Mon Jun 3 00:09:52 UTC 2024 I: starting to build q2-quality-filter/bullseye/i386 on jenkins on '2024-06-03 00:09' Mon Jun 3 00:09:52 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_19/5283/console.log Mon Jun 3 00:09:52 UTC 2024 I: Downloading source for bullseye/q2-quality-filter=2020.11.1-2 --2024-06-03 00:09:52-- http://cdn-fastly.deb.debian.org/debian/pool/main/q/q2-quality-filter/q2-quality-filter_2020.11.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2237 (2.2K) [text/prs.lines.tag] Saving to: ‘q2-quality-filter_2020.11.1-2.dsc’ 0K .. 100% 261M=0s 2024-06-03 00:09:52 (261 MB/s) - ‘q2-quality-filter_2020.11.1-2.dsc’ saved [2237/2237] Mon Jun 3 00:09:52 UTC 2024 I: q2-quality-filter_2020.11.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: q2-quality-filter Binary: q2-quality-filter Architecture: all Version: 2020.11.1-2 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Étienne Mollier Homepage: https://qiime2.org/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/q2-quality-filter Vcs-Git: https://salsa.debian.org/med-team/q2-quality-filter.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-nose, qiime (>= 2019.10.0), q2templates, q2-types Package-List: q2-quality-filter deb science optional arch=all Checksums-Sha1: 1e6f842c7d5baae80ca055dac23d7ce081b84762 256942 q2-quality-filter_2020.11.1.orig.tar.gz 58e132507098ad020dc84a79089f96c3c123f009 5344 q2-quality-filter_2020.11.1-2.debian.tar.xz Checksums-Sha256: b101b6b886239d66732e0d6b41870f25d3959313744afa342a93a48d6226718c 256942 q2-quality-filter_2020.11.1.orig.tar.gz 700d1ebca1e973508541ec1cbc70cfb7b8027a5bebe22aea9db4c8f498ac4ee6 5344 q2-quality-filter_2020.11.1-2.debian.tar.xz Files: cef6e8d026da450128a4abc81cf27261 256942 q2-quality-filter_2020.11.1.orig.tar.gz b38c0468949bd8cb16ef947aed36ba04 5344 q2-quality-filter_2020.11.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmAepqIACgkQeTz2fo8N Edq6pw//T/Gdky2Mst1Ko4Jq+vSlJHxIDo+DBqP82uYpfOkQnTqWJLpGnAWooei1 ps7m3jBXVWqnPNUVxpk2QG6aNOL5ZvES+/vR/viXArx9t3UZmbQVuRR8lDoVGid1 6oGlTc63ZsvpnCL78iV213aLzUoseW1oCVO8LKTQi8EUAkaGsAx4la/dyF90W8+y TYrG6yFPybKvk52v4W2hx0G3UDTMeXkQBC58vOm6GOKlQdibLjk0O7//wr9l2dwV 92fZi9mVy2I1sGyTju8QlvN/wYgyMSd/Yjq72ZNrMM1DQ2cND/Xhnsm62FuGxvz4 lsUKabji0Atxwli6hTBc1GWBLLoMrv0+8Ks4M+xUCIR0hqgpj7mLvUjrr4g6PsJp GzeMITex0xr0heOmT/t2o6tl0DiypiO3PT3Cdl2MNPkWwgsP4ckxDUMuFl7bOTK4 iG8j9rybeBj7ldSaSGO9BR3Ic594UQKRkxSRo1n8QSZh67A8yeYOTIf3GFqfbl6Q BfKQX4WlEN5Gm36OR1HUelULObWHWdhney+td+hE7jhkw3S5kSgehYO/4KjvrRRB HEJDXxIEQEb9hlY+JLNLqEQ7z2MDFi8hE243sEXGZaKHehsHOrzUMUf4k36OSt9g FOSL1BMT3JQEPvUbgEI46b44XnhoVNJvfiYVuv3Dy0BPAXZaYsQ= =Mt/R -----END PGP SIGNATURE----- Mon Jun 3 00:09:52 UTC 2024 I: Checking whether the package is not for us Mon Jun 3 00:09:52 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Mon Jun 3 00:09:52 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Mon Jun 3 00:10:13 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 2 12:09:55 -12 2024 I: pbuilder-time-stamp: 1717373395 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [q2-quality-filter_2020.11.1-2.dsc] I: copying [./q2-quality-filter_2020.11.1.orig.tar.gz] I: copying [./q2-quality-filter_2020.11.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.M76B4RTa/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 6 02:24:34 2021 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./q2-quality-filter_2020.11.1-2.dsc dpkg-source: info: extracting q2-quality-filter in q2-quality-filter-2020.11.1 dpkg-source: info: unpacking q2-quality-filter_2020.11.1.orig.tar.gz dpkg-source: info: unpacking q2-quality-filter_2020.11.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17460/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=6 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6f3a34ef696d4072ac4aad6992dc208f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17460' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HlTTynUS/pbuilderrc_sw52 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HlTTynUS/b1 --logfile b1/build.log q2-quality-filter_2020.11.1-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin total 5772 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jan 20 2022 more -rwsr-xr-x 1 root root 50720 Jan 20 2022 mount -rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 May 17 02:59 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 598488 Jan 19 21:59 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jan 20 2022 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/17460/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-nose, qiime (>= 2019.10.0), q2templates, q2-types dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19731 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2019.10.0); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on q2templates; however: Package q2templates is not installed. pbuilder-satisfydepends-dummy depends on q2-types; however: Package q2-types is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-bootstrap{a} libjs-jquery{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} node-normalize.css{a} po-debconf{a} python3{a} python3-bibtexparser{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-future{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-networkx{a} python3-nose{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pyparsing{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3-tzlocal{a} python3-yaml{a} python3.9{a} python3.9-minimal{a} q2templates{a} qiime{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pydot python3-pygraphviz python3-scipy python3-tables python3-xlwt q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2cli wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 39.4 MB of archives. After unpacking 170 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: q2-types but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-bootstrap{a} libjs-jquery{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} node-normalize.css{a} po-debconf{a} python3{a} python3-bibtexparser{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-future{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-networkx{a} python3-nose{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pyparsing{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3-tzlocal{a} python3-yaml{a} python3.9{a} python3.9-minimal{a} q2templates{a} qiime{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pydot python3-pygraphviz python3-scipy python3-tables python3-xlwt q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2cli wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 39.4 MB of archives. After unpacking 170 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17460 and its subdirectories Mon Jun 3 00:10:14 UTC 2024 W: No second build log, what happened? Mon Jun 3 00:10:14 UTC 2024 W: Downloading the build dependencies failed Mon Jun 3 00:10:14 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Jun 3 00:10:14 UTC 2024 W: Network problems are automatically rescheduled after some hours.