Fri Jul 16 10:42:47 UTC 2021 I: starting to build libbio-tools-run-alignment-clustalw-perl/bullseye/i386 on jenkins on '2021-07-16 10:42' Fri Jul 16 10:42:47 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/14408/console.log Fri Jul 16 10:42:47 UTC 2021 I: Downloading source for bullseye/libbio-tools-run-alignment-clustalw-perl=1.7.4-2 --2021-07-16 10:42:48-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbio-tools-run-alignment-clustalw-perl/libbio-tools-run-alignment-clustalw-perl_1.7.4-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2765 (2.7K) Saving to: ‘libbio-tools-run-alignment-clustalw-perl_1.7.4-2.dsc’ 0K .. 100% 186M=0s 2021-07-16 10:42:48 (186 MB/s) - ‘libbio-tools-run-alignment-clustalw-perl_1.7.4-2.dsc’ saved [2765/2765] Fri Jul 16 10:42:48 UTC 2021 I: libbio-tools-run-alignment-clustalw-perl_1.7.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-tools-run-alignment-clustalw-perl Binary: libbio-tools-run-alignment-clustalw-perl Architecture: all Version: 1.7.4-2 Maintainer: Debian Perl Group Uploaders: David Miguel Susano Pinto Homepage: https://metacpan.org/release/Bio-Tools-Run-Alignment-Clustalw Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-clustalw-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-clustalw-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: clustalw, libbio-perl-perl , libbio-perl-run-perl , libdevel-checkbin-perl, perl Package-List: libbio-tools-run-alignment-clustalw-perl deb science optional arch=all Checksums-Sha1: 926fde7762db2c2e9aa3d94295fb8cf7c9994cc7 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz f68d23050409eebdce3f938e7646b72cf3af545d 2284 libbio-tools-run-alignment-clustalw-perl_1.7.4-2.debian.tar.xz Checksums-Sha256: 4e322d50fd945257f61609ed6e59c3e6817948166a6230d24d5ca23b507e331e 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz 851caa8b7abc30cf221315b9f27721562a238510ac06b77e56b411daadd02f38 2284 libbio-tools-run-alignment-clustalw-perl_1.7.4-2.debian.tar.xz Files: 6820fcb8ca70c5fd75baa4bf979ab274 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz 2929c8b41f59ef99552859b2cb7f58f0 2284 libbio-tools-run-alignment-clustalw-perl_1.7.4-2.debian.tar.xz Dgit: 58cce6b54f5581a46922e4aef37681ee638f5c3f debian archive/debian/1.7.4-2 https://git.dgit.debian.org/libbio-tools-run-alignment-clustalw-perl -----BEGIN PGP SIGNATURE----- iQKTBAEBCgB9FiEE0eExbpOnYKgQTYX6uzpoAYZJqgYFAl+UjFxfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEQx RTEzMTZFOTNBNzYwQTgxMDREODVGQUJCM0E2ODAxODY0OUFBMDYACgkQuzpoAYZJ qgblwhAAtQjWqTYzUiX5aAmRpfGBxGXqJjJvO0pgZCL4oa9/D/GsSxaOLz+7lu9V fAxqtqUiIwva9PDj4zwMJh8KWLWRez1K8uCCKCPlQ1IsfBKUVk2eXmMKvfWnERe1 Z+2uXn8q3vicWOIh0YFyDHfT8TGSb/UJUt8d8pfyJcSRB8n8AdN/hAEysnZXWEAJ gOj9rVG8CnqGQmWrh89rjgmO6Lbg4sHIksfW4Qx9Uxf8NgR5eZK1QzoDILXZSHeF qZotCfkv5utgtiH6fvfiugeZ2ov+T3iFW2cjFLqY095ME5H/70xHnx+Q2xeU3xKC lAZfieDf38Cohguu9WLbhh06PVL4u2+1DXxYw/BqqTiH3ywfmiErcx89n7nUXMgS fusdy0IVvMvLUm7XSvZoTaK0cp3lXGGAkWFDG6EkvjntCUdbC5+i5iuQu8Nmtn0m QSh5LPV++r6bGVbd23Fwb9qfQ1XpIrGi6DHyDdbv+8FFKDjqbfcSZLUGjGeXaQ/r zmy4ZbcfcAOY87Pnk6R6mXdW+JH5f9yJ4eFx1HiAtGZipDlsK3DgHgNtbWnnx3nb zcXqhMFDwsurqquZ7T0ung2Kzfc1EESepKEIZ2+cyBUp7poIGw6aE1TO92jMFXEt ahsrTm0fNMignp+dSSQnNyRwbREhK81gJ7Xl4Sn8P4Xrkx1YZcM= =UYZD -----END PGP SIGNATURE----- Fri Jul 16 10:42:48 UTC 2021 I: Checking whether the package is not for us Fri Jul 16 10:42:48 UTC 2021 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Jul 16 10:42:48 UTC 2021 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Jul 16 10:43:07 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 18 05:05:49 -12 2022 I: pbuilder-time-stamp: 1660842349 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbio-tools-run-alignment-clustalw-perl_1.7.4-2.dsc] I: copying [./libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz] I: copying [./libbio-tools-run-alignment-clustalw-perl_1.7.4-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.AZ3xXi8l/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 24 08:19:40 2020 -12 gpgv: using RSA key D1E1316E93A760A8104D85FABB3A68018649AA06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-tools-run-alignment-clustalw-perl_1.7.4-2.dsc dpkg-source: info: extracting libbio-tools-run-alignment-clustalw-perl in libbio-tools-run-alignment-clustalw-perl-1.7.4 dpkg-source: info: unpacking libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-tools-run-alignment-clustalw-perl_1.7.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doc-typos.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/57340/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='8ee03e048d7d44f9a90b7d408ea484dc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='57340' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.hQ8ICt5JBI/pbuilderrc_nP0o --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.hQ8ICt5JBI/b1 --logfile b1/build.log libbio-tools-run-alignment-clustalw-perl_1.7.4-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Jun 21 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 17 03:48 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/57340/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), clustalw, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-run-perl; however: Package libbio-perl-run-perl is not installed. pbuilder-satisfydepends-dummy depends on libdevel-checkbin-perl; however: Package libdevel-checkbin-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} clustalw{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-perl-run-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-checkbin-perl{a} libelf1{a} libfile-sort-perl{a} libfile-stripnondeterminism-perl{a} libicu67{a} libio-pty-perl{a} libio-string-perl{a} libipc-run-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libace-perl libalgorithm-diff-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After unpacking 80.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 clustalw i386 2.1+lgpl-7 [302 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libio-string-perl all 1.08-3.1 [11.8 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libdata-stag-perl all 0.14-2 [448 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libbio-perl-perl all 1.7.7-2 [2607 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libio-pty-perl i386 1:1.15-2 [37.8 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libipc-run-perl all 20200505.0-1 [102 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libfile-sort-perl all 1.01-2 [21.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libbio-perl-run-perl all 1.7.3-6 [606 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libdevel-checkbin-perl all 0.04-1.1 [4920 B] Fetched 22.7 MB in 0s (78.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... 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Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libdevel-checkbin-perl (0.04-1.1) ... Setting up libicu67:i386 (67.1-7) ... Setting up libio-pty-perl (1:1.15-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libipc-run-perl (20200505.0-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbio-perl-perl (1.7.7-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libfile-sort-perl (1.01-2) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libbio-perl-run-perl (1.7.3-6) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libbio-tools-run-alignment-clustalw-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbio-tools-run-alignment-clustalw-perl dpkg-buildpackage: info: source version 1.7.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by gregor herrmann dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/build/libbio-tools-run-alignment-clustalw-perl-1.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/build/libbio-tools-run-alignment-clustalw-perl-1.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Locating bin:clustalw... found at /usr/bin/clustalw. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Tools::Run::Alignment::Clustalw Writing MYMETA.yml and MYMETA.json dh_auto_build make -j18 make[1]: Entering directory '/build/libbio-tools-run-alignment-clustalw-perl-1.7.4' cp lib/Bio/Tools/Run/Alignment/Clustalw.pm blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm Manifying 1 pod document make[1]: Leaving directory '/build/libbio-tools-run-alignment-clustalw-perl-1.7.4' dh_auto_test make -j18 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-tools-run-alignment-clustalw-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/Tools/Run/Alignment/Clustalw.pm loaded ok ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-no-tabs.t ....... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/Clustalw.t ............. ok 1 - Found input file ok 2 - Found profile1 file ok 3 - Found profile2 file ok 4 - An object of class 'Bio::Tools::Run::Alignment::Clustalw' isa 'Bio::Tools::Run::Alignment::Clustalw' ok 5 - program_dir returned correct default ok 6 - error_string returned correct default ok 7 - outfile_name returned correct default ok 8 - bootstrap returned correct default ok 9 - Correct exe default name ok 10 - check clustalw version 2.1 is less than 1.8 ok 11 - No error occured ok 12 - outfile_name returned something ok 13 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 14 - Correct number of seqs returned ok 15 - Score ok 16 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 17 - Correct number of seqs returned ok 18 - Got correct sequence by position ok 19 - An object of class 'Bio::Tree::Tree' isa 'Bio::Tree::Tree' ok 20 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 21 - Correct number of seqs returned ok 22 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 23 - An object of class 'Bio::Tree::Tree' isa 'Bio::Tree::Tree' ok 24 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 25 - An object of class 'Bio::Tree::Tree' isa 'Bio::Tree::Tree' ok 26 - footprinting worked ok 27 - Got correct sequence by position ok 28 - Got correct sequence by position ok 29 - Set and got ktuple correctly ok 30 - Set and got topdiags correctly ok 31 - Set and got window correctly ok 32 - Set and got pairgap correctly ok 33 - Set and got fixedgap correctly ok 34 - Set and got floatgap correctly ok 35 - Set and got matrix correctly ok 36 - Set and got type correctly ok 37 - Set and got output correctly ok 38 - Set and got outfile correctly ok 39 - set and got quiet correctly ok 40 - set and got bootstrap correctly 1..40 ok All tests successful. Files=7, Tests=41, 1 wallclock secs ( 0.04 usr 0.00 sys + 1.10 cusr 0.08 csys = 1.22 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-tools-run-alignment-clustalw-perl-1.7.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j18 install DESTDIR=/build/libbio-tools-run-alignment-clustalw-perl-1.7.4/debian/libbio-tools-run-alignment-clustalw-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-tools-run-alignment-clustalw-perl-1.7.4' Manifying 1 pod document Installing /build/libbio-tools-run-alignment-clustalw-perl-1.7.4/debian/libbio-tools-run-alignment-clustalw-perl/usr/share/perl5/Bio/Tools/Run/Alignment/Clustalw.pm Installing /build/libbio-tools-run-alignment-clustalw-perl-1.7.4/debian/libbio-tools-run-alignment-clustalw-perl/usr/share/man/man3/Bio::Tools::Run::Alignment::Clustalw.3pm make[1]: Leaving directory '/build/libbio-tools-run-alignment-clustalw-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-tools-run-alignment-clustalw-perl' in '../libbio-tools-run-alignment-clustalw-perl_1.7.4-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/57340 and its subdirectories I: Current time: Thu Aug 18 05:06:07 -12 2022 I: pbuilder-time-stamp: 1660842367 Fri Jul 16 10:43:08 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Fri Jul 16 10:43:08 UTC 2021 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Fri Jul 16 10:46:56 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. Fri Jul 16 10:46:57 UTC 2021 I: libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.changes: Format: 1.8 Date: Sat, 24 Oct 2020 22:10:26 +0200 Source: libbio-tools-run-alignment-clustalw-perl Binary: libbio-tools-run-alignment-clustalw-perl Architecture: all Version: 1.7.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: gregor herrmann Description: libbio-tools-run-alignment-clustalw-perl - Bioperl interface to Clustal W Changes: libbio-tools-run-alignment-clustalw-perl (1.7.4-2) unstable; urgency=medium . * Team upload. * Source-only upload. . [ gregor herrmann ] * debian/watch: use uscan version 4. . [ Debian Janitor ] * Bump debhelper from old 10 to 12. * Set debhelper-compat version in Build-Depends. . [ gregor herrmann ] * Declare compliance with Debian Policy 4.5.0. * Set Rules-Requires-Root: no. * Annotate test-only build dependencies with . * Bump debhelper-compat to 13. Checksums-Sha1: c1895c65d818aeabfa1095c00109538925a2795e 24528 libbio-tools-run-alignment-clustalw-perl_1.7.4-2_all.deb c3ee607810dbc4c8f0b7ef2614eff233e4232662 5032 libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo Checksums-Sha256: 7a4bd42e33c2eb21b4f97e0ce29b72bca876711ccf21717f429a5afbf1a08671 24528 libbio-tools-run-alignment-clustalw-perl_1.7.4-2_all.deb 6d58bf719fa1d7c56df57c1cae16221c51d511bf41d32dd04ec43193f7e49a49 5032 libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo Files: 6fc8c97dfbacb70f5e46a6695cf13364 24528 science optional libbio-tools-run-alignment-clustalw-perl_1.7.4-2_all.deb c5a0054b4273b25fc3d06088e757b927 5032 science optional libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo Fri Jul 16 10:46:58 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.hQ8ICt5JBI/libbio-tools-run-alignment-clustalw-perl_1.7.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.hQ8ICt5JBI/libbio-tools-run-alignment-clustalw-perl_1.7.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.hQ8ICt5JBI/libbio-tools-run-alignment-clustalw-perl_1.7.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.hQ8ICt5JBI/b1/libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.hQ8ICt5JBI/b2/libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.286s) 0.286s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 16 10:47:00 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 16 10:47:00 UTC 2021 I: libbio-tools-run-alignment-clustalw-perl from bullseye built successfully and reproducibly on i386. Fri Jul 16 10:47:01 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jul 16 10:47:01 UTC 2021 I: Submitting 8.0K b1/libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo.asc Fri Jul 16 10:47:02 UTC 2021 I: Submitting 8.0K b2/libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo.asc Fri Jul 16 10:47:02 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 16 10:47:02 UTC 2021 I: Done submitting .buildinfo files. Fri Jul 16 10:47:02 UTC 2021 I: Removing signed libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo.asc files: removed './b1/libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo.asc' removed './b2/libbio-tools-run-alignment-clustalw-perl_1.7.4-2_i386.buildinfo.asc'