Fri Jun 25 15:33:28 UTC 2021 I: starting to build tracetuner/bullseye/i386 on jenkins on '2021-06-25 15:33' Fri Jun 25 15:33:28 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/12440/console.log Fri Jun 25 15:33:28 UTC 2021 I: Downloading source for bullseye/tracetuner=3.0.6~beta+dfsg-3 --2021-06-25 15:33:28-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/tracetuner/tracetuner_3.0.6~beta+dfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2054 (2.0K) Saving to: ‘tracetuner_3.0.6~beta+dfsg-3.dsc’ 0K .. 100% 95.6M=0s 2021-06-25 15:33:28 (95.6 MB/s) - ‘tracetuner_3.0.6~beta+dfsg-3.dsc’ saved [2054/2054] Fri Jun 25 15:33:28 UTC 2021 I: tracetuner_3.0.6~beta+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tracetuner Binary: tracetuner Architecture: any Version: 3.0.6~beta+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://sourceforge.net/projects/tracetuner/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/tracetuner Vcs-Git: https://salsa.debian.org/med-team/tracetuner.git Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: tracetuner deb science optional arch=any Checksums-Sha1: b906dd41bad02c457fe780100f1338b8d549497a 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz 7d39c02ac0576b6aeb23f5b9dd3648039e973070 7920 tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz Checksums-Sha256: 24190cef98d7f6faaac35306c496d8fe16d72991da89d25cc589dcd5619938e0 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz 917cdcb50d7b260af00c7500741db275e4a26428ae8a48acf2e228d6c6f131a2 7920 tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz Files: 1662eaa5444391d0e824ee565ee3fa29 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz f2f51592513f7b51710b12bf3f9bd33e 7920 tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/KvegRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFfiQ//c/PDsFOmIqhHrhWNd1h5QI26kVh9RgtA xJlrSg6qJv81VSlZC6LjqjL/Rz09Fcw1hZ+1kP3A+dK6gMjnPEXtB0e9gCT+5rBF aomlL5ElsWJVk1zf6ik+Rs0Fsf5qzLKGSdhMr4QJYqMJ9gc5a1DOBMguJHhPZPWe /gqjUuE/cF4tJfuhzQUU/yU40UXK6UZu91v2uI/J26Esjqtm1ACHR+YVYFaHT5/9 bYRBfanbl+0rVjRrL8o1rmsVojh7DM0c5n9UuElqcn/ZnyxK/esQsDnlJ3H8mIc9 4ujM61iX4jPBH28ZywoQhs0wBCHFJPCyQLqo9GZkKsM4AKDAKhv5uR+M8rqjfwk8 +LLFPxuj8ukRRmVSOIXXmjw0WXTHB/ESI9QlN1EE4u1Ua/q1C2L/fEZz6MlRvVwL PRVZNhXsMsd/L6a1r7iAvGt4YVJ5jg/Rhr+gsnzrbHPyzTa3duVoTrZXyph8k+YK ipOj8HxEqaY+XUADGhyPkU7bg3zz1ZuRiRi9ucWW5X47Vs3jYp1EkDDCiiSubSZ+ SEr99ovDWDAFnJvDc5B38gUmKZA2pkvBILccxsyVOCACzQVnu5AzSgvYzlKTi+Ox n4sCMf1ykRYy/hv3pHbcrDOxNUxlEQxrQ1pHbSrkVUKhQ/X8i8GcvHUvWjfPMues CWtBrd/wubQ= =Na18 -----END PGP SIGNATURE----- Fri Jun 25 15:33:28 UTC 2021 I: Checking whether the package is not for us Fri Jun 25 15:33:28 UTC 2021 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Jun 25 15:33:28 UTC 2021 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Jun 25 15:34:04 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 28 09:56:30 -12 2022 I: pbuilder-time-stamp: 1659045390 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tracetuner_3.0.6~beta+dfsg-3.dsc] I: copying [./tracetuner_3.0.6~beta+dfsg.orig.tar.xz] I: copying [./tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.K2EfKzE5/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 4 10:53:28 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tracetuner_3.0.6~beta+dfsg-3.dsc dpkg-source: info: extracting tracetuner in tracetuner-3.0.6~beta+dfsg dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg.orig.tar.xz dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_format_security.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/54587/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='cdc86351ce7240f4a7aec72709a364af' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='54587' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.xgsNMQchnN/pbuilderrc_ygnZ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.xgsNMQchnN/b1 --logfile b1/build.log tracetuner_3.0.6~beta+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-1 (2021-06-10) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Jun 21 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 28 03:48 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/54587/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.8 MB of archives. After unpacking 68.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Fetched 18.8 MB in 0s (72.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../10-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../25-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/tracetuner-3.0.6~beta+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package tracetuner dpkg-buildpackage: info: source version 3.0.6~beta+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedirectory=src --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg' dh_auto_clean install -d /build/tracetuner-3.0.6\~beta\+dfsg/debian/.debhelper/generated/_source/home cd src && make -j1 clean make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src' cd compute_qv; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' cd mktrain; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' cd mklut; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' cd mkchk; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src' rm -rf lib obj rel make[1]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg' dh_autoreconf_clean -O--sourcedirectory=src -O--no-parallel dh_clean -O--sourcedirectory=src -O--no-parallel rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/tracetuner.substvars debian/files rm -fr -- debian/tracetuner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --sourcedirectory=src --no-parallel dh_update_autotools_config -O--sourcedirectory=src -O--no-parallel dh_autoreconf -O--sourcedirectory=src -O--no-parallel dh_auto_configure -O--sourcedirectory=src -O--no-parallel install -d /build/tracetuner-3.0.6\~beta\+dfsg/debian/.debhelper/generated/_source/home dh_auto_build -O--sourcedirectory=src -O--no-parallel cd src && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src' for dir in compute_qv mktrain mklut mkchk ; \ do (cd $dir; make EXTRACFLAGS="-g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic" LDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" all); \ done make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o ../../obj/Linux_64/main.o In file included from /usr/include/string.h:495, from main.c:27: In function 'strncpy', inlined from 'main' at main.c:1397:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1400:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 256 bytes from a string of length 999 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1421:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1376:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1386:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1485:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1391:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1692:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1676:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1663:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1644:21: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1636:21: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1587:21: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1580:21: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1572:21: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1546:21: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1450:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1376:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at main.c:1346:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_match_data.c -o ../../obj/Linux_64/Btk_match_data.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_compute_match.c -o ../../obj/Linux_64/Btk_compute_match.o ../mktrain/Btk_compute_match.c: In function 'find_best_region': ../mktrain/Btk_compute_match.c:658:13: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 658 | else | ^~~~ ../mktrain/Btk_compute_match.c:660:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 660 | max=i; | ^~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_sw.c -o ../../obj/Linux_64/Btk_sw.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_indels.c -o ../../obj/Linux_64/Btk_process_indels.o Btk_process_indels.c: In function 'get_autocorrelation_indel_size': Btk_process_indels.c:644:42: warning: variable 'max_height' set but not used [-Wunused-but-set-variable] 644 | float *ans[NUM_COLORS], height = 0., max_height = 0.; | ^~~~~~~~~~ Btk_process_indels.c:642:25: warning: variable 'best_color' set but not used [-Wunused-but-set-variable] 642 | int i, j, color, best_color, n=1; | ^~~~~~~~~~ In file included from /usr/include/string.h:495, from Btk_process_indels.c:33: In function 'strncpy', inlined from 'Btk_process_indels' at Btk_process_indels.c:2471:9: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Btk_process_indels.c: In function 'Btk_process_indels': Btk_process_indels.c:2470:22: note: length computed here 2470 | prefix_len = strlen(options.file_name) - strlen(suffix); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_atod.c -o ../../obj/Linux_64/Btk_atod.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_qv.c -o ../../obj/Linux_64/Btk_compute_qv.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_call_bases.c -o ../../obj/Linux_64/Btk_call_bases.o Btk_call_bases.c: In function 'get_best_peak_color_and_index_by_base_and_location': Btk_call_bases.c:2988:28: warning: variable 'new_location' set but not used [-Wunused-but-set-variable] 2988 | int new_peak_index, new_location = location; | ^~~~~~~~~~~~ Btk_call_bases.c: In function 'call_peak_by_location_color_and_index': Btk_call_bases.c:3199:41: warning: variable 'r' set but not used [-Wunused-but-set-variable] 3199 | int i = base_ind, jc = color, j, l, r, k; | ^ Btk_call_bases.c: In function 'mark_called_peaks': Btk_call_bases.c:3547:28: warning: variable 'cd_length' set but not used [-Wunused-but-set-variable] 3547 | int Case, cd_index, cd_length; | ^~~~~~~~~ Btk_call_bases.c:3547:18: warning: variable 'cd_index' set but not used [-Wunused-but-set-variable] 3547 | int Case, cd_index, cd_length; | ^~~~~~~~ Btk_call_bases.c: In function 'Btk_call_bases': Btk_call_bases.c:3697:32: warning: variable 'cweight' set but not used [-Wunused-but-set-variable] 3697 | double height2, nweight, cweight; | ^~~~~~~ Btk_call_bases.c:3697:23: warning: variable 'nweight' set but not used [-Wunused-but-set-variable] 3697 | double height2, nweight, cweight; | ^~~~~~~ Btk_call_bases.c:3691:14: warning: variable 'debug' set but not used [-Wunused-but-set-variable] 3691 | char *debug, base, *context=NULL; | ^~~~~ At top level: Btk_call_bases.c:117:21: warning: 'gSpacEst0' defined but not used [-Wunused-const-variable=] 117 | static const double gSpacEst0 = 12.0; | ^~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_raw_data.c -o ../../obj/Linux_64/Btk_process_raw_data.o Btk_process_raw_data.c: In function 'estimate_spacing_variation_of_shifted_peaks': Btk_process_raw_data.c:1142:26: warning: variable 'cd1' set but not used [-Wunused-but-set-variable] 1142 | ColorData *cd0, *cd1; | ^~~ Btk_process_raw_data.c:1142:20: warning: variable 'cd0' set but not used [-Wunused-but-set-variable] 1142 | ColorData *cd0, *cd1; | ^~~ Btk_process_raw_data.c: In function 'make_DP_mobility_shifts': Btk_process_raw_data.c:2299:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2299 | if (DEBUG_CURTIS && options->Verbose > 2 ) | ^~ Btk_process_raw_data.c:2300:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2300 | putc('o', stderr); fflush(stderr); | ^~~~~~ Btk_process_raw_data.c:2650:10: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 2650 | for ( color=0; color < NUM_COLORS; color++ ) | ^~~ Btk_process_raw_data.c:2652:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 2652 | fprintf(fp, " %8.3g\n", shift_err[i]); | ^~~~~~~ Btk_process_raw_data.c: In function 'normalize_signals': Btk_process_raw_data.c:2956:40: warning: ordered comparison of pointer with integer zero [-Wpedantic] 2956 | norm_factor[i] = (num_peaks>0) ? ave_int[i][m] : -1; | ^ Btk_process_raw_data.c: In function 'make_multicomponent_iteration': Btk_process_raw_data.c:3305:21: warning: variable 'best_pos' set but not used [-Wunused-but-set-variable] 3305 | int best_pos; | ^~~~~~~~ Btk_process_raw_data.c:3247:15: warning: variable 'det4' set but not used [-Wunused-but-set-variable] 3247 | float det4; | ^~~~ Btk_process_raw_data.c: In function 'make_DP_mobility_shifts.isra': Btk_process_raw_data.c:2567:17: warning: array subscript -1 is outside array bounds of 'float[6]' [-Warray-bounds] 2567 | fpoly(peaks[i]->ipos+shift_flag[color], powers-1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2568 | POLYFIT_DEGREE+1); | ~~~~~~~~~~~~~~~~~ Btk_process_raw_data.c:1992:19: note: while referencing 'powers' 1992 | float powers[POLYFIT_DEGREE+1]; | ^~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o ../../obj/Linux_64/util.o util.c: In function 'mobShiftQuality': util.c:980:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] 980 | int count[MAX_CHUNKS]; | ^~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c nr.c -o ../../obj/Linux_64/nr.o nr.c: In function 'gaussj': nr.c:487:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 487 | if (ipiv[j] != 1) | ^~ nr.c:497:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 497 | ++(ipiv[icol]); | ^~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_peaks.c -o ../../obj/Linux_64/Btk_process_peaks.o Btk_process_peaks.c: In function 'colordata_detect_peaks': Btk_process_peaks.c:524:45: warning: variable 'relative_width' set but not used [-Wunused-but-set-variable] 524 | sum_peak_width, average10_width, relative_width; | ^~~~~~~~~~~~~~ Btk_process_peaks.c: In function 'add_one_peak': Btk_process_peaks.c:2307:35: warning: variable 'p2' set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~ Btk_process_peaks.c:2307:17: warning: variable 'peak1' set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~~~~ Btk_process_peaks.c:2307:10: warning: variable 'peak0' set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~~~~ Btk_process_peaks.c: In function 'fit_single_peak': Btk_process_peaks.c:2651:45: warning: variable 'x2' set but not used [-Wunused-but-set-variable] 2651 | double sum_exp = 0., sum_exp2 = 0., x2, B; | ^~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_io.c -o ../../obj/Linux_64/Btk_qv_io.o Btk_qv_io.c: In function 'Btk_read_sample_file': Btk_qv_io.c:770:46: warning: ordered comparison of pointer with integer zero [-Wpedantic] 770 | if ((options.inp_phd == 0) && (num_bases > 0)) { | ^ Btk_qv_io.c:649:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 649 | fread(magic, 1, 2, fp); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from Btk_qv_io.c:29: In function 'strncpy', inlined from 'output_scf_file' at Btk_qv_io.c:2636:5: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tp.c -o ../../obj/Linux_64/Btk_compute_tp.o Btk_compute_tp.c: In function 'get_peak_height_ratio': Btk_compute_tp.c:340:58: warning: variable 'bad_ipos' set but not used [-Wunused-but-set-variable] 340 | double max_uncalled_ipos = -1, min_called_ipos = -1, bad_ipos; | ^~~~~~~~ Btk_compute_tp.c: In function 'get_peak_spacing_ratio': Btk_compute_tp.c:394:17: warning: variable 'bad_ipos' set but not used [-Wunused-but-set-variable] 394 | double psr, bad_ipos, ipos; | ^~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tpars.c -o ../../obj/Linux_64/Btk_compute_tpars.o Btk_compute_tpars.c: In function 'data_create': Btk_compute_tpars.c:215:33: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] 215 | (void)memset(data, 0, sizeof(data)); | ^ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_get_mixed_bases.c -o ../../obj/Linux_64/Btk_get_mixed_bases.o Btk_get_mixed_bases.c: In function 'mixed_base': Btk_get_mixed_bases.c:142:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 142 | else if (((b1 == 'G') && (b2 == 'T')) || ((b1 == 'T') && (b2 == 'G'))) | ^~ Btk_get_mixed_bases.c:145:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 145 | return 'N'; | ^~~~~~ Btk_get_mixed_bases.c: In function 'find_alternative_peaks': Btk_get_mixed_bases.c:473:34: warning: ordered comparison of pointer with integer zero [-Wpedantic] 473 | if ((num_peaks_found > 0) && | ^ Btk_get_mixed_bases.c: In function 'call_mixed_bases': Btk_get_mixed_bases.c:744:55: warning: variable 'cweight' set but not used [-Wunused-but-set-variable] 744 | double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; | ^~~~~~~ Btk_get_mixed_bases.c:744:43: warning: variable 'nweight' set but not used [-Wunused-but-set-variable] 744 | double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; | ^~~~~~~ Btk_get_mixed_bases.c:740:24: warning: variable 'pos' set but not used [-Wunused-but-set-variable] 740 | int i, j, k, n, pos, jbest, kbest, curr_num2, prev_right_bound=0; | ^~~ Btk_get_mixed_bases.c:739:25: warning: variable 'context' set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~~~~ Btk_get_mixed_bases.c:739:18: warning: variable 'base2' set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~~ Btk_get_mixed_bases.c:739:12: warning: variable 'base' set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~ Btk_get_mixed_bases.c: In function 'Btk_get_mixed_bases': Btk_get_mixed_bases.c:1365:31: warning: variable 'res' set but not used [-Wunused-but-set-variable] 1365 | double ratio, wratio, res, w1, w2; | ^~~ Btk_get_mixed_bases.c:1365:23: warning: variable 'wratio' set but not used [-Wunused-but-set-variable] 1365 | double ratio, wratio, res, w1, w2; | ^~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_lookup_table.c -o ../../obj/Linux_64/Btk_lookup_table.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_funs.c -o ../../obj/Linux_64/Btk_qv_funs.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ABI_Toolkit.c -o ../../obj/Linux_64/ABI_Toolkit.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_default_table.c -o ../../obj/Linux_64/Btk_default_table.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c FileHandler.c -o ../../obj/Linux_64/FileHandler.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c SCF_Toolkit.c -o ../../obj/Linux_64/SCF_Toolkit.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c context_table.c -o ../../obj/Linux_64/context_table.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c tracepoly.c -o ../../obj/Linux_64/tracepoly.o tracepoly.c: In function 'gaussj': tracepoly.c:631:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 631 | if (ipiv[j] != 1) | ^~ tracepoly.c:641:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 641 | ++(ipiv[icol]); | ^~ tracepoly.c: In function 'func_legendre_1based': tracepoly.c:137:9: warning: array subscript -1 is outside array bounds of 'double[3]' [-Warray-bounds] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:132:27: note: while referencing 'ptemp0' 132 | double *pl0 = pl1+1, ptemp0[2*NumCoef-1]; | ^~~~~~ tracepoly.c: In function 'traceGetCoef.constprop': tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of 'double[8000]' [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:12: note: while referencing 'xxxx' 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of 'double[8000]' [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:33: note: while referencing 'yyyy' 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of 'double[8000]' [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:54: note: while referencing 'sigma' 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of 'double[8000]' [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:12: note: while referencing 'xxxx' 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of 'double[8000]' [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:33: note: while referencing 'yyyy' 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of 'double[8000]' [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:54: note: while referencing 'sigma' 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~~ tracepoly.c: In function 'traceEvalPoly': tracepoly.c:137:9: warning: array subscript -1 is outside array bounds of 'double[3]' [-Warray-bounds] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:132:27: note: while referencing 'ptemp0' 132 | double *pl0 = pl1+1, ptemp0[2*NumCoef-1]; | ^~~~~~ /usr/bin/ar rc ../../lib/Linux_64/libtt.a ../../obj/Linux_64/Btk_match_data.o ../../obj/Linux_64/Btk_compute_match.o ../../obj/Linux_64/Btk_sw.o ../../obj/Linux_64/Btk_process_indels.o ../../obj/Linux_64/Btk_atod.o ../../obj/Linux_64/Btk_compute_qv.o ../../obj/Linux_64/Btk_call_bases.o ../../obj/Linux_64/Btk_process_raw_data.o ../../obj/Linux_64/util.o ../../obj/Linux_64/nr.o ../../obj/Linux_64/Btk_process_peaks.o ../../obj/Linux_64/Btk_qv_io.o ../../obj/Linux_64/Btk_compute_tp.o ../../obj/Linux_64/Btk_compute_tpars.o ../../obj/Linux_64/Btk_get_mixed_bases.o ../../obj/Linux_64/Btk_lookup_table.o ../../obj/Linux_64/Btk_qv_funs.o ../../obj/Linux_64/ABI_Toolkit.o ../../obj/Linux_64/Btk_default_table.o ../../obj/Linux_64/FileHandler.o ../../obj/Linux_64/SCF_Toolkit.o ../../obj/Linux_64/context_table.o ../../obj/Linux_64/tracepoly.o /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux_64/main.o ../../lib/Linux_64/libtt.a -lm -o ../../rel/Linux_64/ttuner -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c train.c -o ../../obj/Linux_64/train.o In file included from /usr/include/string.h:495, from train.c:35: In function 'strncpy', inlined from 'main' at train.c:1431:26: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at train.c:1400:23: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at train.c:1357:27: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at train.c:1511:23: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at train.c:1501:23: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at train.c:1437:23: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at train.c:1297:23: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c train_data.c -o ../../obj/Linux_64/train_data.o train_data.c: In function 'append_to_train_data': train_data.c:217:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 217 | if (Verbose > 0) | ^~ train_data.c:220:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 220 | fprintf(fout, "# Clear range start :%4d end:%4d\n", | ^~~~~~~ /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux_64/train.o ../../obj/Linux_64/train_data.o ../../obj/Linux_64/Btk_compute_match.o ../../obj/Linux_64/Btk_match_data.o ../../obj/Linux_64/Btk_sw.o ../../lib/Linux_64/libtt.a -lm -o ../../rel/Linux_64/train -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c trainphd.c -o ../../obj/Linux_64/trainphd.o trainphd.c: In function 'process_projectfile': trainphd.c:653:13: warning: variable 'buffer2' set but not used [-Wunused-but-set-variable] 653 | char buffer2[BUFLEN]; | ^~~~~~~ trainphd.c: In function 'main': trainphd.c:931:35: error: format not a string literal and no format arguments [-Werror=format-security] 931 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:940:35: error: format not a string literal and no format arguments [-Werror=format-security] 940 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:959:39: error: format not a string literal and no format arguments [-Werror=format-security] 959 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:967:39: error: format not a string literal and no format arguments [-Werror=format-security] 967 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1011:33: error: format not a string literal and no format arguments [-Werror=format-security] 1011 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1018:33: error: format not a string literal and no format arguments [-Werror=format-security] 1018 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1084:33: error: format not a string literal and no format arguments [-Werror=format-security] 1084 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1091:33: error: format not a string literal and no format arguments [-Werror=format-security] 1091 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1123:35: error: format not a string literal and no format arguments [-Werror=format-security] 1123 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1128:35: error: format not a string literal and no format arguments [-Werror=format-security] 1128 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1134:33: error: format not a string literal and no format arguments [-Werror=format-security] 1134 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1139:33: error: format not a string literal and no format arguments [-Werror=format-security] 1139 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function 'strncpy', inlined from 'process_dir' at trainphd.c:608:17, inlined from 'main' at trainphd.c:1095:17: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trainphd.c: In function 'main': trainphd.c:608:40: note: length computed here 608 | strncpy(path2, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function 'strncpy', inlined from 'process_projectfile' at trainphd.c:735:17, inlined from 'main' at trainphd.c:1105:13: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trainphd.c: In function 'main': trainphd.c:735:46: note: length computed here 735 | strncpy(tabFileName, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function 'strncpy', inlined from 'main' at trainphd.c:1041:25: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trainphd.c: In function 'main': trainphd.c:1041:56: note: length computed here 1041 | strncpy(tab_file_name, string, strlen(string)-strlen(name)); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function 'strncpy', inlined from 'main' at trainphd.c:896:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at trainphd.c:856:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at trainphd.c:864:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at trainphd.c:860:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at trainphd.c:818:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at trainphd.c:822:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at trainphd.c:814:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at trainphd.c:849:19: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: some warnings being treated as errors make[2]: *** [../include.mk:180: ../../obj/Linux_64/trainphd.o] Error 1 make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c lut.c -o ../../obj/Linux_64/lut.o lut.c: In function 'read_bases_and_populate_bins': lut.c:438:26: warning: variable 'cchar' set but not used [-Wunused-but-set-variable] 438 | char schar, cchar; /* Sample and consensus characters. */ | ^~~~~ lut.c:437:25: warning: variable 'cpos' set but not used [-Wunused-but-set-variable] 437 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c:437:19: warning: variable 'spos' set but not used [-Wunused-but-set-variable] 437 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c: In function 'create_qv_table_via_dynamic_programming': lut.c:894:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 894 | for (i = 1; i < (MAX_QV / 10); i++) | ^~~ lut.c:899:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 899 | fprintf(fout, "\n"); | ^~~~~~~ lut.c: In function 'compress_params_array': lut.c:1012:13: warning: variable 'max_weight' set but not used [-Wunused-but-set-variable] 1012 | int max_weight=0, *wn; | ^~~~~~~~~~ lut.c: In function 'read_and_sort_trace_parameters': lut.c:1112:21: warning: variable 'cchar' set but not used [-Wunused-but-set-variable] 1112 | char schar, cchar; /* Sample and consensus characters. */ | ^~~~~ lut.c:1111:20: warning: variable 'cpos' set but not used [-Wunused-but-set-variable] 1111 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c:1111:14: warning: variable 'spos' set but not used [-Wunused-but-set-variable] 1111 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c: In function 'main': lut.c:1404:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] 1404 | t1 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1449:34: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] 1449 | sscanf(optarg, "%d", &threshold_count); | ~^ ~~~~~~~~~~~~~~~~ | | | | | unsigned int * | int * | %d lut.c:1520:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] 1520 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1573:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] 1573 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1604:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] 1604 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1645:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] 1645 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ In file included from /usr/include/string.h:495, from lut.c:46: In function 'strncpy', inlined from 'main' at lut.c:1459:23: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c select.c -o ../../obj/Linux_64/select.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c func_name.c -o ../../obj/Linux_64/func_name.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c get_thresholds.c -o ../../obj/Linux_64/get_thresholds.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mkchk/check_data.c -o ../../obj/Linux_64/check_data.o ../mkchk/check_data.c: In function 'get_bases': ../mkchk/check_data.c:47:25: warning: variable 'cpos' set but not used [-Wunused-but-set-variable] 47 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ ../mkchk/check_data.c:47:19: warning: variable 'spos' set but not used [-Wunused-but-set-variable] 47 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ g++ ../../obj/Linux_64/lut.o ../../obj/Linux_64/select.o ../../obj/Linux_64/func_name.o ../../obj/Linux_64/get_thresholds.o ../../obj/Linux_64/check_data.o -o ../../rel/Linux_64/lut -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbc.c -o ../../obj/Linux_64/checkbc.o g++ ../../obj/Linux_64/checkbc.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkbc -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqv.c -o ../../obj/Linux_64/checkqv.o checkqv.c: In function 'crossValidate': checkqv.c:84:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 84 | if (base[i].schar != '-') | ^~ checkqv.c:87:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 87 | qv = get_quality_value(base[i].parameter[0], | ^~ g++ ../../obj/Linux_64/checkqv.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkqv -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbcphd.c -o ../../obj/Linux_64/checkbcphd.o checkbcphd.c: In function 'errorStatswithQVs': checkbcphd.c:197:18: warning: unknown escape sequence: '\%' 197 | char c = '\%'; | ^~~~ checkbcphd.c:50:51: warning: variable 'qvo' set but not used [-Wunused-but-set-variable] 50 | Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; | ^~~ checkbcphd.c:50:32: warning: variable 'qvp' set but not used [-Wunused-but-set-variable] 50 | Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; | ^~~ g++ ../../obj/Linux_64/checkbcphd.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkbcphd -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqvphd.c -o ../../obj/Linux_64/checkqvphd.o g++ ../../obj/Linux_64/checkqvphd.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkqvphd -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' make[1]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src' dh_auto_test -O--sourcedirectory=src -O--no-parallel rm -fr -- /tmp/dh-xdg-rundir-S6n9pXA3 create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src -O--no-parallel dh_prep -O--sourcedirectory=src -O--no-parallel rm -f -- debian/tracetuner.substvars rm -fr -- debian/.debhelper/generated/tracetuner/ debian/tracetuner/ debian/tmp/ dh_installdirs -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/bin debian/rules override_dh_auto_install make[1]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg' dh_auto_install find rel -mindepth 2 -type f | xargs -r mv --target-directory=/build/tracetuner-3.0.6~beta+dfsg/debian/tracetuner/usr/bin/ make[1]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg' dh_installdocs -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/share/doc/tracetuner install -d debian/.debhelper/generated/tracetuner cp --reflink=auto -a ./src/README debian/tracetuner/usr/share/doc/tracetuner cp --reflink=auto -a ./doc/RELEASE_NOTES debian/tracetuner/usr/share/doc/tracetuner chmod -R u\+rw,go=rX debian/tracetuner/usr/share/doc install -p -m0644 debian/README.Debian debian/tracetuner/usr/share/doc/tracetuner/README.Debian install -p -m0644 debian/copyright debian/tracetuner/usr/share/doc/tracetuner/copyright dh_installchangelogs -O--sourcedirectory=src -O--no-parallel install -p -m0644 debian/changelog debian/tracetuner/usr/share/doc/tracetuner/changelog.Debian dh_installman -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/share/man/man1/ install -p -m0644 ./debian/mans/train.1 debian/tracetuner/usr/share/man/man1/train.1 install -p -m0644 ./debian/mans/trainphd.1 debian/tracetuner/usr/share/man/man1/trainphd.1 install -p -m0644 ./debian/mans/ttuner.1 debian/tracetuner/usr/share/man/man1/ttuner.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tracetuner/usr/share/man/man1/train.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tracetuner/usr/share/man/man1/trainphd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tracetuner/usr/share/man/man1/ttuner.1 mv debian/tracetuner/usr/share/man/man1/train.1.dh-new debian/tracetuner/usr/share/man/man1/train.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/train.1 mv debian/tracetuner/usr/share/man/man1/trainphd.1.dh-new debian/tracetuner/usr/share/man/man1/trainphd.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/trainphd.1 mv debian/tracetuner/usr/share/man/man1/ttuner.1.dh-new debian/tracetuner/usr/share/man/man1/ttuner.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/ttuner.1 dh_installsystemduser -O--sourcedirectory=src -O--no-parallel dh_perl -O--sourcedirectory=src -O--no-parallel dh_link -O--sourcedirectory=src -O--no-parallel dh_strip_nondeterminism -O--sourcedirectory=src -O--no-parallel dh_compress -O--sourcedirectory=src -O--no-parallel cd debian/tracetuner chmod a-x usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 gzip -9nf usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 cd '/build/tracetuner-3.0.6~beta+dfsg' dh_fixperms -O--sourcedirectory=src -O--no-parallel find debian/tracetuner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tracetuner/usr/share/doc -type f -a -true -a ! -regex 'debian/tracetuner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tracetuner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--sourcedirectory=src -O--no-parallel dh_dwz -a -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/tracetuner/usr/lib/debug/.dwz/i386-linux-gnu/tracetuner.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/tracetuner.debug -- debian/tracetuner/usr/bin/checkbc debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/checkqvphd debian/tracetuner/usr/bin/lut debian/tracetuner/usr/bin/train debian/tracetuner/usr/bin/ttuner objcopy --compress-debug-sections debian/tracetuner/usr/lib/debug/.dwz/i386-linux-gnu/tracetuner.debug dh_strip -a -O--sourcedirectory=src -O--no-parallel install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/aa objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqv debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/aa/3efac44f0ae4a3f0afd93d658af5050039aba0.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/aa/3efac44f0ae4a3f0afd93d658af5050039aba0.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqv objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/aa/3efac44f0ae4a3f0afd93d658af5050039aba0.debug debian/tracetuner/usr/bin/checkqv install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/train debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/11/1ec324c6167ca0c35c16d8dd769061aec51106.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/11/1ec324c6167ca0c35c16d8dd769061aec51106.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/train objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/11/1ec324c6167ca0c35c16d8dd769061aec51106.debug debian/tracetuner/usr/bin/train install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/ttuner debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/88/b3e476791d5c59af0fe93b832fdae9fe850289.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/88/b3e476791d5c59af0fe93b832fdae9fe850289.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/ttuner objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/88/b3e476791d5c59af0fe93b832fdae9fe850289.debug debian/tracetuner/usr/bin/ttuner install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbcphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/62/d0ded8a513b066aedf7429b993cd27c700abf3.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/62/d0ded8a513b066aedf7429b993cd27c700abf3.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbcphd objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/62/d0ded8a513b066aedf7429b993cd27c700abf3.debug debian/tracetuner/usr/bin/checkbcphd install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/5b objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbc debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/5b/75e4fcd596c5590cad6e11a2b9ab22f0b718b9.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/5b/75e4fcd596c5590cad6e11a2b9ab22f0b718b9.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbc objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/5b/75e4fcd596c5590cad6e11a2b9ab22f0b718b9.debug debian/tracetuner/usr/bin/checkbc install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqvphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/84/ac8a04596f0e80ff004729992a9586d591d077.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/84/ac8a04596f0e80ff004729992a9586d591d077.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqvphd objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/84/ac8a04596f0e80ff004729992a9586d591d077.debug debian/tracetuner/usr/bin/checkqvphd install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/lut debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/56/50131f0d174b2fd72e2f4c623378aa354cd9fd.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/56/50131f0d174b2fd72e2f4c623378aa354cd9fd.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/lut objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/56/50131f0d174b2fd72e2f4c623378aa354cd9fd.debug debian/tracetuner/usr/bin/lut install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tracetuner/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tracetuner/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tracetuner/usr/lib/debug install -d debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc ln -s tracetuner debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc/tracetuner-dbgsym dh_makeshlibs -a -O--sourcedirectory=src -O--no-parallel rm -f debian/tracetuner/DEBIAN/shlibs dh_shlibdeps -a -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/DEBIAN dpkg-shlibdeps -Tdebian/tracetuner.substvars debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/train debian/tracetuner/usr/bin/ttuner debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/checkbc debian/tracetuner/usr/bin/checkqvphd debian/tracetuner/usr/bin/lut dh_installdeb -O--sourcedirectory=src -O--no-parallel dh_gencontrol -O--sourcedirectory=src -O--no-parallel echo misc:Depends= >> debian/tracetuner.substvars echo misc:Pre-Depends= >> debian/tracetuner.substvars install -d debian/.debhelper/tracetuner/dbgsym-root/DEBIAN dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -Pdebian/.debhelper/tracetuner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tracetuner-dbgsym "-DDepends=tracetuner (= \${binary:Version})" "-DDescription=debug symbols for tracetuner" "-DBuild-Ids=111ec324c6167ca0c35c16d8dd769061aec51106 5650131f0d174b2fd72e2f4c623378aa354cd9fd 5b75e4fcd596c5590cad6e11a2b9ab22f0b718b9 62d0ded8a513b066aedf7429b993cd27c700abf3 84ac8a04596f0e80ff004729992a9586d591d077 88b3e476791d5c59af0fe93b832fdae9fe850289 aa3efac44f0ae4a3f0afd93d658af5050039aba0" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -Pdebian/tracetuner chmod 0644 -- debian/tracetuner/DEBIAN/control dh_md5sums -O--sourcedirectory=src -O--no-parallel cd debian/tracetuner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tracetuner/DEBIAN/md5sums cd debian/.debhelper/tracetuner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--sourcedirectory=src -O--no-parallel dpkg-deb --root-owner-group --build debian/tracetuner .. dpkg-deb --root-owner-group --build debian/.debhelper/tracetuner/dbgsym-root .. dpkg-deb: building package 'tracetuner' in '../tracetuner_3.0.6~beta+dfsg-3_i386.deb'. dpkg-deb: building package 'tracetuner-dbgsym' in '../tracetuner-dbgsym_3.0.6~beta+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tracetuner_3.0.6~beta+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/54587 and its subdirectories I: Current time: Thu Jul 28 09:57:03 -12 2022 I: pbuilder-time-stamp: 1659045423 Fri Jun 25 15:34:04 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Fri Jun 25 15:34:04 UTC 2021 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Fri Jun 25 15:38:08 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. Fri Jun 25 15:38:08 UTC 2021 I: tracetuner_3.0.6~beta+dfsg-3_i386.changes: Format: 1.8 Date: Fri, 04 Dec 2020 23:43:55 +0100 Source: tracetuner Binary: tracetuner tracetuner-dbgsym Architecture: i386 Version: 3.0.6~beta+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tracetuner - interpretation of DNA Sanger sequencing data Changes: tracetuner (3.0.6~beta+dfsg-3) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/control (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: bb21a48e7ff46e01b14193a97de18d119100f893 997400 tracetuner-dbgsym_3.0.6~beta+dfsg-3_i386.deb 3e88caccd3461584a2448742352a0063ba43131b 4968 tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo 9de5c61eedb2dcb4bb5a55b42ed65d79c1d6578f 345188 tracetuner_3.0.6~beta+dfsg-3_i386.deb Checksums-Sha256: 834ac25615392f887deb43ed64393544aa49f6489084213f01941f5703131e99 997400 tracetuner-dbgsym_3.0.6~beta+dfsg-3_i386.deb 3a257d7a41b5176e75e14bb8eacbb11212ca577ba8520b31302dbae9009c781b 4968 tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo 25b4021548c66ffafc9ce1ca2bcaf778fdb232367a6110b38633410bb3c6c525 345188 tracetuner_3.0.6~beta+dfsg-3_i386.deb Files: 64d792db2e0e7d79319804d340d435d1 997400 debug optional tracetuner-dbgsym_3.0.6~beta+dfsg-3_i386.deb 3038c964a0d47daaa4773d0d58071faf 4968 science optional tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo 1b971be19a4485c745f93be79992f1b8 345188 science optional tracetuner_3.0.6~beta+dfsg-3_i386.deb Fri Jun 25 15:38:10 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.xgsNMQchnN/tracetuner_3.0.6~beta+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.xgsNMQchnN/tracetuner_3.0.6~beta+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.xgsNMQchnN/tracetuner_3.0.6~beta+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.xgsNMQchnN/b1/tracetuner_3.0.6~beta+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.xgsNMQchnN/b2/tracetuner_3.0.6~beta+dfsg-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.290s) 0.289s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jun 25 15:38:11 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 25 15:38:11 UTC 2021 I: tracetuner from bullseye built successfully and reproducibly on i386. Fri Jun 25 15:38:12 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jun 25 15:38:12 UTC 2021 I: Submitting 8.0K b1/tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo.asc Fri Jun 25 15:38:14 UTC 2021 I: Submitting 8.0K b2/tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo.asc Fri Jun 25 15:38:15 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 25 15:38:15 UTC 2021 I: Done submitting .buildinfo files. Fri Jun 25 15:38:15 UTC 2021 I: Removing signed tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo.asc files: removed './b1/tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo.asc' removed './b2/tracetuner_3.0.6~beta+dfsg-3_i386.buildinfo.asc'