Wed Sep 8 08:17:38 UTC 2021 I: starting to build python-cobra/bullseye/i386 on jenkins on '2021-09-08 08:17' Wed Sep 8 08:17:38 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/22734/console.log Wed Sep 8 08:17:38 UTC 2021 I: Downloading source for bullseye/python-cobra=0.21.0-1 --2021-09-08 08:17:39-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-cobra/python-cobra_0.21.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3071 (3.0K) Saving to: ‘python-cobra_0.21.0-1.dsc’ 0K .. 100% 182M=0s 2021-09-08 08:17:39 (182 MB/s) - ‘python-cobra_0.21.0-1.dsc’ saved [3071/3071] Wed Sep 8 08:17:39 UTC 2021 I: python-cobra_0.21.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cobra Binary: python3-cobra, python-cobra-data Architecture: any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all Version: 0.21.0-1 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://opencobra.github.io/cobrapy/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: make, python3-jsonschema, python3-pytest, python3-pytest-benchmark, python3-sbml5, python3-scipy Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest , python3-pytest-benchmark , python3-jsonschema (>> 2.5.0) , libsbml5 , python3-matplotlib , python3-appdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich Package-List: python-cobra-data deb python optional arch=all python3-cobra deb python optional arch=any-amd64,arm64,armel,armhf,any-i386,mips,mips64el,mipsel,ppc64el,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: fec54b33c1b20d8555fea158b8b82ac3034a655e 2572526 python-cobra_0.21.0.orig.tar.gz 03c8ab7e324f8f0849a7a837674090e26574eff1 8964 python-cobra_0.21.0-1.debian.tar.xz Checksums-Sha256: fa67f720f2c15b99869b75d5344e6754631ed28b6337b0b11da3e5fa9a9c65ae 2572526 python-cobra_0.21.0.orig.tar.gz 24c0e447bf5e758f0c482f793544fdff97d712aa21f79c907e7fa20665d3ba65 8964 python-cobra_0.21.0-1.debian.tar.xz Files: d5b048d09fbd42a58d6b05f617b33021 2572526 python-cobra_0.21.0.orig.tar.gz ed5755d5d78308a980adb37778cae69b 8964 python-cobra_0.21.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAiQt8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHWyQ/9GNUdBMhnr1xVYVeyYP59XmXDFaleCEcH +/N+CEMCWiyuMjsfpsn0QWYB8hbAx7jznF8evzEgC37zujXEFQ6mRi55ZlhB93uL i1g8iLg5fErwWkAR7uVudaY5gMjcdraaY+5deDgzf2JYYlztSXp3iWfeoyQlLWuK Dj1f/Eph2y9fcueHug5A8zAmQ3uO1ZF0eiK60dnCZKGqkn6KgRBE7CB/9kueG2eG UOdD4sgLsgkUXp4/MZqNZhfJek77LtGAQj+FBn4oUvcIxgqyIuAjMJaWWO5ybM8E m7+PrqHu58ND760YNR4w0c4mAe5+/Ib85uUh2LD3ICmxyD587EA3OctIxzpzSWKp byv1lutb1fsp7oLC+X6Fk/uVFUm6Yrq7tUvO9suPoDoEMLjMxTtZR0pLMHfS9jP+ S6uW813ZbwOqMgM+t7laWS8JBiNevgT7E7SJCfOl9Nt3ncPrDbDhJWCzrD1PQ4az arfWoNO1v0SOWRMaIlbNQ2t1ri0QjMf0VGZ4ZqaJM9GPPmRUyj3O4q7lYQRG0kRe fxC2mSCkGNqVrxPCc8/1nmhAqo0FUAXg+KLSPpeuvNJauq5BTRjj0SE7o/AAUOQc QBkMTjUcasIc/OYYTmGUYXZxJeOX0NH+2wwRAOQV3mBApGN4/CfjhkK653TltUfD DUtNfIDi3yk= =W3AZ -----END PGP SIGNATURE----- Wed Sep 8 08:17:39 UTC 2021 I: Checking whether the package is not for us Wed Sep 8 08:17:39 UTC 2021 I: Starting 1st build on remote node ionos16-i386.debian.net. Wed Sep 8 08:17:39 UTC 2021 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Wed Sep 8 08:19:02 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 11 02:40:40 -12 2022 I: pbuilder-time-stamp: 1665499240 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-cobra_0.21.0-1.dsc] I: copying [./python-cobra_0.21.0.orig.tar.gz] I: copying [./python-cobra_0.21.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.HP0VyjQy/trustedkeys.kbx': General error gpgv: Signature made Mon Feb 8 20:07:59 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-cobra_0.21.0-1.dsc dpkg-source: info: extracting python-cobra in python-cobra-0.21.0 dpkg-source: info: unpacking python-cobra_0.21.0.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.21.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying no_importlib_resources_for_test.patch dpkg-source: info: applying xfail_test_show_versions.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/60818/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c2b407957f7b4b0dae003b9eabf06b79' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='60818' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.VguQbRY72n/pbuilderrc_Ml2C --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.VguQbRY72n/b1 --logfile b1/build.log python-cobra_0.21.0-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Aug 4 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jul 28 2021 more -rwsr-xr-x 1 root root 50720 Jul 28 2021 mount -rwxr-xr-x 1 root root 13856 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Oct 10 03:46 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jul 28 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jul 28 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/60818/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang; however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 0.17.0); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 4.65.1); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema (>> 2.5.0); however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5; however: Package libsbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-appdirs; however: Package python3-appdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd2{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcxsparse3{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphblas3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libklu1{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldl2{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmetis5{a} libmongoose2{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librbio2{a} libreadline8{a} libsbml5{a} libsigsegv2{a} libsliplu1{a} libspqr2{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libtiff5{a} libtool{a} libuchardet0{a} libumfpack5{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python-pip-whl{a} python3{a} python3-appdirs{a} python3-attr{a} python3-certifi{a} python3-chardet{a} python3-colorama{a} python3-commonmark{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-distutils{a} python3-future{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-jsonschema{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pydantic{a} python3-pygments{a} python3-pyparsing{a} python3-pyrsistent{a} python3-pytest{a} python3-pytest-benchmark{a} python3-requests{a} python3-rfc3986{a} python3-rich{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-toml{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} ttf-bitstream-vera{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-elasticsearch python3-freezegun python3-graphviz python3-html5lib python3-jinja2 python3-lxml python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygal python3-scipy python3-tables python3-tk python3-xlwt wget 0 packages upgraded, 173 newly installed, 0 to remove and 0 not upgraded. Need to get 96.1 MB of archives. After unpacking 557 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1k-1 [860 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 cython3 i386 0.29.21-3+b1 [1303 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 fonts-lyx all 2.3.6-1 [205 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libsuitesparseconfig5 i386 1:5.8.1+dfsg-2 [23.1 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libamd2 i386 1:5.8.1+dfsg-2 [30.7 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libblas-dev i386 3.9.0-3 [157 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libbtf1 i386 1:5.8.1+dfsg-2 [23.6 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libcamd2 i386 1:5.8.1+dfsg-2 [31.2 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libccolamd2 i386 1:5.8.1+dfsg-2 [32.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libcolamd2 i386 1:5.8.1+dfsg-2 [27.9 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libmetis5 i386 5.1.0.dfsg-7 [171 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libcholmod3 i386 1:5.8.1+dfsg-2 [242 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libcxsparse3 i386 1:5.8.1+dfsg-2 [64.3 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libglpk40 i386 5.0-1 [425 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libgmpxx4ldbl i386 2:6.2.1+dfsg-1 [338 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libgmp-dev i386 2:6.2.1+dfsg-1 [658 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libgraphblas3 i386 1:5.8.1+dfsg-2 [6146 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libklu1 i386 1:5.8.1+dfsg-2 [57.5 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libldl2 i386 1:5.8.1+dfsg-2 [23.4 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libmongoose2 i386 1:5.8.1+dfsg-2 [49.4 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libumfpack5 i386 1:5.8.1+dfsg-2 [156 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 librbio2 i386 1:5.8.1+dfsg-2 [34.4 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libspqr2 i386 1:5.8.1+dfsg-2 [83.5 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libsliplu1 i386 1:5.8.1+dfsg-2 [56.5 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libsuitesparse-dev i386 1:5.8.1+dfsg-2 [6444 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libglpk-dev i386 5.0-1 [511 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libimagequant0 i386 2.12.2-1.1 [32.4 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libsbml5 i386 5.19.0+dfsg-1 [2248 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1 [269 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1 [305 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libwebpdemux2 i386 0.6.1-2.1 [88.2 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libwebpmux3 i386 0.6.1-2.1 [99.0 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 python-pip-whl all 20.3.4-4 [1948 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 python3-appdirs all 1.4.4-1 [12.7 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 python3-attr all 20.3.0-1 [52.9 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 python3-certifi all 2020.6.20-1 [151 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 python3-chardet all 4.0.0-1 [99.0 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 python3-colorama all 0.4.4-1 [28.5 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 python3-commonmark all 0.9.1-3 [44.9 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 python3-cpuinfo all 5.0.0-2 [19.0 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-2 [17.5 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 python3-cycler all 0.10.0-3 [8084 B] Get: 121 http://deb.debian.org/debian bullseye/main i386 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 python3-depinfo i386 1.6.0-1 [5920 B] Get: 123 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 python3-diskcache all 5.2.1-2 [544 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 python3-future all 0.18.2-5 [349 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 python3-h11 all 0.12.0-1 [47.9 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 python3-sniffio all 1.1.0-1 [6216 B] Get: 129 http://deb.debian.org/debian bullseye/main i386 python3-httpcore all 0.12.3-1 [30.3 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 python3-idna all 2.10-1 [37.4 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 python3-rfc3986 all 1.4.0-3 [21.8 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 python3-httpx all 0.16.1-1 [65.5 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 python3-zipp all 1.0.0-3 [6060 B] Get: 135 http://deb.debian.org/debian bullseye/main i386 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 python3-iniconfig all 1.1.1-1 [6308 B] Get: 137 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 python3-pyrsistent i386 0.15.5-1+b3 [59.3 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 python3-jsonschema all 3.2.0-3 [46.3 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 python3-kiwisolver i386 1.3.1-1+b1 [58.5 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 python3-pyparsing all 2.4.7-1 [109 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 python3-pil i386 8.1.2+dfsg-0.3 [445 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 python3-matplotlib i386 3.3.4-1 [4165 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 python3-mpmath all 1.2.1-1 [418 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 python3-swiglpk i386 4.65.1-1 [64.3 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 python3-sympy all 1.7.1-3 [4031 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 python3-optlang all 1.4.4-2 [67.7 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 python3-packaging all 20.9-2 [33.5 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 python3-tz all 2021.1-1 [34.8 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 python3-pandas-lib i386 1.1.5+dfsg-2 [3182 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 python3-wheel all 0.34.2-1 [24.0 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 python3-pip all 20.3.4-4 [337 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 python3-pipdeptree i386 2.0.0-1 [20.3 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 157 http://deb.debian.org/debian bullseye/main i386 python3-py all 1.10.0-1 [94.2 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 python3-pydantic all 1.7.4-1 [119 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 python3-toml all 0.10.1-1 [15.9 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 python3-pytest all 6.0.2-2 [211 kB] Get: 162 http://deb.debian.org/debian bullseye/main i386 python3-pytest-benchmark all 3.2.2-2 [46.4 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 python3-typing-extensions all 3.7.4.3-1 [29.8 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 python3-rich all 9.11.0-1 [150 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 python3-ruamel.yaml.clib i386 0.2.2-1+b2 [122 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 python3-ruamel.yaml all 0.16.12-2 [110 kB] Get: 169 http://deb.debian.org/debian bullseye/main i386 swig4.0 i386 4.0.2-1 [1443 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 swig all 4.0.2-1 [330 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 python3-sbml5 i386 5.19.0+dfsg-1 [3476 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 python3-simplejson i386 3.17.2-1 [62.8 kB] Get: 173 http://deb.debian.org/debian bullseye/main i386 python3-tabulate all 0.8.7-0.1 [33.8 kB] Fetched 96.1 MB in 1s (69.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_i386.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../6-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../4-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../6-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_i386.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_i386.deb ... Unpacking libpython3-stdlib:i386 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20987 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_1.1.1k-1_i386.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../008-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../009-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../010-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../011-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../012-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../013-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cython3. Preparing to unpack .../014-cython3_0.29.21-3+b1_i386.deb ... Unpacking cython3 (0.29.21-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../015-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../016-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../017-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../018-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../019-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../020-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../021-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../022-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../023-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../024-libicu67_67.1-7_i386.deb ... Unpacking libicu67:i386 (67.1-7) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../025-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../026-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../027-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../028-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../029-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../030-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../031-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../032-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../033-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libsuitesparseconfig5:i386. Preparing to unpack .../034-libsuitesparseconfig5_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libsuitesparseconfig5:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libamd2:i386. Preparing to unpack .../035-libamd2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libamd2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../036-libblas3_3.9.0-3_i386.deb ... Unpacking libblas3:i386 (3.9.0-3) ... Selecting previously unselected package libblas-dev:i386. Preparing to unpack .../037-libblas-dev_3.9.0-3_i386.deb ... Unpacking libblas-dev:i386 (3.9.0-3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../038-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libmd0:i386. Preparing to unpack .../039-libmd0_1.0.3-3_i386.deb ... Unpacking libmd0:i386 (1.0.3-3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../040-libbsd0_0.11.3-1_i386.deb ... Unpacking libbsd0:i386 (0.11.3-1) ... Selecting previously unselected package libbtf1:i386. Preparing to unpack .../041-libbtf1_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libbtf1:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libcamd2:i386. Preparing to unpack .../042-libcamd2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libcamd2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libccolamd2:i386. Preparing to unpack .../043-libccolamd2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libccolamd2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libcolamd2:i386. Preparing to unpack .../044-libcolamd2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libcolamd2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../045-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../046-liblapack3_3.9.0-3_i386.deb ... Unpacking liblapack3:i386 (3.9.0-3) ... Selecting previously unselected package libmetis5:i386. Preparing to unpack .../047-libmetis5_5.1.0.dfsg-7_i386.deb ... Unpacking libmetis5:i386 (5.1.0.dfsg-7) ... Selecting previously unselected package libcholmod3:i386. Preparing to unpack .../048-libcholmod3_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libcholmod3:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libcxsparse3:i386. Preparing to unpack .../049-libcxsparse3_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libcxsparse3:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../050-libdeflate0_1.7-1_i386.deb ... Unpacking libdeflate0:i386 (1.7-1) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../051-libexpat1-dev_2.2.10-2_i386.deb ... Unpacking libexpat1-dev:i386 (2.2.10-2) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../052-libpng16-16_1.6.37-3_i386.deb ... Unpacking libpng16-16:i386 (1.6.37-3) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../053-libfreetype6_2.10.4+dfsg-1_i386.deb ... Unpacking libfreetype6:i386 (2.10.4+dfsg-1) ... Selecting previously unselected package libltdl7:i386. Preparing to unpack .../054-libltdl7_2.4.6-15_i386.deb ... Unpacking libltdl7:i386 (2.4.6-15) ... Selecting previously unselected package libglpk40:i386. Preparing to unpack .../055-libglpk40_5.0-1_i386.deb ... Unpacking libglpk40:i386 (5.0-1) ... Selecting previously unselected package libgmpxx4ldbl:i386. Preparing to unpack .../056-libgmpxx4ldbl_2%3a6.2.1+dfsg-1_i386.deb ... Unpacking libgmpxx4ldbl:i386 (2:6.2.1+dfsg-1) ... Selecting previously unselected package libgmp-dev:i386. Preparing to unpack .../057-libgmp-dev_2%3a6.2.1+dfsg-1_i386.deb ... Unpacking libgmp-dev:i386 (2:6.2.1+dfsg-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../058-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libgraphblas3:i386. Preparing to unpack .../059-libgraphblas3_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libgraphblas3:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libklu1:i386. Preparing to unpack .../060-libklu1_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libklu1:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libldl2:i386. Preparing to unpack .../061-libldl2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libldl2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libmongoose2:i386. Preparing to unpack .../062-libmongoose2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libmongoose2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libumfpack5:i386. Preparing to unpack .../063-libumfpack5_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libumfpack5:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package librbio2:i386. Preparing to unpack .../064-librbio2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking librbio2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libspqr2:i386. Preparing to unpack .../065-libspqr2_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libspqr2:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libsliplu1:i386. Preparing to unpack .../066-libsliplu1_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libsliplu1:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package liblapack-dev:i386. Preparing to unpack .../067-liblapack-dev_3.9.0-3_i386.deb ... Unpacking liblapack-dev:i386 (3.9.0-3) ... Selecting previously unselected package libsuitesparse-dev:i386. Preparing to unpack .../068-libsuitesparse-dev_1%3a5.8.1+dfsg-2_i386.deb ... Unpacking libsuitesparse-dev:i386 (1:5.8.1+dfsg-2) ... Selecting previously unselected package libglpk-dev:i386. Preparing to unpack .../069-libglpk-dev_5.0-1_i386.deb ... Unpacking libglpk-dev:i386 (5.0-1) ... Selecting previously unselected package libimagequant0:i386. Preparing to unpack .../070-libimagequant0_2.12.2-1.1_i386.deb ... Unpacking libimagequant0:i386 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../071-libjbig0_2.1-3.1+b2_i386.deb ... Unpacking libjbig0:i386 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../072-libjpeg62-turbo_1%3a2.0.6-4_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.0.6-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../073-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../074-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../075-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../076-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../077-liblcms2-2_2.12~rc1-2_i386.deb ... Unpacking liblcms2-2:i386 (2.12~rc1-2) ... Selecting previously unselected package libpython3.9:i386. Preparing to unpack .../078-libpython3.9_3.9.2-1_i386.deb ... Unpacking libpython3.9:i386 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:i386. Preparing to unpack .../079-libpython3.9-dev_3.9.2-1_i386.deb ... Unpacking libpython3.9-dev:i386 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../080-libpython3-dev_3.9.2-3_i386.deb ... Unpacking libpython3-dev:i386 (3.9.2-3) ... Selecting previously unselected package libsbml5. Preparing to unpack .../081-libsbml5_5.19.0+dfsg-1_i386.deb ... Unpacking libsbml5 (5.19.0+dfsg-1) ... Selecting previously unselected package libwebp6:i386. Preparing to unpack .../082-libwebp6_0.6.1-2.1_i386.deb ... Unpacking libwebp6:i386 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:i386. Preparing to unpack .../083-libtiff5_4.2.0-1_i386.deb ... Unpacking libtiff5:i386 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:i386. Preparing to unpack .../084-libwebpdemux2_0.6.1-2.1_i386.deb ... Unpacking libwebpdemux2:i386 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:i386. Preparing to unpack .../085-libwebpmux3_0.6.1-2.1_i386.deb ... Unpacking libwebpmux3:i386 (0.6.1-2.1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../086-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../087-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../088-libxcb1_1.14-3_i386.deb ... Unpacking libxcb1:i386 (1.14-3) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../089-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../090-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python-pip-whl. Preparing to unpack .../091-python-pip-whl_20.3.4-4_all.deb ... Unpacking python-pip-whl (20.3.4-4) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../092-python3-appdirs_1.4.4-1_all.deb ... Unpacking python3-appdirs (1.4.4-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../093-python3-attr_20.3.0-1_all.deb ... Unpacking python3-attr (20.3.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../094-python3-certifi_2020.6.20-1_all.deb ... Unpacking python3-certifi (2020.6.20-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../095-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../096-python3-chardet_4.0.0-1_all.deb ... Unpacking python3-chardet (4.0.0-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../097-python3-colorama_0.4.4-1_all.deb ... Unpacking python3-colorama (0.4.4-1) ... Selecting previously unselected package python3-commonmark. Preparing to unpack .../098-python3-commonmark_0.9.1-3_all.deb ... Unpacking python3-commonmark (0.9.1-3) ... Selecting previously unselected package python3-cpuinfo. Preparing to unpack .../099-python3-cpuinfo_5.0.0-2_all.deb ... Unpacking python3-cpuinfo (5.0.0-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../100-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../101-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../102-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-depinfo. Preparing to unpack .../103-python3-depinfo_1.6.0-1_i386.deb ... Unpacking python3-depinfo (1.6.0-1) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../104-python3.9-dev_3.9.2-1_i386.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../105-python3-dev_3.9.2-3_i386.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-diskcache. Preparing to unpack .../106-python3-diskcache_5.2.1-2_all.deb ... Unpacking python3-diskcache (5.2.1-2) ... Selecting previously unselected package python3-future. Preparing to unpack .../107-python3-future_0.18.2-5_all.deb ... Unpacking python3-future (0.18.2-5) ... Selecting previously unselected package python3-h11. Preparing to unpack .../108-python3-h11_0.12.0-1_all.deb ... Unpacking python3-h11 (0.12.0-1) ... Selecting previously unselected package python3-sniffio. Preparing to unpack .../109-python3-sniffio_1.1.0-1_all.deb ... Unpacking python3-sniffio (1.1.0-1) ... Selecting previously unselected package python3-httpcore. Preparing to unpack .../110-python3-httpcore_0.12.3-1_all.deb ... Unpacking python3-httpcore (0.12.3-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../111-python3-idna_2.10-1_all.deb ... Unpacking python3-idna (2.10-1) ... Selecting previously unselected package python3-rfc3986. Preparing to unpack .../112-python3-rfc3986_1.4.0-3_all.deb ... Unpacking python3-rfc3986 (1.4.0-3) ... Selecting previously unselected package python3-httpx. Preparing to unpack .../113-python3-httpx_0.16.1-1_all.deb ... Unpacking python3-httpx (0.16.1-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../114-python3-more-itertools_4.2.0-3_all.deb ... Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../115-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../116-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../117-python3-iniconfig_1.1.1-1_all.deb ... Unpacking python3-iniconfig (1.1.1-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../118-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-pyrsistent:i386. Preparing to unpack .../119-python3-pyrsistent_0.15.5-1+b3_i386.deb ... Unpacking python3-pyrsistent:i386 (0.15.5-1+b3) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../120-python3-jsonschema_3.2.0-3_all.deb ... Unpacking python3-jsonschema (3.2.0-3) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../121-python3-kiwisolver_1.3.1-1+b1_i386.deb ... Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../122-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../123-python3-numpy_1%3a1.19.5-1_i386.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pil:i386. Preparing to unpack .../124-python3-pil_8.1.2+dfsg-0.3_i386.deb ... Unpacking python3-pil:i386 (8.1.2+dfsg-0.3) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../125-python3-matplotlib_3.3.4-1_i386.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../126-python3-mpmath_1.2.1-1_all.deb ... Unpacking python3-mpmath (1.2.1-1) ... Selecting previously unselected package python3-swiglpk. Preparing to unpack .../127-python3-swiglpk_4.65.1-1_i386.deb ... Unpacking python3-swiglpk (4.65.1-1) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../128-python3-sympy_1.7.1-3_all.deb ... Unpacking python3-sympy (1.7.1-3) ... Selecting previously unselected package python3-optlang. Preparing to unpack .../129-python3-optlang_1.4.4-2_all.deb ... Unpacking python3-optlang (1.4.4-2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../130-python3-packaging_20.9-2_all.deb ... Unpacking python3-packaging (20.9-2) ... Selecting previously unselected package python3-tz. Preparing to unpack .../131-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-pandas-lib:i386. Preparing to unpack .../132-python3-pandas-lib_1.1.5+dfsg-2_i386.deb ... Unpacking python3-pandas-lib:i386 (1.1.5+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../133-python3-pandas_1.1.5+dfsg-2_all.deb ... Unpacking python3-pandas (1.1.5+dfsg-2) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../134-python3-wheel_0.34.2-1_all.deb ... Unpacking python3-wheel (0.34.2-1) ... Selecting previously unselected package python3-pip. Preparing to unpack .../135-python3-pip_20.3.4-4_all.deb ... Unpacking python3-pip (20.3.4-4) ... Selecting previously unselected package python3-pipdeptree. Preparing to unpack .../136-python3-pipdeptree_2.0.0-1_i386.deb ... Unpacking python3-pipdeptree (2.0.0-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../137-python3-pluggy_0.13.0-6_all.deb ... Unpacking python3-pluggy (0.13.0-6) ... Selecting previously unselected package python3-py. Preparing to unpack .../138-python3-py_1.10.0-1_all.deb ... Unpacking python3-py (1.10.0-1) ... Selecting previously unselected package python3-pydantic. Preparing to unpack .../139-python3-pydantic_1.7.4-1_all.deb ... Unpacking python3-pydantic (1.7.4-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../140-python3-pygments_2.7.1+dfsg-2.1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2.1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../141-python3-toml_0.10.1-1_all.deb ... Unpacking python3-toml (0.10.1-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../142-python3-pytest_6.0.2-2_all.deb ... Unpacking python3-pytest (6.0.2-2) ... Selecting previously unselected package python3-pytest-benchmark. Preparing to unpack .../143-python3-pytest-benchmark_3.2.2-2_all.deb ... Unpacking python3-pytest-benchmark (3.2.2-2) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../144-python3-urllib3_1.26.5-1~exp1_all.deb ... Unpacking python3-urllib3 (1.26.5-1~exp1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../145-python3-requests_2.25.1+dfsg-2_all.deb ... Unpacking python3-requests (2.25.1+dfsg-2) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../146-python3-typing-extensions_3.7.4.3-1_all.deb ... Unpacking python3-typing-extensions (3.7.4.3-1) ... Selecting previously unselected package python3-rich. Preparing to unpack .../147-python3-rich_9.11.0-1_all.deb ... Unpacking python3-rich (9.11.0-1) ... Selecting previously unselected package python3-ruamel.yaml.clib:i386. Preparing to unpack .../148-python3-ruamel.yaml.clib_0.2.2-1+b2_i386.deb ... Unpacking python3-ruamel.yaml.clib:i386 (0.2.2-1+b2) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../149-python3-ruamel.yaml_0.16.12-2_all.deb ... Unpacking python3-ruamel.yaml (0.16.12-2) ... Selecting previously unselected package swig4.0. Preparing to unpack .../150-swig4.0_4.0.2-1_i386.deb ... Unpacking swig4.0 (4.0.2-1) ... Selecting previously unselected package swig. Preparing to unpack .../151-swig_4.0.2-1_all.deb ... Unpacking swig (4.0.2-1) ... Selecting previously unselected package python3-sbml5. Preparing to unpack .../152-python3-sbml5_5.19.0+dfsg-1_i386.deb ... Unpacking python3-sbml5 (5.19.0+dfsg-1) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../153-python3-simplejson_3.17.2-1_i386.deb ... Unpacking python3-simplejson (3.17.2-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../154-python3-tabulate_0.8.7-0.1_all.deb ... Unpacking python3-tabulate (0.8.7-0.1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up liblcms2-2:i386 (2.12~rc1-2) ... Setting up libgraphblas3:i386 (1:5.8.1+dfsg-2) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libldl2:i386 (1:5.8.1+dfsg-2) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libmetis5:i386 (5.1.0.dfsg-7) ... Setting up file (1:5.39-3) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up libbtf1:i386 (1:5.8.1+dfsg-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libgmpxx4ldbl:i386 (2:6.2.1+dfsg-1) ... Setting up libexpat1-dev:i386 (2.2.10-2) ... Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libimagequant0:i386 (2.12.2-1.1) ... Setting up libpng16-16:i386 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:i386 (0.6.1-2.1) ... Setting up libltdl7:i386 (2.4.6-15) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up libmd0:i386 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libcxsparse3:i386 (1:5.8.1+dfsg-2) ... Setting up libtiff5:i386 (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up swig4.0 (4.0.2-1) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1k-1) ... Setting up libwebpmux3:i386 (0.6.1-2.1) ... Setting up libbsd0:i386 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libsuitesparseconfig5:i386 (1:5.8.1+dfsg-2) ... Setting up libblas-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up librbio2:i386 (1:5.8.1+dfsg-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up swig (4.0.2-1) ... Setting up libgmp-dev:i386 (2:6.2.1+dfsg-1) ... Setting up mime-support (3.66) ... Setting up libcolamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:i386 (0.6.1-2.1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libsliplu1:i386 (1:5.8.1+dfsg-2) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libcamd2:i386 (1:5.8.1+dfsg-2) ... Setting up libmongoose2:i386 (1:5.8.1+dfsg-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:i386 (2.10.4+dfsg-1) ... Setting up libglpk40:i386 (5.0-1) ... Setting up libsbml5 (5.19.0+dfsg-1) ... Setting up liblapack-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libklu1:i386 (1:5.8.1+dfsg-2) ... Setting up libccolamd2:i386 (1:5.8.1+dfsg-2) ... Setting up python-pip-whl (20.3.4-4) ... Setting up libcholmod3:i386 (1:5.8.1+dfsg-2) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:i386 (1:5.8.1+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up libumfpack5:i386 (1:5.8.1+dfsg-2) ... Setting up python3.9 (3.9.2-1) ... Setting up libsuitesparse-dev:i386 (1:5.8.1+dfsg-2) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-sbml5 (5.19.0+dfsg-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-simplejson (3.17.2-1) ... Setting up python3-pil:i386 (8.1.2+dfsg-0.3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up libglpk-dev:i386 (5.0-1) ... Setting up python3-pydantic (1.7.4-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-h11 (0.12.0-1) ... Setting up python3-typing-extensions (3.7.4.3-1) ... Setting up python3-cpuinfo (5.0.0-2) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-pyrsistent:i386 (0.15.5-1+b3) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-mpmath (1.2.1-1) ... Setting up python3-diskcache (5.2.1-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-swiglpk (4.65.1-1) ... Setting up python3-commonmark (0.9.1-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-sniffio (1.1.0-1) ... Setting up python3-sympy (1.7.1-3) ... Setting up python3-attr (20.3.0-1) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-ruamel.yaml.clib:i386 (0.2.2-1+b2) ... Setting up python3-tabulate (0.8.7-0.1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-rfc3986 (1.4.0-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-depinfo (1.6.0-1) ... Setting up python3-pip (20.3.4-4) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-ruamel.yaml (0.16.12-2) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-pipdeptree (2.0.0-1) ... Setting up python3-optlang (1.4.4-2) ... /usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": /usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": /usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": Setting up python3-httpcore (0.12.3-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-rich (9.11.0-1) ... Setting up python3-pandas-lib:i386 (1.1.5+dfsg-2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-httpx (0.16.1-1) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-pytest-benchmark (3.2.2-2) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-cobra-0.21.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.21.0-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.21.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-cobra-0.21.0' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/python-cobra-0.21.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra copying src/cobra/exceptions.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra copying src/cobra/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/test_medium.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/conftest.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/test_manipulation.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/schema_v1.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/JSON_with_inf_bounds.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.mat -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/fbc_ex2.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/annotation.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid0.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/fbc_ex1.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.yml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/raven.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.media -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_solution.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid_annotation_format.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/iJO1366.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/iJO1366.xml.gz -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/e_coli_core.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/valid_annotation_output.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/raven.mat -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid1.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.genes -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/valid_annotation_format.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/update_pickles.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc1.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/example_notes.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_fva.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_cobra.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook.xml.gz -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/validation.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid2.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build; python3.9 -m pytest ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/python-cobra-0.21.0, configfile: tox.ini plugins: benchmark-3.2.2 collected 28 items cobra/test/test_manipulation.py ........... [ 39%] cobra/test/test_medium.py ................. [100%] =============================== warnings summary =============================== cobra/core/dictlist.py:215 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="? if current_length is 0: cobra/core/gene.py:247 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:247: DeprecationWarning: invalid escape sequence \( the_gene_re = re.compile("(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(self.id)) cobra/core/gene.py:267 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:267: DeprecationWarning: invalid escape sequence \( "(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(other_gene.id) cobra/core/reaction.py:43 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py:43: DeprecationWarning: invalid escape sequence \s compartment_finder = re.compile("^\s*(\[[A-Za-z]\])\s*:*") cobra/flux_analysis/gapfilling.py:13 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py:13: DeprecationWarning: invalid escape sequence \s """Class for performing gap filling. .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_escape_ids /usr/lib/python3/dist-packages/optlang/interface.py:1358: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working if isinstance(stuff, collections.Iterable): .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py:544: DeprecationWarning: add_reaction deprecated. Use add_reactions instead warn("add_reaction deprecated. Use add_reactions instead", DeprecationWarning) .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py:298: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn( .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py: 175 warnings /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py:104: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. medium = pd.Series() .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestErrorsAndExceptions::test_no_names_or_boundary_reactions /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py:49: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. matches = pd.Series( -- Docs: https://docs.pytest.org/en/stable/warnings.html Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/2) Computing stats ... group 1/1: min (2/2) Computing stats ... group 1/1: min (1/2) Computing stats ... group 1/1: min (2/2) Computing stats ... group 1/1: max Computing stats ... group 1/1: max (1/2) Computing stats ... group 1/1: max (2/2) Computing stats ... group 1/1: max (1/2) Computing stats ... group 1/1: max (2/2) Computing stats ... group 1/1: mean Computing stats ... group 1/1: mean (1/2) Computing stats ... group 1/1: mean (2/2) Computing stats ... group 1/1: mean (1/2) Computing stats ... group 1/1: mean (2/2) Computing stats ... group 1/1: median Computing stats ... group 1/1: median (1/2) Computing stats ... group 1/1: median (2/2) Computing stats ... group 1/1: median (1/2) Computing stats ... group 1/1: median (2/2) Computing stats ... group 1/1: iqr Computing stats ... group 1/1: iqr (1/2) Computing stats ... group 1/1: iqr (2/2) Computing stats ... group 1/1: iqr (1/2) Computing stats ... group 1/1: iqr (2/2) Computing stats ... group 1/1: stddev Computing stats ... group 1/1: stddev (1/2) Computing stats ... group 1/1: stddev (2/2) Computing stats ... group 1/1: stddev (1/2) Computing stats ... group 1/1: stddev (2/2) Computing stats ... group 1/1: ops Computing stats ... group 1/1: ops (1/2) Computing stats ... group 1/1: ops (2/2) Computing stats ... group 1/1: ops (1/2) Computing stats ... group 1/1: ops (2/2) Computing stats ... group 1/1: ops: outliers Computing stats ... group 1/1: ops: outliers (1/2) Computing stats ... group 1/1: ops: outliers (2/2) Computing stats ... group 1/1: ops: rounds Computing stats ... group 1/1: ops: rounds (1/2) Computing stats ... group 1/1: ops: rounds (2/2) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/2) Computing stats ... group 1/1: ops: iterations (2/2) -------------------------------------------------------------------------------------- benchmark: 2 tests -------------------------------------------------------------------------------------- Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ test_benchmark_medium_mip 11.1454 (1.0) 12.1459 (1.0) 11.6473 (1.0) 0.1838 (1.0) 11.6702 (1.0) 0.2120 (1.0) 22;5 85.8566 (1.0) 84 1 test_benchmark_medium_linear 11.4748 (1.03) 12.4544 (1.03) 11.9967 (1.03) 0.2356 (1.28) 12.0451 (1.03) 0.3387 (1.60) 22;0 83.3564 (0.97) 76 1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ======================= 28 passed, 193 warnings in 6.46s ======================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-cobra-0.21.0/debian/python3-cobra running install running build running build_py running install_lib creating /build/python-cobra-0.21.0/debian/python3-cobra creating /build/python-cobra-0.21.0/debian/python3-cobra/usr creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9 creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/.benchmarks creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/dict.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/schema_v1.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/load.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/load.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/sbml.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/dict.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/mat.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/sbml.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/yaml.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/json.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/mat.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/json.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/yaml.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/reaction_summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/model_summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/model_summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/util.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/context.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/util.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/context.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/solver.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/array.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/solver.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/array.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/configuration.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/group.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/metabolite.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/singleton.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/species.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/formula.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/object.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/singleton.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/model.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/metabolite.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/solution.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/configuration.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/formula.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/group.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/species.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/gene.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/dictlist.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/reaction.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/solution.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/object.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/achr.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/sampling.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/optgp.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/sampling.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/achr.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/optgp.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/variability.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/room.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/moma.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/conftest.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/JSON_with_inf_bounds.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.mat -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex2.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/annotation.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid0.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex1.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.yml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.media -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_solution.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid_annotation_format.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.xml.gz -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/e_coli_core.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_output.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.mat -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid1.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.genes -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_format.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/update_pickles.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc1.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/example_notes.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_fva.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_cobra.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook.xml.gz -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/validation.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid2.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/test_medium.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/conftest.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/exceptions.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/delete.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/annotate.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/validate.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/delete.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/modify.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/modify.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/validate.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/annotations.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/annotations.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/exceptions.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/dict.py to dict.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/load.py to load.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/sbml.py to sbml.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/mat.py to mat.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/json.py to json.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/yaml.py to yaml.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/summary.py to summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/util.py to util.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/context.py to context.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/solver.py to solver.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/array.py to array.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/model.py to model.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/configuration.py to configuration.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/group.py to group.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/metabolite.py to metabolite.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/singleton.py to singleton.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/reaction.py to reaction.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/species.py to species.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/formula.py to formula.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/dictlist.py to dictlist.cpython-39.pyc /usr/lib/python3.9/dist-packages/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/gene.py to gene.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/solution.py to solution.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/object.py to object.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/sampling.py to sampling.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/achr.py to achr.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/optgp.py to optgp.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/room.py to room.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_medium.py to test_medium.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/conftest.py to conftest.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/exceptions.py to exceptions.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/delete.py to delete.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/modify.py to modify.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/validate.py to validate.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/annotations.py to annotations.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-39.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra-0.21.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-cobra-0.21.0' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/python-cobra-0.21.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:229: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.21.0-1_all.deb'. dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.21.0-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-cobra_0.21.0-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/60818 and its subdirectories I: Current time: Tue Oct 11 02:42:01 -12 2022 I: pbuilder-time-stamp: 1665499321 Wed Sep 8 08:19:03 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Wed Sep 8 08:19:03 UTC 2021 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Wed Sep 8 08:21:10 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. Wed Sep 8 08:21:10 UTC 2021 I: python-cobra_0.21.0-1_i386.changes: Format: 1.8 Date: Tue, 09 Feb 2021 08:43:16 +0100 Source: python-cobra Binary: python-cobra-data python3-cobra Architecture: all i386 Version: 0.21.0-1 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Closes: 978032 Changes: python-cobra (0.21.0-1) unstable; urgency=high . * Team upload. * New upstream version Closes: #978032 * Standards-Version: 4.5.1 (routine-update) * No tab in license text (routine-update) * watch file standard 4 (routine-update) * Build-Depends: python3-appdirs, python3-httpx, python3-pydantic, python3-rich * Versioned Build-Depends: python3-swiglpk (>= 4.65.1) Checksums-Sha1: c7947d355f6bd31fb468782354b7e3cb16090bfb 1507268 python-cobra-data_0.21.0-1_all.deb 46ac1f4fcc3d91adc0f523898f9850fc6633a0f6 9270 python-cobra_0.21.0-1_i386.buildinfo 5130efb2bcc8016096cd6c7143652947de6caa28 113612 python3-cobra_0.21.0-1_i386.deb Checksums-Sha256: 93110280a264500dc6370e06b373d0c49df1f401b9fb0e43d1afb2bd9583a3b4 1507268 python-cobra-data_0.21.0-1_all.deb c7a023914ac3cc77687a1b441cb1052586c72f4417a04ee418bda69c6943e019 9270 python-cobra_0.21.0-1_i386.buildinfo 5363a862ae804ff630e2dc20301ac89d25e76b749b34d4f5f6d73256b39f1d39 113612 python3-cobra_0.21.0-1_i386.deb Files: 536705c7985d6d3eadd22eeeb0d9c5f7 1507268 python optional python-cobra-data_0.21.0-1_all.deb 9cd538919484331062083e7b1ab9808f 9270 python optional python-cobra_0.21.0-1_i386.buildinfo 2167009830ad6dbb8fb6216b29db3b3b 113612 python optional python3-cobra_0.21.0-1_i386.deb Wed Sep 8 08:21:18 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.VguQbRY72n/python-cobra_0.21.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.VguQbRY72n/python-cobra_0.21.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.VguQbRY72n/python-cobra_0.21.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.VguQbRY72n/b1/python-cobra_0.21.0-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.VguQbRY72n/b2/python-cobra_0.21.0-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.351s) 0.351s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.046s) 0.046s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Sep 8 08:21:32 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Sep 8 08:21:32 UTC 2021 I: python-cobra from bullseye built successfully and reproducibly on i386. Wed Sep 8 08:21:33 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Sep 8 08:21:33 UTC 2021 I: Submitting 12K b1/python-cobra_0.21.0-1_i386.buildinfo.asc Wed Sep 8 08:21:34 UTC 2021 I: Submitting 12K b2/python-cobra_0.21.0-1_i386.buildinfo.asc Wed Sep 8 08:21:35 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Sep 8 08:21:35 UTC 2021 I: Done submitting .buildinfo files. Wed Sep 8 08:21:35 UTC 2021 I: Removing signed python-cobra_0.21.0-1_i386.buildinfo.asc files: removed './b1/python-cobra_0.21.0-1_i386.buildinfo.asc' removed './b2/python-cobra_0.21.0-1_i386.buildinfo.asc'