bc6f2a15db55495c6c7d783fc1367ead18b6914f9b60585 9512 clustalx_2.1+lgpl-9_i386.buildinfo 8d0f240b81d8651b4ccbe1e8c3cfdb66301e709db8760c47bf4d777a8f5400be 469460 clustalx_2.1+lgpl-9_i386.deb Files: 83a2ea26d5f8c39ca95887626853762f 7577256 debug optional clustalx-dbgsym_2.1+lgpl-9_i386.deb fea8467b0578e8de0b4f983ffc802847 9512 science optional clustalx_2.1+lgpl-9_i386.buildinfo d6d2da59595ecd10de2b04165e34ebb3 469460 science optional clustalx_2.1+lgpl-9_i386.deb Fri Jun 25 12:59:17 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.BZhxVoBwgA/clustalx_2.1+lgpl-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.BZhxVoBwgA/clustalx_2.1+lgpl-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.BZhxVoBwgA/clustalx_2.1+lgpl-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.BZhxVoBwgA/b1/clustalx_2.1+lgpl-9_i386.changes /srv/reproducible-results/rbuild-debian/tmp.BZhxVoBwgA/b2/clustalx_2.1+lgpl-9_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.340s) 0.340s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.106s) 0.106s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jun 25 12:59:19 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 25 12:59:19 UTC 2021 I: clustalx from bullseye built successfully and reproducibly on i386. Fri Jun 25 12:59:20 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jun 25 12:59:20 UTC 2021 I: Submitting 12K b1/clustalx_2.1+lgpl-9_i386.buildinfo.asc Fri Jun 25 12:59:21 UTC 2021 I: Submitting 12K b2/clustalx_2.1+lgpl-9_i386.buildinfo.asc Fri Jun 25 12:59:22 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 25 12:59:22 UTC 2021 I: Done submitting .buildinfo files. Fri Jun 25 12:59:22 UTC 2021 I: Removing signed clustalx_2.1+lgpl-9_i386.buildinfo.asc files: removed './b1/clustalx_2.1+lgpl-9_i386.buildinfo.asc' removed './b2/clustalx_2.1+lgpl-9_i386.buildinfo.asc'