Mon Jun 14 06:07:57 UTC 2021 I: starting to build dialign/bullseye/i386 on jenkins on '2021-06-14 06:07' Mon Jun 14 06:07:57 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/11510/console.log Mon Jun 14 06:07:57 UTC 2021 I: Downloading source for bullseye/dialign=2.2.1-11 --2021-06-14 06:07:57-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-11.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1982 (1.9K) Saving to: ‘dialign_2.2.1-11.dsc’ 0K . 100% 233M=0s 2021-06-14 06:07:58 (233 MB/s) - ‘dialign_2.2.1-11.dsc’ saved [1982/1982] Mon Jun 14 06:07:58 UTC 2021 I: dialign_2.2.1-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dialign Binary: dialign Architecture: any Version: 2.2.1-11 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://dialign.gobics.de/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/dialign Vcs-Git: https://salsa.debian.org/med-team/dialign.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign deb science optional arch=any Checksums-Sha1: 2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz 8a575d34c7070162440ec468839bbb089d319d53 12404 dialign_2.2.1-11.debian.tar.xz Checksums-Sha256: 046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz d415e9e1fd0286a551d9f6b73a14f2200df2483ace6410d77d2ecb38e87609dc 12404 dialign_2.2.1-11.debian.tar.xz Files: 3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz 01eeced94a0f72cbeafc09d593c95694 12404 dialign_2.2.1-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+zgIQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEY/g//QvsYRJbCKX5eH6QYz+H11RF528zDLgUj 9lGQvgEjsOyXDW/HvIymiho4wQXBQAgrC72niI3lMptJsYcr7J/EHbR9DSHQVYMV HDdh8ycNXHZ+TZRUw7Aw7YLNiwiLKjx5TFaIwzmoSeYeKNfIOcFHUyARuK8o1ER4 iRD0CGgMdU5X/FqSkJS0C0+uk5oJf2MtFpDidhzzslQQCU7/HsSSbEh9k32GDEm7 7Ym0HkIk8OrQLp80+DlJye6fsatd3Rlulk+xawvcvEd1wFzIG/CQctJxJbsR72dL so9fjl794v0uXi8A64Uh0URlIas7Kwzfd7+mxTjEf2Vs8Hv/SPwxpqwO6sTgn2p1 VHRDQUQLMXj8+rYJz5f6JXAEJtdoLRsN2/gDTIYQM5BD9IQzuxTPE2D/oINoZxdm AN4wLnnVflyWYleCLQeVr8w64PKHsSTeNsRoUDz9aPYwqoEma5gkzJI73ZnvELQ9 GPlg1KNhP2NYy9Zb73ceO7GaUGqafGCNH9GklqmqNeGpFhwmDjIw+ehebWIqNVx4 Ga4a+p4QQUvRgNodY6a4moAXdPx+Pjd19VakLqTobZvZQOnx/4c/OQ2LIZHShnfJ dOywFUWgIy+xkUvf6aAnYcuwbfBhD8bqfXUaLdQOx/KueeZGDV5BkRRITFWf3hYL o8Kw7hsTlpo= =tlSy -----END PGP SIGNATURE----- Mon Jun 14 06:07:58 UTC 2021 I: Checking whether the package is not for us Mon Jun 14 06:07:58 UTC 2021 I: Starting 1st build on remote node ionos6-i386.debian.net. Mon Jun 14 06:07:58 UTC 2021 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Mon Jun 14 06:08:18 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 17 00:30:56 -12 2022 I: pbuilder-time-stamp: 1658061056 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dialign_2.2.1-11.dsc] I: copying [./dialign_2.2.1.orig.tar.gz] I: copying [./dialign_2.2.1-11.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.KO4trF3x/trustedkeys.kbx': General error gpgv: Signature made Mon Nov 16 19:49:24 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dialign_2.2.1-11.dsc dpkg-source: info: extracting dialign in dialign-2.2.1 dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz dpkg-source: info: unpacking dialign_2.2.1-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch dpkg-source: info: applying 30_local_doc.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_excess_argument.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/33417/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='78e822e975e642babcdc782e223b5c1a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='33417' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.fSZ4fVqDle/pbuilderrc_fV3p --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.fSZ4fVqDle/b1 --logfile b1/build.log dialign_2.2.1-11.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 16 03:47 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/33417/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 67.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Fetched 18.6 MB in 0s (40.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../10-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../25-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... 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Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dialign dpkg-buildpackage: info: source version 2.2.1-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/dialign-2.2.1' find src/ -name '*.o' -delete dh_clean src/dialign2-2 make[1]: Leaving directory '/build/dialign-2.2.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/dialign-2.2.1' ## CFLAGS = -c -I-DCONS -O2 dh_auto_build --sourcedirectory=src cd src && make -j18 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dialign-2.2.1/src' gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS dialign.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS functions.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS para.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS output.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS wgt.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS anchor.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS regex.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS input.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS frag_chain.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c gcc -g -O2 -fdebug-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c anchor.c: In function 'multi_anc_read': anchor.c:118:5: warning: implicit declaration of function 'erreur' [-Wimplicit-function-declaration] 118 | erreur("\n\n cannot find file with anchor points \n\n\n"); | ^~~~~~ dialign.c:261:1: warning: return type defaults to 'int' [-Wimplicit-int] 261 | main(int argc, char **argv) | ^~~~ anchor.c:131:10: warning: implicit declaration of function 'word_count' [-Wimplicit-function-declaration] 131 | if( word_count( line ) == 6 ) { | ^~~~~~~~~~ dialign.c: In function 'main': dialign.c:392:4: warning: implicit declaration of function 'regex_parse' [-Wimplicit-function-declaration] 392 | regex_parse( mot_regex ) ; | ^~~~~~~~~~~ dialign.c:487:5: warning: implicit declaration of function 'seq_parse' [-Wimplicit-function-declaration] 487 | seq_parse( mot_regex ) ; | ^~~~~~~~~ output.c:64:9: warning: type defaults to 'int' in declaration of 'plot_calc' [-Wimplicit-int] 64 | extern plot_calc( int num , int e_len, float *w_count, float *pl, | ^~~~~~~~~ output.c:66:9: warning: type defaults to 'int' in declaration of 'wgt_type_count' [-Wimplicit-int] 66 | extern wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, | ^~~~~~~~~~~~~~ functions.c:856:1: warning: return type defaults to 'int' [-Wimplicit-int] 856 | wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, | ^~~~~~~~~~~~~~ dialign.c:619:3: warning: implicit declaration of function 'exclude_frg_read' [-Wimplicit-function-declaration] 619 | exclude_frg_read ( input_name , exclude_list ) ; | ^~~~~~~~~~~~~~~~ functions.c:885:1: warning: return type defaults to 'int' [-Wimplicit-int] 885 | plot_calc( int num , int e_len, float *w_count, float *pl, | ^~~~~~~~~ regex.c:154:1: warning: return type defaults to 'int' [-Wimplicit-int] 154 | seq_parse( char *mot_regex ) { | ^~~~~~~~~ input.c: In function 'exclude_frg_read': input.c:65:5: warning: implicit declaration of function 'erreur' [-Wimplicit-function-declaration] 65 | erreur("\n\n cannot find file with excluded fragments \n\n\n"); | ^~~~~~ gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/dialign-2.2.1/src' make[1]: Leaving directory '/build/dialign-2.2.1' create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dialign' in '../dialign_2.2.1-11_i386.deb'. dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-11_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dialign_2.2.1-11_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/33417 and its subdirectories I: Current time: Sun Jul 17 00:31:14 -12 2022 I: pbuilder-time-stamp: 1658061074 Mon Jun 14 06:08:18 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Mon Jun 14 06:08:18 UTC 2021 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Mon Jun 14 06:15:08 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. Mon Jun 14 06:15:08 UTC 2021 I: dialign_2.2.1-11_i386.changes: Format: 1.8 Date: Tue, 17 Nov 2020 08:41:55 +0100 Source: dialign Binary: dialign dialign-dbgsym Architecture: i386 Version: 2.2.1-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dialign - Segment-based multiple sequence alignment Changes: dialign (2.2.1-11) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Trim trailing whitespace. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) Checksums-Sha1: bcb14e2b3bc4f13d9e9b6a1b4bff63a86d9c653a 64856 dialign-dbgsym_2.2.1-11_i386.deb 105d07e6ed322d6e3e946a84f868d4b5e8cc0832 4829 dialign_2.2.1-11_i386.buildinfo da6f1d08e30decdc6349f8b11a96c296f868c8f0 142216 dialign_2.2.1-11_i386.deb Checksums-Sha256: c12e6d7adfc97728598a70cbd695958e6b28f4b4e5f9bc9ac0fc698554fe0f3e 64856 dialign-dbgsym_2.2.1-11_i386.deb 1639348f89298e691d3d8ca60bd85a2204f706cf195c7713813a1f768d7cc127 4829 dialign_2.2.1-11_i386.buildinfo 84ad68b9c5c5d9c123747dea63964c8e50350d8dcdd9f35d6dba912ff886ec22 142216 dialign_2.2.1-11_i386.deb Files: 924e4e19339d5b02669a81874098a944 64856 debug optional dialign-dbgsym_2.2.1-11_i386.deb ce87048351946fedb00ec6398b122c99 4829 science optional dialign_2.2.1-11_i386.buildinfo d9b86138eb76cf86c7fea4f61979ea7c 142216 science optional dialign_2.2.1-11_i386.deb Mon Jun 14 06:15:09 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.fSZ4fVqDle/dialign_2.2.1-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.fSZ4fVqDle/dialign_2.2.1-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.fSZ4fVqDle/dialign_2.2.1-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.fSZ4fVqDle/b1/dialign_2.2.1-11_i386.changes /srv/reproducible-results/rbuild-debian/tmp.fSZ4fVqDle/b2/dialign_2.2.1-11_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.342s) 0.342s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jun 14 06:15:15 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Mon Jun 14 06:15:15 UTC 2021 I: dialign from bullseye built successfully and reproducibly on i386. Mon Jun 14 06:15:16 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jun 14 06:15:16 UTC 2021 I: Submitting 8.0K b1/dialign_2.2.1-11_i386.buildinfo.asc Mon Jun 14 06:15:18 UTC 2021 I: Submitting 8.0K b2/dialign_2.2.1-11_i386.buildinfo.asc Mon Jun 14 06:15:18 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jun 14 06:15:18 UTC 2021 I: Done submitting .buildinfo files. Mon Jun 14 06:15:18 UTC 2021 I: Removing signed dialign_2.2.1-11_i386.buildinfo.asc files: removed './b1/dialign_2.2.1-11_i386.buildinfo.asc' removed './b2/dialign_2.2.1-11_i386.buildinfo.asc'