Thu May 27 05:37:48 UTC 2021 I: starting to build iqtree/bullseye/i386 on jenkins on '2021-05-27 05:37' Thu May 27 05:37:48 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/12995/console.log Thu May 27 05:37:48 UTC 2021 I: Downloading source for bullseye/iqtree=1.6.12+dfsg-1 --2021-05-27 05:37:48-- http://cdn-fastly.deb.debian.org/debian/pool/main/i/iqtree/iqtree_1.6.12+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2233 (2.2K) Saving to: ‘iqtree_1.6.12+dfsg-1.dsc’ 0K .. 100% 159M=0s 2021-05-27 05:37:48 (159 MB/s) - ‘iqtree_1.6.12+dfsg-1.dsc’ saved [2233/2233] Thu May 27 05:37:48 UTC 2021 I: iqtree_1.6.12+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: iqtree Binary: iqtree Architecture: amd64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 Version: 1.6.12+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Kevin Murray Homepage: http://www.cibiv.at/software/iqtree/ Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/iqtree Vcs-Git: https://salsa.debian.org/med-team/iqtree.git Testsuite: autopkgtest Testsuite-Triggers: time Build-Depends: debhelper-compat (= 12), cmake, libeigen3-dev, libsprng2-dev, mpi-default-dev, zlib1g-dev, help2man, time, chrpath Package-List: iqtree deb science optional arch=amd64,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386 Checksums-Sha1: c586235c5198d7a7564dc33b541e9df960c33e90 1283232 iqtree_1.6.12+dfsg.orig.tar.xz 45f3a1c3d113c5afe48d1442f05c974da6be4745 19732 iqtree_1.6.12+dfsg-1.debian.tar.xz Checksums-Sha256: eb82c21141246259e0b2861b85c213e5ea86699c5716a0df2b85864e1c300795 1283232 iqtree_1.6.12+dfsg.orig.tar.xz c556866f25ece05c079dded764a458517764d7a0105052e365a553690fa9ee8b 19732 iqtree_1.6.12+dfsg-1.debian.tar.xz Files: bfa5de5e4d5d2a8d0fa6dc21801a85f9 1283232 iqtree_1.6.12+dfsg.orig.tar.xz e80fa3f01e361526f265343faca3d6a4 19732 iqtree_1.6.12+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl3nsQoTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0Yy9D/99PGv1D3C/ezDWPfYU81623RuA4uUb o6zRG2QbOgCDFyEGr42UBvXjHXfwjfFTMX1vdYtKqhVvZldg31LPBTWZW7f69cng WjT5TIdK1UguLQg1tnq6iaYskuc24e2xQZHSsTa8btaykGYRg/X1l1RYsUT4uRyc PFfRkk+VD8z8WjkTkBwbOXXnC2r11laTrUzRZmE6AbbTsq27O11Eji3JqN7NIU86 35FMvGuPNyxadZ1fyclUKxMbRS8xQH0c1DR3f1m6sKw//r2VO/1UM3YhW6dRQNSx oEGC4OO+NnO8ysic9QZwdGy2Wh0Tyejz2EDsIsL4xR9iveQh69ZDy7WxG/519Icq TTJX59NRTq+lAGDrwlN5N3E7C5oi40ir9Ug7pwhsK6bdBR1Gf2S9fD1fR7Oahhp4 WA51yBYfG50fhkC7FyJBfKQMFuu0nU46QTLaEIxjE2SZUPBRdQCrJHZAqTA+AJi0 e4cdu601TZGrn4TDGpyuRZdh1zMsFkes18/JdpHAXBFtR6Y5xHRnAeEphxKZ+AXf Lz//kwSl2yscmNdTowhJlHdDO941vjcbZdnM5jFHGS4u70P7f7ln/rUanuFp3b5X tJW2lDIjg4uFpM4DjDJHay9y5sa+8epRaS4fxX4NQA7SG+CVdCJYgk3UiWhaSvWr 2xZfD854VU9M2g== =1Syw -----END PGP SIGNATURE----- Thu May 27 05:37:48 UTC 2021 I: Checking whether the package is not for us Thu May 27 05:37:48 UTC 2021 I: Starting 1st build on remote node ionos16-i386.debian.net. Thu May 27 05:37:48 UTC 2021 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Thu May 27 05:44:51 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 29 00:00:49 -12 2022 I: pbuilder-time-stamp: 1656504049 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [iqtree_1.6.12+dfsg-1.dsc] I: copying [./iqtree_1.6.12+dfsg.orig.tar.xz] I: copying [./iqtree_1.6.12+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.y66gU2R2/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 4 01:13:46 2019 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./iqtree_1.6.12+dfsg-1.dsc dpkg-source: info: extracting iqtree in iqtree-1.6.12+dfsg dpkg-source: info: unpacking iqtree_1.6.12+dfsg.orig.tar.xz dpkg-source: info: unpacking iqtree_1.6.12+dfsg-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/39002/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c5d8111758fb4e939e492e4b7dbf76b3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='39002' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.N9BuDt5HdX/pbuilderrc_lSSe --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.N9BuDt5HdX/b1 --logfile b1/build.log iqtree_1.6.12+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 28 03:46 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/39002/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), cmake, libeigen3-dev, libsprng2-dev, mpi-default-dev, zlib1g-dev, help2man, time, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libsprng2-dev; however: Package libsprng2-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-10{a} groff-base{a} help2man{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcbor0{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgmp-dev{a} libgmpxx4ldbl{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu67{a} libjs-jquery{a} libjs-jquery-ui{a} libjsoncpp24{a} libldap-2.4-2{a} liblocale-gettext-perl{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libpsm-infinipath1{a} librdmacm1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsprng2{a} libsprng2-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} sensible-utils{a} time{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 57.8 MB of archives. After unpacking 216 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 liblocale-gettext-perl i386 1.07-4+b1 [19.4 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libcbor0 i386 0.5.0+dfsg-2 [26.2 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libfido2-1 i386 1.6.0-2 [59.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 openssh-client i386 1:8.4p1-5 [991 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.2 [372 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-1 [139 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 help2man i386 1.48.1 [190 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libnl-3-200 i386 3.4.0-1+b1 [66.4 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-200 i386 3.4.0-1+b1 [168 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libibverbs1 i386 33.1+git20210317-1 [64.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 ibverbs-providers i386 33.1+git20210317-1 [275 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libeigen3-dev all 3.3.9-2 [858 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libevent-2.1-7 i386 2.1.12-stable-1 [203 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libevent-core-2.1-7 i386 2.1.12-stable-1 [148 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-1 [116 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-1 [57.3 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-1 [64.9 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libevent-dev i386 2.1.12-stable-1 [332 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.1 [178 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 librdmacm1 i386 33.1+git20210317-1 [74.9 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libfabric1 i386 1.11.0-2 [518 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libgmpxx4ldbl i386 2:6.2.1+dfsg-1 [338 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libgmp-dev i386 2:6.2.1+dfsg-1 [658 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libhwloc15 i386 2.4.1+dfsg-1 [164 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libnuma1 i386 2.0.12-1+b1 [27.9 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libnuma-dev i386 2.0.12-1+b1 [41.2 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libltdl-dev i386 2.4.6-15 [164 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libhwloc-dev i386 2.4.1+dfsg-1 [250 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.1-1 [310 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.1-1 [796 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libxnvctrl0 i386 460.56-1 [26.8 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 ocl-icd-libopencl1 i386 2.2.14-2 [45.0 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libhwloc-plugins i386 2.4.1+dfsg-1 [22.0 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libnl-3-dev i386 3.4.0-1+b1 [107 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-dev i386 3.4.0-1+b1 [192 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libibverbs-dev i386 33.1+git20210317-1 [521 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libpmix2 i386 4.0.0-4 [582 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libopenmpi3 i386 4.1.0-8 [2143 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 openmpi-common all 4.1.0-8 [179 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libpmix-dev i386 4.0.0-4 [717 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 openmpi-bin i386 4.1.0-8 [209 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libopenmpi-dev i386 4.1.0-8 [1142 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libsprng2 i386 2.0a-13 [80.3 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libsprng2-dev i386 2.0a-13 [83.4 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 mpi-default-dev i386 1.13 [5476 B] Get: 112 http://deb.debian.org/debian bullseye/main i386 time i386 1.9-0.1 [50.9 kB] Fetched 57.8 MB in 1s (44.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../001-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../003-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../005-liblocale-gettext-perl_1.07-4+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../006-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../007-libprocps8_2%3a3.3.17-5_i386.deb ... Unpacking libprocps8:i386 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../008-procps_2%3a3.3.17-5_i386.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../011-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:i386. Preparing to unpack .../014-libmd0_1.0.3-3_i386.deb ... Unpacking libmd0:i386 (1.0.3-3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../015-libbsd0_0.11.3-1_i386.deb ... Unpacking libbsd0:i386 (0.11.3-1) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../016-libedit2_3.1-20191231-2+b1_i386.deb ... Unpacking libedit2:i386 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:i386. Preparing to unpack .../017-libcbor0_0.5.0+dfsg-2_i386.deb ... Unpacking libcbor0:i386 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:i386. Preparing to unpack .../018-libfido2-1_1.6.0-2_i386.deb ... Unpacking libfido2-1:i386 (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../019-openssh-client_1%3a8.4p1-5_i386.deb ... Unpacking openssh-client (1:8.4p1-5) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../020-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package chrpath. Preparing to unpack .../026-chrpath_0.16-2+b1_i386.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../027-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../028-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../029-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../030-libarchive13_3.4.3-2+b1_i386.deb ... Unpacking libarchive13:i386 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../031-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../032-libsasl2-modules-db_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../033-libsasl2-2_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../034-libldap-2.4-2_2.4.57+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../035-libnghttp2-14_1.43.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.43.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../036-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../037-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../038-libssh2-1_1.9.0-2_i386.deb ... Unpacking libssh2-1:i386 (1.9.0-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../039-libcurl4_7.74.0-1.2_i386.deb ... Unpacking libcurl4:i386 (7.74.0-1.2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../040-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:i386. Preparing to unpack .../041-libjsoncpp24_1.9.4-4_i386.deb ... Unpacking libjsoncpp24:i386 (1.9.4-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../042-librhash0_1.4.1-2_i386.deb ... Unpacking librhash0:i386 (1.4.1-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../043-libuv1_1.40.0-1_i386.deb ... Unpacking libuv1:i386 (1.40.0-1) ... Selecting previously unselected package cmake. Preparing to unpack .../044-cmake_3.18.4-2_i386.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../045-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../046-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../047-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../048-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../049-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../051-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../052-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../053-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../054-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../055-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../057-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../058-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package libgfortran-10-dev:i386. Preparing to unpack .../059-libgfortran-10-dev_10.2.1-6_i386.deb ... Unpacking libgfortran-10-dev:i386 (10.2.1-6) ... Selecting previously unselected package gfortran-10. Preparing to unpack .../060-gfortran-10_10.2.1-6_i386.deb ... Unpacking gfortran-10 (10.2.1-6) ... Selecting previously unselected package help2man. Preparing to unpack .../061-help2man_1.48.1_i386.deb ... Unpacking help2man (1.48.1) ... Selecting previously unselected package libnl-3-200:i386. Preparing to unpack .../062-libnl-3-200_3.4.0-1+b1_i386.deb ... Unpacking libnl-3-200:i386 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:i386. Preparing to unpack .../063-libnl-route-3-200_3.4.0-1+b1_i386.deb ... Unpacking libnl-route-3-200:i386 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:i386. Preparing to unpack .../064-libibverbs1_33.1+git20210317-1_i386.deb ... Unpacking libibverbs1:i386 (33.1+git20210317-1) ... Selecting previously unselected package ibverbs-providers:i386. Preparing to unpack .../065-ibverbs-providers_33.1+git20210317-1_i386.deb ... Unpacking ibverbs-providers:i386 (33.1+git20210317-1) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../066-libglib2.0-0_2.66.8-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.66.8-1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../067-pkg-config_0.29.2-1_i386.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../068-libeigen3-dev_3.3.9-2_all.deb ... Unpacking libeigen3-dev (3.3.9-2) ... Selecting previously unselected package libevent-2.1-7:i386. Preparing to unpack .../069-libevent-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-core-2.1-7:i386. Preparing to unpack .../070-libevent-core-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-core-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-extra-2.1-7:i386. Preparing to unpack .../071-libevent-extra-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-extra-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:i386. Preparing to unpack .../072-libevent-pthreads-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-pthreads-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-openssl-2.1-7:i386. Preparing to unpack .../073-libevent-openssl-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-openssl-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../074-libevent-dev_2.1.12-stable-1_i386.deb ... Unpacking libevent-dev (2.1.12-stable-1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../075-libpsm-infinipath1_3.3+20.604758e7-6.1_i386.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.1) ... Selecting previously unselected package librdmacm1:i386. Preparing to unpack .../076-librdmacm1_33.1+git20210317-1_i386.deb ... Unpacking librdmacm1:i386 (33.1+git20210317-1) ... Selecting previously unselected package libfabric1. Preparing to unpack .../077-libfabric1_1.11.0-2_i386.deb ... Unpacking libfabric1 (1.11.0-2) ... Selecting previously unselected package libgmpxx4ldbl:i386. Preparing to unpack .../078-libgmpxx4ldbl_2%3a6.2.1+dfsg-1_i386.deb ... Unpacking libgmpxx4ldbl:i386 (2:6.2.1+dfsg-1) ... Selecting previously unselected package libgmp-dev:i386. Preparing to unpack .../079-libgmp-dev_2%3a6.2.1+dfsg-1_i386.deb ... Unpacking libgmp-dev:i386 (2:6.2.1+dfsg-1) ... Selecting previously unselected package libhwloc15:i386. Preparing to unpack .../080-libhwloc15_2.4.1+dfsg-1_i386.deb ... Unpacking libhwloc15:i386 (2.4.1+dfsg-1) ... Selecting previously unselected package libnuma1:i386. Preparing to unpack .../081-libnuma1_2.0.12-1+b1_i386.deb ... Unpacking libnuma1:i386 (2.0.12-1+b1) ... Selecting previously unselected package libnuma-dev:i386. Preparing to unpack .../082-libnuma-dev_2.0.12-1+b1_i386.deb ... Unpacking libnuma-dev:i386 (2.0.12-1+b1) ... Selecting previously unselected package libltdl7:i386. Preparing to unpack .../083-libltdl7_2.4.6-15_i386.deb ... Unpacking libltdl7:i386 (2.4.6-15) ... Selecting previously unselected package libltdl-dev:i386. Preparing to unpack .../084-libltdl-dev_2.4.6-15_i386.deb ... Unpacking libltdl-dev:i386 (2.4.6-15) ... Selecting previously unselected package libhwloc-dev:i386. Preparing to unpack .../085-libhwloc-dev_2.4.1+dfsg-1_i386.deb ... Unpacking libhwloc-dev:i386 (2.4.1+dfsg-1) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../086-libpciaccess0_0.16-1_i386.deb ... Unpacking libpciaccess0:i386 (0.16-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../087-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../088-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../089-libxcb1_1.14-3_i386.deb ... Unpacking libxcb1:i386 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../090-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../091-libx11-6_2%3a1.7.1-1_i386.deb ... Unpacking libx11-6:i386 (2:1.7.1-1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../092-libxext6_2%3a1.3.3-1.1_i386.deb ... Unpacking libxext6:i386 (2:1.3.3-1.1) ... Selecting previously unselected package libxnvctrl0:i386. Preparing to unpack .../093-libxnvctrl0_460.56-1_i386.deb ... Unpacking libxnvctrl0:i386 (460.56-1) ... Selecting previously unselected package ocl-icd-libopencl1:i386. Preparing to unpack .../094-ocl-icd-libopencl1_2.2.14-2_i386.deb ... Unpacking ocl-icd-libopencl1:i386 (2.2.14-2) ... Selecting previously unselected package libhwloc-plugins:i386. Preparing to unpack .../095-libhwloc-plugins_2.4.1+dfsg-1_i386.deb ... Unpacking libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Selecting previously unselected package libnl-3-dev:i386. Preparing to unpack .../096-libnl-3-dev_3.4.0-1+b1_i386.deb ... Unpacking libnl-3-dev:i386 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-dev:i386. Preparing to unpack .../097-libnl-route-3-dev_3.4.0-1+b1_i386.deb ... Unpacking libnl-route-3-dev:i386 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs-dev:i386. Preparing to unpack .../098-libibverbs-dev_33.1+git20210317-1_i386.deb ... Unpacking libibverbs-dev:i386 (33.1+git20210317-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../099-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../100-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package libpmix2:i386. Preparing to unpack .../101-libpmix2_4.0.0-4_i386.deb ... Unpacking libpmix2:i386 (4.0.0-4) ... Selecting previously unselected package libopenmpi3:i386. Preparing to unpack .../102-libopenmpi3_4.1.0-8_i386.deb ... Unpacking libopenmpi3:i386 (4.1.0-8) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../103-openmpi-common_4.1.0-8_all.deb ... Unpacking openmpi-common (4.1.0-8) ... Selecting previously unselected package libpmix-dev:i386. Preparing to unpack .../104-libpmix-dev_4.0.0-4_i386.deb ... Unpacking libpmix-dev:i386 (4.0.0-4) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../105-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../106-openmpi-bin_4.1.0-8_i386.deb ... Unpacking openmpi-bin (4.1.0-8) ... Selecting previously unselected package libopenmpi-dev:i386. Preparing to unpack .../107-libopenmpi-dev_4.1.0-8_i386.deb ... Unpacking libopenmpi-dev:i386 (4.1.0-8) ... Selecting previously unselected package libsprng2. Preparing to unpack .../108-libsprng2_2.0a-13_i386.deb ... Unpacking libsprng2 (2.0a-13) ... Selecting previously unselected package libsprng2-dev. Preparing to unpack .../109-libsprng2-dev_2.0a-13_i386.deb ... Unpacking libsprng2-dev (2.0a-13) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../110-mpi-default-dev_1.13_i386.deb ... Unpacking mpi-default-dev (1.13) ... Selecting previously unselected package time. Preparing to unpack .../111-time_1.9-0.1_i386.deb ... Unpacking time (1.9-0.1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up libpciaccess0:i386 (0.16-1) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up time (1.9-0.1) ... Setting up libpsl5:i386 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libcbor0:i386 (0.5.0+dfsg-2) ... Setting up libnghttp2-14:i386 (1.43.0-1) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libgmpxx4ldbl:i386 (2:6.2.1+dfsg-1) ... Setting up libuv1:i386 (1.40.0-1) ... Setting up libx11-data (2:1.7.1-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.2+20201114-2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libhwloc15:i386 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:i386 (2.1.12-stable-1) ... Setting up libevent-2.1-7:i386 (2.1.12-stable-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up libltdl7:i386 (2.4.6-15) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up libjsoncpp24:i386 (1.9.4-4) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up libnuma1:i386 (2.0.12-1+b1) ... Setting up libmd0:i386 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:i386 (2.2.14-2) ... Setting up librhash0:i386 (1.4.1-2) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libnl-3-200:i386 (3.4.0-1+b1) ... Setting up openmpi-common (4.1.0-8) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:i386 (10.2.1-6) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libfido2-1:i386 (1.6.0-2) ... Setting up libbsd0:i386 (0.11.3-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up chrpath (0.16-2+b1) ... Setting up libsprng2 (2.0a-13) ... Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libevent-pthreads-2.1-7:i386 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:i386 (2.1.12-stable-1) ... Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libgmp-dev:i386 (2:6.2.1+dfsg-1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:i386 (3.4.3-2+b1) ... Setting up libedit2:i386 (3.1-20191231-2+b1) ... Setting up libevent-openssl-2.1-7:i386 (2.1.12-stable-1) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:i386 (2.0.12-1+b1) ... Setting up libnl-route-3-200:i386 (3.4.0-1+b1) ... Setting up help2man (1.48.1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up libeigen3-dev (3.3.9-2) ... Setting up gfortran-10 (10.2.1-6) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libnl-3-dev:i386 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libsprng2-dev (2.0a-13) ... Setting up libcurl4:i386 (7.74.0-1.2) ... Setting up libx11-6:i386 (2:1.7.1-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:i386 (33.1+git20210317-1) ... Setting up ibverbs-providers:i386 (33.1+git20210317-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:i386 (460.56-1) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:i386 (3.4.0-1+b1) ... Setting up libltdl-dev:i386 (2.4.6-15) ... Setting up cmake (3.18.4-2) ... Setting up libhwloc-dev:i386 (2.4.1+dfsg-1) ... Setting up librdmacm1:i386 (33.1+git20210317-1) ... Setting up debhelper (13.3.4) ... Setting up libibverbs-dev:i386 (33.1+git20210317-1) ... Setting up libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpmix2:i386 (4.0.0-4) ... Setting up libopenmpi3:i386 (4.1.0-8) ... Setting up libpmix-dev:i386 (4.0.0-4) ... Setting up openmpi-bin (4.1.0-8) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (4.1.0-8) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/iqtree-1.6.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package iqtree dpkg-buildpackage: info: source version 1.6.12+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' dh_auto_clean -Bbuild.omp dh_auto_clean -Bbuild.serial dh_auto_clean -Bbuild.mpi dh override_dh_auto_clean make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' dh_auto_configure -Bbuild.omp -- -DIQTREE_FLAGS="omp" cd build.omp && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DIQTREE_FLAGS=omp .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done IQ-TREE flags : omp Target OS : Unix Compiler : GNU Compiler (gcc) Target binary : 32-bit OpenMP : Yes MPI : NONE Vectorization : SSE3/AVX/AVX2 LINKER flags : -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--gc-sections -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for GlobalMemoryStatusEx -- Looking for GlobalMemoryStatusEx - not found -- Looking for strndup -- Looking for strndup - found -- Looking for strtok_r -- Looking for strtok_r - found -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") Using system zlib -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/iqtree-1.6.12+dfsg/build.omp dh_auto_configure -Bbuild.serial -- -DIQTREE_FLAGS="" cd build.serial && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DIQTREE_FLAGS= .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done IQ-TREE flags : Target OS : Unix Compiler : GNU Compiler (gcc) Target binary : 32-bit OpenMP : Yes MPI : NONE Vectorization : SSE3/AVX/AVX2 LINKER flags : -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--gc-sections -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for GlobalMemoryStatusEx -- Looking for GlobalMemoryStatusEx - not found -- Looking for strndup -- Looking for strndup - found -- Looking for strtok_r -- Looking for strtok_r - found -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") Using system zlib -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/iqtree-1.6.12+dfsg/build.serial dh_auto_configure -Bbuild.mpi -- -DIQTREE_FLAGS="mpi" cd build.mpi && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DIQTREE_FLAGS=mpi .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done IQ-TREE flags : mpi Target OS : Unix Compiler : GNU Compiler (gcc) -- Found MPI_C: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") Target binary : 32-bit OpenMP : Yes MPI : Yes Vectorization : SSE3/AVX/AVX2 LINKER flags : -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--gc-sections -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for GlobalMemoryStatusEx -- Looking for GlobalMemoryStatusEx - not found -- Looking for strndup -- Looking for strndup - found -- Looking for strtok_r -- Looking for strtok_r - found -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") Using system zlib -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/iqtree-1.6.12+dfsg/build.mpi dh override_dh_auto_configure make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' dh_auto_build -Bbuild.omp cd build.omp && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' /usr/bin/cmake -S/build/iqtree-1.6.12+dfsg -B/build/iqtree-1.6.12+dfsg/build.omp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles /build/iqtree-1.6.12+dfsg/build.omp//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/depend make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/depend make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/depend make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/gsl /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/gsl /build/iqtree-1.6.12+dfsg/build.omp/gsl/CMakeFiles/gsl.dir/DependInfo.cmake --color= make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/depend make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/ncl /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/ncl /build/iqtree-1.6.12+dfsg/build.omp/ncl/CMakeFiles/ncl.dir/DependInfo.cmake --color= make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pll /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/pll /build/iqtree-1.6.12+dfsg/build.omp/pll/CMakeFiles/pll.dir/DependInfo.cmake --color= make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/lbfgsb /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/lbfgsb /build/iqtree-1.6.12+dfsg/build.omp/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake --color= make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/kernelsse.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/nclextra /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/nclextra /build/iqtree-1.6.12+dfsg/build.omp/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/sprng /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/sprng /build/iqtree-1.6.12+dfsg/build.omp/sprng/CMakeFiles/sprng.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/whtest /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/whtest /build/iqtree-1.6.12+dfsg/build.omp/whtest/CMakeFiles/whtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/vectorclass /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/vectorclass /build/iqtree-1.6.12+dfsg/build.omp/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.omp/gsl/CMakeFiles/gsl.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/gsl/CMakeFiles/gsl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/gsl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/gsl/CMakeFiles/gsl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/pll/CMakeFiles/pll.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/pll/CMakeFiles/pll.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/pll/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/pll/CMakeFiles/pll.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/sprng/CMakeFiles/sprng.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/sprng/CMakeFiles/sprng.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/sprng/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/sprng/CMakeFiles/sprng.dir/depend.internal". Scanning dependencies of target gsl Dependee "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/kernelsse.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/kernelsse.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/kernelsse.dir/depend.internal". make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' Dependee "/build/iqtree-1.6.12+dfsg/build.omp/whtest/CMakeFiles/whtest.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/whtest/CMakeFiles/whtest.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/whtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/whtest/CMakeFiles/whtest.dir/depend.internal". make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/build Dependee "/build/iqtree-1.6.12+dfsg/build.omp/ncl/CMakeFiles/ncl.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/ncl/CMakeFiles/ncl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/ncl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/ncl/CMakeFiles/ncl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/lbfgsb/CMakeFiles/lbfgsb.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/lbfgsb/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/lbfgsb/CMakeFiles/lbfgsb.dir/depend.internal". make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' Scanning dependencies of target sprng make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' Dependee "/build/iqtree-1.6.12+dfsg/build.omp/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/nclextra/CMakeFiles/nclextra.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/nclextra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/nclextra/CMakeFiles/nclextra.dir/depend.internal". make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/build Scanning dependencies of target lbfgsb make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' Dependee "/build/iqtree-1.6.12+dfsg/build.omp/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/vectorclass/CMakeFiles/vectorclass.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/vectorclass/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/vectorclass/CMakeFiles/vectorclass.dir/depend.internal". make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' Scanning dependencies of target vectorclass make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' Scanning dependencies of target whtest make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' Scanning dependencies of target nclextra make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/build Scanning dependencies of target ncl make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/build [ 0%] Building CXX object gsl/CMakeFiles/gsl.dir/multinomial.cpp.o [ 1%] Building CXX object gsl/CMakeFiles/gsl.dir/binomial_tpe.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/multinomial.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/multinomial.cpp make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/build [ 2%] Building CXX object gsl/CMakeFiles/gsl.dir/pow_int.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/binomial_tpe.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/binomial_tpe.cpp make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 3%] Building CXX object gsl/CMakeFiles/gsl.dir/gauss.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/pow_int.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/pow_int.cpp [ 3%] Building CXX object gsl/CMakeFiles/gsl.dir/gaussinv.cpp.o make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/build [ 3%] Building C object sprng/CMakeFiles/sprng.dir/lcg64.c.o [ 4%] Building CXX object gsl/CMakeFiles/gsl.dir/gausspdf.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gaussinv.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gaussinv.cpp [ 5%] Building C object sprng/CMakeFiles/sprng.dir/makeseed.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gauss.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gauss.cpp [ 6%] Building C object sprng/CMakeFiles/sprng.dir/memory.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gausspdf.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gausspdf.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/lcg64.c.o -c /build/iqtree-1.6.12+dfsg/sprng/lcg64.c [ 6%] Building CXX object lbfgsb/CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp/lbfgsb && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o -c /build/iqtree-1.6.12+dfsg/lbfgsb/lbfgsb_new.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/makeseed.c.o -c /build/iqtree-1.6.12+dfsg/sprng/makeseed.c [ 7%] Building C object sprng/CMakeFiles/sprng.dir/primes-lcg64.c.o [ 7%] Building C object sprng/CMakeFiles/sprng.dir/store.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/memory.c.o -c /build/iqtree-1.6.12+dfsg/sprng/memory.c cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/store.c.o -c /build/iqtree-1.6.12+dfsg/sprng/store.c cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/primes-lcg64.c.o -c /build/iqtree-1.6.12+dfsg/sprng/primes-lcg64.c [ 8%] Building C object whtest/CMakeFiles/whtest.dir/eigen.c.o Scanning dependencies of target kernelsse Scanning dependencies of target pll [ 9%] Building CXX object vectorclass/CMakeFiles/vectorclass.dir/instrset_detect.cpp.o make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/eigen.c.o -c /build/iqtree-1.6.12+dfsg/whtest/eigen.c make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/build [ 10%] Building CXX object nclextra/CMakeFiles/nclextra.dir/mpdablock.cpp.o make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/mpdablock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/mpdablock.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/vectorclass && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/vectorclass.dir/instrset_detect.cpp.o -c /build/iqtree-1.6.12+dfsg/vectorclass/instrset_detect.cpp make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 11%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsassumptionsblock.cpp [ 11%] Building C object pll/CMakeFiles/pll.dir/alignment.c.o [ 12%] Building CXX object CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/alignment.c.o -c /build/iqtree-1.6.12+dfsg/pll/alignment.c /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylokernelsse.cpp [ 12%] Building C object sprng/CMakeFiles/sprng.dir/checkid.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/checkid.c.o -c /build/iqtree-1.6.12+dfsg/sprng/checkid.c [ 12%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsblock.cpp [ 12%] Building C object whtest/CMakeFiles/whtest.dir/eigen_sym.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/eigen_sym.c.o -c /build/iqtree-1.6.12+dfsg/whtest/eigen_sym.c In file included from /build/iqtree-1.6.12+dfsg/pll/alignment.c:40: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 14%] Building C object whtest/CMakeFiles/whtest.dir/random.c.o [ 14%] Building CXX object ncl/CMakeFiles/ncl.dir/nxscharactersblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxscharactersblock.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/random.c.o -c /build/iqtree-1.6.12+dfsg/whtest/random.c [ 15%] Building C object pll/CMakeFiles/pll.dir/bipartitionList.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/bipartitionList.c.o -c /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c [ 15%] Building C object pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/evaluateGenericSpecial.c [ 15%] Linking CXX static library libvectorclass.a cd /build/iqtree-1.6.12+dfsg/build.omp/vectorclass && /usr/bin/cmake -P CMakeFiles/vectorclass.dir/cmake_clean_target.cmake [ 15%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdatablock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdatablock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdatablock.cpp [ 16%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/weisslambda.c.o -c /build/iqtree-1.6.12+dfsg/whtest/weisslambda.c [ 17%] Building C object pll/CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/vectorclass && /usr/bin/cmake -E cmake_link_script CMakeFiles/vectorclass.dir/link.txt --verbose=1 [ 18%] Linking C static library libsprng.a cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cmake -P CMakeFiles/sprng.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c /usr/bin/ar qc libvectorclass.a CMakeFiles/vectorclass.dir/instrset_detect.cpp.o /usr/bin/ranlib libvectorclass.a cd /build/iqtree-1.6.12+dfsg/build.omp/sprng && /usr/bin/cmake -E cmake_link_script CMakeFiles/sprng.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' /usr/bin/ar qc libsprng.a CMakeFiles/sprng.dir/lcg64.c.o CMakeFiles/sprng.dir/makeseed.c.o CMakeFiles/sprng.dir/memory.c.o CMakeFiles/sprng.dir/store.c.o CMakeFiles/sprng.dir/primes-lcg64.c.o CMakeFiles/sprng.dir/checkid.c.o In file included from /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:29: /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c: In function 'insertHashRF': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:332:3: note: in expansion of macro 'rax_posix_memalign' 332 | rax_posix_memalign ((void **)&(e->bitVector), PLL_BYTE_ALIGNMENT, (size_t)vectorLength * sizeof(unsigned int)); | ^~~~~~~~~~~~~~~~~~ /usr/bin/ranlib libsprng.a [ 18%] Built target vectorclass make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 18%] Linking CXX static library libgsl.a cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/cmake -P CMakeFiles/gsl.dir/cmake_clean_target.cmake [ 19%] Building C object pll/CMakeFiles/pll.dir/fastDNAparsimony.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/fastDNAparsimony.c.o -c /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c In file included from /build/iqtree-1.6.12+dfsg/pll/evaluateGenericSpecial.c:46: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 19%] Built target sprng cd /build/iqtree-1.6.12+dfsg/build.omp/gsl && /usr/bin/cmake -E cmake_link_script CMakeFiles/gsl.dir/link.txt --verbose=1 [ 19%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda_sub.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/weisslambda_sub.c.o -c /build/iqtree-1.6.12+dfsg/whtest/weisslambda_sub.c /usr/bin/ar qc libgsl.a CMakeFiles/gsl.dir/binomial_tpe.cpp.o CMakeFiles/gsl.dir/multinomial.cpp.o CMakeFiles/gsl.dir/pow_int.cpp.o CMakeFiles/gsl.dir/gauss.cpp.o CMakeFiles/gsl.dir/gaussinv.cpp.o CMakeFiles/gsl.dir/gausspdf.cpp.o In file included from /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:45: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:31: /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRCAT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1175:3: note: in expansion of macro 'rax_posix_memalign' 1175 | rax_posix_memalign ((void **) &lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 4 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRGAMMA': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1017:3: note: in expansion of macro 'rax_posix_memalign' 1017 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 16 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRCATPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1326:3: note: in expansion of macro 'rax_posix_memalign' 1326 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 20 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRGAMMAPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:936:3: note: in expansion of macro 'rax_posix_memalign' 936 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 80 * mxtips); | ^~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o /usr/bin/ranlib libgsl.a cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdiscretedatum.cpp make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 20%] Built target gsl In file included from /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:113: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:29: /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c: In function 'compressDNA': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:1692:7: note: in expansion of macro 'rax_posix_memalign' 1692 | rax_posix_memalign ((void **) &(pr->partitionData[model]->parsVect), PLL_BYTE_ALIGNMENT, (size_t)compressedEntriesPadded * states * totalNodes * sizeof(parsimonyNumber)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:1768:3: note: in expansion of macro 'rax_posix_memalign' 1768 | rax_posix_memalign ((void **) &(tr->parsimonyScore), PLL_BYTE_ALIGNMENT, sizeof(unsigned int) * totalNodes); | ^~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdiscretematrix.cpp [ 21%] Building C object pll/CMakeFiles/pll.dir/hardware.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/hardware.c.o -c /build/iqtree-1.6.12+dfsg/pll/hardware.c [ 22%] Building C object whtest/CMakeFiles/whtest.dir/whtest.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest.c.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest.c [ 23%] Building C object pll/CMakeFiles/pll.dir/hash.c.o /build/iqtree-1.6.12+dfsg/pll/hardware.c: In function 'pll_probe_cpu': /build/iqtree-1.6.12+dfsg/pll/hardware.c:93:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf (fd, "%d", &id); | ^~~~~~~~~~~~~~~~~~~~~~ cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/hash.c.o -c /build/iqtree-1.6.12+dfsg/pll/hash.c [ 23%] Building C object pll/CMakeFiles/pll.dir/lexer.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/lexer.c.o -c /build/iqtree-1.6.12+dfsg/pll/lexer.c [ 23%] Building C object whtest/CMakeFiles/whtest.dir/whtest_sub.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest_sub.c.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c [ 24%] Building CXX object whtest/CMakeFiles/whtest.dir/whtest_wrapper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest_wrapper.cpp.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest_wrapper.cpp [ 25%] Building C object pll/CMakeFiles/pll.dir/makenewzGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c: In function 'ReadData': /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c:205:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fscanf ( ifp, "%c", &c ); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c:221:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 221 | fscanf ( ifp, "%c", &c ); | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building C object pll/CMakeFiles/pll.dir/models.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/models.c.o -c /build/iqtree-1.6.12+dfsg/pll/models.c In file included from /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:44: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:29: /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c: In function 'coreGTRCAT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:2699:3: note: in expansion of macro 'rax_posix_memalign' 2699 | rax_posix_memalign ((void **) &d_start, PLL_BYTE_ALIGNMENT, numberOfCategories * 4 * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c: In function 'coreGTRCATPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:3074:3: note: in expansion of macro 'rax_posix_memalign' 3074 | rax_posix_memalign ((void **)&d_start, PLL_BYTE_ALIGNMENT, numberOfCategories * 20 * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ [ 26%] Building C object pll/CMakeFiles/pll.dir/newick.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/newick.c.o -c /build/iqtree-1.6.12+dfsg/pll/newick.c In file included from /build/iqtree-1.6.12+dfsg/pll/models.c:53: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 27%] Building C object pll/CMakeFiles/pll.dir/newviewGenericSpecial.c.o In file included from /build/iqtree-1.6.12+dfsg/pll/newick.c:36: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/newviewGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c [ 27%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdistancedatum.cpp [ 27%] Building C object pll/CMakeFiles/pll.dir/genericParallelization.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/genericParallelization.c.o -c /build/iqtree-1.6.12+dfsg/pll/genericParallelization.c In file included from /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:32: /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'pllNewviewIterative': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:2763:13: note: in expansion of macro 'rax_posix_memalign' 2763 | rax_posix_memalign ((void **)&x3_start, PLL_BYTE_ALIGNMENT, requiredLength); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:2792:17: note: in expansion of macro 'rax_posix_memalign' 2792 | rax_posix_memalign ((void **)&ex3, PLL_BYTE_ALIGNMENT, requiredExpLength); | ^~~~~~~~~~~~~~~~~~ [ 28%] Building C object pll/CMakeFiles/pll.dir/optimizeModel.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/optimizeModel.c.o -c /build/iqtree-1.6.12+dfsg/pll/optimizeModel.c /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'newviewAncestralIterative': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:3730:11: note: in expansion of macro 'rax_posix_memalign' 3730 | rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'pllGetCLV': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:3800:3: note: in expansion of macro 'rax_posix_memalign' 3800 | rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof (double)); | ^~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdistancesblock.cpp [ 30%] Building C object pll/CMakeFiles/pll.dir/parsePartition.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/parsePartition.c.o -c /build/iqtree-1.6.12+dfsg/pll/parsePartition.c In file included from /build/iqtree-1.6.12+dfsg/pll/genericParallelization.c:43: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 30%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsemptyblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsemptyblock.cpp In file included from /build/iqtree-1.6.12+dfsg/pll/optimizeModel.c:47: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/parsePartition.c:42: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 31%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsexception.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsexception.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsexception.cpp [ 31%] Building C object pll/CMakeFiles/pll.dir/queue.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/queue.c.o -c /build/iqtree-1.6.12+dfsg/pll/queue.c [ 32%] Building C object pll/CMakeFiles/pll.dir/randomTree.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/randomTree.c.o -c /build/iqtree-1.6.12+dfsg/pll/randomTree.c In file included from /build/iqtree-1.6.12+dfsg/pll/randomTree.c:37: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 32%] Building C object pll/CMakeFiles/pll.dir/recom.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/recom.c.o -c /build/iqtree-1.6.12+dfsg/pll/recom.c [ 33%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsreader.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsreader.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsreader.cpp [ 33%] Building CXX object ncl/CMakeFiles/ncl.dir/nxssetreader.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxssetreader.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxssetreader.cpp [ 34%] Building C object pll/CMakeFiles/pll.dir/restartHashTable.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/restartHashTable.c.o -c /build/iqtree-1.6.12+dfsg/pll/restartHashTable.c In file included from /build/iqtree-1.6.12+dfsg/pll/recom.c:43: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 35%] Building C object pll/CMakeFiles/pll.dir/searchAlgo.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/searchAlgo.c.o -c /build/iqtree-1.6.12+dfsg/pll/searchAlgo.c In file included from /build/iqtree-1.6.12+dfsg/pll/restartHashTable.c:47: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 35%] Building C object pll/CMakeFiles/pll.dir/ssort.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/ssort.c.o -c /build/iqtree-1.6.12+dfsg/pll/ssort.c In file included from /build/iqtree-1.6.12+dfsg/pll/searchAlgo.c:51: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 36%] Linking CXX static library libwhtest.a cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cmake -P CMakeFiles/whtest.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/whtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/whtest.dir/link.txt --verbose=1 [ 37%] Building C object pll/CMakeFiles/pll.dir/stack.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/stack.c.o -c /build/iqtree-1.6.12+dfsg/pll/stack.c /usr/bin/ar qc libwhtest.a CMakeFiles/whtest.dir/eigen.c.o CMakeFiles/whtest.dir/eigen_sym.c.o CMakeFiles/whtest.dir/random.c.o CMakeFiles/whtest.dir/weisslambda.c.o CMakeFiles/whtest.dir/weisslambda_sub.c.o CMakeFiles/whtest.dir/whtest.c.o CMakeFiles/whtest.dir/whtest_sub.c.o CMakeFiles/whtest.dir/whtest_wrapper.cpp.o /usr/bin/ranlib libwhtest.a [ 37%] Building C object pll/CMakeFiles/pll.dir/topologies.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/topologies.c.o -c /build/iqtree-1.6.12+dfsg/pll/topologies.c make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 37%] Built target whtest [ 38%] Building C object pll/CMakeFiles/pll.dir/trash.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/trash.c.o -c /build/iqtree-1.6.12+dfsg/pll/trash.c [ 39%] Building C object pll/CMakeFiles/pll.dir/treeIO.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/treeIO.c.o -c /build/iqtree-1.6.12+dfsg/pll/treeIO.c In file included from /build/iqtree-1.6.12+dfsg/pll/topologies.c:48: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 40%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsstring.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsstring.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsstring.cpp In file included from /build/iqtree-1.6.12+dfsg/pll/trash.c:48: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/treeIO.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 40%] Building C object pll/CMakeFiles/pll.dir/utils.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/utils.c.o -c /build/iqtree-1.6.12+dfsg/pll/utils.c [ 40%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstaxablock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstaxablock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstaxablock.cpp [ 41%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstoken.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstoken.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstoken.cpp [ 42%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstreesblock.cpp.o In file included from /build/iqtree-1.6.12+dfsg/pll/utils.c:70: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstreesblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstreesblock.cpp In file included from /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:16, from /build/iqtree-1.6.12+dfsg/pll/utils.c:70: /build/iqtree-1.6.12+dfsg/pll/utils.c: In function 'initializePartitionData': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:588:7: note: in expansion of macro 'rax_posix_memalign' 588 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->left), PLL_BYTE_ALIGNMENT, (size_t)pl->leftLength * (maxCategories + 1) * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:589:7: note: in expansion of macro 'rax_posix_memalign' 589 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->right), PLL_BYTE_ALIGNMENT, (size_t)pl->rightLength * (maxCategories + 1) * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:591:7: note: in expansion of macro 'rax_posix_memalign' 591 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV), PLL_BYTE_ALIGNMENT, (size_t)pl->evLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:597:7: note: in expansion of macro 'rax_posix_memalign' 597 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector), PLL_BYTE_ALIGNMENT, (size_t)pl->tipVectorLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:609:15: note: in expansion of macro 'rax_posix_memalign' 609 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV_LG4[k]), PLL_BYTE_ALIGNMENT, pl->evLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:613:15: note: in expansion of macro 'rax_posix_memalign' 613 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector_LG4[k]), PLL_BYTE_ALIGNMENT, pl->tipVectorLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:679:7: note: in expansion of macro 'rax_posix_memalign' 679 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->sumBuffer), PLL_BYTE_ALIGNMENT, width * | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:686:7: note: in expansion of macro 'rax_posix_memalign' 686 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->perSiteLikelihoods), PLL_BYTE_ALIGNMENT, width * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:716:7: note: in expansion of macro 'rax_posix_memalign' 716 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->ancestralBuffer), PLL_BYTE_ALIGNMENT, width * | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:736:7: note: in expansion of macro 'rax_posix_memalign' 736 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->wgt), PLL_BYTE_ALIGNMENT, width * sizeof(int)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:748:11: note: in expansion of macro 'rax_posix_memalign' 748 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->gapColumn),PLL_BYTE_ALIGNMENT, ((size_t)localTree->mxtips) * | ^~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msetsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/msetsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/msetsblock.cpp [ 43%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msplitsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/msplitsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/msplitsblock.cpp [ 44%] Building CXX object nclextra/CMakeFiles/nclextra.dir/modelsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/modelsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/modelsblock.cpp [ 45%] Linking CXX static library liblbfgsb.a cd /build/iqtree-1.6.12+dfsg/build.omp/lbfgsb && /usr/bin/cmake -P CMakeFiles/lbfgsb.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/lbfgsb && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgsb.dir/link.txt --verbose=1 /usr/bin/ar qc liblbfgsb.a CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o /usr/bin/ranlib liblbfgsb.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 45%] Built target lbfgsb make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/utils /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/utils /build/iqtree-1.6.12+dfsg/build.omp/utils/CMakeFiles/utils.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.omp/utils/CMakeFiles/utils.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/utils/CMakeFiles/utils.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/utils/CMakeFiles/utils.dir/depend.internal". Scanning dependencies of target utils make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 46%] Building CXX object utils/CMakeFiles/utils.dir/gzstream.cpp.o [ 46%] Building CXX object utils/CMakeFiles/utils.dir/optimization.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/gzstream.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/gzstream.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/optimization.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/optimization.cpp [ 46%] Building CXX object utils/CMakeFiles/utils.dir/eigendecomposition.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/eigendecomposition.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/eigendecomposition.cpp [ 47%] Building CXX object utils/CMakeFiles/utils.dir/stoprule.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/stoprule.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/stoprule.cpp [ 48%] Building CXX object utils/CMakeFiles/utils.dir/tools.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/tools.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/tools.cpp [ 48%] Building CXX object utils/CMakeFiles/utils.dir/pllnni.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/pllnni.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/pllnni.cpp [ 49%] Building CXX object utils/CMakeFiles/utils.dir/checkpoint.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/checkpoint.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/checkpoint.cpp [ 49%] Building CXX object utils/CMakeFiles/utils.dir/MPIHelper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/MPIHelper.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/MPIHelper.cpp [ 49%] Linking CXX static library libnclextra.a cd /build/iqtree-1.6.12+dfsg/build.omp/nclextra && /usr/bin/cmake -P CMakeFiles/nclextra.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/nclextra && /usr/bin/cmake -E cmake_link_script CMakeFiles/nclextra.dir/link.txt --verbose=1 /usr/bin/ar qc libnclextra.a CMakeFiles/nclextra.dir/mpdablock.cpp.o CMakeFiles/nclextra.dir/msetsblock.cpp.o CMakeFiles/nclextra.dir/msplitsblock.cpp.o CMakeFiles/nclextra.dir/modelsblock.cpp.o /usr/bin/ranlib libnclextra.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 49%] Built target nclextra make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pda /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/pda /build/iqtree-1.6.12+dfsg/build.omp/pda/CMakeFiles/pda.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.omp/pda/CMakeFiles/pda.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/pda/CMakeFiles/pda.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/pda/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/pda/CMakeFiles/pda.dir/depend.internal". Scanning dependencies of target pda make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 51%] Building CXX object pda/CMakeFiles/pda.dir/gurobiwrapper.cpp.o [ 51%] Building CXX object pda/CMakeFiles/pda.dir/circularnetwork.cpp.o [ 51%] Building CXX object pda/CMakeFiles/pda.dir/greedy.cpp.o [ 51%] Building CXX object pda/CMakeFiles/pda.dir/pdnetwork.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/circularnetwork.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/circularnetwork.cpp [ 51%] Building CXX object pda/CMakeFiles/pda.dir/split.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/greedy.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/greedy.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/gurobiwrapper.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/gurobiwrapper.cpp [ 52%] Building CXX object pda/CMakeFiles/pda.dir/hashsplitset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/hashsplitset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/hashsplitset.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdnetwork.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdnetwork.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/split.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/split.cpp [ 53%] Building CXX object pda/CMakeFiles/pda.dir/pruning.cpp.o [ 54%] Building CXX object pda/CMakeFiles/pda.dir/splitgraph.cpp.o [ 55%] Building CXX object pda/CMakeFiles/pda.dir/splitset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pruning.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pruning.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/splitgraph.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/splitgraph.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/splitset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/splitset.cpp [ 55%] Building C object pda/CMakeFiles/pda.dir/lpwrapper.c.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/lpwrapper.c.o -c /build/iqtree-1.6.12+dfsg/pda/lpwrapper.c [ 56%] Building CXX object pda/CMakeFiles/pda.dir/ecopd.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/ecopd.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/ecopd.cpp [ 56%] Building CXX object pda/CMakeFiles/pda.dir/graph.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/graph.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/graph.cpp [ 57%] Building CXX object pda/CMakeFiles/pda.dir/pdtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdtree.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdtree.cpp [ 57%] Building CXX object pda/CMakeFiles/pda.dir/pdtreeset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdtreeset.cpp [ 58%] Building CXX object pda/CMakeFiles/pda.dir/ecopdmtreeset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/ecopdmtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/ecopdmtreeset.cpp [ 59%] Linking C static library libpll.a cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cmake -P CMakeFiles/pll.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/pll && /usr/bin/cmake -E cmake_link_script CMakeFiles/pll.dir/link.txt --verbose=1 /usr/bin/ar qc libpll.a CMakeFiles/pll.dir/alignment.c.o CMakeFiles/pll.dir/bipartitionList.c.o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o CMakeFiles/pll.dir/fastDNAparsimony.c.o CMakeFiles/pll.dir/hardware.c.o CMakeFiles/pll.dir/hash.c.o CMakeFiles/pll.dir/lexer.c.o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o CMakeFiles/pll.dir/models.c.o CMakeFiles/pll.dir/newick.c.o CMakeFiles/pll.dir/newviewGenericSpecial.c.o CMakeFiles/pll.dir/genericParallelization.c.o CMakeFiles/pll.dir/optimizeModel.c.o CMakeFiles/pll.dir/parsePartition.c.o CMakeFiles/pll.dir/queue.c.o CMakeFiles/pll.dir/randomTree.c.o CMakeFiles/pll.dir/recom.c.o CMakeFiles/pll.dir/restartHashTable.c.o CMakeFiles/pll.dir/searchAlgo.c.o CMakeFiles/pll.dir/ssort.c.o CMakeFiles/pll.dir/stack.c.o CMakeFiles/pll.dir/topologies.c.o CMakeFiles/pll.dir/trash.c.o CMakeFiles/pll.dir/treeIO.c.o CMakeFiles/pll.dir/utils.c.o /usr/bin/ranlib libpll.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 59%] Built target pll [ 59%] Linking CXX static library libncl.a cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/cmake -P CMakeFiles/ncl.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/ncl && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncl.dir/link.txt --verbose=1 /usr/bin/ar qc libncl.a CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o CMakeFiles/ncl.dir/nxsblock.cpp.o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o CMakeFiles/ncl.dir/nxsdatablock.cpp.o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o CMakeFiles/ncl.dir/nxsexception.cpp.o CMakeFiles/ncl.dir/nxsreader.cpp.o CMakeFiles/ncl.dir/nxssetreader.cpp.o CMakeFiles/ncl.dir/nxsstring.cpp.o CMakeFiles/ncl.dir/nxstaxablock.cpp.o CMakeFiles/ncl.dir/nxstoken.cpp.o CMakeFiles/ncl.dir/nxstreesblock.cpp.o /usr/bin/ranlib libncl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 59%] Built target ncl make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/alignment /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/alignment /build/iqtree-1.6.12+dfsg/build.omp/alignment/CMakeFiles/alignment.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.omp/alignment/CMakeFiles/alignment.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/alignment/CMakeFiles/alignment.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/alignment/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/alignment/CMakeFiles/alignment.dir/depend.internal". Scanning dependencies of target alignment make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 60%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignmentpairwise.cpp [ 60%] Building CXX object alignment/CMakeFiles/alignment.dir/pattern.cpp.o [ 61%] Building CXX object alignment/CMakeFiles/alignment.dir/alignment.cpp.o [ 61%] Building CXX object alignment/CMakeFiles/alignment.dir/alignmentpairwise.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/pattern.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/pattern.cpp [ 62%] Building CXX object alignment/CMakeFiles/alignment.dir/maalignment.cpp.o [ 62%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignment.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/alignmentpairwise.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/alignmentpairwise.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/alignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/alignment.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/maalignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/maalignment.cpp [ 63%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignment.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignmentpairwiseplen.cpp /build/iqtree-1.6.12+dfsg/alignment/alignment.cpp:2925:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 2925 | void convert_range(const char *str, int &lower, int &upper, int &step_size, char* &endptr) throw (string) { | ^~~~~ [ 64%] Linking CXX static library libpda.a cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/cmake -P CMakeFiles/pda.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/pda && /usr/bin/cmake -E cmake_link_script CMakeFiles/pda.dir/link.txt --verbose=1 /usr/bin/ar qc libpda.a CMakeFiles/pda.dir/circularnetwork.cpp.o CMakeFiles/pda.dir/greedy.cpp.o CMakeFiles/pda.dir/gurobiwrapper.cpp.o CMakeFiles/pda.dir/hashsplitset.cpp.o CMakeFiles/pda.dir/pdnetwork.cpp.o CMakeFiles/pda.dir/pruning.cpp.o CMakeFiles/pda.dir/split.cpp.o CMakeFiles/pda.dir/splitgraph.cpp.o CMakeFiles/pda.dir/splitset.cpp.o CMakeFiles/pda.dir/lpwrapper.c.o CMakeFiles/pda.dir/ecopd.cpp.o CMakeFiles/pda.dir/graph.cpp.o CMakeFiles/pda.dir/pdtree.cpp.o CMakeFiles/pda.dir/pdtreeset.cpp.o CMakeFiles/pda.dir/ecopdmtreeset.cpp.o /usr/bin/ranlib libpda.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 64%] Built target pda [ 65%] Linking CXX static library libutils.a cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/cmake -P CMakeFiles/utils.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/utils.dir/link.txt --verbose=1 /usr/bin/ar qc libutils.a CMakeFiles/utils.dir/eigendecomposition.cpp.o CMakeFiles/utils.dir/gzstream.cpp.o CMakeFiles/utils.dir/optimization.cpp.o CMakeFiles/utils.dir/stoprule.cpp.o CMakeFiles/utils.dir/tools.cpp.o CMakeFiles/utils.dir/pllnni.cpp.o CMakeFiles/utils.dir/checkpoint.cpp.o CMakeFiles/utils.dir/MPIHelper.cpp.o /usr/bin/ranlib libutils.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 65%] Built target utils make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/model /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/model /build/iqtree-1.6.12+dfsg/build.omp/model/CMakeFiles/model.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.omp/model/CMakeFiles/model.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/model/CMakeFiles/model.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/model/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/model/CMakeFiles/model.dir/depend.internal". Scanning dependencies of target model make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 66%] Building CXX object model/CMakeFiles/model.dir/modeldna.cpp.o [ 66%] Building CXX object model/CMakeFiles/model.dir/modelmarkov.cpp.o [ 67%] Building CXX object model/CMakeFiles/model.dir/modelbin.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmarkov.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp [ 67%] Building CXX object model/CMakeFiles/model.dir/modelfactory.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelbin.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelbin.cpp [ 68%] Building CXX object model/CMakeFiles/model.dir/modelprotein.cpp.o [ 68%] Building CXX object model/CMakeFiles/model.dir/modelset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modeldna.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modeldna.cpp [ 69%] Building CXX object model/CMakeFiles/model.dir/partitionmodel.cpp.o [ 70%] Building CXX object model/CMakeFiles/model.dir/modelsubst.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelfactory.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp [ 71%] Building CXX object model/CMakeFiles/model.dir/rategamma.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelprotein.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp [ 71%] Building CXX object model/CMakeFiles/model.dir/rategammainvar.cpp.o [ 72%] Building CXX object model/CMakeFiles/model.dir/rateheterogeneity.cpp.o [ 72%] Building CXX object model/CMakeFiles/model.dir/partitionmodelplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelset.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelset.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelsubst.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelsubst.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/partitionmodel.cpp.o -c /build/iqtree-1.6.12+dfsg/model/partitionmodel.cpp [ 73%] Building CXX object model/CMakeFiles/model.dir/rateinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/partitionmodelplen.cpp.o -c /build/iqtree-1.6.12+dfsg/model/partitionmodelplen.cpp [ 73%] Building CXX object model/CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rategamma.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rategamma.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rategammainvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rategammainvar.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterogeneity.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterogeneity.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateinvar.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratemeyerdiscrete.cpp [ 74%] Building CXX object model/CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratemeyerhaeseler.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelprotein.h:23, from /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelset.h:23, from /build/iqtree-1.6.12+dfsg/model/modelset.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:651:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 651 | void ModelProtein::readRates(istream &in) throw(const char*, string) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:20: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:24: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:26: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:27: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:240:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 240 | void ModelDNA::readRates(string str) throw(const char*) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:30: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelbin.h:23, from /build/iqtree-1.6.12+dfsg/model/modelbin.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 74%] Building CXX object model/CMakeFiles/model.dir/ratekategory.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratekategory.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratekategory.cpp [ 75%] Building CXX object model/CMakeFiles/model.dir/ratefree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratefree.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratefree.cpp [ 76%] Building CXX object model/CMakeFiles/model.dir/ratefreeinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratefreeinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratefreeinvar.cpp [ 76%] Building CXX object model/CMakeFiles/model.dir/rateheterotachy.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterotachy.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterotachy.cpp /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:997:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 997 | void ModelMarkov::readRates(istream &in) throw(const char*, string) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1052:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1052 | void ModelMarkov::readRates(string str) throw(const char*) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1081:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1081 | void ModelMarkov::readStateFreq(istream &in) throw(const char*) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1095:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1095 | void ModelMarkov::readStateFreq(string str) throw(const char*) { | ^~~~~ [ 77%] Building CXX object model/CMakeFiles/model.dir/rateheterotachyinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterotachyinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterotachyinvar.cpp [ 77%] Building CXX object model/CMakeFiles/model.dir/modelcodon.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelcodon.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelcodon.cpp [ 77%] Building CXX object model/CMakeFiles/model.dir/modelmixture.cpp.o [ 78%] Building CXX object model/CMakeFiles/model.dir/modelmorphology.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmixture.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmorphology.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp [ 79%] Building CXX object model/CMakeFiles/model.dir/modelunrest.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelunrest.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelunrest.cpp [ 80%] Building CXX object model/CMakeFiles/model.dir/modelliemarkov.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelliemarkov.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelliemarkov.cpp [ 80%] Building CXX object model/CMakeFiles/model.dir/modelpomo.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelpomo.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp [ 81%] Building CXX object model/CMakeFiles/model.dir/modelpomomixture.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelpomomixture.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/model/ratefree.cpp:13: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 81%] Building CXX object model/CMakeFiles/model.dir/modelfactorymixlen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelfactorymixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelfactorymixlen.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:11, from /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:44:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 44 | void ModelMorphology::readRates(istream &in) throw(const char*, string) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:10: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:13: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelcodon.h:11, from /build/iqtree-1.6.12+dfsg/model/modelcodon.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelunrest.h:11, from /build/iqtree-1.6.12+dfsg/model/modelunrest.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.h:14, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.h:14, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp:1: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp:1: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactorymixlen.cpp:12: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelliemarkov.h:11, from /build/iqtree-1.6.12+dfsg/model/modelliemarkov.cpp:25: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 81%] Linking CXX static library libalignment.a cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/cmake -P CMakeFiles/alignment.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/alignment.dir/link.txt --verbose=1 /usr/bin/ar qc libalignment.a CMakeFiles/alignment.dir/pattern.cpp.o CMakeFiles/alignment.dir/alignment.cpp.o CMakeFiles/alignment.dir/alignmentpairwise.cpp.o CMakeFiles/alignment.dir/maalignment.cpp.o CMakeFiles/alignment.dir/superalignment.cpp.o CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o /usr/bin/ranlib libalignment.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 81%] Built target alignment [ 82%] Linking CXX static library libkernelsse.a /usr/bin/cmake -P CMakeFiles/kernelsse.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/kernelsse.dir/link.txt --verbose=1 /usr/bin/ar qc libkernelsse.a CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o /usr/bin/ranlib libkernelsse.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 82%] Built target kernelsse [ 83%] Linking CXX static library libmodel.a cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/cmake -P CMakeFiles/model.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/model && /usr/bin/cmake -E cmake_link_script CMakeFiles/model.dir/link.txt --verbose=1 /usr/bin/ar qc libmodel.a CMakeFiles/model.dir/modelmarkov.cpp.o CMakeFiles/model.dir/modelbin.cpp.o CMakeFiles/model.dir/modeldna.cpp.o CMakeFiles/model.dir/modelfactory.cpp.o CMakeFiles/model.dir/modelprotein.cpp.o CMakeFiles/model.dir/modelset.cpp.o CMakeFiles/model.dir/modelsubst.cpp.o CMakeFiles/model.dir/partitionmodel.cpp.o CMakeFiles/model.dir/partitionmodelplen.cpp.o CMakeFiles/model.dir/rategamma.cpp.o CMakeFiles/model.dir/rategammainvar.cpp.o CMakeFiles/model.dir/rateheterogeneity.cpp.o CMakeFiles/model.dir/rateinvar.cpp.o CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o CMakeFiles/model.dir/ratekategory.cpp.o CMakeFiles/model.dir/ratefree.cpp.o CMakeFiles/model.dir/ratefreeinvar.cpp.o CMakeFiles/model.dir/rateheterotachy.cpp.o CMakeFiles/model.dir/rateheterotachyinvar.cpp.o CMakeFiles/model.dir/modelcodon.cpp.o CMakeFiles/model.dir/modelmorphology.cpp.o CMakeFiles/model.dir/modelmixture.cpp.o CMakeFiles/model.dir/modelunrest.cpp.o CMakeFiles/model.dir/modelliemarkov.cpp.o CMakeFiles/model.dir/modelpomo.cpp.o CMakeFiles/model.dir/modelpomomixture.cpp.o CMakeFiles/model.dir/modelfactorymixlen.cpp.o /usr/bin/ranlib libmodel.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 83%] Built target model make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/tree /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/tree /build/iqtree-1.6.12+dfsg/build.omp/tree/CMakeFiles/tree.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.omp/tree/CMakeFiles/tree.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/tree/CMakeFiles/tree.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/tree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/tree/CMakeFiles/tree.dir/depend.internal". Scanning dependencies of target tree make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 84%] Building CXX object tree/CMakeFiles/tree.dir/mtreeset.cpp.o [ 84%] Building CXX object tree/CMakeFiles/tree.dir/mexttree.cpp.o [ 85%] Building CXX object tree/CMakeFiles/tree.dir/iqtree.cpp.o [ 86%] Building CXX object tree/CMakeFiles/tree.dir/constrainttree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mtreeset.cpp [ 86%] Building CXX object tree/CMakeFiles/tree.dir/candidateset.cpp.o [ 86%] Building CXX object tree/CMakeFiles/tree.dir/matree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/constrainttree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/constrainttree.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/candidateset.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/candidateset.cpp [ 87%] Building CXX object tree/CMakeFiles/tree.dir/memslot.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/iqtree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/iqtree.cpp [ 88%] Building CXX object tree/CMakeFiles/tree.dir/mtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/matree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/matree.cpp [ 88%] Building CXX object tree/CMakeFiles/tree.dir/phylonode.cpp.o [ 88%] Building CXX object tree/CMakeFiles/tree.dir/ncbitree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mexttree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mexttree.cpp [ 89%] Building CXX object tree/CMakeFiles/tree.dir/phylonodemixlen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/memslot.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/memslot.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mtree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mtree.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/ncbitree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/ncbitree.cpp [ 90%] Building CXX object tree/CMakeFiles/tree.dir/phylosupertree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylonode.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylonode.cpp [ 90%] Building CXX object tree/CMakeFiles/tree.dir/phylosupertreeplen.cpp.o [ 91%] Building CXX object tree/CMakeFiles/tree.dir/phylotree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylonodemixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylonodemixlen.cpp [ 91%] Building CXX object tree/CMakeFiles/tree.dir/phylotreemixlen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylosupertree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylosupertree.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylosupertreeplen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylosupertreeplen.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp [ 92%] Building CXX object tree/CMakeFiles/tree.dir/node.cpp.o [ 93%] Building CXX object tree/CMakeFiles/tree.dir/phylotreepars.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/node.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/node.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreemixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreemixlen.cpp cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreepars.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreepars.cpp [ 94%] Building CXX object tree/CMakeFiles/tree.dir/phylotreesse.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreesse.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreesse.cpp In file included from /build/iqtree-1.6.12+dfsg/tree/iqtree.cpp:29: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp:34: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 94%] Building CXX object tree/CMakeFiles/tree.dir/quartet.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/quartet.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/quartet.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/tree/phylotreemixlen.cpp:12: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 95%] Building CXX object tree/CMakeFiles/tree.dir/supernode.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/supernode.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/supernode.cpp In file included from /build/iqtree-1.6.12+dfsg/tree/phylotreesse.cpp:35: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 95%] Building CXX object tree/CMakeFiles/tree.dir/tinatree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/tinatree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/tinatree.cpp [ 96%] Building CXX object tree/CMakeFiles/tree.dir/parstree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/parstree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/parstree.cpp /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp: In member function 'virtual int PhyloTree::getNumLhCat(SiteLoglType)': /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp:1202:1: warning: control reaches end of non-void function [-Wreturn-type] 1202 | } | ^ [ 97%] Linking CXX static library libtree.a cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/cmake -P CMakeFiles/tree.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.omp/tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree.dir/link.txt --verbose=1 /usr/bin/ar qc libtree.a CMakeFiles/tree.dir/constrainttree.cpp.o CMakeFiles/tree.dir/candidateset.cpp.o CMakeFiles/tree.dir/iqtree.cpp.o CMakeFiles/tree.dir/matree.cpp.o CMakeFiles/tree.dir/memslot.cpp.o CMakeFiles/tree.dir/mexttree.cpp.o CMakeFiles/tree.dir/mtree.cpp.o CMakeFiles/tree.dir/mtreeset.cpp.o CMakeFiles/tree.dir/ncbitree.cpp.o CMakeFiles/tree.dir/node.cpp.o CMakeFiles/tree.dir/phylonode.cpp.o CMakeFiles/tree.dir/phylonodemixlen.cpp.o CMakeFiles/tree.dir/phylosupertree.cpp.o CMakeFiles/tree.dir/phylosupertreeplen.cpp.o CMakeFiles/tree.dir/phylotree.cpp.o CMakeFiles/tree.dir/phylotreemixlen.cpp.o CMakeFiles/tree.dir/phylotreepars.cpp.o CMakeFiles/tree.dir/phylotreesse.cpp.o CMakeFiles/tree.dir/quartet.cpp.o CMakeFiles/tree.dir/supernode.cpp.o CMakeFiles/tree.dir/tinatree.cpp.o CMakeFiles/tree.dir/parstree.cpp.o /usr/bin/ranlib libtree.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 97%] Built target tree make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/iqtree.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/iqtree.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/iqtree.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/iqtree.dir/depend.internal". Scanning dependencies of target iqtree make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 98%] Building CXX object CMakeFiles/iqtree.dir/main/phylotesting.cpp.o [100%] Building CXX object CMakeFiles/iqtree.dir/main/main.cpp.o [100%] Building CXX object CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o [100%] Building CXX object CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/main.cpp.o -c /build/iqtree-1.6.12+dfsg/main/main.cpp /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o -c /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/phylotesting.cpp.o -c /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.omp -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o -c /build/iqtree-1.6.12+dfsg/obsolete/parsmultistate.cpp /build/iqtree-1.6.12+dfsg/main/main.cpp:232:58: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 232 | out << " " << 8*sizeof(void*) << "-bit" << " built " << __DATE__; | ^~~~~~~~ /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:862:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 862 | << "." << iqtree_VERSION_PATCH << " built " << __DATE__ << endl | ^~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:21: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:35: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:36: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:30: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:33: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:44: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp: In function 'std::string getSeqTypeName(SeqType)': /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:164:1: warning: control reaches end of non-void function [-Wreturn-type] 164 | } | ^ [100%] Linking CXX executable iqtree /usr/bin/cmake -E cmake_link_script CMakeFiles/iqtree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -Wl,-z,relro -Wl,-z,now -rdynamic -rdynamic CMakeFiles/iqtree.dir/main/main.cpp.o CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o CMakeFiles/iqtree.dir/main/phylotesting.cpp.o CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o -o iqtree -L/build/iqtree-1.6.12+dfsg/lib32 -Wl,-rpath,/build/iqtree-1.6.12+dfsg/lib32: pll/libpll.a ncl/libncl.a nclextra/libnclextra.a utils/libutils.a pda/libpda.a lbfgsb/liblbfgsb.a whtest/libwhtest.a sprng/libsprng.a vectorclass/libvectorclass.a model/libmodel.a gsl/libgsl.a alignment/libalignment.a tree/libtree.a -lm libkernelsse.a nclextra/libnclextra.a pll/libpll.a model/libmodel.a utils/libutils.a lbfgsb/liblbfgsb.a -lz alignment/libalignment.a ncl/libncl.a gsl/libgsl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [100%] Built target iqtree make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles 0 make[2]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' # restore the old naming to avoid name space conflict with serial build if [ -x build.omp/iqtree ] ; then mv build.omp/iqtree build.omp/iqtree-omp ; fi dh_auto_build -Bbuild.serial cd build.serial && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' /usr/bin/cmake -S/build/iqtree-1.6.12+dfsg -B/build/iqtree-1.6.12+dfsg/build.serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles /build/iqtree-1.6.12+dfsg/build.serial//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/depend make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/depend make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/depend make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/gsl /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/gsl /build/iqtree-1.6.12+dfsg/build.serial/gsl/CMakeFiles/gsl.dir/DependInfo.cmake --color= make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/depend make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/ncl /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/ncl /build/iqtree-1.6.12+dfsg/build.serial/ncl/CMakeFiles/ncl.dir/DependInfo.cmake --color= make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/lbfgsb /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/lbfgsb /build/iqtree-1.6.12+dfsg/build.serial/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pll /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/pll /build/iqtree-1.6.12+dfsg/build.serial/pll/CMakeFiles/pll.dir/DependInfo.cmake --color= make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/kernelsse.dir/DependInfo.cmake --color= make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/nclextra /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/nclextra /build/iqtree-1.6.12+dfsg/build.serial/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/whtest /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/whtest /build/iqtree-1.6.12+dfsg/build.serial/whtest/CMakeFiles/whtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/sprng /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/sprng /build/iqtree-1.6.12+dfsg/build.serial/sprng/CMakeFiles/sprng.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/vectorclass /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/vectorclass /build/iqtree-1.6.12+dfsg/build.serial/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.serial/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/lbfgsb/CMakeFiles/lbfgsb.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/lbfgsb/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/lbfgsb/CMakeFiles/lbfgsb.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/pll/CMakeFiles/pll.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/pll/CMakeFiles/pll.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/pll/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/pll/CMakeFiles/pll.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/kernelsse.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/kernelsse.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/kernelsse.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/vectorclass/CMakeFiles/vectorclass.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/vectorclass/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/vectorclass/CMakeFiles/vectorclass.dir/depend.internal". Scanning dependencies of target lbfgsb Dependee "/build/iqtree-1.6.12+dfsg/build.serial/sprng/CMakeFiles/sprng.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/sprng/CMakeFiles/sprng.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/sprng/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/sprng/CMakeFiles/sprng.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/gsl/CMakeFiles/gsl.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/gsl/CMakeFiles/gsl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/gsl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/gsl/CMakeFiles/gsl.dir/depend.internal". Scanning dependencies of target vectorclass make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/build Dependee "/build/iqtree-1.6.12+dfsg/build.serial/ncl/CMakeFiles/ncl.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/ncl/CMakeFiles/ncl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/ncl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/ncl/CMakeFiles/ncl.dir/depend.internal". Scanning dependencies of target gsl make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' Dependee "/build/iqtree-1.6.12+dfsg/build.serial/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/nclextra/CMakeFiles/nclextra.dir/depend.internal". make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' Dependee "/build/iqtree-1.6.12+dfsg/build.serial/nclextra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/nclextra/CMakeFiles/nclextra.dir/depend.internal". make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/build Dependee "/build/iqtree-1.6.12+dfsg/build.serial/whtest/CMakeFiles/whtest.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/whtest/CMakeFiles/whtest.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/whtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/whtest/CMakeFiles/whtest.dir/depend.internal". Scanning dependencies of target sprng make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' Scanning dependencies of target nclextra [ 1%] Building CXX object vectorclass/CMakeFiles/vectorclass.dir/instrset_detect.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/vectorclass && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/vectorclass.dir/instrset_detect.cpp.o -c /build/iqtree-1.6.12+dfsg/vectorclass/instrset_detect.cpp [ 2%] Building CXX object gsl/CMakeFiles/gsl.dir/binomial_tpe.cpp.o Scanning dependencies of target ncl make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/binomial_tpe.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/binomial_tpe.cpp make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/build [ 2%] Building CXX object lbfgsb/CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/build cd /build/iqtree-1.6.12+dfsg/build.serial/lbfgsb && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o -c /build/iqtree-1.6.12+dfsg/lbfgsb/lbfgsb_new.cpp Scanning dependencies of target whtest make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 3%] Building CXX object gsl/CMakeFiles/gsl.dir/pow_int.cpp.o [ 3%] Building CXX object gsl/CMakeFiles/gsl.dir/multinomial.cpp.o make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/pow_int.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/pow_int.cpp [ 4%] Building CXX object gsl/CMakeFiles/gsl.dir/gauss.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/multinomial.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/multinomial.cpp [ 4%] Building CXX object gsl/CMakeFiles/gsl.dir/gaussinv.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gauss.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gauss.cpp [ 4%] Building C object sprng/CMakeFiles/sprng.dir/lcg64.c.o make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' Scanning dependencies of target pll [ 5%] Building CXX object gsl/CMakeFiles/gsl.dir/gausspdf.cpp.o Scanning dependencies of target kernelsse cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gaussinv.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gaussinv.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/lcg64.c.o -c /build/iqtree-1.6.12+dfsg/sprng/lcg64.c make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/build [ 6%] Building C object sprng/CMakeFiles/sprng.dir/makeseed.c.o make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gausspdf.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gausspdf.cpp make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/build [ 7%] Building C object sprng/CMakeFiles/sprng.dir/memory.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/makeseed.c.o -c /build/iqtree-1.6.12+dfsg/sprng/makeseed.c [ 7%] Building C object sprng/CMakeFiles/sprng.dir/store.c.o [ 8%] Building C object sprng/CMakeFiles/sprng.dir/primes-lcg64.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/memory.c.o -c /build/iqtree-1.6.12+dfsg/sprng/memory.c cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/store.c.o -c /build/iqtree-1.6.12+dfsg/sprng/store.c make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/primes-lcg64.c.o -c /build/iqtree-1.6.12+dfsg/sprng/primes-lcg64.c [ 9%] Building CXX object nclextra/CMakeFiles/nclextra.dir/mpdablock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/mpdablock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/mpdablock.cpp [ 10%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o [ 11%] Building C object whtest/CMakeFiles/whtest.dir/eigen.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/eigen.c.o -c /build/iqtree-1.6.12+dfsg/whtest/eigen.c cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsassumptionsblock.cpp [ 12%] Building CXX object CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o [ 12%] Building C object pll/CMakeFiles/pll.dir/alignment.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/alignment.c.o -c /build/iqtree-1.6.12+dfsg/pll/alignment.c /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylokernelsse.cpp [ 12%] Building C object sprng/CMakeFiles/sprng.dir/checkid.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/checkid.c.o -c /build/iqtree-1.6.12+dfsg/sprng/checkid.c [ 13%] Building C object pll/CMakeFiles/pll.dir/bipartitionList.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/bipartitionList.c.o -c /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c In file included from /build/iqtree-1.6.12+dfsg/pll/alignment.c:40: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 13%] Building C object pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/evaluateGenericSpecial.c [ 13%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsblock.cpp [ 14%] Building C object pll/CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o [ 15%] Building C object pll/CMakeFiles/pll.dir/fastDNAparsimony.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c [ 15%] Building C object whtest/CMakeFiles/whtest.dir/eigen_sym.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/fastDNAparsimony.c.o -c /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/eigen_sym.c.o -c /build/iqtree-1.6.12+dfsg/whtest/eigen_sym.c In file included from /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 15%] Linking CXX static library libvectorclass.a cd /build/iqtree-1.6.12+dfsg/build.serial/vectorclass && /usr/bin/cmake -P CMakeFiles/vectorclass.dir/cmake_clean_target.cmake In file included from /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:29: /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c: In function 'insertHashRF': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:332:3: note: in expansion of macro 'rax_posix_memalign' 332 | rax_posix_memalign ((void **)&(e->bitVector), PLL_BYTE_ALIGNMENT, (size_t)vectorLength * sizeof(unsigned int)); | ^~~~~~~~~~~~~~~~~~ cd /build/iqtree-1.6.12+dfsg/build.serial/vectorclass && /usr/bin/cmake -E cmake_link_script CMakeFiles/vectorclass.dir/link.txt --verbose=1 [ 16%] Building C object whtest/CMakeFiles/whtest.dir/random.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/random.c.o -c /build/iqtree-1.6.12+dfsg/whtest/random.c /usr/bin/ar qc libvectorclass.a CMakeFiles/vectorclass.dir/instrset_detect.cpp.o /usr/bin/ranlib libvectorclass.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 17%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/weisslambda.c.o -c /build/iqtree-1.6.12+dfsg/whtest/weisslambda.c [ 17%] Building C object pll/CMakeFiles/pll.dir/hardware.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/hardware.c.o -c /build/iqtree-1.6.12+dfsg/pll/hardware.c [ 18%] Linking C static library libsprng.a [ 18%] Built target vectorclass cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cmake -P CMakeFiles/sprng.dir/cmake_clean_target.cmake [ 19%] Building C object pll/CMakeFiles/pll.dir/hash.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/hash.c.o -c /build/iqtree-1.6.12+dfsg/pll/hash.c cd /build/iqtree-1.6.12+dfsg/build.serial/sprng && /usr/bin/cmake -E cmake_link_script CMakeFiles/sprng.dir/link.txt --verbose=1 In file included from /build/iqtree-1.6.12+dfsg/pll/evaluateGenericSpecial.c:46: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 19%] Linking CXX static library libgsl.a cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/cmake -P CMakeFiles/gsl.dir/cmake_clean_target.cmake /usr/bin/ar qc libsprng.a CMakeFiles/sprng.dir/lcg64.c.o CMakeFiles/sprng.dir/makeseed.c.o CMakeFiles/sprng.dir/memory.c.o CMakeFiles/sprng.dir/store.c.o CMakeFiles/sprng.dir/primes-lcg64.c.o CMakeFiles/sprng.dir/checkid.c.o /usr/bin/ranlib libsprng.a In file included from /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:113: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ cd /build/iqtree-1.6.12+dfsg/build.serial/gsl && /usr/bin/cmake -E cmake_link_script CMakeFiles/gsl.dir/link.txt --verbose=1 In file included from /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:45: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/hardware.c: In function 'pll_probe_cpu': /build/iqtree-1.6.12+dfsg/pll/hardware.c:93:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf (fd, "%d", &id); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:29: /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c: In function 'compressDNA': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:1692:7: note: in expansion of macro 'rax_posix_memalign' 1692 | rax_posix_memalign ((void **) &(pr->partitionData[model]->parsVect), PLL_BYTE_ALIGNMENT, (size_t)compressedEntriesPadded * states * totalNodes * sizeof(parsimonyNumber)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:1768:3: note: in expansion of macro 'rax_posix_memalign' 1768 | rax_posix_memalign ((void **) &(tr->parsimonyScore), PLL_BYTE_ALIGNMENT, sizeof(unsigned int) * totalNodes); | ^~~~~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:31: /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRCAT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1175:3: note: in expansion of macro 'rax_posix_memalign' 1175 | rax_posix_memalign ((void **) &lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 4 * mxtips); | ^~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRGAMMA': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1017:3: note: in expansion of macro 'rax_posix_memalign' 1017 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 16 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRCATPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1326:3: note: in expansion of macro 'rax_posix_memalign' 1326 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 20 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRGAMMAPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:936:3: note: in expansion of macro 'rax_posix_memalign' 936 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 80 * mxtips); | ^~~~~~~~~~~~~~~~~~ /usr/bin/ar qc libgsl.a CMakeFiles/gsl.dir/binomial_tpe.cpp.o CMakeFiles/gsl.dir/multinomial.cpp.o CMakeFiles/gsl.dir/pow_int.cpp.o CMakeFiles/gsl.dir/gauss.cpp.o CMakeFiles/gsl.dir/gaussinv.cpp.o CMakeFiles/gsl.dir/gausspdf.cpp.o [ 19%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda_sub.c.o [ 19%] Built target sprng cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/weisslambda_sub.c.o -c /build/iqtree-1.6.12+dfsg/whtest/weisslambda_sub.c /usr/bin/ranlib libgsl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 20%] Building CXX object ncl/CMakeFiles/ncl.dir/nxscharactersblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxscharactersblock.cpp [ 20%] Built target gsl [ 20%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdatablock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdatablock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdatablock.cpp [ 20%] Building C object pll/CMakeFiles/pll.dir/lexer.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/lexer.c.o -c /build/iqtree-1.6.12+dfsg/pll/lexer.c [ 21%] Building C object pll/CMakeFiles/pll.dir/makenewzGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c [ 22%] Building C object pll/CMakeFiles/pll.dir/models.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/models.c.o -c /build/iqtree-1.6.12+dfsg/pll/models.c [ 22%] Building C object pll/CMakeFiles/pll.dir/newick.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/newick.c.o -c /build/iqtree-1.6.12+dfsg/pll/newick.c [ 23%] Building C object whtest/CMakeFiles/whtest.dir/whtest.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest.c.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest.c [ 24%] Building C object pll/CMakeFiles/pll.dir/newviewGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/newviewGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c In file included from /build/iqtree-1.6.12+dfsg/pll/newick.c:36: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:44: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:29: /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c: In function 'coreGTRCAT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:2699:3: note: in expansion of macro 'rax_posix_memalign' 2699 | rax_posix_memalign ((void **) &d_start, PLL_BYTE_ALIGNMENT, numberOfCategories * 4 * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c: In function 'coreGTRCATPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:3074:3: note: in expansion of macro 'rax_posix_memalign' 3074 | rax_posix_memalign ((void **)&d_start, PLL_BYTE_ALIGNMENT, numberOfCategories * 20 * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ [ 24%] Building C object whtest/CMakeFiles/whtest.dir/whtest_sub.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest_sub.c.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c In file included from /build/iqtree-1.6.12+dfsg/pll/models.c:53: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c: In function 'ReadData': In file included from /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c:205:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fscanf ( ifp, "%c", &c ); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c:221:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 221 | fscanf ( ifp, "%c", &c ); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:32: /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'pllNewviewIterative': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:2763:13: note: in expansion of macro 'rax_posix_memalign' 2763 | rax_posix_memalign ((void **)&x3_start, PLL_BYTE_ALIGNMENT, requiredLength); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:2792:17: note: in expansion of macro 'rax_posix_memalign' 2792 | rax_posix_memalign ((void **)&ex3, PLL_BYTE_ALIGNMENT, requiredExpLength); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'newviewAncestralIterative': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:3730:11: note: in expansion of macro 'rax_posix_memalign' 3730 | rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'pllGetCLV': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:3800:3: note: in expansion of macro 'rax_posix_memalign' 3800 | rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof (double)); | ^~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object whtest/CMakeFiles/whtest.dir/whtest_wrapper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest_wrapper.cpp.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest_wrapper.cpp [ 25%] Building C object pll/CMakeFiles/pll.dir/genericParallelization.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/genericParallelization.c.o -c /build/iqtree-1.6.12+dfsg/pll/genericParallelization.c In file included from /build/iqtree-1.6.12+dfsg/pll/genericParallelization.c:43: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 26%] Building C object pll/CMakeFiles/pll.dir/optimizeModel.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/optimizeModel.c.o -c /build/iqtree-1.6.12+dfsg/pll/optimizeModel.c In file included from /build/iqtree-1.6.12+dfsg/pll/optimizeModel.c:47: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 27%] Building C object pll/CMakeFiles/pll.dir/parsePartition.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/parsePartition.c.o -c /build/iqtree-1.6.12+dfsg/pll/parsePartition.c In file included from /build/iqtree-1.6.12+dfsg/pll/parsePartition.c:42: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 27%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msetsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/msetsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/msetsblock.cpp [ 28%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdiscretedatum.cpp [ 28%] Building C object pll/CMakeFiles/pll.dir/queue.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/queue.c.o -c /build/iqtree-1.6.12+dfsg/pll/queue.c [ 29%] Building C object pll/CMakeFiles/pll.dir/randomTree.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/randomTree.c.o -c /build/iqtree-1.6.12+dfsg/pll/randomTree.c [ 29%] Building C object pll/CMakeFiles/pll.dir/recom.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/recom.c.o -c /build/iqtree-1.6.12+dfsg/pll/recom.c In file included from /build/iqtree-1.6.12+dfsg/pll/randomTree.c:37: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/recom.c:43: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 30%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdiscretematrix.cpp [ 31%] Building C object pll/CMakeFiles/pll.dir/restartHashTable.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/restartHashTable.c.o -c /build/iqtree-1.6.12+dfsg/pll/restartHashTable.c [ 32%] Building C object pll/CMakeFiles/pll.dir/searchAlgo.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/searchAlgo.c.o -c /build/iqtree-1.6.12+dfsg/pll/searchAlgo.c In file included from /build/iqtree-1.6.12+dfsg/pll/restartHashTable.c:47: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 32%] Building C object pll/CMakeFiles/pll.dir/ssort.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/ssort.c.o -c /build/iqtree-1.6.12+dfsg/pll/ssort.c [ 33%] Building C object pll/CMakeFiles/pll.dir/stack.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/stack.c.o -c /build/iqtree-1.6.12+dfsg/pll/stack.c [ 33%] Building C object pll/CMakeFiles/pll.dir/topologies.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/topologies.c.o -c /build/iqtree-1.6.12+dfsg/pll/topologies.c In file included from /build/iqtree-1.6.12+dfsg/pll/searchAlgo.c:51: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 34%] Building C object pll/CMakeFiles/pll.dir/trash.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/trash.c.o -c /build/iqtree-1.6.12+dfsg/pll/trash.c In file included from /build/iqtree-1.6.12+dfsg/pll/topologies.c:48: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 35%] Building C object pll/CMakeFiles/pll.dir/treeIO.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/treeIO.c.o -c /build/iqtree-1.6.12+dfsg/pll/treeIO.c In file included from /build/iqtree-1.6.12+dfsg/pll/trash.c:48: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 35%] Building C object pll/CMakeFiles/pll.dir/utils.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/utils.c.o -c /build/iqtree-1.6.12+dfsg/pll/utils.c [ 35%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdistancedatum.cpp In file included from /build/iqtree-1.6.12+dfsg/pll/treeIO.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/utils.c:70: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:16, from /build/iqtree-1.6.12+dfsg/pll/utils.c:70: /build/iqtree-1.6.12+dfsg/pll/utils.c: In function 'initializePartitionData': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:588:7: note: in expansion of macro 'rax_posix_memalign' 588 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->left), PLL_BYTE_ALIGNMENT, (size_t)pl->leftLength * (maxCategories + 1) * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:589:7: note: in expansion of macro 'rax_posix_memalign' 589 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->right), PLL_BYTE_ALIGNMENT, (size_t)pl->rightLength * (maxCategories + 1) * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:591:7: note: in expansion of macro 'rax_posix_memalign' 591 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV), PLL_BYTE_ALIGNMENT, (size_t)pl->evLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:597:7: note: in expansion of macro 'rax_posix_memalign' 597 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector), PLL_BYTE_ALIGNMENT, (size_t)pl->tipVectorLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:609:15: note: in expansion of macro 'rax_posix_memalign' 609 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV_LG4[k]), PLL_BYTE_ALIGNMENT, pl->evLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:613:15: note: in expansion of macro 'rax_posix_memalign' 613 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector_LG4[k]), PLL_BYTE_ALIGNMENT, pl->tipVectorLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:679:7: note: in expansion of macro 'rax_posix_memalign' 679 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->sumBuffer), PLL_BYTE_ALIGNMENT, width * | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:686:7: note: in expansion of macro 'rax_posix_memalign' 686 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->perSiteLikelihoods), PLL_BYTE_ALIGNMENT, width * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:716:7: note: in expansion of macro 'rax_posix_memalign' 716 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->ancestralBuffer), PLL_BYTE_ALIGNMENT, width * | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:736:7: note: in expansion of macro 'rax_posix_memalign' 736 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->wgt), PLL_BYTE_ALIGNMENT, width * sizeof(int)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:748:11: note: in expansion of macro 'rax_posix_memalign' 748 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->gapColumn),PLL_BYTE_ALIGNMENT, ((size_t)localTree->mxtips) * | ^~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdistancesblock.cpp [ 37%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msplitsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/msplitsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/msplitsblock.cpp [ 38%] Building CXX object nclextra/CMakeFiles/nclextra.dir/modelsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/modelsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/modelsblock.cpp [ 38%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsemptyblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsemptyblock.cpp [ 39%] Linking CXX static library libwhtest.a cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cmake -P CMakeFiles/whtest.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/whtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/whtest.dir/link.txt --verbose=1 /usr/bin/ar qc libwhtest.a CMakeFiles/whtest.dir/eigen.c.o CMakeFiles/whtest.dir/eigen_sym.c.o CMakeFiles/whtest.dir/random.c.o CMakeFiles/whtest.dir/weisslambda.c.o CMakeFiles/whtest.dir/weisslambda_sub.c.o CMakeFiles/whtest.dir/whtest.c.o CMakeFiles/whtest.dir/whtest_sub.c.o CMakeFiles/whtest.dir/whtest_wrapper.cpp.o /usr/bin/ranlib libwhtest.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 39%] Built target whtest [ 40%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsexception.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsexception.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsexception.cpp [ 41%] Building CXX object ncl/CMakeFiles/ncl.dir/nxssetreader.cpp.o [ 41%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsreader.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxssetreader.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxssetreader.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsreader.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsreader.cpp [ 42%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsstring.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsstring.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsstring.cpp [ 42%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstaxablock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstaxablock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstaxablock.cpp [ 43%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstoken.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstoken.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstoken.cpp [ 44%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstreesblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstreesblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstreesblock.cpp [ 45%] Linking CXX static library liblbfgsb.a cd /build/iqtree-1.6.12+dfsg/build.serial/lbfgsb && /usr/bin/cmake -P CMakeFiles/lbfgsb.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/lbfgsb && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgsb.dir/link.txt --verbose=1 /usr/bin/ar qc liblbfgsb.a CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o /usr/bin/ranlib liblbfgsb.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 45%] Built target lbfgsb make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/utils /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/utils /build/iqtree-1.6.12+dfsg/build.serial/utils/CMakeFiles/utils.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.serial/utils/CMakeFiles/utils.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/utils/CMakeFiles/utils.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/utils/CMakeFiles/utils.dir/depend.internal". Scanning dependencies of target utils make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 45%] Building CXX object utils/CMakeFiles/utils.dir/optimization.cpp.o [ 45%] Building CXX object utils/CMakeFiles/utils.dir/eigendecomposition.cpp.o [ 46%] Building CXX object utils/CMakeFiles/utils.dir/gzstream.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/eigendecomposition.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/eigendecomposition.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/optimization.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/optimization.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/gzstream.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/gzstream.cpp [ 47%] Building CXX object utils/CMakeFiles/utils.dir/stoprule.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/stoprule.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/stoprule.cpp [ 48%] Building CXX object utils/CMakeFiles/utils.dir/tools.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/tools.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/tools.cpp [ 48%] Building CXX object utils/CMakeFiles/utils.dir/pllnni.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/pllnni.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/pllnni.cpp [ 49%] Building CXX object utils/CMakeFiles/utils.dir/checkpoint.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/checkpoint.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/checkpoint.cpp [ 49%] Building CXX object utils/CMakeFiles/utils.dir/MPIHelper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/MPIHelper.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/MPIHelper.cpp [ 49%] Linking CXX static library libnclextra.a cd /build/iqtree-1.6.12+dfsg/build.serial/nclextra && /usr/bin/cmake -P CMakeFiles/nclextra.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/nclextra && /usr/bin/cmake -E cmake_link_script CMakeFiles/nclextra.dir/link.txt --verbose=1 /usr/bin/ar qc libnclextra.a CMakeFiles/nclextra.dir/mpdablock.cpp.o CMakeFiles/nclextra.dir/msetsblock.cpp.o CMakeFiles/nclextra.dir/msplitsblock.cpp.o CMakeFiles/nclextra.dir/modelsblock.cpp.o /usr/bin/ranlib libnclextra.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 49%] Built target nclextra make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pda /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/pda /build/iqtree-1.6.12+dfsg/build.serial/pda/CMakeFiles/pda.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.serial/pda/CMakeFiles/pda.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/pda/CMakeFiles/pda.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/pda/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/pda/CMakeFiles/pda.dir/depend.internal". Scanning dependencies of target pda make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 49%] Building CXX object pda/CMakeFiles/pda.dir/greedy.cpp.o [ 50%] Building CXX object pda/CMakeFiles/pda.dir/circularnetwork.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/greedy.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/greedy.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/circularnetwork.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/circularnetwork.cpp [ 51%] Building CXX object pda/CMakeFiles/pda.dir/gurobiwrapper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/gurobiwrapper.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/gurobiwrapper.cpp [ 52%] Building CXX object pda/CMakeFiles/pda.dir/hashsplitset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/hashsplitset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/hashsplitset.cpp [ 52%] Building CXX object pda/CMakeFiles/pda.dir/pdnetwork.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdnetwork.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdnetwork.cpp [ 53%] Building CXX object pda/CMakeFiles/pda.dir/pruning.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pruning.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pruning.cpp [ 53%] Building CXX object pda/CMakeFiles/pda.dir/split.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/split.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/split.cpp [ 54%] Building CXX object pda/CMakeFiles/pda.dir/splitgraph.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/splitgraph.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/splitgraph.cpp [ 55%] Building CXX object pda/CMakeFiles/pda.dir/splitset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/splitset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/splitset.cpp [ 55%] Building C object pda/CMakeFiles/pda.dir/lpwrapper.c.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/lpwrapper.c.o -c /build/iqtree-1.6.12+dfsg/pda/lpwrapper.c [ 56%] Building CXX object pda/CMakeFiles/pda.dir/ecopd.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/ecopd.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/ecopd.cpp [ 56%] Building CXX object pda/CMakeFiles/pda.dir/graph.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/graph.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/graph.cpp [ 57%] Building CXX object pda/CMakeFiles/pda.dir/pdtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdtree.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdtree.cpp [ 57%] Building CXX object pda/CMakeFiles/pda.dir/pdtreeset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdtreeset.cpp [ 58%] Building CXX object pda/CMakeFiles/pda.dir/ecopdmtreeset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/ecopdmtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/ecopdmtreeset.cpp [ 59%] Linking C static library libpll.a cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cmake -P CMakeFiles/pll.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/pll && /usr/bin/cmake -E cmake_link_script CMakeFiles/pll.dir/link.txt --verbose=1 /usr/bin/ar qc libpll.a CMakeFiles/pll.dir/alignment.c.o CMakeFiles/pll.dir/bipartitionList.c.o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o CMakeFiles/pll.dir/fastDNAparsimony.c.o CMakeFiles/pll.dir/hardware.c.o CMakeFiles/pll.dir/hash.c.o CMakeFiles/pll.dir/lexer.c.o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o CMakeFiles/pll.dir/models.c.o CMakeFiles/pll.dir/newick.c.o CMakeFiles/pll.dir/newviewGenericSpecial.c.o CMakeFiles/pll.dir/genericParallelization.c.o CMakeFiles/pll.dir/optimizeModel.c.o CMakeFiles/pll.dir/parsePartition.c.o CMakeFiles/pll.dir/queue.c.o CMakeFiles/pll.dir/randomTree.c.o CMakeFiles/pll.dir/recom.c.o CMakeFiles/pll.dir/restartHashTable.c.o CMakeFiles/pll.dir/searchAlgo.c.o CMakeFiles/pll.dir/ssort.c.o CMakeFiles/pll.dir/stack.c.o CMakeFiles/pll.dir/topologies.c.o CMakeFiles/pll.dir/trash.c.o CMakeFiles/pll.dir/treeIO.c.o CMakeFiles/pll.dir/utils.c.o /usr/bin/ranlib libpll.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 59%] Built target pll [ 59%] Linking CXX static library libncl.a cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/cmake -P CMakeFiles/ncl.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/ncl && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncl.dir/link.txt --verbose=1 /usr/bin/ar qc libncl.a CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o CMakeFiles/ncl.dir/nxsblock.cpp.o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o CMakeFiles/ncl.dir/nxsdatablock.cpp.o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o CMakeFiles/ncl.dir/nxsexception.cpp.o CMakeFiles/ncl.dir/nxsreader.cpp.o CMakeFiles/ncl.dir/nxssetreader.cpp.o CMakeFiles/ncl.dir/nxsstring.cpp.o CMakeFiles/ncl.dir/nxstaxablock.cpp.o CMakeFiles/ncl.dir/nxstoken.cpp.o CMakeFiles/ncl.dir/nxstreesblock.cpp.o /usr/bin/ranlib libncl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 59%] Built target ncl make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/alignment /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/alignment /build/iqtree-1.6.12+dfsg/build.serial/alignment/CMakeFiles/alignment.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.serial/alignment/CMakeFiles/alignment.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/alignment/CMakeFiles/alignment.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/alignment/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/alignment/CMakeFiles/alignment.dir/depend.internal". Scanning dependencies of target alignment make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 60%] Building CXX object alignment/CMakeFiles/alignment.dir/alignmentpairwise.cpp.o [ 60%] Building CXX object alignment/CMakeFiles/alignment.dir/alignment.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/alignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/alignment.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/alignmentpairwise.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/alignmentpairwise.cpp [ 60%] Building CXX object alignment/CMakeFiles/alignment.dir/pattern.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/pattern.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/pattern.cpp [ 61%] Building CXX object alignment/CMakeFiles/alignment.dir/maalignment.cpp.o [ 61%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignment.cpp.o [ 62%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/maalignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/maalignment.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignment.cpp [ 63%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignmentpairwise.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignmentpairwiseplen.cpp /build/iqtree-1.6.12+dfsg/alignment/alignment.cpp:2925:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 2925 | void convert_range(const char *str, int &lower, int &upper, int &step_size, char* &endptr) throw (string) { | ^~~~~ [ 64%] Linking CXX static library libpda.a cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/cmake -P CMakeFiles/pda.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/pda && /usr/bin/cmake -E cmake_link_script CMakeFiles/pda.dir/link.txt --verbose=1 /usr/bin/ar qc libpda.a CMakeFiles/pda.dir/circularnetwork.cpp.o CMakeFiles/pda.dir/greedy.cpp.o CMakeFiles/pda.dir/gurobiwrapper.cpp.o CMakeFiles/pda.dir/hashsplitset.cpp.o CMakeFiles/pda.dir/pdnetwork.cpp.o CMakeFiles/pda.dir/pruning.cpp.o CMakeFiles/pda.dir/split.cpp.o CMakeFiles/pda.dir/splitgraph.cpp.o CMakeFiles/pda.dir/splitset.cpp.o CMakeFiles/pda.dir/lpwrapper.c.o CMakeFiles/pda.dir/ecopd.cpp.o CMakeFiles/pda.dir/graph.cpp.o CMakeFiles/pda.dir/pdtree.cpp.o CMakeFiles/pda.dir/pdtreeset.cpp.o CMakeFiles/pda.dir/ecopdmtreeset.cpp.o /usr/bin/ranlib libpda.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 64%] Built target pda [ 65%] Linking CXX static library libutils.a cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/cmake -P CMakeFiles/utils.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/utils.dir/link.txt --verbose=1 /usr/bin/ar qc libutils.a CMakeFiles/utils.dir/eigendecomposition.cpp.o CMakeFiles/utils.dir/gzstream.cpp.o CMakeFiles/utils.dir/optimization.cpp.o CMakeFiles/utils.dir/stoprule.cpp.o CMakeFiles/utils.dir/tools.cpp.o CMakeFiles/utils.dir/pllnni.cpp.o CMakeFiles/utils.dir/checkpoint.cpp.o CMakeFiles/utils.dir/MPIHelper.cpp.o /usr/bin/ranlib libutils.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 65%] Built target utils make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/model /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/model /build/iqtree-1.6.12+dfsg/build.serial/model/CMakeFiles/model.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.serial/model/CMakeFiles/model.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/model/CMakeFiles/model.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/model/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/model/CMakeFiles/model.dir/depend.internal". Scanning dependencies of target model make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 66%] Building CXX object model/CMakeFiles/model.dir/modeldna.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modeldna.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modeldna.cpp [ 67%] Building CXX object model/CMakeFiles/model.dir/modelbin.cpp.o [ 67%] Building CXX object model/CMakeFiles/model.dir/modelmarkov.cpp.o [ 67%] Building CXX object model/CMakeFiles/model.dir/modelfactory.cpp.o [ 68%] Building CXX object model/CMakeFiles/model.dir/modelprotein.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmarkov.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelbin.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelbin.cpp [ 68%] Building CXX object model/CMakeFiles/model.dir/modelset.cpp.o [ 70%] Building CXX object model/CMakeFiles/model.dir/modelsubst.cpp.o [ 70%] Building CXX object model/CMakeFiles/model.dir/rateheterogeneity.cpp.o [ 71%] Building CXX object model/CMakeFiles/model.dir/partitionmodel.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelfactory.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelprotein.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp [ 72%] Building CXX object model/CMakeFiles/model.dir/rategamma.cpp.o [ 72%] Building CXX object model/CMakeFiles/model.dir/partitionmodelplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelset.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelset.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelsubst.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelsubst.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/partitionmodel.cpp.o -c /build/iqtree-1.6.12+dfsg/model/partitionmodel.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/partitionmodelplen.cpp.o -c /build/iqtree-1.6.12+dfsg/model/partitionmodelplen.cpp [ 73%] Building CXX object model/CMakeFiles/model.dir/rateinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rategamma.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rategamma.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterogeneity.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterogeneity.cpp [ 73%] Building CXX object model/CMakeFiles/model.dir/rategammainvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateinvar.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rategammainvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rategammainvar.cpp [ 73%] Building CXX object model/CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o [ 74%] Building CXX object model/CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratemeyerdiscrete.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratemeyerhaeseler.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelset.h:23, from /build/iqtree-1.6.12+dfsg/model/modelset.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:20: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelbin.h:23, from /build/iqtree-1.6.12+dfsg/model/modelbin.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:240:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 240 | void ModelDNA::readRates(string str) throw(const char*) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelprotein.h:23, from /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:24: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:26: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:651:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 651 | void ModelProtein::readRates(istream &in) throw(const char*, string) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:27: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:30: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 74%] Building CXX object model/CMakeFiles/model.dir/ratekategory.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratekategory.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratekategory.cpp [ 75%] Building CXX object model/CMakeFiles/model.dir/ratefree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratefree.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratefree.cpp [ 76%] Building CXX object model/CMakeFiles/model.dir/ratefreeinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratefreeinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratefreeinvar.cpp [ 76%] Building CXX object model/CMakeFiles/model.dir/rateheterotachy.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterotachy.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterotachy.cpp [ 77%] Building CXX object model/CMakeFiles/model.dir/rateheterotachyinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterotachyinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterotachyinvar.cpp /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:997:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 997 | void ModelMarkov::readRates(istream &in) throw(const char*, string) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1052:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1052 | void ModelMarkov::readRates(string str) throw(const char*) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1081:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1081 | void ModelMarkov::readStateFreq(istream &in) throw(const char*) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1095:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1095 | void ModelMarkov::readStateFreq(string str) throw(const char*) { | ^~~~~ [ 77%] Building CXX object model/CMakeFiles/model.dir/modelcodon.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelcodon.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelcodon.cpp [ 78%] Building CXX object model/CMakeFiles/model.dir/modelmorphology.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmorphology.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp [ 78%] Building CXX object model/CMakeFiles/model.dir/modelmixture.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmixture.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp [ 79%] Building CXX object model/CMakeFiles/model.dir/modelunrest.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelunrest.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelunrest.cpp [ 80%] Building CXX object model/CMakeFiles/model.dir/modelliemarkov.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelliemarkov.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelliemarkov.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/model/ratefree.cpp:13: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 80%] Building CXX object model/CMakeFiles/model.dir/modelpomo.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelpomo.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp [ 81%] Building CXX object model/CMakeFiles/model.dir/modelpomomixture.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelpomomixture.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp [ 81%] Building CXX object model/CMakeFiles/model.dir/modelfactorymixlen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelfactorymixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelfactorymixlen.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:11, from /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:44:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 44 | void ModelMorphology::readRates(istream &in) throw(const char*, string) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelcodon.h:11, from /build/iqtree-1.6.12+dfsg/model/modelcodon.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:10: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:13: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelunrest.h:11, from /build/iqtree-1.6.12+dfsg/model/modelunrest.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp:1: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp:1: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.h:14, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.h:14, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelliemarkov.h:11, from /build/iqtree-1.6.12+dfsg/model/modelliemarkov.cpp:25: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactorymixlen.cpp:12: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 81%] Linking CXX static library libalignment.a cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/cmake -P CMakeFiles/alignment.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/alignment.dir/link.txt --verbose=1 /usr/bin/ar qc libalignment.a CMakeFiles/alignment.dir/pattern.cpp.o CMakeFiles/alignment.dir/alignment.cpp.o CMakeFiles/alignment.dir/alignmentpairwise.cpp.o CMakeFiles/alignment.dir/maalignment.cpp.o CMakeFiles/alignment.dir/superalignment.cpp.o CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o /usr/bin/ranlib libalignment.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 81%] Built target alignment [ 82%] Linking CXX static library libkernelsse.a /usr/bin/cmake -P CMakeFiles/kernelsse.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/kernelsse.dir/link.txt --verbose=1 /usr/bin/ar qc libkernelsse.a CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o /usr/bin/ranlib libkernelsse.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 82%] Built target kernelsse [ 83%] Linking CXX static library libmodel.a cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/cmake -P CMakeFiles/model.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/model && /usr/bin/cmake -E cmake_link_script CMakeFiles/model.dir/link.txt --verbose=1 /usr/bin/ar qc libmodel.a CMakeFiles/model.dir/modelmarkov.cpp.o CMakeFiles/model.dir/modelbin.cpp.o CMakeFiles/model.dir/modeldna.cpp.o CMakeFiles/model.dir/modelfactory.cpp.o CMakeFiles/model.dir/modelprotein.cpp.o CMakeFiles/model.dir/modelset.cpp.o CMakeFiles/model.dir/modelsubst.cpp.o CMakeFiles/model.dir/partitionmodel.cpp.o CMakeFiles/model.dir/partitionmodelplen.cpp.o CMakeFiles/model.dir/rategamma.cpp.o CMakeFiles/model.dir/rategammainvar.cpp.o CMakeFiles/model.dir/rateheterogeneity.cpp.o CMakeFiles/model.dir/rateinvar.cpp.o CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o CMakeFiles/model.dir/ratekategory.cpp.o CMakeFiles/model.dir/ratefree.cpp.o CMakeFiles/model.dir/ratefreeinvar.cpp.o CMakeFiles/model.dir/rateheterotachy.cpp.o CMakeFiles/model.dir/rateheterotachyinvar.cpp.o CMakeFiles/model.dir/modelcodon.cpp.o CMakeFiles/model.dir/modelmorphology.cpp.o CMakeFiles/model.dir/modelmixture.cpp.o CMakeFiles/model.dir/modelunrest.cpp.o CMakeFiles/model.dir/modelliemarkov.cpp.o CMakeFiles/model.dir/modelpomo.cpp.o CMakeFiles/model.dir/modelpomomixture.cpp.o CMakeFiles/model.dir/modelfactorymixlen.cpp.o /usr/bin/ranlib libmodel.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 83%] Built target model make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/tree /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/tree /build/iqtree-1.6.12+dfsg/build.serial/tree/CMakeFiles/tree.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.serial/tree/CMakeFiles/tree.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/tree/CMakeFiles/tree.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/tree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/tree/CMakeFiles/tree.dir/depend.internal". Scanning dependencies of target tree make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 84%] Building CXX object tree/CMakeFiles/tree.dir/constrainttree.cpp.o [ 84%] Building CXX object tree/CMakeFiles/tree.dir/matree.cpp.o [ 85%] Building CXX object tree/CMakeFiles/tree.dir/iqtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/constrainttree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/constrainttree.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/iqtree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/iqtree.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/matree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/matree.cpp [ 85%] Building CXX object tree/CMakeFiles/tree.dir/ncbitree.cpp.o [ 85%] Building CXX object tree/CMakeFiles/tree.dir/candidateset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/ncbitree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/ncbitree.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/candidateset.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/candidateset.cpp [ 86%] Building CXX object tree/CMakeFiles/tree.dir/memslot.cpp.o [ 87%] Building CXX object tree/CMakeFiles/tree.dir/mtreeset.cpp.o [ 87%] Building CXX object tree/CMakeFiles/tree.dir/mexttree.cpp.o [ 88%] Building CXX object tree/CMakeFiles/tree.dir/mtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/memslot.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/memslot.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mexttree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mexttree.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mtree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mtree.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mtreeset.cpp [ 89%] Building CXX object tree/CMakeFiles/tree.dir/phylonode.cpp.o [ 89%] Building CXX object tree/CMakeFiles/tree.dir/phylonodemixlen.cpp.o [ 90%] Building CXX object tree/CMakeFiles/tree.dir/node.cpp.o [ 91%] Building CXX object tree/CMakeFiles/tree.dir/phylosupertree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylonodemixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylonodemixlen.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/node.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/node.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylonode.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylonode.cpp [ 92%] Building CXX object tree/CMakeFiles/tree.dir/phylotree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylosupertree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylosupertree.cpp [ 92%] Building CXX object tree/CMakeFiles/tree.dir/phylosupertreeplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp [ 92%] Building CXX object tree/CMakeFiles/tree.dir/phylotreemixlen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreemixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreemixlen.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylosupertreeplen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylosupertreeplen.cpp [ 93%] Building CXX object tree/CMakeFiles/tree.dir/phylotreepars.cpp.o [ 94%] Building CXX object tree/CMakeFiles/tree.dir/phylotreesse.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreepars.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreepars.cpp cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreesse.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreesse.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/tree/phylotreemixlen.cpp:12: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/tree/phylotreesse.cpp:35: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/tree/iqtree.cpp:29: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 94%] Building CXX object tree/CMakeFiles/tree.dir/quartet.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/quartet.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/quartet.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp:34: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 95%] Building CXX object tree/CMakeFiles/tree.dir/supernode.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/supernode.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/supernode.cpp [ 95%] Building CXX object tree/CMakeFiles/tree.dir/tinatree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/tinatree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/tinatree.cpp [ 96%] Building CXX object tree/CMakeFiles/tree.dir/parstree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/parstree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/parstree.cpp /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp: In member function 'virtual int PhyloTree::getNumLhCat(SiteLoglType)': /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp:1202:1: warning: control reaches end of non-void function [-Wreturn-type] 1202 | } | ^ [ 97%] Linking CXX static library libtree.a cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/cmake -P CMakeFiles/tree.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.serial/tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree.dir/link.txt --verbose=1 /usr/bin/ar qc libtree.a CMakeFiles/tree.dir/constrainttree.cpp.o CMakeFiles/tree.dir/candidateset.cpp.o CMakeFiles/tree.dir/iqtree.cpp.o CMakeFiles/tree.dir/matree.cpp.o CMakeFiles/tree.dir/memslot.cpp.o CMakeFiles/tree.dir/mexttree.cpp.o CMakeFiles/tree.dir/mtree.cpp.o CMakeFiles/tree.dir/mtreeset.cpp.o CMakeFiles/tree.dir/ncbitree.cpp.o CMakeFiles/tree.dir/node.cpp.o CMakeFiles/tree.dir/phylonode.cpp.o CMakeFiles/tree.dir/phylonodemixlen.cpp.o CMakeFiles/tree.dir/phylosupertree.cpp.o CMakeFiles/tree.dir/phylosupertreeplen.cpp.o CMakeFiles/tree.dir/phylotree.cpp.o CMakeFiles/tree.dir/phylotreemixlen.cpp.o CMakeFiles/tree.dir/phylotreepars.cpp.o CMakeFiles/tree.dir/phylotreesse.cpp.o CMakeFiles/tree.dir/quartet.cpp.o CMakeFiles/tree.dir/supernode.cpp.o CMakeFiles/tree.dir/tinatree.cpp.o CMakeFiles/tree.dir/parstree.cpp.o /usr/bin/ranlib libtree.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 97%] Built target tree make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/iqtree.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/iqtree.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/iqtree.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/iqtree.dir/depend.internal". Scanning dependencies of target iqtree make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 98%] Building CXX object CMakeFiles/iqtree.dir/main/main.cpp.o [ 99%] Building CXX object CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o [ 99%] Building CXX object CMakeFiles/iqtree.dir/main/phylotesting.cpp.o /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/main.cpp.o -c /build/iqtree-1.6.12+dfsg/main/main.cpp [100%] Building CXX object CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o -c /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/phylotesting.cpp.o -c /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/build/iqtree-1.6.12+dfsg/build.serial -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o -c /build/iqtree-1.6.12+dfsg/obsolete/parsmultistate.cpp /build/iqtree-1.6.12+dfsg/main/main.cpp:232:58: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 232 | out << " " << 8*sizeof(void*) << "-bit" << " built " << __DATE__; | ^~~~~~~~ /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:862:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 862 | << "." << iqtree_VERSION_PATCH << " built " << __DATE__ << endl | ^~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:35: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:21: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:36: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:30: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:44: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:33: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp: In function 'std::string getSeqTypeName(SeqType)': /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:164:1: warning: control reaches end of non-void function [-Wreturn-type] 164 | } | ^ [100%] Linking CXX executable iqtree /usr/bin/cmake -E cmake_link_script CMakeFiles/iqtree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -Wl,-z,relro -Wl,-z,now -rdynamic -rdynamic CMakeFiles/iqtree.dir/main/main.cpp.o CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o CMakeFiles/iqtree.dir/main/phylotesting.cpp.o CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o -o iqtree -L/build/iqtree-1.6.12+dfsg/lib32 -Wl,-rpath,/build/iqtree-1.6.12+dfsg/lib32: pll/libpll.a ncl/libncl.a nclextra/libnclextra.a utils/libutils.a pda/libpda.a lbfgsb/liblbfgsb.a whtest/libwhtest.a sprng/libsprng.a vectorclass/libvectorclass.a model/libmodel.a gsl/libgsl.a alignment/libalignment.a tree/libtree.a -lm libkernelsse.a nclextra/libnclextra.a pll/libpll.a model/libmodel.a utils/libutils.a lbfgsb/liblbfgsb.a -lz alignment/libalignment.a ncl/libncl.a gsl/libgsl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [100%] Built target iqtree make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles 0 make[2]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' # restore the old naming to avoid name space conflict with serial build if [ -x build.omp/iqtree ] ; then mv build.omp/iqtree build.omp/iqtree-omp ; fi dh_auto_build -Bbuild.mpi cd build.mpi && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' /usr/bin/cmake -S/build/iqtree-1.6.12+dfsg -B/build/iqtree-1.6.12+dfsg/build.mpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles /build/iqtree-1.6.12+dfsg/build.mpi//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/depend make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/depend make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/depend make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/gsl /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/gsl /build/iqtree-1.6.12+dfsg/build.mpi/gsl/CMakeFiles/gsl.dir/DependInfo.cmake --color= make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/depend make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/ncl /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/ncl /build/iqtree-1.6.12+dfsg/build.mpi/ncl/CMakeFiles/ncl.dir/DependInfo.cmake --color= make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/lbfgsb /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb /build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pll /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/pll /build/iqtree-1.6.12+dfsg/build.mpi/pll/CMakeFiles/pll.dir/DependInfo.cmake --color= make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/kernelsse.dir/DependInfo.cmake --color= make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/nclextra /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/nclextra /build/iqtree-1.6.12+dfsg/build.mpi/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/whtest /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/whtest /build/iqtree-1.6.12+dfsg/build.mpi/whtest/CMakeFiles/whtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/sprng /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/sprng /build/iqtree-1.6.12+dfsg/build.mpi/sprng/CMakeFiles/sprng.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/vectorclass /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/vectorclass /build/iqtree-1.6.12+dfsg/build.mpi/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/gsl/CMakeFiles/gsl.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/gsl/CMakeFiles/gsl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/gsl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/gsl/CMakeFiles/gsl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb/CMakeFiles/lbfgsb.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb/CMakeFiles/lbfgsb.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/pll/CMakeFiles/pll.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/pll/CMakeFiles/pll.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/pll/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/pll/CMakeFiles/pll.dir/depend.internal". Scanning dependencies of target gsl Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/nclextra/CMakeFiles/nclextra.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/nclextra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/nclextra/CMakeFiles/nclextra.dir/depend.internal". make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' Scanning dependencies of target lbfgsb Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/sprng/CMakeFiles/sprng.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/sprng/CMakeFiles/sprng.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/sprng/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/sprng/CMakeFiles/sprng.dir/depend.internal". make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/build Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/whtest/CMakeFiles/whtest.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/whtest/CMakeFiles/whtest.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/whtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/whtest/CMakeFiles/whtest.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/vectorclass/CMakeFiles/vectorclass.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/vectorclass/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/vectorclass/CMakeFiles/vectorclass.dir/depend.internal". make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/build Scanning dependencies of target vectorclass make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/ncl/CMakeFiles/ncl.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/ncl/CMakeFiles/ncl.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/ncl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/ncl/CMakeFiles/ncl.dir/depend.internal". make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/build Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/kernelsse.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/kernelsse.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/kernelsse.dir/depend.internal". Scanning dependencies of target sprng make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' Scanning dependencies of target nclextra make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 0%] Building CXX object lbfgsb/CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o [ 0%] Building CXX object gsl/CMakeFiles/gsl.dir/multinomial.cpp.o [ 1%] Building CXX object gsl/CMakeFiles/gsl.dir/pow_int.cpp.o [ 2%] Building CXX object gsl/CMakeFiles/gsl.dir/gauss.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o -c /build/iqtree-1.6.12+dfsg/lbfgsb/lbfgsb_new.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/multinomial.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/multinomial.cpp [ 2%] Building CXX object gsl/CMakeFiles/gsl.dir/gaussinv.cpp.o [ 3%] Building CXX object gsl/CMakeFiles/gsl.dir/binomial_tpe.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/pow_int.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/pow_int.cpp [ 4%] Building C object sprng/CMakeFiles/sprng.dir/makeseed.c.o Scanning dependencies of target ncl cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/binomial_tpe.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/binomial_tpe.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/makeseed.c.o -c /build/iqtree-1.6.12+dfsg/sprng/makeseed.c cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gauss.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gauss.cpp [ 5%] Building CXX object gsl/CMakeFiles/gsl.dir/gausspdf.cpp.o make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/build [ 5%] Building C object sprng/CMakeFiles/sprng.dir/lcg64.c.o [ 6%] Building CXX object vectorclass/CMakeFiles/vectorclass.dir/instrset_detect.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gaussinv.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gaussinv.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -o CMakeFiles/gsl.dir/gausspdf.cpp.o -c /build/iqtree-1.6.12+dfsg/gsl/gausspdf.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/vectorclass && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/vectorclass.dir/instrset_detect.cpp.o -c /build/iqtree-1.6.12+dfsg/vectorclass/instrset_detect.cpp [ 7%] Building C object sprng/CMakeFiles/sprng.dir/memory.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/lcg64.c.o -c /build/iqtree-1.6.12+dfsg/sprng/lcg64.c make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/memory.c.o -c /build/iqtree-1.6.12+dfsg/sprng/memory.c [ 8%] Building CXX object nclextra/CMakeFiles/nclextra.dir/mpdablock.cpp.o [ 8%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msetsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/mpdablock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/mpdablock.cpp [ 8%] Building C object sprng/CMakeFiles/sprng.dir/store.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/msetsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/msetsblock.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/store.c.o -c /build/iqtree-1.6.12+dfsg/sprng/store.c Scanning dependencies of target whtest make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' Scanning dependencies of target kernelsse make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 9%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsassumptionsblock.cpp [ 10%] Building C object whtest/CMakeFiles/whtest.dir/eigen.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/eigen.c.o -c /build/iqtree-1.6.12+dfsg/whtest/eigen.c Scanning dependencies of target pll [ 11%] Building CXX object CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/build /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylokernelsse.cpp make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 11%] Building C object pll/CMakeFiles/pll.dir/alignment.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/alignment.c.o -c /build/iqtree-1.6.12+dfsg/pll/alignment.c [ 12%] Building C object sprng/CMakeFiles/sprng.dir/primes-lcg64.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/primes-lcg64.c.o -c /build/iqtree-1.6.12+dfsg/sprng/primes-lcg64.c [ 12%] Building C object sprng/CMakeFiles/sprng.dir/checkid.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/sprng.dir/checkid.c.o -c /build/iqtree-1.6.12+dfsg/sprng/checkid.c In file included from /build/iqtree-1.6.12+dfsg/pll/alignment.c:40: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 13%] Building C object pll/CMakeFiles/pll.dir/bipartitionList.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/bipartitionList.c.o -c /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c [ 13%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsblock.cpp [ 14%] Building CXX object ncl/CMakeFiles/ncl.dir/nxscharactersblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxscharactersblock.cpp [ 14%] Building C object pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/evaluateGenericSpecial.c [ 14%] Building C object whtest/CMakeFiles/whtest.dir/eigen_sym.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/eigen_sym.c.o -c /build/iqtree-1.6.12+dfsg/whtest/eigen_sym.c [ 14%] Linking CXX static library libvectorclass.a cd /build/iqtree-1.6.12+dfsg/build.mpi/vectorclass && /usr/bin/cmake -P CMakeFiles/vectorclass.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/vectorclass && /usr/bin/cmake -E cmake_link_script CMakeFiles/vectorclass.dir/link.txt --verbose=1 [ 15%] Building CXX object nclextra/CMakeFiles/nclextra.dir/msplitsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/msplitsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/msplitsblock.cpp [ 16%] Building C object whtest/CMakeFiles/whtest.dir/random.c.o /usr/bin/ar qc libvectorclass.a CMakeFiles/vectorclass.dir/instrset_detect.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/random.c.o -c /build/iqtree-1.6.12+dfsg/whtest/random.c /usr/bin/ranlib libvectorclass.a [ 17%] Building CXX object nclextra/CMakeFiles/nclextra.dir/modelsblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/nclextra && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/nclextra.dir/modelsblock.cpp.o -c /build/iqtree-1.6.12+dfsg/nclextra/modelsblock.cpp make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' In file included from /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 17%] Built target vectorclass In file included from /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:29: /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c: In function 'insertHashRF': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/bipartitionList.c:332:3: note: in expansion of macro 'rax_posix_memalign' 332 | rax_posix_memalign ((void **)&(e->bitVector), PLL_BYTE_ALIGNMENT, (size_t)vectorLength * sizeof(unsigned int)); | ^~~~~~~~~~~~~~~~~~ [ 18%] Linking C static library libsprng.a cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cmake -P CMakeFiles/sprng.dir/cmake_clean_target.cmake [ 18%] Linking CXX static library libgsl.a cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/cmake -P CMakeFiles/gsl.dir/cmake_clean_target.cmake [ 19%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/weisslambda.c.o -c /build/iqtree-1.6.12+dfsg/whtest/weisslambda.c cd /build/iqtree-1.6.12+dfsg/build.mpi/sprng && /usr/bin/cmake -E cmake_link_script CMakeFiles/sprng.dir/link.txt --verbose=1 cd /build/iqtree-1.6.12+dfsg/build.mpi/gsl && /usr/bin/cmake -E cmake_link_script CMakeFiles/gsl.dir/link.txt --verbose=1 In file included from /build/iqtree-1.6.12+dfsg/pll/evaluateGenericSpecial.c:46: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ /usr/bin/ar qc libsprng.a CMakeFiles/sprng.dir/lcg64.c.o CMakeFiles/sprng.dir/makeseed.c.o CMakeFiles/sprng.dir/memory.c.o CMakeFiles/sprng.dir/store.c.o CMakeFiles/sprng.dir/primes-lcg64.c.o CMakeFiles/sprng.dir/checkid.c.o /usr/bin/ar qc libgsl.a CMakeFiles/gsl.dir/binomial_tpe.cpp.o CMakeFiles/gsl.dir/multinomial.cpp.o CMakeFiles/gsl.dir/pow_int.cpp.o CMakeFiles/gsl.dir/gauss.cpp.o CMakeFiles/gsl.dir/gaussinv.cpp.o CMakeFiles/gsl.dir/gausspdf.cpp.o /usr/bin/ranlib libsprng.a /usr/bin/ranlib libgsl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 19%] Built target sprng [ 19%] Built target gsl [ 19%] Building C object whtest/CMakeFiles/whtest.dir/weisslambda_sub.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/weisslambda_sub.c.o -c /build/iqtree-1.6.12+dfsg/whtest/weisslambda_sub.c [ 20%] Building C object whtest/CMakeFiles/whtest.dir/whtest.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest.c.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest.c [ 20%] Building C object whtest/CMakeFiles/whtest.dir/whtest_sub.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest_sub.c.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c: In function 'ReadData': /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c:205:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fscanf ( ifp, "%c", &c ); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/whtest/whtest_sub.c:221:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 221 | fscanf ( ifp, "%c", &c ); | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building C object pll/CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c [ 22%] Building CXX object whtest/CMakeFiles/whtest.dir/whtest_wrapper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/whtest.dir/whtest_wrapper.cpp.o -c /build/iqtree-1.6.12+dfsg/whtest/whtest_wrapper.cpp [ 23%] Building C object pll/CMakeFiles/pll.dir/fastDNAparsimony.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/fastDNAparsimony.c.o -c /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c In file included from /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:45: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:31: /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRCAT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1175:3: note: in expansion of macro 'rax_posix_memalign' 1175 | rax_posix_memalign ((void **) &lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 4 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRGAMMA': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1017:3: note: in expansion of macro 'rax_posix_memalign' 1017 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 16 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRCATPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:1326:3: note: in expansion of macro 'rax_posix_memalign' 1326 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 20 * mxtips); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c: In function 'evaluatePartialGTRGAMMAPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/evaluatePartialGenericSpecial.c:936:3: note: in expansion of macro 'rax_posix_memalign' 936 | rax_posix_memalign ((void **)&lVector, PLL_BYTE_ALIGNMENT, sizeof(double) * 80 * mxtips); | ^~~~~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:113: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:29: /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c: In function 'compressDNA': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:1692:7: note: in expansion of macro 'rax_posix_memalign' 1692 | rax_posix_memalign ((void **) &(pr->partitionData[model]->parsVect), PLL_BYTE_ALIGNMENT, (size_t)compressedEntriesPadded * states * totalNodes * sizeof(parsimonyNumber)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/fastDNAparsimony.c:1768:3: note: in expansion of macro 'rax_posix_memalign' 1768 | rax_posix_memalign ((void **) &(tr->parsimonyScore), PLL_BYTE_ALIGNMENT, sizeof(unsigned int) * totalNodes); | ^~~~~~~~~~~~~~~~~~ [ 23%] Building C object pll/CMakeFiles/pll.dir/hardware.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/hardware.c.o -c /build/iqtree-1.6.12+dfsg/pll/hardware.c [ 24%] Building C object pll/CMakeFiles/pll.dir/hash.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/hash.c.o -c /build/iqtree-1.6.12+dfsg/pll/hash.c /build/iqtree-1.6.12+dfsg/pll/hardware.c: In function 'pll_probe_cpu': /build/iqtree-1.6.12+dfsg/pll/hardware.c:93:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf (fd, "%d", &id); | ^~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building C object pll/CMakeFiles/pll.dir/lexer.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/lexer.c.o -c /build/iqtree-1.6.12+dfsg/pll/lexer.c [ 25%] Building C object pll/CMakeFiles/pll.dir/makenewzGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c [ 26%] Building C object pll/CMakeFiles/pll.dir/models.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/models.c.o -c /build/iqtree-1.6.12+dfsg/pll/models.c In file included from /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:44: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 26%] Building C object pll/CMakeFiles/pll.dir/newick.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/newick.c.o -c /build/iqtree-1.6.12+dfsg/pll/newick.c In file included from /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:29: /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c: In function 'coreGTRCAT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:2699:3: note: in expansion of macro 'rax_posix_memalign' 2699 | rax_posix_memalign ((void **) &d_start, PLL_BYTE_ALIGNMENT, numberOfCategories * 4 * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c: In function 'coreGTRCATPROT': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/makenewzGenericSpecial.c:3074:3: note: in expansion of macro 'rax_posix_memalign' 3074 | rax_posix_memalign ((void **)&d_start, PLL_BYTE_ALIGNMENT, numberOfCategories * 20 * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/newick.c:36: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/models.c:53: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 27%] Building C object pll/CMakeFiles/pll.dir/newviewGenericSpecial.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/newviewGenericSpecial.c.o -c /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c [ 27%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdatablock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdatablock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdatablock.cpp [ 27%] Building C object pll/CMakeFiles/pll.dir/genericParallelization.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/genericParallelization.c.o -c /build/iqtree-1.6.12+dfsg/pll/genericParallelization.c [ 28%] Building C object pll/CMakeFiles/pll.dir/optimizeModel.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/optimizeModel.c.o -c /build/iqtree-1.6.12+dfsg/pll/optimizeModel.c In file included from /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/genericParallelization.c:43: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:32: /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'pllNewviewIterative': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:2763:13: note: in expansion of macro 'rax_posix_memalign' 2763 | rax_posix_memalign ((void **)&x3_start, PLL_BYTE_ALIGNMENT, requiredLength); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:2792:17: note: in expansion of macro 'rax_posix_memalign' 2792 | rax_posix_memalign ((void **)&ex3, PLL_BYTE_ALIGNMENT, requiredExpLength); | ^~~~~~~~~~~~~~~~~~ [ 29%] Building C object pll/CMakeFiles/pll.dir/parsePartition.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/parsePartition.c.o -c /build/iqtree-1.6.12+dfsg/pll/parsePartition.c /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'newviewAncestralIterative': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:3730:11: note: in expansion of macro 'rax_posix_memalign' 3730 | rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c: In function 'pllGetCLV': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/newviewGenericSpecial.c:3800:3: note: in expansion of macro 'rax_posix_memalign' 3800 | rax_posix_memalign ((void **)&diagptable, PLL_BYTE_ALIGNMENT, categories * states * states * sizeof (double)); | ^~~~~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/optimizeModel.c:47: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 29%] Building C object pll/CMakeFiles/pll.dir/queue.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/queue.c.o -c /build/iqtree-1.6.12+dfsg/pll/queue.c In file included from /build/iqtree-1.6.12+dfsg/pll/parsePartition.c:42: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 30%] Building C object pll/CMakeFiles/pll.dir/randomTree.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/randomTree.c.o -c /build/iqtree-1.6.12+dfsg/pll/randomTree.c In file included from /build/iqtree-1.6.12+dfsg/pll/randomTree.c:37: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 30%] Building C object pll/CMakeFiles/pll.dir/recom.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/recom.c.o -c /build/iqtree-1.6.12+dfsg/pll/recom.c [ 31%] Building C object pll/CMakeFiles/pll.dir/restartHashTable.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/restartHashTable.c.o -c /build/iqtree-1.6.12+dfsg/pll/restartHashTable.c [ 32%] Building C object pll/CMakeFiles/pll.dir/searchAlgo.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/searchAlgo.c.o -c /build/iqtree-1.6.12+dfsg/pll/searchAlgo.c In file included from /build/iqtree-1.6.12+dfsg/pll/recom.c:43: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/restartHashTable.c:47: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 32%] Building C object pll/CMakeFiles/pll.dir/ssort.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/ssort.c.o -c /build/iqtree-1.6.12+dfsg/pll/ssort.c In file included from /build/iqtree-1.6.12+dfsg/pll/searchAlgo.c:51: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 33%] Building C object pll/CMakeFiles/pll.dir/stack.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/stack.c.o -c /build/iqtree-1.6.12+dfsg/pll/stack.c [ 33%] Building C object pll/CMakeFiles/pll.dir/topologies.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/topologies.c.o -c /build/iqtree-1.6.12+dfsg/pll/topologies.c [ 34%] Building C object pll/CMakeFiles/pll.dir/trash.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/trash.c.o -c /build/iqtree-1.6.12+dfsg/pll/trash.c In file included from /build/iqtree-1.6.12+dfsg/pll/topologies.c:48: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 35%] Building C object pll/CMakeFiles/pll.dir/treeIO.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/treeIO.c.o -c /build/iqtree-1.6.12+dfsg/pll/treeIO.c In file included from /build/iqtree-1.6.12+dfsg/pll/trash.c:48: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ [ 36%] Linking CXX static library libwhtest.a cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cmake -P CMakeFiles/whtest.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/whtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/whtest.dir/link.txt --verbose=1 In file included from /build/iqtree-1.6.12+dfsg/pll/treeIO.c:49: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ /usr/bin/ar qc libwhtest.a CMakeFiles/whtest.dir/eigen.c.o CMakeFiles/whtest.dir/eigen_sym.c.o CMakeFiles/whtest.dir/random.c.o CMakeFiles/whtest.dir/weisslambda.c.o CMakeFiles/whtest.dir/weisslambda_sub.c.o CMakeFiles/whtest.dir/whtest.c.o CMakeFiles/whtest.dir/whtest_sub.c.o CMakeFiles/whtest.dir/whtest_wrapper.cpp.o /usr/bin/ranlib libwhtest.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 36%] Building C object pll/CMakeFiles/pll.dir/utils.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pll.dir/utils.c.o -c /build/iqtree-1.6.12+dfsg/pll/utils.c [ 36%] Built target whtest [ 37%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdiscretedatum.cpp [ 38%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdiscretematrix.cpp In file included from /build/iqtree-1.6.12+dfsg/pll/utils.c:70: /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined 150 | extern __inline unsigned int bitcount_64_bit(uint64_t i); | ^~~~~~~~~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/pll/pllInternal.h:16, from /build/iqtree-1.6.12+dfsg/pll/utils.c:70: /build/iqtree-1.6.12+dfsg/pll/utils.c: In function 'initializePartitionData': /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:588:7: note: in expansion of macro 'rax_posix_memalign' 588 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->left), PLL_BYTE_ALIGNMENT, (size_t)pl->leftLength * (maxCategories + 1) * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:589:7: note: in expansion of macro 'rax_posix_memalign' 589 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->right), PLL_BYTE_ALIGNMENT, (size_t)pl->rightLength * (maxCategories + 1) * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:591:7: note: in expansion of macro 'rax_posix_memalign' 591 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV), PLL_BYTE_ALIGNMENT, (size_t)pl->evLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:597:7: note: in expansion of macro 'rax_posix_memalign' 597 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector), PLL_BYTE_ALIGNMENT, (size_t)pl->tipVectorLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:609:15: note: in expansion of macro 'rax_posix_memalign' 609 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->EV_LG4[k]), PLL_BYTE_ALIGNMENT, pl->evLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:613:15: note: in expansion of macro 'rax_posix_memalign' 613 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->tipVector_LG4[k]), PLL_BYTE_ALIGNMENT, pl->tipVectorLength * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:679:7: note: in expansion of macro 'rax_posix_memalign' 679 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->sumBuffer), PLL_BYTE_ALIGNMENT, width * | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:686:7: note: in expansion of macro 'rax_posix_memalign' 686 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->perSiteLikelihoods), PLL_BYTE_ALIGNMENT, width * sizeof(double)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:716:7: note: in expansion of macro 'rax_posix_memalign' 716 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->ancestralBuffer), PLL_BYTE_ALIGNMENT, width * | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:736:7: note: in expansion of macro 'rax_posix_memalign' 736 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->wgt), PLL_BYTE_ALIGNMENT, width * sizeof(int)); | ^~~~~~~~~~~~~~~~~~ /build/iqtree-1.6.12+dfsg/pll/mem_alloc.h:39:32: warning: ignoring return value of 'posix_memalign' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | #define rax_posix_memalign posix_memalign /build/iqtree-1.6.12+dfsg/pll/utils.c:748:11: note: in expansion of macro 'rax_posix_memalign' 748 | rax_posix_memalign ((void **)&(localPartitions->partitionData[model]->gapColumn),PLL_BYTE_ALIGNMENT, ((size_t)localTree->mxtips) * | ^~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdistancedatum.cpp [ 39%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsdistancesblock.cpp [ 39%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsemptyblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsemptyblock.cpp [ 40%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsexception.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsexception.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsexception.cpp [ 41%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsreader.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsreader.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsreader.cpp [ 41%] Building CXX object ncl/CMakeFiles/ncl.dir/nxssetreader.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxssetreader.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxssetreader.cpp [ 42%] Building CXX object ncl/CMakeFiles/ncl.dir/nxsstring.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxsstring.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxsstring.cpp [ 42%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstaxablock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstaxablock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstaxablock.cpp [ 43%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstoken.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstoken.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstoken.cpp [ 44%] Building CXX object ncl/CMakeFiles/ncl.dir/nxstreesblock.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/ncl.dir/nxstreesblock.cpp.o -c /build/iqtree-1.6.12+dfsg/ncl/nxstreesblock.cpp [ 45%] Linking CXX static library liblbfgsb.a cd /build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb && /usr/bin/cmake -P CMakeFiles/lbfgsb.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgsb.dir/link.txt --verbose=1 /usr/bin/ar qc liblbfgsb.a CMakeFiles/lbfgsb.dir/lbfgsb_new.cpp.o /usr/bin/ranlib liblbfgsb.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 45%] Built target lbfgsb make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/utils /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/utils /build/iqtree-1.6.12+dfsg/build.mpi/utils/CMakeFiles/utils.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/utils/CMakeFiles/utils.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/utils/CMakeFiles/utils.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/utils/CMakeFiles/utils.dir/depend.internal". Scanning dependencies of target utils make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 45%] Building CXX object utils/CMakeFiles/utils.dir/eigendecomposition.cpp.o [ 46%] Building CXX object utils/CMakeFiles/utils.dir/optimization.cpp.o [ 46%] Building CXX object utils/CMakeFiles/utils.dir/gzstream.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/eigendecomposition.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/eigendecomposition.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/optimization.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/optimization.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/gzstream.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/gzstream.cpp [ 46%] Linking CXX static library libnclextra.a cd /build/iqtree-1.6.12+dfsg/build.mpi/nclextra && /usr/bin/cmake -P CMakeFiles/nclextra.dir/cmake_clean_target.cmake [ 47%] Building CXX object utils/CMakeFiles/utils.dir/stoprule.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/stoprule.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/stoprule.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/nclextra && /usr/bin/cmake -E cmake_link_script CMakeFiles/nclextra.dir/link.txt --verbose=1 /usr/bin/ar qc libnclextra.a CMakeFiles/nclextra.dir/mpdablock.cpp.o CMakeFiles/nclextra.dir/msetsblock.cpp.o CMakeFiles/nclextra.dir/msplitsblock.cpp.o CMakeFiles/nclextra.dir/modelsblock.cpp.o /usr/bin/ranlib libnclextra.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 47%] Built target nclextra make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pda /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/pda /build/iqtree-1.6.12+dfsg/build.mpi/pda/CMakeFiles/pda.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/pda/CMakeFiles/pda.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/pda/CMakeFiles/pda.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/pda/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/pda/CMakeFiles/pda.dir/depend.internal". Scanning dependencies of target pda make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 48%] Building CXX object pda/CMakeFiles/pda.dir/circularnetwork.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/circularnetwork.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/circularnetwork.cpp [ 49%] Building CXX object utils/CMakeFiles/utils.dir/tools.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/tools.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/tools.cpp [ 49%] Building CXX object utils/CMakeFiles/utils.dir/pllnni.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/pllnni.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/pllnni.cpp [ 50%] Building CXX object utils/CMakeFiles/utils.dir/checkpoint.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/checkpoint.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/checkpoint.cpp [ 50%] Building CXX object pda/CMakeFiles/pda.dir/greedy.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/greedy.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/greedy.cpp [ 51%] Building CXX object pda/CMakeFiles/pda.dir/gurobiwrapper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/gurobiwrapper.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/gurobiwrapper.cpp [ 52%] Building CXX object pda/CMakeFiles/pda.dir/hashsplitset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/hashsplitset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/hashsplitset.cpp [ 52%] Building CXX object pda/CMakeFiles/pda.dir/pdnetwork.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdnetwork.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdnetwork.cpp [ 52%] Building CXX object utils/CMakeFiles/utils.dir/MPIHelper.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/utils.dir/MPIHelper.cpp.o -c /build/iqtree-1.6.12+dfsg/utils/MPIHelper.cpp [ 53%] Building CXX object pda/CMakeFiles/pda.dir/pruning.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pruning.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pruning.cpp [ 53%] Building CXX object pda/CMakeFiles/pda.dir/split.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/split.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/split.cpp [ 54%] Building CXX object pda/CMakeFiles/pda.dir/splitgraph.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/splitgraph.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/splitgraph.cpp [ 55%] Building CXX object pda/CMakeFiles/pda.dir/splitset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/splitset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/splitset.cpp [ 55%] Building C object pda/CMakeFiles/pda.dir/lpwrapper.c.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/cc -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/lpwrapper.c.o -c /build/iqtree-1.6.12+dfsg/pda/lpwrapper.c [ 56%] Building CXX object pda/CMakeFiles/pda.dir/ecopd.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/ecopd.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/ecopd.cpp [ 56%] Building CXX object pda/CMakeFiles/pda.dir/graph.cpp.o [ 57%] Building CXX object pda/CMakeFiles/pda.dir/pdtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/graph.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/graph.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdtree.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdtree.cpp [ 57%] Building CXX object pda/CMakeFiles/pda.dir/pdtreeset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/pdtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/pdtreeset.cpp [ 58%] Building CXX object pda/CMakeFiles/pda.dir/ecopdmtreeset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -D__SSE3 -msse3 -o CMakeFiles/pda.dir/ecopdmtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/pda/ecopdmtreeset.cpp [ 59%] Linking C static library libpll.a cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cmake -P CMakeFiles/pll.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/pll && /usr/bin/cmake -E cmake_link_script CMakeFiles/pll.dir/link.txt --verbose=1 /usr/bin/ar qc libpll.a CMakeFiles/pll.dir/alignment.c.o CMakeFiles/pll.dir/bipartitionList.c.o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o CMakeFiles/pll.dir/evaluatePartialGenericSpecial.c.o CMakeFiles/pll.dir/fastDNAparsimony.c.o CMakeFiles/pll.dir/hardware.c.o CMakeFiles/pll.dir/hash.c.o CMakeFiles/pll.dir/lexer.c.o CMakeFiles/pll.dir/makenewzGenericSpecial.c.o CMakeFiles/pll.dir/models.c.o CMakeFiles/pll.dir/newick.c.o CMakeFiles/pll.dir/newviewGenericSpecial.c.o CMakeFiles/pll.dir/genericParallelization.c.o CMakeFiles/pll.dir/optimizeModel.c.o CMakeFiles/pll.dir/parsePartition.c.o CMakeFiles/pll.dir/queue.c.o CMakeFiles/pll.dir/randomTree.c.o CMakeFiles/pll.dir/recom.c.o CMakeFiles/pll.dir/restartHashTable.c.o CMakeFiles/pll.dir/searchAlgo.c.o CMakeFiles/pll.dir/ssort.c.o CMakeFiles/pll.dir/stack.c.o CMakeFiles/pll.dir/topologies.c.o CMakeFiles/pll.dir/trash.c.o CMakeFiles/pll.dir/treeIO.c.o CMakeFiles/pll.dir/utils.c.o /usr/bin/ranlib libpll.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 59%] Built target pll [ 59%] Linking CXX static library libncl.a cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/cmake -P CMakeFiles/ncl.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/ncl && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncl.dir/link.txt --verbose=1 /usr/bin/ar qc libncl.a CMakeFiles/ncl.dir/nxsassumptionsblock.cpp.o CMakeFiles/ncl.dir/nxsblock.cpp.o CMakeFiles/ncl.dir/nxscharactersblock.cpp.o CMakeFiles/ncl.dir/nxsdatablock.cpp.o CMakeFiles/ncl.dir/nxsdiscretedatum.cpp.o CMakeFiles/ncl.dir/nxsdiscretematrix.cpp.o CMakeFiles/ncl.dir/nxsdistancedatum.cpp.o CMakeFiles/ncl.dir/nxsdistancesblock.cpp.o CMakeFiles/ncl.dir/nxsemptyblock.cpp.o CMakeFiles/ncl.dir/nxsexception.cpp.o CMakeFiles/ncl.dir/nxsreader.cpp.o CMakeFiles/ncl.dir/nxssetreader.cpp.o CMakeFiles/ncl.dir/nxsstring.cpp.o CMakeFiles/ncl.dir/nxstaxablock.cpp.o CMakeFiles/ncl.dir/nxstoken.cpp.o CMakeFiles/ncl.dir/nxstreesblock.cpp.o /usr/bin/ranlib libncl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 59%] Built target ncl make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/alignment /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/alignment /build/iqtree-1.6.12+dfsg/build.mpi/alignment/CMakeFiles/alignment.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/alignment/CMakeFiles/alignment.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/alignment/CMakeFiles/alignment.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/alignment/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/alignment/CMakeFiles/alignment.dir/depend.internal". Scanning dependencies of target alignment make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 59%] Building CXX object alignment/CMakeFiles/alignment.dir/pattern.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/pattern.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/pattern.cpp [ 60%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o [ 61%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignmentpairwise.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignmentpairwiseplen.cpp [ 62%] Building CXX object alignment/CMakeFiles/alignment.dir/alignment.cpp.o [ 62%] Building CXX object alignment/CMakeFiles/alignment.dir/alignmentpairwise.cpp.o [ 63%] Building CXX object alignment/CMakeFiles/alignment.dir/maalignment.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/alignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/alignment.cpp [ 63%] Building CXX object alignment/CMakeFiles/alignment.dir/superalignment.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/alignmentpairwise.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/alignmentpairwise.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/maalignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/maalignment.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/alignment.dir/superalignment.cpp.o -c /build/iqtree-1.6.12+dfsg/alignment/superalignment.cpp /build/iqtree-1.6.12+dfsg/alignment/alignment.cpp:2925:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 2925 | void convert_range(const char *str, int &lower, int &upper, int &step_size, char* &endptr) throw (string) { | ^~~~~ [ 64%] Linking CXX static library libpda.a cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/cmake -P CMakeFiles/pda.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/pda && /usr/bin/cmake -E cmake_link_script CMakeFiles/pda.dir/link.txt --verbose=1 /usr/bin/ar qc libpda.a CMakeFiles/pda.dir/circularnetwork.cpp.o CMakeFiles/pda.dir/greedy.cpp.o CMakeFiles/pda.dir/gurobiwrapper.cpp.o CMakeFiles/pda.dir/hashsplitset.cpp.o CMakeFiles/pda.dir/pdnetwork.cpp.o CMakeFiles/pda.dir/pruning.cpp.o CMakeFiles/pda.dir/split.cpp.o CMakeFiles/pda.dir/splitgraph.cpp.o CMakeFiles/pda.dir/splitset.cpp.o CMakeFiles/pda.dir/lpwrapper.c.o CMakeFiles/pda.dir/ecopd.cpp.o CMakeFiles/pda.dir/graph.cpp.o CMakeFiles/pda.dir/pdtree.cpp.o CMakeFiles/pda.dir/pdtreeset.cpp.o CMakeFiles/pda.dir/ecopdmtreeset.cpp.o /usr/bin/ranlib libpda.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 64%] Built target pda [ 65%] Linking CXX static library libutils.a cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/cmake -P CMakeFiles/utils.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/utils.dir/link.txt --verbose=1 /usr/bin/ar qc libutils.a CMakeFiles/utils.dir/eigendecomposition.cpp.o CMakeFiles/utils.dir/gzstream.cpp.o CMakeFiles/utils.dir/optimization.cpp.o CMakeFiles/utils.dir/stoprule.cpp.o CMakeFiles/utils.dir/tools.cpp.o CMakeFiles/utils.dir/pllnni.cpp.o CMakeFiles/utils.dir/checkpoint.cpp.o CMakeFiles/utils.dir/MPIHelper.cpp.o /usr/bin/ranlib libutils.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 65%] Built target utils make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/model /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/model /build/iqtree-1.6.12+dfsg/build.mpi/model/CMakeFiles/model.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/model/CMakeFiles/model.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/model/CMakeFiles/model.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/model/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/model/CMakeFiles/model.dir/depend.internal". Scanning dependencies of target model make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 65%] Building CXX object model/CMakeFiles/model.dir/modelmarkov.cpp.o [ 67%] Building CXX object model/CMakeFiles/model.dir/modelbin.cpp.o [ 67%] Building CXX object model/CMakeFiles/model.dir/modeldna.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmarkov.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp [ 67%] Building CXX object model/CMakeFiles/model.dir/modelfactory.cpp.o [ 67%] Building CXX object model/CMakeFiles/model.dir/rategammainvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modeldna.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modeldna.cpp [ 68%] Building CXX object model/CMakeFiles/model.dir/modelprotein.cpp.o [ 68%] Building CXX object model/CMakeFiles/model.dir/modelset.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelbin.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelbin.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelfactory.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp [ 69%] Building CXX object model/CMakeFiles/model.dir/modelsubst.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelprotein.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp [ 70%] Building CXX object model/CMakeFiles/model.dir/partitionmodel.cpp.o [ 70%] Building CXX object model/CMakeFiles/model.dir/partitionmodelplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelset.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelset.cpp [ 71%] Building CXX object model/CMakeFiles/model.dir/rategamma.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelsubst.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelsubst.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/partitionmodel.cpp.o -c /build/iqtree-1.6.12+dfsg/model/partitionmodel.cpp [ 72%] Building CXX object model/CMakeFiles/model.dir/rateheterogeneity.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/partitionmodelplen.cpp.o -c /build/iqtree-1.6.12+dfsg/model/partitionmodelplen.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rategammainvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rategammainvar.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rategamma.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rategamma.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterogeneity.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterogeneity.cpp [ 73%] Building CXX object model/CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratemeyerhaeseler.cpp [ 73%] Building CXX object model/CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o [ 74%] Building CXX object model/CMakeFiles/model.dir/rateinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratemeyerdiscrete.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateinvar.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:20: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modeldna.cpp:240:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 240 | void ModelDNA::readRates(string str) throw(const char*) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelset.h:23, from /build/iqtree-1.6.12+dfsg/model/modelset.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelprotein.h:23, from /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelbin.h:23, from /build/iqtree-1.6.12+dfsg/model/modelbin.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelprotein.cpp:651:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 651 | void ModelProtein::readRates(istream &in) throw(const char*, string) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:24: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:26: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:27: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactory.cpp:30: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 74%] Building CXX object model/CMakeFiles/model.dir/ratekategory.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratekategory.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratekategory.cpp [ 75%] Building CXX object model/CMakeFiles/model.dir/ratefree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratefree.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratefree.cpp [ 76%] Building CXX object model/CMakeFiles/model.dir/ratefreeinvar.cpp.o [ 76%] Building CXX object model/CMakeFiles/model.dir/rateheterotachy.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/ratefreeinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/ratefreeinvar.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterotachy.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterotachy.cpp /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:997:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 997 | void ModelMarkov::readRates(istream &in) throw(const char*, string) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1052:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1052 | void ModelMarkov::readRates(string str) throw(const char*) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1081:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1081 | void ModelMarkov::readStateFreq(istream &in) throw(const char*) { | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.cpp:1095:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 1095 | void ModelMarkov::readStateFreq(string str) throw(const char*) { | ^~~~~ [ 77%] Building CXX object model/CMakeFiles/model.dir/rateheterotachyinvar.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/rateheterotachyinvar.cpp.o -c /build/iqtree-1.6.12+dfsg/model/rateheterotachyinvar.cpp [ 77%] Building CXX object model/CMakeFiles/model.dir/modelcodon.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelcodon.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelcodon.cpp [ 78%] Building CXX object model/CMakeFiles/model.dir/modelmorphology.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmorphology.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp [ 78%] Building CXX object model/CMakeFiles/model.dir/modelmixture.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelmixture.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp [ 79%] Building CXX object model/CMakeFiles/model.dir/modelunrest.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelunrest.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelunrest.cpp [ 80%] Building CXX object model/CMakeFiles/model.dir/modelliemarkov.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelliemarkov.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelliemarkov.cpp [ 80%] Building CXX object model/CMakeFiles/model.dir/modelpomo.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelpomo.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp [ 81%] Building CXX object model/CMakeFiles/model.dir/modelpomomixture.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelpomomixture.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/model/ratefree.cpp:13: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 81%] Building CXX object model/CMakeFiles/model.dir/modelfactorymixlen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/model.dir/modelfactorymixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/model/modelfactorymixlen.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelcodon.h:11, from /build/iqtree-1.6.12+dfsg/model/modelcodon.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:11, from /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmorphology.cpp:44:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 44 | void ModelMorphology::readRates(istream &in) throw(const char*, string) { | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:10: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.cpp:13: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelunrest.h:11, from /build/iqtree-1.6.12+dfsg/model/modelunrest.cpp:8: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.h:14, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.h:14, from /build/iqtree-1.6.12+dfsg/model/modelpomomixture.cpp:9: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modeldna.h:23, from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp:1: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelpomo.h:4, from /build/iqtree-1.6.12+dfsg/model/modelpomo.cpp:1: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelfactorymixlen.cpp:12: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelliemarkov.h:11, from /build/iqtree-1.6.12+dfsg/model/modelliemarkov.cpp:25: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 81%] Linking CXX static library libalignment.a cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/cmake -P CMakeFiles/alignment.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/alignment.dir/link.txt --verbose=1 /usr/bin/ar qc libalignment.a CMakeFiles/alignment.dir/pattern.cpp.o CMakeFiles/alignment.dir/alignment.cpp.o CMakeFiles/alignment.dir/alignmentpairwise.cpp.o CMakeFiles/alignment.dir/maalignment.cpp.o CMakeFiles/alignment.dir/superalignment.cpp.o CMakeFiles/alignment.dir/superalignmentpairwise.cpp.o CMakeFiles/alignment.dir/superalignmentpairwiseplen.cpp.o /usr/bin/ranlib libalignment.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 81%] Built target alignment [ 82%] Linking CXX static library libkernelsse.a /usr/bin/cmake -P CMakeFiles/kernelsse.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/kernelsse.dir/link.txt --verbose=1 /usr/bin/ar qc libkernelsse.a CMakeFiles/kernelsse.dir/tree/phylokernelsse.cpp.o /usr/bin/ranlib libkernelsse.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 82%] Built target kernelsse [ 83%] Linking CXX static library libmodel.a cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/cmake -P CMakeFiles/model.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/model && /usr/bin/cmake -E cmake_link_script CMakeFiles/model.dir/link.txt --verbose=1 /usr/bin/ar qc libmodel.a CMakeFiles/model.dir/modelmarkov.cpp.o CMakeFiles/model.dir/modelbin.cpp.o CMakeFiles/model.dir/modeldna.cpp.o CMakeFiles/model.dir/modelfactory.cpp.o CMakeFiles/model.dir/modelprotein.cpp.o CMakeFiles/model.dir/modelset.cpp.o CMakeFiles/model.dir/modelsubst.cpp.o CMakeFiles/model.dir/partitionmodel.cpp.o CMakeFiles/model.dir/partitionmodelplen.cpp.o CMakeFiles/model.dir/rategamma.cpp.o CMakeFiles/model.dir/rategammainvar.cpp.o CMakeFiles/model.dir/rateheterogeneity.cpp.o CMakeFiles/model.dir/rateinvar.cpp.o CMakeFiles/model.dir/ratemeyerdiscrete.cpp.o CMakeFiles/model.dir/ratemeyerhaeseler.cpp.o CMakeFiles/model.dir/ratekategory.cpp.o CMakeFiles/model.dir/ratefree.cpp.o CMakeFiles/model.dir/ratefreeinvar.cpp.o CMakeFiles/model.dir/rateheterotachy.cpp.o CMakeFiles/model.dir/rateheterotachyinvar.cpp.o CMakeFiles/model.dir/modelcodon.cpp.o CMakeFiles/model.dir/modelmorphology.cpp.o CMakeFiles/model.dir/modelmixture.cpp.o CMakeFiles/model.dir/modelunrest.cpp.o CMakeFiles/model.dir/modelliemarkov.cpp.o CMakeFiles/model.dir/modelpomo.cpp.o CMakeFiles/model.dir/modelpomomixture.cpp.o CMakeFiles/model.dir/modelfactorymixlen.cpp.o /usr/bin/ranlib libmodel.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 83%] Built target model make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/tree /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/tree /build/iqtree-1.6.12+dfsg/build.mpi/tree/CMakeFiles/tree.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/tree/CMakeFiles/tree.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/tree/CMakeFiles/tree.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/tree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/tree/CMakeFiles/tree.dir/depend.internal". Scanning dependencies of target tree make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 84%] Building CXX object tree/CMakeFiles/tree.dir/constrainttree.cpp.o [ 84%] Building CXX object tree/CMakeFiles/tree.dir/candidateset.cpp.o [ 85%] Building CXX object tree/CMakeFiles/tree.dir/iqtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/constrainttree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/constrainttree.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/candidateset.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/candidateset.cpp [ 85%] Building CXX object tree/CMakeFiles/tree.dir/matree.cpp.o [ 86%] Building CXX object tree/CMakeFiles/tree.dir/memslot.cpp.o [ 86%] Building CXX object tree/CMakeFiles/tree.dir/mexttree.cpp.o [ 86%] Building CXX object tree/CMakeFiles/tree.dir/phylosupertreeplen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/iqtree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/iqtree.cpp [ 87%] Building CXX object tree/CMakeFiles/tree.dir/mtree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/matree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/matree.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/memslot.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/memslot.cpp [ 88%] Building CXX object tree/CMakeFiles/tree.dir/mtreeset.cpp.o [ 88%] Building CXX object tree/CMakeFiles/tree.dir/ncbitree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mexttree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mexttree.cpp [ 89%] Building CXX object tree/CMakeFiles/tree.dir/node.cpp.o [ 89%] Building CXX object tree/CMakeFiles/tree.dir/phylonode.cpp.o [ 90%] Building CXX object tree/CMakeFiles/tree.dir/phylonodemixlen.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mtree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mtree.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylosupertreeplen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylosupertreeplen.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/mtreeset.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/mtreeset.cpp [ 91%] Building CXX object tree/CMakeFiles/tree.dir/phylosupertree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/ncbitree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/ncbitree.cpp [ 92%] Building CXX object tree/CMakeFiles/tree.dir/phylotree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/node.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/node.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylonode.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylonode.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylonodemixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylonodemixlen.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylosupertree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylosupertree.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp [ 93%] Building CXX object tree/CMakeFiles/tree.dir/phylotreepars.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreepars.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreepars.cpp [ 93%] Building CXX object tree/CMakeFiles/tree.dir/phylotreemixlen.cpp.o [ 94%] Building CXX object tree/CMakeFiles/tree.dir/phylotreesse.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreemixlen.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreemixlen.cpp cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/phylotreesse.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/phylotreesse.cpp In file included from /build/iqtree-1.6.12+dfsg/tree/phylotreesse.cpp:35: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/tree/phylotreemixlen.cpp:12: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/tree/iqtree.cpp:29: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 94%] Building CXX object tree/CMakeFiles/tree.dir/quartet.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/quartet.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/quartet.cpp [ 95%] Building CXX object tree/CMakeFiles/tree.dir/supernode.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/supernode.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/supernode.cpp In file included from /build/iqtree-1.6.12+dfsg/model/modelmixture.h:13, from /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp:34: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ [ 95%] Building CXX object tree/CMakeFiles/tree.dir/tinatree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/tinatree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/tinatree.cpp [ 96%] Building CXX object tree/CMakeFiles/tree.dir/parstree.cpp.o cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/tree.dir/parstree.cpp.o -c /build/iqtree-1.6.12+dfsg/tree/parstree.cpp /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp: In member function 'virtual int PhyloTree::getNumLhCat(SiteLoglType)': /build/iqtree-1.6.12+dfsg/tree/phylotree.cpp:1202:1: warning: control reaches end of non-void function [-Wreturn-type] 1202 | } | ^ [ 97%] Linking CXX static library libtree.a cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/cmake -P CMakeFiles/tree.dir/cmake_clean_target.cmake cd /build/iqtree-1.6.12+dfsg/build.mpi/tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree.dir/link.txt --verbose=1 /usr/bin/ar qc libtree.a CMakeFiles/tree.dir/constrainttree.cpp.o CMakeFiles/tree.dir/candidateset.cpp.o CMakeFiles/tree.dir/iqtree.cpp.o CMakeFiles/tree.dir/matree.cpp.o CMakeFiles/tree.dir/memslot.cpp.o CMakeFiles/tree.dir/mexttree.cpp.o CMakeFiles/tree.dir/mtree.cpp.o CMakeFiles/tree.dir/mtreeset.cpp.o CMakeFiles/tree.dir/ncbitree.cpp.o CMakeFiles/tree.dir/node.cpp.o CMakeFiles/tree.dir/phylonode.cpp.o CMakeFiles/tree.dir/phylonodemixlen.cpp.o CMakeFiles/tree.dir/phylosupertree.cpp.o CMakeFiles/tree.dir/phylosupertreeplen.cpp.o CMakeFiles/tree.dir/phylotree.cpp.o CMakeFiles/tree.dir/phylotreemixlen.cpp.o CMakeFiles/tree.dir/phylotreepars.cpp.o CMakeFiles/tree.dir/phylotreesse.cpp.o CMakeFiles/tree.dir/quartet.cpp.o CMakeFiles/tree.dir/supernode.cpp.o CMakeFiles/tree.dir/tinatree.cpp.o CMakeFiles/tree.dir/parstree.cpp.o /usr/bin/ranlib libtree.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 97%] Built target tree make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/iqtree.dir/DependInfo.cmake --color= Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/iqtree.dir/DependInfo.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/iqtree.dir/depend.internal". Dependee "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/iqtree.dir/depend.internal". Scanning dependencies of target iqtree make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 98%] Building CXX object CMakeFiles/iqtree.dir/main/main.cpp.o [ 99%] Building CXX object CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o [ 99%] Building CXX object CMakeFiles/iqtree.dir/main/phylotesting.cpp.o /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/main.cpp.o -c /build/iqtree-1.6.12+dfsg/main/main.cpp [100%] Building CXX object CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o -c /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/main/phylotesting.cpp.o -c /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp /usr/bin/c++ -DBINARY32 -DIQ_TREE -D_IQTREE_MPI -D_USE_PTHREADS -I/build/iqtree-1.6.12+dfsg -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/iqtree-1.6.12+dfsg/build.mpi -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -I/usr/include/eigen3 -DUSE_EIGEN3 -D__SSE3 -msse3 -o CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o -c /build/iqtree-1.6.12+dfsg/obsolete/parsmultistate.cpp /build/iqtree-1.6.12+dfsg/main/main.cpp:232:58: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 232 | out << " " << 8*sizeof(void*) << "-bit" << " built " << __DATE__; | ^~~~~~~~ /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:862:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 862 | << "." << iqtree_VERSION_PATCH << " built " << __DATE__ << endl | ^~~~~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:20: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:21: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:30: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:35: /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:142:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 142 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:149:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 149 | virtual void readRates(string str) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 156 | virtual void readStateFreq(istream &in) throw(const char*); | ^~~~~ /build/iqtree-1.6.12+dfsg/model/modelmarkov.h:163:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 163 | virtual void readStateFreq(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:36: /build/iqtree-1.6.12+dfsg/model/modeldna.h:91:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 91 | virtual void readRates(string str) throw(const char*); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:33: /build/iqtree-1.6.12+dfsg/model/modelmorphology.h:78:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 78 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ In file included from /build/iqtree-1.6.12+dfsg/main/phyloanalysis.cpp:44: /build/iqtree-1.6.12+dfsg/model/modelprotein.h:69:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 69 | virtual void readRates(istream &in) throw(const char*, string); | ^~~~~ /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp: In function 'std::string getSeqTypeName(SeqType)': /build/iqtree-1.6.12+dfsg/main/phylotesting.cpp:164:1: warning: control reaches end of non-void function [-Wreturn-type] 164 | } | ^ [100%] Linking CXX executable iqtree-mpi /usr/bin/cmake -E cmake_link_script CMakeFiles/iqtree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -pthread -Wl,-z,relro -Wl,-z,now -rdynamic -rdynamic CMakeFiles/iqtree.dir/main/main.cpp.o CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o CMakeFiles/iqtree.dir/main/phylotesting.cpp.o CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o -o iqtree-mpi -L/build/iqtree-1.6.12+dfsg/lib32 -Wl,-rpath,/build/iqtree-1.6.12+dfsg/lib32:/usr/lib/i386-linux-gnu/openmpi/lib: pll/libpll.a ncl/libncl.a nclextra/libnclextra.a utils/libutils.a pda/libpda.a lbfgsb/liblbfgsb.a whtest/libwhtest.a sprng/libsprng.a vectorclass/libvectorclass.a model/libmodel.a gsl/libgsl.a alignment/libalignment.a tree/libtree.a -lm libkernelsse.a /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so nclextra/libnclextra.a pll/libpll.a model/libmodel.a utils/libutils.a lbfgsb/liblbfgsb.a -lz alignment/libalignment.a ncl/libncl.a gsl/libgsl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [100%] Built target iqtree make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles 0 make[2]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' # restore the old naming to avoid name space conflict with serial build if [ -x build.omp/iqtree ] ; then mv build.omp/iqtree build.omp/iqtree-omp ; fi dh override_dh_auto_build make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' # use only the first example for build time test to save time on autobuilders sed '/ myprefix/,$d' debian/Documents_source/example.sh > example.short echo 'time /build/iqtree-1.6.12+dfsg/build.omp/iqtree-omp -s example.phy -omp 2 -redo' >> example.short time sh example.short Executing tests using /build/iqtree-1.6.12+dfsg/build.omp/iqtree-omp ... + time /build/iqtree-1.6.12+dfsg/build.omp/iqtree-omp -s example.phy IQ-TREE multicore version 1.6.12 for Linux 32-bit built Dec 4 2019 Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor, Heiko Schmidt, Dominik Schrempf, Michael Woodhams. Host: ionos16-i386 (SSE4.2, 35 GB RAM) Command: /build/iqtree-1.6.12+dfsg/build.omp/iqtree-omp -s example.phy Seed: 951162 (Using SPRNG - Scalable Parallel Random Number Generator) Time: Wed Jun 29 00:05:17 2022 Kernel: SSE2 - 1 threads (18 CPU cores detected) HINT: Use -nt option to specify number of threads because your CPU has 18 cores! HINT: -nt AUTO will automatically determine the best number of threads to use. Reading alignment file example.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences Alignment has 44 sequences with 384 columns, 355 distinct patterns 322 parsimony-informative, 22 singleton sites, 40 constant sites Gap/Ambiguity Composition p-value 1 FL-1-103 19.53% failed 0.00% 2 OSH-1-103 19.53% failed 0.00% 3 CEU-1-103 19.53% failed 0.79% 4 TH-1-103 19.53% failed 0.10% 5 CAa1-103 19.53% failed 0.14% 6 CAb1-103 19.53% failed 0.00% 7 SI-1-103 19.53% failed 0.00% 8 LU-1-103 19.53% failed 0.01% 9 SU-1-103 19.53% failed 0.00% 10 RP-56-175 6.25% failed 4.72% 11 A-14-133 6.25% failed 3.08% 12 PR-57-176 6.25% passed 63.84% 13 PY-61-180 6.25% passed 69.25% 14 MGI-58-176 7.03% failed 0.05% 15 SCR-58-177 6.25% passed 94.64% 16 SA-60-179 6.25% passed 66.43% 17 BR-60-179 6.25% passed 27.40% 18 CPL-58-177 6.25% passed 55.10% 19 LTU-59-178 6.25% passed 28.43% 20 TSP-58-177 6.25% passed 51.74% 21 YBN-56-175 6.25% passed 72.08% 22 AN-56-175 6.25% passed 52.14% 23 HI-60-179 6.25% passed 51.36% 24 ANA-56-175 6.25% passed 88.34% 25 ZE-48-166 7.03% failed 0.05% 26 EAT-48-166 7.03% passed 14.40% 27 YSA-46-164 7.03% passed 6.42% 28 TH-52-170 7.03% passed 20.58% 29 LA-68-186 7.03% passed 10.46% 30 GR-854-978 2.34% failed 0.02% 31 MO-29-154 1.56% failed 0.00% 32 OE-36-161 1.56% passed 15.04% 33 EME-43-168 1.56% failed 1.16% 34 LRE-46-171 1.56% failed 0.00% 35 P6-2-107 17.19% passed 44.21% 36 HO-1-106 17.19% passed 14.57% 37 SP-1-106 17.19% failed 2.41% 38 PA-1-105 17.97% failed 0.00% 39 NE-2-109 15.62% passed 53.11% 40 IFE-2-109 15.62% passed 63.82% 41 HS-9-115 16.41% failed 0.03% 42 RVI-7-114 15.62% failed 0.12% 43 IFE-8-115 15.62% passed 39.01% 44 RVI-5-112 15.62% failed 0.04% **** TOTAL 10.87% 22 sequences failed composition chi2 test (p-value<5%; df=3) Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.006 seconds NOTE: ModelFinder requires 5 MB RAM! ModelFinder will test 286 DNA models (sample size: 384) ... No. Model -LnL df AIC AICc BIC 1 JC 11912.566 85 23995.131 24044.191 24330.936 2 JC+I 11659.889 86 23491.778 23542.162 23831.534 3 JC+G4 11385.895 86 22943.790 22994.173 23283.545 4 JC+I+G4 11366.818 87 22907.635 22959.365 23251.341 5 JC+R2 11479.523 87 23133.046 23184.775 23476.752 6 JC+R3 11373.187 89 22924.375 22978.865 23275.982 7 JC+R4 11361.103 91 22904.207 22961.549 23263.715 8 JC+R5 11360.966 93 22907.932 22968.221 23275.342 14 F81+F 11915.634 88 24007.268 24060.366 24354.925 15 F81+F+I 11659.637 89 23497.274 23551.764 23848.881 16 F81+F+G4 11380.931 89 22939.862 22994.352 23291.469 17 F81+F+I+G4 11362.024 90 22904.048 22959.952 23259.606 18 F81+F+R2 11476.590 90 23133.181 23189.085 23488.739 19 F81+F+R3 11364.142 92 22912.284 22971.088 23275.743 20 F81+F+R4 11356.169 94 22900.337 22962.137 23271.698 21 F81+F+R5 11356.154 96 22904.309 22969.201 23283.570 27 K2P 11874.700 86 23921.399 23971.783 24261.155 28 K2P+I 11621.287 87 23416.573 23468.303 23760.279 29 K2P+G4 11343.265 87 22860.530 22912.259 23204.236 30 K2P+I+G4 11324.732 88 22825.465 22878.563 23173.121 31 K2P+R2 11439.677 88 23055.354 23108.452 23403.010 32 K2P+R3 11326.355 90 22832.711 22888.615 23188.268 33 K2P+R4 11318.416 92 22820.832 22879.636 23184.291 34 K2P+R5 11318.313 94 22824.626 22886.425 23195.986 40 HKY+F 11877.231 89 23932.462 23986.952 24284.069 41 HKY+F+I 11619.641 90 23419.282 23475.187 23774.840 42 HKY+F+G4 11335.874 90 22851.748 22907.652 23207.306 43 HKY+F+I+G4 11317.536 91 22817.071 22874.414 23176.580 44 HKY+F+R2 11434.764 91 23051.528 23108.870 23411.036 45 HKY+F+R3 11319.981 93 22825.961 22886.251 23193.371 46 HKY+F+R4 11311.220 95 22812.440 22875.773 23187.751 47 HKY+F+R5 11311.163 97 22816.326 22882.802 23199.539 53 TNe 11874.227 87 23922.454 23974.183 24266.160 54 TNe+I 11616.399 88 23408.798 23461.896 23756.454 55 TNe+G4 11342.242 88 22860.484 22913.582 23208.141 56 TNe+I+G4 11323.049 89 22824.098 22878.588 23175.705 57 TNe+R2 11439.024 89 23056.048 23110.538 23407.655 58 TNe+R3 11322.819 91 22827.638 22884.981 23187.147 59 TNe+R4 11315.486 93 22816.972 22877.261 23184.381 60 TNe+R5 11315.417 95 22820.834 22884.167 23196.145 66 TN+F 11876.686 90 23933.373 23989.277 24288.931 67 TN+F+I 11614.039 91 23410.078 23467.421 23769.587 68 TN+F+G4 11334.319 91 22850.637 22907.980 23210.146 69 TN+F+I+G4 11315.162 92 22814.324 22873.129 23177.784 70 TN+F+R2 11433.772 92 23051.543 23110.347 23415.002 71 TN+F+R3 11315.669 94 22819.337 22881.137 23190.698 72 TN+F+R4 11307.480 96 22806.960 22871.852 23186.222 73 TN+F+R5 11307.442 98 22810.884 22878.968 23198.047 79 K3P 11853.495 87 23880.990 23932.719 24224.696 80 K3P+I 11599.665 88 23375.330 23428.428 23722.986 81 K3P+G4 11326.708 88 22829.415 22882.513 23177.072 82 K3P+I+G4 11307.364 89 22792.728 22847.218 23144.336 83 K3P+R2 11418.686 89 23015.373 23069.862 23366.980 84 K3P+R3 11307.150 91 22796.301 22853.643 23155.809 85 K3P+R4 11299.676 93 22785.352 22845.642 23152.762 86 K3P+R5 11299.658 95 22789.316 22852.649 23164.627 92 K3Pu+F 11856.077 90 23892.154 23948.058 24247.712 93 K3Pu+F+I 11598.105 91 23378.210 23435.552 23737.718 94 K3Pu+F+G4 11320.114 91 22822.228 22879.571 23181.737 95 K3Pu+F+I+G4 11300.915 92 22785.830 22844.634 23149.289 96 K3Pu+F+R2 11414.158 92 23012.316 23071.121 23375.776 97 K3Pu+F+R3 11301.554 94 22791.108 22852.907 23162.469 98 K3Pu+F+R4 11293.160 96 22778.320 22843.212 23157.581 99 K3Pu+F+R5 11293.138 98 22782.275 22850.360 23169.438 105 TPM2+F 11877.146 90 23934.292 23990.197 24289.850 106 TPM2+F+I 11619.417 91 23420.834 23478.177 23780.343 107 TPM2+F+G4 11335.477 91 22852.954 22910.297 23212.463 108 TPM2+F+I+G4 11317.200 92 22818.400 22877.204 23181.859 109 TPM2+F+R2 11434.608 92 23053.217 23112.021 23416.676 110 TPM2+F+R3 11318.597 94 22825.195 22886.994 23196.555 111 TPM2+F+R4 11309.408 96 22810.817 22875.709 23190.078 112 TPM2+F+R5 11309.396 98 22814.791 22882.875 23201.954 118 TPM2u+F 11877.146 90 23934.291 23990.196 24289.849 119 TPM2u+F+I 11619.417 91 23420.835 23478.177 23780.343 120 TPM2u+F+G4 11335.477 91 22852.953 22910.296 23212.462 121 TPM2u+F+I+G4 11317.202 92 22818.404 22877.208 23181.863 122 TPM2u+F+R2 11434.612 92 23053.225 23112.029 23416.684 123 TPM2u+F+R3 11318.595 94 22825.190 22886.989 23196.550 124 TPM2u+F+R4 11309.392 96 22810.784 22875.676 23190.046 125 TPM2u+F+R5 11309.380 98 22814.759 22882.843 23201.922 131 TPM3+F 11840.659 90 23861.319 23917.223 24216.877 132 TPM3+F+I 11604.676 91 23391.353 23448.695 23750.861 133 TPM3+F+G4 11330.209 91 22842.419 22899.761 23201.927 134 TPM3+F+I+G4 11312.847 92 22809.693 22868.497 23173.152 135 TPM3+F+R2 11426.764 92 23037.527 23096.331 23400.986 136 TPM3+F+R3 11312.043 94 22812.085 22873.884 23183.445 137 TPM3+F+R4 11304.518 96 22801.037 22865.928 23180.298 138 TPM3+F+R5 11304.517 98 22805.034 22873.118 23192.196 144 TPM3u+F 11840.659 90 23861.319 23917.223 24216.877 145 TPM3u+F+I 11604.676 91 23391.353 23448.695 23750.861 146 TPM3u+F+G4 11330.210 91 22842.420 22899.763 23201.929 147 TPM3u+F+I+G4 11312.847 92 22809.694 22868.498 23173.153 148 TPM3u+F+R2 11426.740 92 23037.480 23096.284 23400.939 149 TPM3u+F+R3 11312.042 94 22812.084 22873.883 23183.444 150 TPM3u+F+R4 11304.511 96 22801.023 22865.915 23180.284 151 TPM3u+F+R5 11304.507 98 22805.013 22873.097 23192.176 157 TIMe 11853.021 88 23882.042 23935.141 24229.699 158 TIMe+I 11594.771 89 23367.542 23422.032 23719.149 159 TIMe+G4 11325.692 89 22829.383 22883.873 23180.991 160 TIMe+I+G4 11305.692 90 22791.384 22847.289 23146.942 161 TIMe+R2 11418.048 90 23016.097 23072.001 23371.655 162 TIMe+R3 11303.843 92 22791.687 22850.491 23155.146 163 TIMe+R4 11297.177 94 22782.353 22844.153 23153.714 164 TIMe+R5 11297.162 96 22786.325 22851.217 23165.587 170 TIM+F 11855.533 91 23893.065 23950.408 24252.574 171 TIM+F+I 11592.513 92 23369.026 23427.830 23732.485 172 TIM+F+G4 11318.589 92 22821.177 22879.981 23184.636 173 TIM+F+I+G4 11298.574 93 22783.148 22843.437 23150.557 174 TIM+F+R2 11413.092 93 23012.185 23072.475 23379.595 175 TIM+F+R3 11297.415 95 22784.829 22848.162 23160.140 176 TIM+F+R4 11289.857 97 22773.713 22840.189 23156.926 177 TIM+F+R5 11289.848 99 22777.697 22847.415 23168.810 183 TIM2e 11874.094 88 23924.187 23977.286 24271.844 184 TIM2e+I 11616.114 89 23410.228 23464.718 23761.835 185 TIM2e+G4 11342.016 89 22862.033 22916.523 23213.640 186 TIM2e+I+G4 11322.875 90 22825.750 22881.655 23181.308 187 TIM2e+R2 11438.970 90 23057.941 23113.845 23413.499 188 TIM2e+R3 11321.595 92 22827.191 22885.995 23190.650 189 TIM2e+R4 11314.067 94 22816.134 22877.933 23187.494 190 TIM2e+R5 11314.058 96 22820.117 22885.009 23199.379 196 TIM2+F 11876.604 91 23935.207 23992.550 24294.716 197 TIM2+F+I 11613.830 92 23411.659 23470.463 23775.118 198 TIM2+F+G4 11333.935 92 22851.870 22910.674 23215.329 199 TIM2+F+I+G4 11314.853 93 22815.705 22875.995 23183.115 200 TIM2+F+R2 11433.637 93 23053.275 23113.565 23420.685 201 TIM2+F+R3 11314.509 95 22819.017 22882.351 23194.328 202 TIM2+F+R4 11305.979 97 22805.959 22872.434 23189.171 203 TIM2+F+R5 11305.961 99 22809.923 22879.641 23201.036 209 TIM3e 11828.787 88 23833.575 23886.673 24181.231 210 TIM3e+I 11595.355 89 23368.710 23423.200 23720.317 211 TIM3e+G4 11331.800 89 22841.600 22896.090 23193.207 212 TIM3e+I+G4 11313.990 90 22807.979 22863.884 23163.537 213 TIM3e+R2 11425.429 90 23030.858 23086.762 23386.415 214 TIM3e+R3 11309.847 92 22803.694 22862.498 23167.153 215 TIM3e+R4 11304.176 94 22796.352 22858.152 23167.713 222 TIM3+F 11839.952 91 23861.905 23919.247 24221.413 223 TIM3+F+I 11599.086 92 23382.172 23440.977 23745.632 224 TIM3+F+G4 11328.549 92 22841.098 22899.902 23204.557 225 TIM3+F+I+G4 11310.405 93 22806.810 22867.100 23174.220 226 TIM3+F+R2 11425.794 93 23037.588 23097.877 23404.997 227 TIM3+F+R3 11307.863 95 22805.725 22869.059 23181.036 228 TIM3+F+R4 11300.800 97 22795.600 22862.076 23178.813 229 TIM3+F+R5 11300.781 99 22799.563 22869.281 23190.677 235 TVMe 11807.354 89 23792.707 23847.197 24144.315 236 TVMe+I 11577.825 90 23335.650 23391.555 23691.208 237 TVMe+G4 11313.878 90 22807.756 22863.661 23163.314 238 TVMe+I+G4 11296.114 91 22774.227 22831.569 23133.736 239 TVMe+R2 11404.255 91 22990.510 23047.852 23350.018 240 TVMe+R3 11293.640 93 22773.279 22833.569 23140.689 241 TVMe+R4 11288.350 95 22766.701 22830.034 23142.012 248 TVM+F 11818.566 92 23821.132 23879.936 24184.591 249 TVM+F+I 11582.327 93 23350.653 23410.943 23718.063 250 TVM+F+G4 11311.673 93 22809.346 22869.635 23176.756 251 TVM+F+I+G4 11293.643 94 22775.286 22837.085 23146.646 252 TVM+F+R2 11404.990 94 22997.979 23059.779 23369.340 253 TVM+F+R3 11292.899 96 22777.799 22842.691 23157.060 254 TVM+F+R4 11286.261 98 22768.522 22836.606 23155.685 255 TVM+F+R5 11286.240 100 22772.480 22843.858 23167.544 261 SYM 11806.716 90 23793.432 23849.336 24148.990 262 SYM+I 11572.954 91 23327.907 23385.250 23687.416 263 SYM+G4 11312.647 91 22807.294 22864.637 23166.803 264 SYM+I+G4 11294.284 92 22772.568 22831.372 23136.027 265 SYM+R2 11403.561 92 22991.122 23049.926 23354.581 266 SYM+R3 11290.136 94 22768.272 22830.072 23139.633 267 SYM+R4 11285.371 96 22762.741 22827.633 23142.003 274 GTR+F 11817.853 93 23821.707 23881.996 24189.116 275 GTR+F+I 11576.719 94 23341.438 23403.237 23712.798 276 GTR+F+G4 11310.031 94 22808.062 22869.861 23179.422 277 GTR+F+I+G4 11291.245 95 22772.489 22835.823 23147.801 278 GTR+F+R2 11404.058 95 22998.115 23061.449 23373.426 279 GTR+F+R3 11288.676 97 22771.351 22837.827 23154.564 280 GTR+F+R4 11282.635 99 22763.271 22832.989 23154.384 281 GTR+F+R5 11282.621 101 22767.242 22840.306 23166.257 Akaike Information Criterion: SYM+R4 Corrected Akaike Information Criterion: SYM+R4 Bayesian Information Criterion: TVMe+I+G4 Best-fit model: TVMe+I+G4 chosen according to BIC All model information printed to example.phy.model.gz CPU time for ModelFinder: 19.937 seconds (0h:0m:19s) Wall-clock time for ModelFinder: 20.267 seconds (0h:0m:20s) NOTE: 2 MB RAM (0 GB) is required! Estimate model parameters (epsilon = 0.100) Thoroughly optimizing +I+G parameters from 10 start values... Init pinv, alpha: 0.000, 1.000 / Estimate: 0.000, 0.980 / LogL: -11313.879 Init pinv, alpha: 0.012, 1.000 / Estimate: 0.087, 1.704 / LogL: -11296.117 Init pinv, alpha: 0.023, 1.000 / Estimate: 0.087, 1.706 / LogL: -11296.111 Init pinv, alpha: 0.035, 1.000 / Estimate: 0.087, 1.703 / LogL: -11296.113 Init pinv, alpha: 0.046, 1.000 / Estimate: 0.087, 1.707 / LogL: -11296.111 Init pinv, alpha: 0.058, 1.000 / Estimate: 0.087, 1.703 / LogL: -11296.113 Init pinv, alpha: 0.069, 1.000 / Estimate: 0.087, 1.706 / LogL: -11296.110 Init pinv, alpha: 0.081, 1.000 / Estimate: 0.087, 1.709 / LogL: -11296.109 Init pinv, alpha: 0.093, 1.000 / Estimate: 0.087, 1.712 / LogL: -11296.109 Init pinv, alpha: 0.104, 1.000 / Estimate: 0.087, 1.712 / LogL: -11296.110 Optimal pinv,alpha: 0.087, 1.712 / LogL: -11296.109 Parameters optimization took 1.507 sec Computing ML distances based on estimated model parameters... 0.023 sec Computing BIONJ tree... 0.001 seconds Log-likelihood of BIONJ tree: -11258.752 -------------------------------------------------------------------- | INITIALIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Generating 98 parsimony trees... 0.640 second Computing log-likelihood of 98 initial trees ... 1.539 seconds Current best score: -11241.369 Do NNI search on 20 best initial trees Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 1: -11225.738 Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 6: -11225.479 Iteration 10 / LogL: -11244.650 / Time: 0h:0m:4s Iteration 20 / LogL: -11225.683 / Time: 0h:0m:6s Finish initializing candidate tree set (17) Current best tree score: -11225.479 / CPU time: 4.592 Number of iterations: 20 -------------------------------------------------------------------- | OPTIMIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 22: -11224.951 Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 26: -11224.920 Iteration 30 / LogL: -11225.170 / Time: 0h:0m:7s (0h:0m:26s left) Iteration 40 / LogL: -11225.205 / Time: 0h:0m:9s (0h:0m:21s left) Iteration 50 / LogL: -11225.724 / Time: 0h:0m:11s (0h:0m:17s left) Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 54: -11224.070 Iteration 60 / LogL: -11225.664 / Time: 0h:0m:13s (0h:0m:21s left) Iteration 70 / LogL: -11225.511 / Time: 0h:0m:15s (0h:0m:18s left) Iteration 80 / LogL: -11224.653 / Time: 0h:0m:16s (0h:0m:15s left) Iteration 90 / LogL: -11224.094 / Time: 0h:0m:18s (0h:0m:13s left) Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 97: -11222.785 Iteration 100 / LogL: -11230.913 / Time: 0h:0m:20s (0h:0m:20s left) Iteration 110 / LogL: -11222.895 / Time: 0h:0m:22s (0h:0m:17s left) Iteration 120 / LogL: -11223.192 / Time: 0h:0m:24s (0h:0m:15s left) Iteration 130 / LogL: -11222.787 / Time: 0h:0m:25s (0h:0m:13s left) UPDATE BEST LOG-LIKELIHOOD: -11222.785 Iteration 140 / LogL: -11225.930 / Time: 0h:0m:27s (0h:0m:11s left) Iteration 150 / LogL: -11234.722 / Time: 0h:0m:29s (0h:0m:9s left) Iteration 160 / LogL: -11223.662 / Time: 0h:0m:31s (0h:0m:7s left) Iteration 170 / LogL: -11234.786 / Time: 0h:0m:33s (0h:0m:5s left) Iteration 180 / LogL: -11228.923 / Time: 0h:0m:35s (0h:0m:3s left) Iteration 190 / LogL: -11223.562 / Time: 0h:0m:36s (0h:0m:1s left) TREE SEARCH COMPLETED AFTER 198 ITERATIONS / Time: 0h:0m:38s -------------------------------------------------------------------- | FINALIZING TREE SEARCH | -------------------------------------------------------------------- Performs final model parameters optimization Estimate model parameters (epsilon = 0.010) 1. Initial log-likelihood: -11222.785 Optimal log-likelihood: -11222.780 Rate parameters: A-C: 1.53642 A-G: 2.64880 A-T: 1.69873 C-G: 2.01056 C-T: 2.64880 G-T: 1.00000 Base frequencies: A: 0.250 C: 0.250 G: 0.250 T: 0.250 Proportion of invariable sites: 0.083 Gamma shape alpha: 1.529 Parameters optimization took 1 rounds (0.030 sec) BEST SCORE FOUND : -11222.780 Total tree length: 12.595 Total number of iterations: 198 CPU time used for tree search: 35.776 sec (0h:0m:35s) Wall-clock time used for tree search: 36.610 sec (0h:0m:36s) Total CPU time used: 37.380 sec (0h:0m:37s) Total wall-clock time used: 38.230 sec (0h:0m:38s) Analysis results written to: IQ-TREE report: example.phy.iqtree Maximum-likelihood tree: example.phy.treefile Likelihood distances: example.phy.mldist Screen log file: example.phy.log Date and Time: Wed Jun 29 00:06:16 2022 57.33user 1.17system 0:58.51elapsed 99%CPU (0avgtext+0avgdata 11944maxresident)k 0inputs+296outputs (0major+68032minor)pagefaults 0swaps + time /build/iqtree-1.6.12+dfsg/build.omp/iqtree-omp -s example.phy -omp 2 -redo IQ-TREE multicore version 1.6.12 for Linux 32-bit built Dec 4 2019 Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor, Heiko Schmidt, Dominik Schrempf, Michael Woodhams. Host: ionos16-i386 (SSE4.2, 35 GB RAM) Command: /build/iqtree-1.6.12+dfsg/build.omp/iqtree-omp -s example.phy -omp 2 -redo Seed: 470572 (Using SPRNG - Scalable Parallel Random Number Generator) Time: Wed Jun 29 00:06:16 2022 Kernel: SSE2 - 2 threads (18 CPU cores detected) Reading alignment file example.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences Alignment has 44 sequences with 384 columns, 355 distinct patterns 322 parsimony-informative, 22 singleton sites, 40 constant sites Gap/Ambiguity Composition p-value 1 FL-1-103 19.53% failed 0.00% 2 OSH-1-103 19.53% failed 0.00% 3 CEU-1-103 19.53% failed 0.79% 4 TH-1-103 19.53% failed 0.10% 5 CAa1-103 19.53% failed 0.14% 6 CAb1-103 19.53% failed 0.00% 7 SI-1-103 19.53% failed 0.00% 8 LU-1-103 19.53% failed 0.01% 9 SU-1-103 19.53% failed 0.00% 10 RP-56-175 6.25% failed 4.72% 11 A-14-133 6.25% failed 3.08% 12 PR-57-176 6.25% passed 63.84% 13 PY-61-180 6.25% passed 69.25% 14 MGI-58-176 7.03% failed 0.05% 15 SCR-58-177 6.25% passed 94.64% 16 SA-60-179 6.25% passed 66.43% 17 BR-60-179 6.25% passed 27.40% 18 CPL-58-177 6.25% passed 55.10% 19 LTU-59-178 6.25% passed 28.43% 20 TSP-58-177 6.25% passed 51.74% 21 YBN-56-175 6.25% passed 72.08% 22 AN-56-175 6.25% passed 52.14% 23 HI-60-179 6.25% passed 51.36% 24 ANA-56-175 6.25% passed 88.34% 25 ZE-48-166 7.03% failed 0.05% 26 EAT-48-166 7.03% passed 14.40% 27 YSA-46-164 7.03% passed 6.42% 28 TH-52-170 7.03% passed 20.58% 29 LA-68-186 7.03% passed 10.46% 30 GR-854-978 2.34% failed 0.02% 31 MO-29-154 1.56% failed 0.00% 32 OE-36-161 1.56% passed 15.04% 33 EME-43-168 1.56% failed 1.16% 34 LRE-46-171 1.56% failed 0.00% 35 P6-2-107 17.19% passed 44.21% 36 HO-1-106 17.19% passed 14.57% 37 SP-1-106 17.19% failed 2.41% 38 PA-1-105 17.97% failed 0.00% 39 NE-2-109 15.62% passed 53.11% 40 IFE-2-109 15.62% passed 63.82% 41 HS-9-115 16.41% failed 0.03% 42 RVI-7-114 15.62% failed 0.12% 43 IFE-8-115 15.62% passed 39.01% 44 RVI-5-112 15.62% failed 0.04% **** TOTAL 10.87% 22 sequences failed composition chi2 test (p-value<5%; df=3) NOTE: Restoring information from model checkpoint file example.phy.model.gz CHECKPOINT: Initial tree restored NOTE: ModelFinder requires 5 MB RAM! ModelFinder will test 286 DNA models (sample size: 384) ... No. Model -LnL df AIC AICc BIC 1 JC 11912.566 85 23995.131 24044.191 24330.936 2 JC+I 11659.889 86 23491.778 23542.162 23831.534 3 JC+G4 11385.895 86 22943.790 22994.173 23283.545 4 JC+I+G4 11366.818 87 22907.635 22959.365 23251.341 5 JC+R2 11479.523 87 23133.046 23184.775 23476.752 6 JC+R3 11373.187 89 22924.375 22978.865 23275.982 7 JC+R4 11361.103 91 22904.207 22961.549 23263.715 8 JC+R5 11360.966 93 22907.932 22968.221 23275.342 14 F81+F 11915.634 88 24007.268 24060.366 24354.925 15 F81+F+I 11659.637 89 23497.274 23551.764 23848.881 16 F81+F+G4 11380.931 89 22939.862 22994.352 23291.469 17 F81+F+I+G4 11362.024 90 22904.048 22959.952 23259.606 18 F81+F+R2 11476.590 90 23133.181 23189.085 23488.739 19 F81+F+R3 11364.142 92 22912.284 22971.088 23275.743 20 F81+F+R4 11356.169 94 22900.337 22962.137 23271.698 21 F81+F+R5 11356.154 96 22904.309 22969.201 23283.570 27 K2P 11874.700 86 23921.399 23971.783 24261.155 28 K2P+I 11621.287 87 23416.573 23468.303 23760.279 29 K2P+G4 11343.265 87 22860.530 22912.259 23204.236 30 K2P+I+G4 11324.732 88 22825.465 22878.563 23173.121 31 K2P+R2 11439.677 88 23055.354 23108.452 23403.010 32 K2P+R3 11326.355 90 22832.711 22888.615 23188.268 33 K2P+R4 11318.416 92 22820.832 22879.636 23184.291 34 K2P+R5 11318.313 94 22824.626 22886.425 23195.986 40 HKY+F 11877.231 89 23932.462 23986.952 24284.069 41 HKY+F+I 11619.641 90 23419.282 23475.187 23774.840 42 HKY+F+G4 11335.874 90 22851.748 22907.652 23207.306 43 HKY+F+I+G4 11317.536 91 22817.071 22874.414 23176.580 44 HKY+F+R2 11434.764 91 23051.528 23108.870 23411.036 45 HKY+F+R3 11319.981 93 22825.961 22886.251 23193.371 46 HKY+F+R4 11311.220 95 22812.440 22875.773 23187.751 47 HKY+F+R5 11311.163 97 22816.326 22882.802 23199.539 53 TNe 11874.227 87 23922.454 23974.183 24266.160 54 TNe+I 11616.399 88 23408.798 23461.896 23756.454 55 TNe+G4 11342.242 88 22860.484 22913.582 23208.141 56 TNe+I+G4 11323.049 89 22824.098 22878.588 23175.705 57 TNe+R2 11439.024 89 23056.048 23110.538 23407.655 58 TNe+R3 11322.819 91 22827.638 22884.981 23187.147 59 TNe+R4 11315.486 93 22816.971 22877.261 23184.381 60 TNe+R5 11315.417 95 22820.834 22884.167 23196.145 66 TN+F 11876.686 90 23933.373 23989.277 24288.931 67 TN+F+I 11614.039 91 23410.078 23467.421 23769.587 68 TN+F+G4 11334.319 91 22850.637 22907.980 23210.146 69 TN+F+I+G4 11315.162 92 22814.324 22873.129 23177.784 70 TN+F+R2 11433.772 92 23051.543 23110.347 23415.002 71 TN+F+R3 11315.669 94 22819.338 22881.137 23190.698 72 TN+F+R4 11307.480 96 22806.960 22871.852 23186.222 73 TN+F+R5 11307.442 98 22810.884 22878.968 23198.047 79 K3P 11853.495 87 23880.990 23932.719 24224.696 80 K3P+I 11599.665 88 23375.330 23428.428 23722.986 81 K3P+G4 11326.708 88 22829.415 22882.513 23177.072 82 K3P+I+G4 11307.364 89 22792.728 22847.218 23144.336 83 K3P+R2 11418.686 89 23015.373 23069.862 23366.980 84 K3P+R3 11307.150 91 22796.301 22853.643 23155.809 85 K3P+R4 11299.676 93 22785.352 22845.642 23152.762 86 K3P+R5 11299.658 95 22789.316 22852.649 23164.627 92 K3Pu+F 11856.077 90 23892.154 23948.058 24247.712 93 K3Pu+F+I 11598.105 91 23378.210 23435.552 23737.718 94 K3Pu+F+G4 11320.114 91 22822.228 22879.571 23181.737 95 K3Pu+F+I+G4 11300.915 92 22785.830 22844.634 23149.289 96 K3Pu+F+R2 11414.158 92 23012.316 23071.121 23375.776 97 K3Pu+F+R3 11301.554 94 22791.108 22852.907 23162.469 98 K3Pu+F+R4 11293.160 96 22778.320 22843.212 23157.581 99 K3Pu+F+R5 11293.138 98 22782.275 22850.360 23169.438 105 TPM2+F 11877.146 90 23934.292 23990.197 24289.850 106 TPM2+F+I 11619.417 91 23420.834 23478.177 23780.343 107 TPM2+F+G4 11335.477 91 22852.954 22910.297 23212.463 108 TPM2+F+I+G4 11317.200 92 22818.400 22877.204 23181.859 109 TPM2+F+R2 11434.608 92 23053.217 23112.021 23416.676 110 TPM2+F+R3 11318.597 94 22825.195 22886.994 23196.555 111 TPM2+F+R4 11309.408 96 22810.817 22875.709 23190.078 112 TPM2+F+R5 11309.396 98 22814.791 22882.875 23201.954 118 TPM2u+F 11877.146 90 23934.291 23990.196 24289.849 119 TPM2u+F+I 11619.417 91 23420.835 23478.177 23780.343 120 TPM2u+F+G4 11335.477 91 22852.953 22910.296 23212.462 121 TPM2u+F+I+G4 11317.202 92 22818.404 22877.208 23181.863 122 TPM2u+F+R2 11434.612 92 23053.225 23112.029 23416.684 123 TPM2u+F+R3 11318.595 94 22825.190 22886.989 23196.550 124 TPM2u+F+R4 11309.392 96 22810.784 22875.676 23190.046 125 TPM2u+F+R5 11309.379 98 22814.759 22882.843 23201.922 131 TPM3+F 11840.659 90 23861.319 23917.223 24216.877 132 TPM3+F+I 11604.676 91 23391.353 23448.695 23750.861 133 TPM3+F+G4 11330.209 91 22842.419 22899.761 23201.927 134 TPM3+F+I+G4 11312.847 92 22809.693 22868.497 23173.152 135 TPM3+F+R2 11426.764 92 23037.527 23096.331 23400.986 136 TPM3+F+R3 11312.042 94 22812.085 22873.884 23183.445 137 TPM3+F+R4 11304.518 96 22801.036 22865.928 23180.298 138 TPM3+F+R5 11304.517 98 22805.034 22873.118 23192.196 144 TPM3u+F 11840.659 90 23861.319 23917.223 24216.877 145 TPM3u+F+I 11604.676 91 23391.353 23448.695 23750.861 146 TPM3u+F+G4 11330.210 91 22842.420 22899.763 23201.929 147 TPM3u+F+I+G4 11312.847 92 22809.694 22868.498 23173.153 148 TPM3u+F+R2 11426.740 92 23037.480 23096.284 23400.939 149 TPM3u+F+R3 11312.042 94 22812.084 22873.883 23183.444 150 TPM3u+F+R4 11304.511 96 22801.023 22865.915 23180.284 151 TPM3u+F+R5 11304.507 98 22805.013 22873.097 23192.176 157 TIMe 11853.021 88 23882.042 23935.141 24229.699 158 TIMe+I 11594.771 89 23367.542 23422.032 23719.149 159 TIMe+G4 11325.692 89 22829.383 22883.873 23180.991 160 TIMe+I+G4 11305.692 90 22791.384 22847.289 23146.942 161 TIMe+R2 11418.048 90 23016.097 23072.001 23371.655 162 TIMe+R3 11303.843 92 22791.687 22850.491 23155.146 163 TIMe+R4 11297.177 94 22782.353 22844.153 23153.714 164 TIMe+R5 11297.163 96 22786.325 22851.217 23165.587 170 TIM+F 11855.533 91 23893.065 23950.408 24252.574 171 TIM+F+I 11592.513 92 23369.026 23427.830 23732.485 172 TIM+F+G4 11318.589 92 22821.177 22879.981 23184.636 173 TIM+F+I+G4 11298.574 93 22783.148 22843.437 23150.557 174 TIM+F+R2 11413.092 93 23012.185 23072.475 23379.595 175 TIM+F+R3 11297.415 95 22784.829 22848.162 23160.140 176 TIM+F+R4 11289.857 97 22773.713 22840.189 23156.926 177 TIM+F+R5 11289.848 99 22777.697 22847.415 23168.810 183 TIM2e 11874.094 88 23924.187 23977.286 24271.844 184 TIM2e+I 11616.114 89 23410.228 23464.718 23761.835 185 TIM2e+G4 11342.016 89 22862.033 22916.523 23213.640 186 TIM2e+I+G4 11322.875 90 22825.750 22881.655 23181.308 187 TIM2e+R2 11438.970 90 23057.941 23113.845 23413.499 188 TIM2e+R3 11321.595 92 22827.191 22885.995 23190.650 189 TIM2e+R4 11314.067 94 22816.134 22877.933 23187.494 190 TIM2e+R5 11314.058 96 22820.117 22885.009 23199.379 196 TIM2+F 11876.604 91 23935.207 23992.550 24294.716 197 TIM2+F+I 11613.830 92 23411.659 23470.463 23775.118 198 TIM2+F+G4 11333.935 92 22851.870 22910.674 23215.329 199 TIM2+F+I+G4 11314.853 93 22815.705 22875.995 23183.115 200 TIM2+F+R2 11433.637 93 23053.275 23113.565 23420.685 201 TIM2+F+R3 11314.509 95 22819.017 22882.351 23194.328 202 TIM2+F+R4 11305.979 97 22805.959 22872.434 23189.171 203 TIM2+F+R5 11305.961 99 22809.923 22879.641 23201.036 209 TIM3e 11828.787 88 23833.575 23886.673 24181.231 210 TIM3e+I 11595.355 89 23368.710 23423.200 23720.317 211 TIM3e+G4 11331.800 89 22841.600 22896.090 23193.207 212 TIM3e+I+G4 11313.990 90 22807.979 22863.884 23163.537 213 TIM3e+R2 11425.429 90 23030.858 23086.762 23386.415 214 TIM3e+R3 11309.847 92 22803.694 22862.498 23167.153 215 TIM3e+R4 11304.176 94 22796.353 22858.152 23167.713 222 TIM3+F 11839.952 91 23861.905 23919.247 24221.413 223 TIM3+F+I 11599.086 92 23382.172 23440.977 23745.632 224 TIM3+F+G4 11328.549 92 22841.098 22899.902 23204.557 225 TIM3+F+I+G4 11310.405 93 22806.810 22867.100 23174.220 226 TIM3+F+R2 11425.794 93 23037.588 23097.877 23404.997 227 TIM3+F+R3 11307.863 95 22805.725 22869.059 23181.036 228 TIM3+F+R4 11300.800 97 22795.600 22862.076 23178.813 229 TIM3+F+R5 11300.781 99 22799.563 22869.281 23190.677 235 TVMe 11807.354 89 23792.707 23847.197 24144.315 236 TVMe+I 11577.825 90 23335.650 23391.555 23691.208 237 TVMe+G4 11313.878 90 22807.756 22863.661 23163.314 238 TVMe+I+G4 11296.114 91 22774.227 22831.570 23133.736 239 TVMe+R2 11404.255 91 22990.510 23047.852 23350.018 240 TVMe+R3 11293.640 93 22773.279 22833.569 23140.689 241 TVMe+R4 11288.350 95 22766.701 22830.034 23142.012 248 TVM+F 11818.566 92 23821.132 23879.936 24184.591 249 TVM+F+I 11582.327 93 23350.653 23410.943 23718.063 250 TVM+F+G4 11311.673 93 22809.346 22869.635 23176.756 251 TVM+F+I+G4 11293.643 94 22775.286 22837.085 23146.646 252 TVM+F+R2 11404.990 94 22997.979 23059.779 23369.340 253 TVM+F+R3 11292.899 96 22777.799 22842.691 23157.060 254 TVM+F+R4 11286.261 98 22768.522 22836.606 23155.685 255 TVM+F+R5 11286.240 100 22772.480 22843.858 23167.544 261 SYM 11806.716 90 23793.432 23849.336 24148.990 262 SYM+I 11572.954 91 23327.907 23385.250 23687.416 263 SYM+G4 11312.647 91 22807.294 22864.637 23166.803 264 SYM+I+G4 11294.284 92 22772.568 22831.372 23136.027 265 SYM+R2 11403.561 92 22991.122 23049.926 23354.581 266 SYM+R3 11290.136 94 22768.272 22830.072 23139.633 267 SYM+R4 11285.371 96 22762.741 22827.633 23142.003 274 GTR+F 11817.853 93 23821.707 23881.996 24189.116 275 GTR+F+I 11576.719 94 23341.438 23403.237 23712.798 276 GTR+F+G4 11310.031 94 22808.062 22869.861 23179.422 277 GTR+F+I+G4 11291.245 95 22772.489 22835.823 23147.801 278 GTR+F+R2 11404.058 95 22998.115 23061.449 23373.426 279 GTR+F+R3 11288.676 97 22771.351 22837.827 23154.564 280 GTR+F+R4 11282.635 99 22763.271 22832.989 23154.384 281 GTR+F+R5 11282.621 101 22767.242 22840.306 23166.257 Akaike Information Criterion: SYM+R4 Corrected Akaike Information Criterion: SYM+R4 Bayesian Information Criterion: TVMe+I+G4 Best-fit model: TVMe+I+G4 chosen according to BIC All model information printed to example.phy.model.gz CPU time for ModelFinder: 0.041 seconds (0h:0m:0s) Wall-clock time for ModelFinder: 0.061 seconds (0h:0m:0s) NOTE: 2 MB RAM (0 GB) is required! Estimate model parameters (epsilon = 0.100) Thoroughly optimizing +I+G parameters from 10 start values... Init pinv, alpha: 0.000, 1.000 / Estimate: 0.000, 0.980 / LogL: -11313.879 Init pinv, alpha: 0.012, 1.000 / Estimate: 0.087, 1.704 / LogL: -11296.117 Init pinv, alpha: 0.023, 1.000 / Estimate: 0.087, 1.706 / LogL: -11296.111 Init pinv, alpha: 0.035, 1.000 / Estimate: 0.087, 1.703 / LogL: -11296.113 Init pinv, alpha: 0.046, 1.000 / Estimate: 0.087, 1.707 / LogL: -11296.111 Init pinv, alpha: 0.058, 1.000 / Estimate: 0.087, 1.703 / LogL: -11296.113 Init pinv, alpha: 0.069, 1.000 / Estimate: 0.087, 1.706 / LogL: -11296.110 Init pinv, alpha: 0.081, 1.000 / Estimate: 0.087, 1.709 / LogL: -11296.109 Init pinv, alpha: 0.093, 1.000 / Estimate: 0.087, 1.712 / LogL: -11296.109 Init pinv, alpha: 0.104, 1.000 / Estimate: 0.087, 1.712 / LogL: -11296.110 Optimal pinv,alpha: 0.087, 1.712 / LogL: -11296.109 Parameters optimization took 1.089 sec Computing ML distances based on estimated model parameters... 0.026 sec Computing BIONJ tree... 0.001 seconds Log-likelihood of BIONJ tree: -11258.752 -------------------------------------------------------------------- | INITIALIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Generating 98 parsimony trees... 0.648 second Computing log-likelihood of 98 initial trees ... 1.161 seconds Current best score: -11242.285 Do NNI search on 20 best initial trees Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 1: -11231.841 Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 4: -11226.433 Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 5: -11225.463 Iteration 10 / LogL: -11232.678 / Time: 0h:0m:3s Iteration 20 / LogL: -11231.426 / Time: 0h:0m:4s Finish initializing candidate tree set (17) Current best tree score: -11225.463 / CPU time: 3.653 Number of iterations: 20 -------------------------------------------------------------------- | OPTIMIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 21: -11224.926 Iteration 30 / LogL: -11225.712 / Time: 0h:0m:6s (0h:0m:18s left) Iteration 40 / LogL: -11226.775 / Time: 0h:0m:7s (0h:0m:15s left) UPDATE BEST LOG-LIKELIHOOD: -11224.924 Iteration 50 / LogL: -11227.093 / Time: 0h:0m:8s (0h:0m:12s left) Estimate model parameters (epsilon = 0.100) UPDATE BEST LOG-LIKELIHOOD: -11224.864 Iteration 60 / LogL: -11225.773 / Time: 0h:0m:10s (0h:0m:10s left) Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 63: -11224.364 Iteration 70 / LogL: -11227.052 / Time: 0h:0m:11s (0h:0m:15s left) Iteration 80 / LogL: -11225.077 / Time: 0h:0m:12s (0h:0m:13s left) Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 88: -11224.096 Iteration 90 / LogL: -11224.137 / Time: 0h:0m:13s (0h:0m:15s left) BETTER TREE FOUND at iteration 94: -11224.093 Iteration 100 / LogL: -11224.442 / Time: 0h:0m:15s (0h:0m:14s left) Iteration 110 / LogL: -11225.717 / Time: 0h:0m:16s (0h:0m:12s left) Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 112: -11222.778 Iteration 120 / LogL: -11224.748 / Time: 0h:0m:17s (0h:0m:13s left) Iteration 130 / LogL: -11223.051 / Time: 0h:0m:19s (0h:0m:12s left) Iteration 140 / LogL: -11232.168 / Time: 0h:0m:20s (0h:0m:10s left) Iteration 150 / LogL: -11231.855 / Time: 0h:0m:21s (0h:0m:8s left) Iteration 160 / LogL: -11222.819 / Time: 0h:0m:22s (0h:0m:7s left) Iteration 170 / LogL: -11235.911 / Time: 0h:0m:23s (0h:0m:5s left) Iteration 180 / LogL: -11222.801 / Time: 0h:0m:25s (0h:0m:4s left) Iteration 190 / LogL: -11223.435 / Time: 0h:0m:26s (0h:0m:3s left) Iteration 200 / LogL: -11222.783 / Time: 0h:0m:27s (0h:0m:1s left) Iteration 210 / LogL: -11223.148 / Time: 0h:0m:28s (0h:0m:0s left) TREE SEARCH COMPLETED AFTER 213 ITERATIONS / Time: 0h:0m:29s -------------------------------------------------------------------- | FINALIZING TREE SEARCH | -------------------------------------------------------------------- Performs final model parameters optimization Estimate model parameters (epsilon = 0.010) 1. Initial log-likelihood: -11222.778 Optimal log-likelihood: -11222.776 Rate parameters: A-C: 1.53429 A-G: 2.63873 A-T: 1.69419 C-G: 2.00549 C-T: 2.63873 G-T: 1.00000 Base frequencies: A: 0.250 C: 0.250 G: 0.250 T: 0.250 Proportion of invariable sites: 0.084 Gamma shape alpha: 1.530 Parameters optimization took 1 rounds (0.022 sec) BEST SCORE FOUND : -11222.776 Total tree length: 12.602 Total number of iterations: 213 CPU time used for tree search: 54.695 sec (0h:0m:54s) Wall-clock time used for tree search: 28.113 sec (0h:0m:28s) Total CPU time used: 57.006 sec (0h:0m:57s) Total wall-clock time used: 29.283 sec (0h:0m:29s) Analysis results written to: IQ-TREE report: example.phy.iqtree Maximum-likelihood tree: example.phy.treefile Likelihood distances: example.phy.mldist Screen log file: example.phy.log Date and Time: Wed Jun 29 00:06:45 2022 57.05user 0.93system 0:29.36elapsed 197%CPU (0avgtext+0avgdata 11152maxresident)k 0inputs+320outputs (0major+1235minor)pagefaults 0swaps + rm -rf /tmp/iqtree-test.nNlZaZ 114.40user 2.11system 1:27.90elapsed 132%CPU (0avgtext+0avgdata 11944maxresident)k 0inputs+664outputs (0major+70565minor)pagefaults 0swaps rm example.short make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' dh_auto_install -Bbuild.omp cd build.omp && make -j18 install DESTDIR=/build/iqtree-1.6.12\+dfsg/debian/iqtree AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' /usr/bin/cmake -S/build/iqtree-1.6.12+dfsg -B/build/iqtree-1.6.12+dfsg/build.omp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles /build/iqtree-1.6.12+dfsg/build.omp//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/depend make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/depend make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/depend make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/depend make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/gsl /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/gsl /build/iqtree-1.6.12+dfsg/build.omp/gsl/CMakeFiles/gsl.dir/DependInfo.cmake --color= make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/depend make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/depend make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/lbfgsb /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/lbfgsb /build/iqtree-1.6.12+dfsg/build.omp/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake --color= make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/ncl /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/ncl /build/iqtree-1.6.12+dfsg/build.omp/ncl/CMakeFiles/ncl.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/kernelsse.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pll /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/pll /build/iqtree-1.6.12+dfsg/build.omp/pll/CMakeFiles/pll.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/nclextra /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/nclextra /build/iqtree-1.6.12+dfsg/build.omp/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/whtest /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/whtest /build/iqtree-1.6.12+dfsg/build.omp/whtest/CMakeFiles/whtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/sprng /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/sprng /build/iqtree-1.6.12+dfsg/build.omp/sprng/CMakeFiles/sprng.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/vectorclass /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/vectorclass /build/iqtree-1.6.12+dfsg/build.omp/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'lbfgsb/CMakeFiles/lbfgsb.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/build make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'sprng/CMakeFiles/sprng.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'vectorclass/CMakeFiles/vectorclass.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'gsl/CMakeFiles/gsl.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'nclextra/CMakeFiles/nclextra.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'ncl/CMakeFiles/ncl.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'CMakeFiles/kernelsse.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'pll/CMakeFiles/pll.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 1%] Built target lbfgsb make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'whtest/CMakeFiles/whtest.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 5%] Built target sprng [ 9%] Built target gsl make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/utils /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/utils /build/iqtree-1.6.12+dfsg/build.omp/utils/CMakeFiles/utils.dir/DependInfo.cmake --color= [ 10%] Built target vectorclass [ 22%] Built target ncl [ 23%] Built target nclextra make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/depend [ 25%] Built target kernelsse make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/depend [ 31%] Built target whtest [ 47%] Built target pll make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/alignment /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/alignment /build/iqtree-1.6.12+dfsg/build.omp/alignment/CMakeFiles/alignment.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pda /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/pda /build/iqtree-1.6.12+dfsg/build.omp/pda/CMakeFiles/pda.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'utils/CMakeFiles/utils.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/build [ 52%] Built target utils make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'pda/CMakeFiles/pda.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'alignment/CMakeFiles/alignment.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/model /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/model /build/iqtree-1.6.12+dfsg/build.omp/model/CMakeFiles/model.dir/DependInfo.cmake --color= [ 62%] Built target pda [ 66%] Built target alignment make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'model/CMakeFiles/model.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 83%] Built target model make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/tree /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/tree /build/iqtree-1.6.12+dfsg/build.omp/tree/CMakeFiles/tree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[4]: Nothing to be done for 'tree/CMakeFiles/tree.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 97%] Built target tree make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' cd /build/iqtree-1.6.12+dfsg/build.omp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles/iqtree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' [ 97%] Linking CXX executable iqtree /usr/bin/cmake -E cmake_link_script CMakeFiles/iqtree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/iqtree-1.6.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -m32 -Wl,-z,relro -Wl,-z,now -rdynamic -rdynamic CMakeFiles/iqtree.dir/main/main.cpp.o CMakeFiles/iqtree.dir/main/phyloanalysis.cpp.o CMakeFiles/iqtree.dir/main/phylotesting.cpp.o CMakeFiles/iqtree.dir/obsolete/parsmultistate.cpp.o -o iqtree -L/build/iqtree-1.6.12+dfsg/lib32 -Wl,-rpath,/build/iqtree-1.6.12+dfsg/lib32: pll/libpll.a ncl/libncl.a nclextra/libnclextra.a utils/libutils.a pda/libpda.a lbfgsb/liblbfgsb.a whtest/libwhtest.a sprng/libsprng.a vectorclass/libvectorclass.a model/libmodel.a gsl/libgsl.a alignment/libalignment.a tree/libtree.a -lm libkernelsse.a nclextra/libnclextra.a pll/libpll.a model/libmodel.a utils/libutils.a lbfgsb/liblbfgsb.a -lz alignment/libalignment.a ncl/libncl.a gsl/libgsl.a make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' [100%] Built target iqtree make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.omp/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.omp' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree -- Set runtime path of "/build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree" to "" -- Installing: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./models.nex -- Installing: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.phy -- Installing: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.nex -- Installing: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.cf make[2]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.omp' dh_auto_install -Bbuild.serial cd build.serial && make -j18 install DESTDIR=/build/iqtree-1.6.12\+dfsg/debian/iqtree AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' /usr/bin/cmake -S/build/iqtree-1.6.12+dfsg -B/build/iqtree-1.6.12+dfsg/build.serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles /build/iqtree-1.6.12+dfsg/build.serial//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/depend make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/depend make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/depend make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/depend make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/gsl /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/gsl /build/iqtree-1.6.12+dfsg/build.serial/gsl/CMakeFiles/gsl.dir/DependInfo.cmake --color= make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/depend make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/depend make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/depend make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/lbfgsb /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/lbfgsb /build/iqtree-1.6.12+dfsg/build.serial/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/ncl /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/ncl /build/iqtree-1.6.12+dfsg/build.serial/ncl/CMakeFiles/ncl.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/kernelsse.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pll /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/pll /build/iqtree-1.6.12+dfsg/build.serial/pll/CMakeFiles/pll.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/whtest /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/whtest /build/iqtree-1.6.12+dfsg/build.serial/whtest/CMakeFiles/whtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/nclextra /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/nclextra /build/iqtree-1.6.12+dfsg/build.serial/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/sprng /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/sprng /build/iqtree-1.6.12+dfsg/build.serial/sprng/CMakeFiles/sprng.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/vectorclass /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/vectorclass /build/iqtree-1.6.12+dfsg/build.serial/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'gsl/CMakeFiles/gsl.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'lbfgsb/CMakeFiles/lbfgsb.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/build make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'sprng/CMakeFiles/sprng.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'vectorclass/CMakeFiles/vectorclass.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/build [ 4%] Built target gsl make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'CMakeFiles/kernelsse.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'pll/CMakeFiles/pll.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'nclextra/CMakeFiles/nclextra.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'ncl/CMakeFiles/ncl.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 5%] Built target lbfgsb make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'whtest/CMakeFiles/whtest.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/utils /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/utils /build/iqtree-1.6.12+dfsg/build.serial/utils/CMakeFiles/utils.dir/DependInfo.cmake --color= [ 6%] Built target vectorclass [ 10%] Built target sprng [ 12%] Built target kernelsse [ 15%] Built target nclextra [ 25%] Built target ncl make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/depend make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/depend [ 41%] Built target pll make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pda /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/pda /build/iqtree-1.6.12+dfsg/build.serial/pda/CMakeFiles/pda.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/alignment /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/alignment /build/iqtree-1.6.12+dfsg/build.serial/alignment/CMakeFiles/alignment.dir/DependInfo.cmake --color= [ 47%] Built target whtest make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'utils/CMakeFiles/utils.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/build [ 52%] Built target utils make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'pda/CMakeFiles/pda.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'alignment/CMakeFiles/alignment.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/model /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/model /build/iqtree-1.6.12+dfsg/build.serial/model/CMakeFiles/model.dir/DependInfo.cmake --color= [ 63%] Built target pda [ 66%] Built target alignment make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'model/CMakeFiles/model.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 83%] Built target model make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/tree /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/tree /build/iqtree-1.6.12+dfsg/build.serial/tree/CMakeFiles/tree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'tree/CMakeFiles/tree.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [ 97%] Built target tree make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' cd /build/iqtree-1.6.12+dfsg/build.serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles/iqtree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[4]: Nothing to be done for 'CMakeFiles/iqtree.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' [100%] Built target iqtree make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.serial/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.serial' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree -- Set runtime path of "/build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree" to "" -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./models.nex -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.phy -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.nex -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.cf make[2]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.serial' dh_auto_install -Bbuild.mpi cd build.mpi && make -j18 install DESTDIR=/build/iqtree-1.6.12\+dfsg/debian/iqtree AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' /usr/bin/cmake -S/build/iqtree-1.6.12+dfsg -B/build/iqtree-1.6.12+dfsg/build.mpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles /build/iqtree-1.6.12+dfsg/build.mpi//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/depend make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/depend make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/depend make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/depend make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/depend make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/gsl /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/gsl /build/iqtree-1.6.12+dfsg/build.mpi/gsl/CMakeFiles/gsl.dir/DependInfo.cmake --color= make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/depend make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/depend make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/lbfgsb /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb /build/iqtree-1.6.12+dfsg/build.mpi/lbfgsb/CMakeFiles/lbfgsb.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/ncl /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/ncl /build/iqtree-1.6.12+dfsg/build.mpi/ncl/CMakeFiles/ncl.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/kernelsse.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/nclextra /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/nclextra /build/iqtree-1.6.12+dfsg/build.mpi/nclextra/CMakeFiles/nclextra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/sprng /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/sprng /build/iqtree-1.6.12+dfsg/build.mpi/sprng/CMakeFiles/sprng.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/whtest /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/whtest /build/iqtree-1.6.12+dfsg/build.mpi/whtest/CMakeFiles/whtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/vectorclass /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/vectorclass /build/iqtree-1.6.12+dfsg/build.mpi/vectorclass/CMakeFiles/vectorclass.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pll /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/pll /build/iqtree-1.6.12+dfsg/build.mpi/pll/CMakeFiles/pll.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f gsl/CMakeFiles/gsl.dir/build.make gsl/CMakeFiles/gsl.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'gsl/CMakeFiles/gsl.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f ncl/CMakeFiles/ncl.dir/build.make ncl/CMakeFiles/ncl.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f sprng/CMakeFiles/sprng.dir/build.make sprng/CMakeFiles/sprng.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f lbfgsb/CMakeFiles/lbfgsb.dir/build.make lbfgsb/CMakeFiles/lbfgsb.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f vectorclass/CMakeFiles/vectorclass.dir/build.make vectorclass/CMakeFiles/vectorclass.dir/build make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f CMakeFiles/kernelsse.dir/build.make CMakeFiles/kernelsse.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'lbfgsb/CMakeFiles/lbfgsb.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'vectorclass/CMakeFiles/vectorclass.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'sprng/CMakeFiles/sprng.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 4%] Built target gsl make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'ncl/CMakeFiles/ncl.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f nclextra/CMakeFiles/nclextra.dir/build.make nclextra/CMakeFiles/nclextra.dir/build [ 5%] Built target lbfgsb make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'CMakeFiles/kernelsse.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/depend make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f whtest/CMakeFiles/whtest.dir/build.make whtest/CMakeFiles/whtest.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/utils /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/utils /build/iqtree-1.6.12+dfsg/build.mpi/utils/CMakeFiles/utils.dir/DependInfo.cmake --color= [ 9%] Built target sprng make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'nclextra/CMakeFiles/nclextra.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 10%] Built target vectorclass [ 20%] Built target ncl make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f pll/CMakeFiles/pll.dir/build.make pll/CMakeFiles/pll.dir/build make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'whtest/CMakeFiles/whtest.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/alignment /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/alignment /build/iqtree-1.6.12+dfsg/build.mpi/alignment/CMakeFiles/alignment.dir/DependInfo.cmake --color= [ 22%] Built target kernelsse make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'pll/CMakeFiles/pll.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 25%] Built target nclextra make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/depend make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f utils/CMakeFiles/utils.dir/build.make utils/CMakeFiles/utils.dir/build [ 31%] Built target whtest make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/pda /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/pda /build/iqtree-1.6.12+dfsg/build.mpi/pda/CMakeFiles/pda.dir/DependInfo.cmake --color= [ 47%] Built target pll make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'utils/CMakeFiles/utils.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f alignment/CMakeFiles/alignment.dir/build.make alignment/CMakeFiles/alignment.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'alignment/CMakeFiles/alignment.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f pda/CMakeFiles/pda.dir/build.make pda/CMakeFiles/pda.dir/build [ 52%] Built target utils make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'pda/CMakeFiles/pda.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 56%] Built target alignment make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/model /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/model /build/iqtree-1.6.12+dfsg/build.mpi/model/CMakeFiles/model.dir/DependInfo.cmake --color= [ 66%] Built target pda make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f model/CMakeFiles/model.dir/build.make model/CMakeFiles/model.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'model/CMakeFiles/model.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 83%] Built target model make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/tree /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/tree /build/iqtree-1.6.12+dfsg/build.mpi/tree/CMakeFiles/tree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f tree/CMakeFiles/tree.dir/build.make tree/CMakeFiles/tree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'tree/CMakeFiles/tree.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [ 97%] Built target tree make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/depend make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' cd /build/iqtree-1.6.12+dfsg/build.mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles/iqtree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' make -f CMakeFiles/iqtree.dir/build.make CMakeFiles/iqtree.dir/build make[4]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[4]: Nothing to be done for 'CMakeFiles/iqtree.dir/build'. make[4]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' [100%] Built target iqtree make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' /usr/bin/cmake -E cmake_progress_start /build/iqtree-1.6.12+dfsg/build.mpi/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/iqtree-1.6.12+dfsg/build.mpi' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree-mpi -- Set runtime path of "/build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree-mpi" to "" -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./models.nex -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.phy -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.nex -- Up-to-date: /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/./example.cf make[2]: Leaving directory '/build/iqtree-1.6.12+dfsg/build.mpi' dh override_dh_auto_install make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' dh_install find debian -name iqtree-mpi -exec chrpath --delete \{\} \; find debian -name iqtree-omp -exec chrpath --delete \{\} \; make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' # somehow the example config is installed in /usr by cmake find debian/iqtree -name example.cf -delete dh_installexamples # remove example files in unusual dir rm -f debian/*/usr/models.nex rm -f debian/*/usr/example.[np][eh][xy] make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' debian/rules override_dh_installman make[1]: Entering directory '/build/iqtree-1.6.12+dfsg' mkdir -p /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/share/man/man1/ help2man --no-info --no-discard-stderr --help-option="-h" \ --name='efficient phylogenetic software by maximum likelihood' \ --version-string="1.6.12+dfsg" /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree > /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/share/man/man1//iqtree.1 help2man --no-info --no-discard-stderr --help-option="-h" \ --name='efficient phylogenetic software by maximum likelihood (multiprocessor version)' \ --version-string="1.6.12+dfsg" /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree-omp > /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/share/man/man1//iqtree-omp.1 help2man --no-info --no-discard-stderr --help-option="-h" \ --name='efficient phylogenetic software by maximum likelihood (multiprocessor version)' \ --version-string="1.6.12+dfsg" /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/bin/iqtree-mpi > /build/iqtree-1.6.12+dfsg/debian/iqtree/usr/share/man/man1//iqtree-mpi.1 make[1]: Leaving directory '/build/iqtree-1.6.12+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'iqtree' in '../iqtree_1.6.12+dfsg-1_i386.deb'. dpkg-deb: building package 'iqtree-dbgsym' in '../iqtree-dbgsym_1.6.12+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../iqtree_1.6.12+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/39002 and its subdirectories I: Current time: Wed Jun 29 00:07:49 -12 2022 I: pbuilder-time-stamp: 1656504469 Thu May 27 05:44:52 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Thu May 27 05:44:52 UTC 2021 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Thu May 27 06:06:07 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. Thu May 27 06:06:07 UTC 2021 I: iqtree_1.6.12+dfsg-1_i386.changes: Format: 1.8 Date: Wed, 04 Dec 2019 13:52:57 +0100 Source: iqtree Binary: iqtree iqtree-dbgsym Architecture: i386 Version: 1.6.12+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: iqtree - efficient phylogenetic software by maximum likelihood Changes: iqtree (1.6.12+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 Checksums-Sha1: 649058a032a7336dd91730732fd9afe56ec97622 47499736 iqtree-dbgsym_1.6.12+dfsg-1_i386.deb 8c8754d4bb0665e2728ff39be902f30548239688 7649 iqtree_1.6.12+dfsg-1_i386.buildinfo faaef1987608f888f8edd1ac998fae85473b07ed 2637628 iqtree_1.6.12+dfsg-1_i386.deb Checksums-Sha256: dde2fe7d47d2bcf7ed6ae61bf6af3d94738ffcbe1bb2d468d5ace08114e77fc2 47499736 iqtree-dbgsym_1.6.12+dfsg-1_i386.deb 3caa98c94e5eb709e8e4a6ad95912d11bb268870ff66c8c408d59fd96ddee20b 7649 iqtree_1.6.12+dfsg-1_i386.buildinfo 11f4767ecae5057dabef934d40a0a319dff3ae4c7a6ae207e8d67b487a8e37a9 2637628 iqtree_1.6.12+dfsg-1_i386.deb Files: c342662a5fede176323502565d614ca7 47499736 debug optional iqtree-dbgsym_1.6.12+dfsg-1_i386.deb c939fac7d4fa71d33a2643d154f4df00 7649 science optional iqtree_1.6.12+dfsg-1_i386.buildinfo 4dc3d7b8d9d970c2f030bb6eb622c873 2637628 science optional iqtree_1.6.12+dfsg-1_i386.deb Thu May 27 06:06:10 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.N9BuDt5HdX/iqtree_1.6.12+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.N9BuDt5HdX/iqtree_1.6.12+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.N9BuDt5HdX/iqtree_1.6.12+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.N9BuDt5HdX/b1/iqtree_1.6.12+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.N9BuDt5HdX/b2/iqtree_1.6.12+dfsg-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.562s) 2.562s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.933s) 0.932s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu May 27 06:06:14 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Thu May 27 06:06:14 UTC 2021 I: iqtree from bullseye built successfully and reproducibly on i386. Thu May 27 06:06:16 UTC 2021 I: Submitting .buildinfo files to external archives: Thu May 27 06:06:16 UTC 2021 I: Submitting 12K b1/iqtree_1.6.12+dfsg-1_i386.buildinfo.asc Thu May 27 06:06:16 UTC 2021 I: Submitting 12K b2/iqtree_1.6.12+dfsg-1_i386.buildinfo.asc Thu May 27 06:06:17 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 27 06:06:17 UTC 2021 I: Done submitting .buildinfo files. Thu May 27 06:06:17 UTC 2021 I: Removing signed iqtree_1.6.12+dfsg-1_i386.buildinfo.asc files: removed './b1/iqtree_1.6.12+dfsg-1_i386.buildinfo.asc' removed './b2/iqtree_1.6.12+dfsg-1_i386.buildinfo.asc'