Wed Apr 3 22:03:38 UTC 2024 I: starting to build cnrun/experimental/i386 on jenkins on '2024-04-03 22:03' Wed Apr 3 22:03:38 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/20930/console.log Wed Apr 3 22:03:38 UTC 2024 I: Downloading source for experimental/cnrun=2.1.0-3 --2024-04-03 22:03:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/cnrun/cnrun_2.1.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘cnrun_2.1.0-3.dsc’ 0K .. 100% 274M=0s 2024-04-03 22:03:38 (274 MB/s) - ‘cnrun_2.1.0-3.dsc’ saved [2224/2224] Wed Apr 3 22:03:38 UTC 2024 I: cnrun_2.1.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cnrun Binary: libcnrun2, libcnrun2-dev, cnrun-tools, lua-cnrun Architecture: any Version: 2.1.0-3 Maintainer: Debian Med Packaging Team Uploaders: Andrei Zavada Homepage: http://johnhommer.com/academic/code/cnrun Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/cnrun Vcs-Git: https://salsa.debian.org/med-team/cnrun.git Build-Depends: debhelper-compat (= 13), autoconf-archive, texinfo, libgomp1, pkg-config, libgsl-dev | libgsl0-dev, libxml2-dev, liblua5.2-dev | liblua5.3-dev, lua5.2 | lua5.3 Package-List: cnrun-tools deb science optional arch=any libcnrun2 deb science optional arch=any libcnrun2-dev deb libdevel optional arch=any lua-cnrun deb science optional arch=any Checksums-Sha1: fa51b36868b9f960312fd6230271faf8c059ebfe 73656 cnrun_2.1.0.orig.tar.xz 8a7ba2dd4109424193ac0c43d1ff5089a9aca4bf 7940 cnrun_2.1.0-3.debian.tar.xz Checksums-Sha256: 11a82725d72084745ba52efa0b6d221401e516db375a6889bb8356f5d0cc8ce7 73656 cnrun_2.1.0.orig.tar.xz 191fa54cf3a17c851aa06d223579dec56c5adb0db1913e4158b2857d6555fe8f 7940 cnrun_2.1.0-3.debian.tar.xz Files: 1be99ad2341081dc50a22aa0c94a7691 73656 cnrun_2.1.0.orig.tar.xz a3419b9dc065ee4771ad66a8c52df92b 7940 cnrun_2.1.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmGw9WoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHpPA//V3rX0hfuOuUljn/t07iIPPtN+dN8yqlz S0Sq7V/Je59og9X/PKMHJwP7Bq9JbAafLCoVI5FJwcB1eQINyTAorAYTYkANbjiu zdovC7RV4eUsmlqpBn+sVsEGoCgmKyh3xFXp4u9rlZ4AzdUqTuLxubO+R7LAimfD L6vzMGHW2o0pYJlAk2uU5kpra7P+qwBQY16YSm1I/J+GxTHeuel63Cvan+0l0Icw rWmHjTDXMFhpnTdHfKtG6U11u3KqIqdi69EMgA65/ibEMQKEQDziVlrNKWyp67gp R9GRm+x5fm8JQW65vUGvzGX4bvP3WCeJqwdTMtMZNnKh5f+u4wIDr5MVa2VYNA/6 EOnYMUar2IP3DXtLvqWUK6MMIpVOgcy8ZdHyZhduXElyhQmVF9HljJoKo4n9vWhX or+mcNXBeOJ6UWvf3LO4hpoeFEa9NXUA/VEcnkFM9TCwgkC8V8F8SaZQC4FAbA4J TW/FGdk1GZ2ZWJgX8yWOya0gBIfbHd+bWBP4zQrCuOts5wrlPlZz+Xgvh+DtN9hc 78bryWetYbV3ntWSxlWVHipz/t7vweB1FrzLgovGAtNnMUVaBvdtrKHNH8fQcnRy eQ3E9sm/BtLrBIa9aAz0OMsyoj0Jf2hVAgoJ0qiAe8OcUUpOyKDvl/utFRxwuxTW EJxkrilsKsU= =t+id -----END PGP SIGNATURE----- Wed Apr 3 22:03:38 UTC 2024 I: Checking whether the package is not for us Wed Apr 3 22:03:38 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Wed Apr 3 22:03:38 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Wed Apr 3 22:07:00 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 3 10:03:41 -12 2024 I: pbuilder-time-stamp: 1712181821 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [cnrun_2.1.0-3.dsc] I: copying [./cnrun_2.1.0.orig.tar.xz] I: copying [./cnrun_2.1.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 8 18:11:54 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cnrun_2.1.0-3.dsc: no acceptable signature found dpkg-source: info: extracting cnrun in cnrun-2.1.0 dpkg-source: info: unpacking cnrun_2.1.0.orig.tar.xz dpkg-source: info: unpacking cnrun_2.1.0-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25969/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='4b13d8867a7940e5920b54c301cd3b15' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25969' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.O8XQ1J2j/pbuilderrc_kYYj --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.O8XQ1J2j/b1 --logfile b1/build.log cnrun_2.1.0-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 2 07:34 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25969/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), autoconf-archive, texinfo, libgomp1, pkg-config, libgsl-dev | libgsl0-dev, libxml2-dev, liblua5.2-dev | liblua5.3-dev, lua5.2 | lua5.3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19702 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev | libgsl0-dev; however: Package libgsl-dev is not installed. Package libgsl0-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on liblua5.2-dev | liblua5.3-dev; however: Package liblua5.2-dev is not installed. Package liblua5.3-dev is not installed. pbuilder-satisfydepends-dummy depends on lua5.2 | lua5.3; however: Package lua5.2 is not installed. Package lua5.3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu-dev{a} libicu72{a} liblua5.2-0{a} liblua5.2-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses-dev{a} libncurses6{a} libpipeline1{a} libpkgconf3{a} libreadline-dev{a} libreadline8t64{a} libsub-override-perl{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxml2-dev{a} lua5.2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} readline-common{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl libtool-bin libwww-perl libxml-sax-expat-perl lynx wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 37.9 MB of archives. After unpacking 161 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 autoconf-archive all 20220903-3 [775 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-4 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-3+b1 [1195 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.39.3-11 [93.7 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.0-4 [1418 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 26 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1 [194 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-4+b1 [216 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libgslcblas0 i386 2.7.1+dfsg-6+b1 [97.7 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libgsl27 i386 2.7.1+dfsg-6+b1 [920 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libgsl-dev i386 2.7.1+dfsg-6+b1 [1169 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-4+b1 [10.6 MB] Get: 39 http://deb.debian.org/debian unstable/main i386 liblua5.2-0 i386 5.2.4-3+b2 [127 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libncurses6 i386 6.4+20240113-1 [111 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libncurses-dev i386 6.4+20240113-1 [380 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libreadline-dev i386 8.2-4 [164 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 liblua5.2-dev i386 5.2.4-3+b2 [159 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libpkgconf3 i386 1.8.1-1+b2 [38.5 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libxml-libxml-perl i386 2.0207+dfsg+really+2.0134-1+b3 [323 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libxml2-dev i386 2.9.14+dfsg-1.3+b2 [849 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 lua5.2 i386 5.2.4-3+b2 [114 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 pkgconf-bin i386 1.8.1-1+b2 [30.2 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 pkgconf i386 1.8.1-1+b2 [26.2 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 pkg-config i386 1.8.1-1+b2 [14.0 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 tex-common all 6.18 [32.5 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 texinfo-lib i386 7.1-3+b1 [232 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 texinfo all 7.1-3 [1748 kB] Fetched 37.9 MB in 2s (19.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19702 files and directories currently installed.) Preparing to unpack .../00-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3+b1_i386.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.39.3-11_i386.deb ... Unpacking bsdextrautils (2.39.3-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.0-4_i386.deb ... Unpacking man-db (2.12.0-4) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../40-libncurses6_6.4+20240113-1_i386.deb ... Unpacking libncurses6:i386 (6.4+20240113-1) ... Selecting previously unselected package libncurses-dev:i386. Preparing to unpack .../41-libncurses-dev_6.4+20240113-1_i386.deb ... Unpacking libncurses-dev:i386 (6.4+20240113-1) ... Selecting previously unselected package libreadline-dev:i386. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cnrun-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cnrun_2.1.0-3_source.changes dpkg-buildpackage: info: source package cnrun dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' rm -f config.log dh_clean make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: warning: The macro `AC_PROG_LD' is obsolete. configure.ac:13: You should run autoupdate. m4/libtool.m4:3361: AC_PROG_LD is expanded from... configure.ac:13: the top level configure.ac:14: warning: The macro `AM_DISABLE_STATIC' is obsolete. configure.ac:14: You should run autoupdate. m4/ltoptions.m4:260: AM_DISABLE_STATIC is expanded from... configure.ac:14: the top level configure.ac:48: warning: The macro `AC_TRY_RUN' is obsolete. configure.ac:48: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... configure.ac:21: AC_CXX_STDCPP11_FEATURES is expanded from... configure.ac:48: the top level configure.ac:82: warning: AC_OUTPUT should be used without arguments. configure.ac:82: You should run autoupdate. configure.ac:13: installing './compile' configure.ac:13: installing './config.guess' configure.ac:13: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' doc/lua-api/Makefile.am:1: installing 'doc/lua-api/mdate-sh' doc/lua-api/Makefile.am:1: installing 'doc/lua-api/texinfo.tex' src/libcnrun/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' dh_auto_configure -- --enable-tools --enable-lua-api-docs ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-tools --enable-lua-api-docs checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking how to print strings... printf checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether g++ has all required c++11 features... yes checking for g++ option to support OpenMP... -fopenmp checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gsl libxml-2.0... yes checking for lua... /usr/bin/lua checking if /usr/bin/lua is a Lua interpreter... yes checking for lua version... 5.2 checking for lua platform... unknown checking for lua script directory... ${prefix}/local/share/lua/5.2 checking for lua module directory... ${exec_prefix}/lib/lua/5.2 checking if LUA_VERSION is defined... yes checking for library containing exp... none required checking for library containing dlopen... none required checking for library containing lua_load... -llua5.2 checking if LUA_VERSION is defined... yes checking for lua.h... no checking for lualib.h... no checking for lauxlib.h... no checking for luaconf.h... no checking for Lua headers in... /usr/include/lua5.2 checking for lua.h... yes checking for lualib.h... yes checking for lauxlib.h... yes checking for luaconf.h... yes checking for Lua header version... 5.2 checking if Lua header version matches 5.2... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libcnrun.pc config.status: creating src/Makefile config.status: creating src/libstilton/Makefile config.status: creating src/libcnrun/Makefile config.status: creating src/lua-cnrun/Makefile config.status: creating doc/Makefile config.status: creating doc/lua-api/Makefile config.status: creating man/spike2sdf.1 config.status: creating man/hh-latency-estimator.1 config.status: creating src/tools/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ** Configuration summary for cnrun 2.1.0: PREFIX: /usr CXX: g++ (g++ (Debian 13.2.0-23) 13.2.0) CXXFLAGS: -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security LDFLAGS: -Wl,-z,relro LUA: 5.2 (execdir: ${exec_prefix}/lib/lua/5.2) build tools: yes build lua API docs: yes make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' dh_auto_build make -j4 make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' make all-recursive make[2]: Entering directory '/build/reproducible-path/cnrun-2.1.0' Making all in src make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src' Making all in libstilton make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/libstilton' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstilton.o libstilton.cc In file included from libstilton.cc:25: string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ string.hh:62:20: note: remove 'std::move' call string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ string.hh:72:20: note: remove 'std::move' call In file included from libstilton.cc:26: alg.hh: At global scope: alg.hh:71:44: warning: 'pure' attribute on function returning 'void' [-Wattributes] 71 | ensure_within( T& v, const T& l, const T& h) | ^ libstilton.cc: In function 'std::string cnrun::stilton::str::svasprintf(const char*, va_list)': libstilton.cc:71:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 71 | return move(ret); | ~~~~^~~~~ libstilton.cc:71:20: note: remove 'std::move' call libstilton.cc: In function 'std::string cnrun::stilton::str::sasprintf(const char*, ...)': libstilton.cc:89:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 89 | return move(ret); | ~~~~^~~~~ libstilton.cc:89:20: note: remove 'std::move' call libstilton.cc: In function 'std::string cnrun::stilton::str::trim(const std::string&)': libstilton.cc:106:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 106 | return move(r); | ~~~~^~~ libstilton.cc:106:20: note: remove 'std::move' call libstilton.cc: In function 'std::string cnrun::stilton::str::pad(const std::string&, size_t)': libstilton.cc:115:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 115 | return move(r); | ~~~~^~~ libstilton.cc:115:20: note: remove 'std::move' call libstilton.cc: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, const char*)': libstilton.cc:132:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 132 | return move(acc); | ~~~~^~~~~ libstilton.cc:132:20: note: remove 'std::move' call libstilton.cc: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, const char*)': libstilton.cc:147:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 147 | return move(acc); | ~~~~^~~~~ libstilton.cc:147:20: note: remove 'std::move' call libstilton.cc: In function 'std::string cnrun::stilton::str::double_dot_aligned_s(double, size_t, size_t)': libstilton.cc:326:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 326 | return move(ret); | ~~~~^~~~~ libstilton.cc:326:20: note: remove 'std::move' call rm -f liba.a ar cru liba.a libstilton.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib liba.a make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/libstilton' Making all in libcnrun make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/libcnrun' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model/cycle.lo model/cycle.cc /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model/nmlio.lo model/nmlio.cc /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model/sources.lo model/sources.cc /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model/struct.lo model/struct.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model/sources.cc -fPIC -DPIC -o model/.libs/sources.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model/nmlio.cc -fPIC -DPIC -o model/.libs/nmlio.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model/struct.cc -fPIC -DPIC -o model/.libs/struct.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model/cycle.cc -fPIC -DPIC -o model/.libs/cycle.o In file included from model/struct.cc:24: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call In file included from model/sources.cc:24: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call In file included from model/../units/base-unit.hh:26, from model/../units/base-neuron.hh:27, from model/model.hh:41, from model/nmlio.cc:21: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ model/model.hh:115:31: note: remove 'std::move' call In file included from model/struct.cc:25: model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ model/model.hh:115:31: note: remove 'std::move' call In file included from model/../units/base-unit.hh:26, from model/../units/base-neuron.hh:27, from model/model.hh:41, from model/cycle.cc:22: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ model/model.hh:115:31: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model/tags.lo model/tags.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model/tags.cc -fPIC -DPIC -o model/.libs/tags.o In file included from model/tags.cc:19: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o units/base-unit.lo units/base-unit.cc In file included from model/tags.cc:20: model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ model/model.hh:115:31: note: remove 'std::move' call model/tags.cc: In member function 'std::vector cnrun::CModel::list_units(const std::string&) const': model/tags.cc:34:28: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 34 | return move(Q); | ~~~~^~~ model/tags.cc:34:28: note: remove 'std::move' call model/tags.cc:41:20: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 41 | return move(Q); | ~~~~^~~ model/tags.cc:41:20: note: remove 'std::move' call libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c units/base-unit.cc -fPIC -DPIC -o units/.libs/base-unit.o model/struct.cc: In member function 'void cnrun::CModel::cull_deaf_synapses()': model/struct.cc:816:46: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 39 [-Wformat-truncation=] 816 | "%s:%zu", Y._source->_label, Y._targets.size()); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from model/struct.cc:19: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void cnrun::CModel::cull_deaf_synapses()' at model/struct.cc:815:41: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 3 and 51 bytes into a destination of size 39 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ model/struct.cc: In member function 'void cnrun::CModel::coalesce_synapses()': model/struct.cc:909:46: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 39 [-Wformat-truncation=] 909 | "%s:%zu", U1._source->label(), U1._targets.size()); | ^ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void cnrun::CModel::coalesce_synapses()' at model/struct.cc:908:41: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 3 and 51 bytes into a destination of size 39 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from units/base-unit.hh:26, from units/base-unit.cc:26: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o units/hosted-neurons.lo units/hosted-neurons.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c units/hosted-neurons.cc -fPIC -DPIC -o units/.libs/hosted-neurons.o In file included from units/base-unit.cc:27: ./model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': ./model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./model/model.hh:115:31: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o units/hosted-synapses.lo units/hosted-synapses.cc In file included from ./model/../units/base-unit.hh:26, from ./model/../units/base-neuron.hh:27, from ./model/model.hh:41, from units/hosted-neurons.cc:24: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c units/hosted-synapses.cc -fPIC -DPIC -o units/.libs/hosted-synapses.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o units/standalone-neurons.lo units/standalone-neurons.cc ./model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': ./model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./model/model.hh:115:31: note: remove 'std::move' call libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c units/standalone-neurons.cc -fPIC -DPIC -o units/.libs/standalone-neurons.o units/base-unit.cc: In member function 'void cnrun::C_BaseUnit::set_population_id(const char*, const char*)': units/base-unit.cc:113:16: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 40 equals destination size [-Wstringop-truncation] 113 | strncpy( _label, prelabel.c_str(), max_label_size); | ^ units/base-unit.cc:115:24: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 40 equals destination size [-Wstringop-truncation] 115 | strncpy( _population, pop_, max_label_size); | ^ In file included from units/base-unit.hh:26, from units/base-synapse.hh:28, from units/hosted-synapses.hh:25, from units/hosted-synapses.cc:20: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call units/base-unit.cc: In member function 'cnrun::C_BaseSynapse* cnrun::C_BaseSynapse::clone_to_target(cnrun::C_BaseNeuron*, double)': units/base-unit.cc:640:48: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 39 [-Wformat-truncation=] 640 | snprintf( _label, max_label_size-1, "%s:%zu", _source->_label, _targets.size()); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from units/base-unit.cc:19: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'cnrun::C_BaseSynapse* cnrun::C_BaseSynapse::clone_to_target(cnrun::C_BaseNeuron*, double)' at units/base-unit.cc:640:17: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 3 and 51 bytes into a destination of size 39 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from units/hosted-synapses.cc:23: ./model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': ./model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./model/model.hh:115:31: note: remove 'std::move' call units/base-unit.cc: In member function 'cnrun::C_BaseSynapse* cnrun::C_BaseSynapse::make_clone_independent(cnrun::C_BaseNeuron*)': units/base-unit.cc:667:48: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 39 [-Wformat-truncation=] 667 | snprintf( _label, max_label_size-1, "%s:%zu", _source->_label, _targets.size()); | ^ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'cnrun::C_BaseSynapse* cnrun::C_BaseSynapse::make_clone_independent(cnrun::C_BaseNeuron*)' at units/base-unit.cc:667:17: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 3 and 51 bytes into a destination of size 39 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ units/base-unit.cc: In constructor 'cnrun::C_BaseSynapse::C_BaseSynapse(cnrun::TUnitType, cnrun::C_BaseNeuron*, cnrun::C_BaseNeuron*, double, cnrun::CModel*, int)': units/base-unit.cc:618:48: warning: ':1' directive output may be truncated writing 2 bytes into a region of size between 0 and 39 [-Wformat-truncation=] 618 | snprintf( _label, max_label_size-1, "%s:1", _source->_label); | ^~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'cnrun::C_BaseSynapse::C_BaseSynapse(cnrun::TUnitType, cnrun::C_BaseNeuron*, cnrun::C_BaseNeuron*, double, cnrun::CModel*, int)' at units/base-unit.cc:618:17: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 3 and 42 bytes into a destination of size 39 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from ./model/../units/base-unit.hh:26, from ./model/../units/base-neuron.hh:27, from ./model/model.hh:41, from units/standalone-neurons.cc:21: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o units/standalone-synapses.lo units/standalone-synapses.cc ./model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': ./model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./model/model.hh:115:31: note: remove 'std::move' call libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c units/standalone-synapses.cc -fPIC -DPIC -o units/.libs/standalone-synapses.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o units/types.lo units/types.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c units/types.cc -fPIC -DPIC -o units/.libs/types.o In file included from units/types.cc:20: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call In file included from ./model/../units/base-unit.hh:26, from ./model/../units/base-neuron.hh:27, from ./model/model.hh:41, from units/standalone-synapses.cc:20: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call ./model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': ./model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./model/model.hh:115:31: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=link g++ -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I. -shared -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -shared -version-info 2:0:0 -Wl,-z,relro -o libcnrun.la -rpath /usr/lib/i386-linux-gnu model/cycle.lo model/nmlio.lo model/sources.lo model/struct.lo model/tags.lo units/base-unit.lo units/hosted-neurons.lo units/hosted-synapses.lo units/standalone-neurons.lo units/standalone-synapses.lo units/types.lo ../libstilton/liba.a -lgsl -lgslcblas -lm -lxml2 *** Warning: Linking the shared library libcnrun.la against the *** static library ../libstilton/liba.a is not portable! libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/13/crtbeginS.o model/.libs/cycle.o model/.libs/nmlio.o model/.libs/sources.o model/.libs/struct.o model/.libs/tags.o units/.libs/base-unit.o units/.libs/hosted-neurons.o units/.libs/hosted-synapses.o units/.libs/standalone-neurons.o units/.libs/standalone-synapses.o units/.libs/types.o ../libstilton/liba.a -lgsl -lgslcblas -lxml2 -L/usr/lib/gcc/i686-linux-gnu/13 -L/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/13/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/13/crtendS.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcnrun.so.2 -o .libs/libcnrun.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libcnrun.so.2" && ln -s "libcnrun.so.2.0.0" "libcnrun.so.2") libtool: link: (cd ".libs" && rm -f "libcnrun.so" && ln -s "libcnrun.so.2.0.0" "libcnrun.so") libtool: link: ( cd ".libs" && rm -f "libcnrun.la" && ln -s "../libcnrun.la" "libcnrun.la" ) make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/libcnrun' Making all in lua-cnrun make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/lua5.2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o commands.lo commands.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/lua5.2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c commands.cc -fPIC -DPIC -o .libs/commands.o In file included from commands.cc:23: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call In file included from cnhost.hh:25, from commands.cc:24: ../../src/libcnrun/model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': ../../src/libcnrun/model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libcnrun/model/model.hh:115:31: note: remove 'std::move' call cnhost.hh: In member function 'std::__cxx11::list cnrun::CHost::list_models() const': cnhost.hh:70:36: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 70 | return move(L); | ~~~~^~~ cnhost.hh:70:36: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=link g++ -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/lua5.2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -shared -avoid-version -module -Wl,-z,relro -o libcnrun-lua.la -rpath /usr/lib/i386-linux-gnu/cnrun commands.lo ../libcnrun/libcnrun.la -lgsl -lgslcblas -lm -lxml2 -llua5.2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/13/crtbeginS.o .libs/commands.o -Wl,-rpath -Wl,/build/reproducible-path/cnrun-2.1.0/src/libcnrun/.libs ../libcnrun/.libs/libcnrun.so -lgsl -lgslcblas -lxml2 -llua5.2 -L/usr/lib/gcc/i686-linux-gnu/13 -L/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/13/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/13/crtendS.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcnrun-lua.so -o .libs/libcnrun-lua.so libtool: link: ( cd ".libs" && rm -f "libcnrun-lua.la" && ln -s "../libcnrun-lua.la" "libcnrun-lua.la" ) make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' Making all in tools make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/tools' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o spike2sdf.o spike2sdf.cc g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hh-latency-estimator.o hh-latency-estimator.cc In file included from ../../src/libcnrun/units/base-unit.hh:26, from ../../src/libcnrun/units/base-neuron.hh:27, from ../../src/libcnrun/units/hosted-neurons.hh:24, from hh-latency-estimator.cc:19: ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens(const std::string&, char)': ../../src/libstilton/string.hh:62:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 62 | return move(tokens( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:62:20: note: remove 'std::move' call ../../src/libstilton/string.hh: In function 'std::__cxx11::list > cnrun::stilton::str::tokens_trimmed(const std::string&, char)': ../../src/libstilton/string.hh:72:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 72 | return move(tokens_trimmed( s_, sep)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libstilton/string.hh:72:20: note: remove 'std::move' call In file included from hh-latency-estimator.cc:22: ../../src/libcnrun/model/model.hh: In member function 'std::vector cnrun::CModel::list_units() const': ../../src/libcnrun/model/model.hh:115:31: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 115 | { return move(vector (units.begin(), units.end())); } | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../src/libcnrun/model/model.hh:115:31: note: remove 'std::move' call /bin/bash ../../libtool --tag=CXX --mode=link g++ -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o spike2sdf spike2sdf.o libtool: link: g++ -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -o spike2sdf spike2sdf.o -fopenmp /bin/bash ../../libtool --tag=CXX --mode=link g++ -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o hh-latency-estimator hh-latency-estimator.o ../libcnrun/libcnrun.la -lgsl -lgslcblas -lm -lxml2 libtool: link: g++ -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/hh-latency-estimator hh-latency-estimator.o ../libcnrun/.libs/libcnrun.so -lgsl -lgslcblas -lm -lxml2 -fopenmp make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/tools' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src' Making all in doc make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc' Making all in lua-api make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc/lua-api' Updating ./version.texi restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/bash '/build/reproducible-path/cnrun-2.1.0/missing' makeinfo --version) >/dev/null 2>&1; then \ for f in cnrun-lua-api.info cnrun-lua-api.info-[0-9] cnrun-lua-api.info-[0-9][0-9] cnrun-lua-api.i[0-9] cnrun-lua-api.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/bash '/build/reproducible-path/cnrun-2.1.0/missing' makeinfo -I . \ -o cnrun-lua-api.info cnrun-lua-api.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./cnrun-lua-api.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc rm -rf cnrun-lua-api.htp if /bin/bash '/build/reproducible-path/cnrun-2.1.0/missing' makeinfo --html -I . \ -o cnrun-lua-api.htp cnrun-lua-api.texi; \ then \ rm -rf cnrun-lua-api.html && mv cnrun-lua-api.htp cnrun-lua-api.html; \ else \ rm -rf cnrun-lua-api.htp; exit 1; \ fi make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc/lua-api' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc' make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' make[2]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' dh_auto_test make -j4 test "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' (cd doc/examples && \ _cwd=`pwd`; rm -rf _test && mkdir -p _test && cd _test && \ ln -s ../../../src/lua-cnrun/.libs/libcnrun-lua.so cnrun.so && \ ln -s ../m.nml . && \ LUA_CPATH="./?.so;$LUA_CPATH" \ LD_PRELOAD=../../../src/libcnrun/.libs/libcnrun.so.2.0.0:$LD_PRELOAD \ lua ../example1.lua; e=$?; cd $_cwd && rm -rf _test; exit $e) newlib cnrun Dump units ===== Neurons: * [HH] Hodgkin-Huxley by Traub and Miles (1991): gNa 7.15 Na conductance, μS/cm² ENa 50. Na equi potential, mV gK 1.43 K conductance, μS/cm² EK -95. K equi potential, mV gl .0267 Leak conductance, μS/cm² El -63.563 Leak equi potential, mV Cmem .143 Membrane specific capacitance, μF/cm² .alpha_m_a .32 .alpha_m_a .alpha_m_b 52. .alpha_m_b .alpha_m_c 4. .alpha_m_c .beta_m_a .28 .beta_m_a .beta_m_b 25. .beta_m_b .beta_m_c 5. .beta_m_c .alpha_h_a .128 .alpha_h_a .alpha_h_b 48. .alpha_h_b .alpha_h_c 18. .alpha_h_c .beta_h_a 4. .beta_h_a .beta_h_b 25. .beta_h_b .beta_h_c 5. .beta_h_c .alpha_n_a .032 .alpha_n_a .alpha_n_b 50. .alpha_n_b .alpha_n_c 5. .alpha_n_c .beta_n_a .5 .beta_n_a .beta_n_b 55. .beta_n_b .beta_n_c 40. .beta_n_c Idc 0 Externally applied DC, nA v: E -66.81 Membrane potential, mV v: .m .023 Prob. of Na channel activation v: .h .8 1-Prob. of Na channel blocking v: .n .22 Prob. of K channel activation * [HHRate] Rate-based model of the Hodgkin-Huxley neuron: a .185 a, Hz I0 .0439 I₀, nA r .564 r in F(I) = a (I-I₀)^r Idc 0 Externally applied DC, nA v: F 0 Spiking rate, Hz * [HH2] Hodgkin-Huxley by Traub & Miles w/ K leakage: gNa 7.15 Na conductance, μS/cm² ENa 50. Na equi potential, mV gK 1.43 K conductance, μS/cm² EK -95. K equi potential, mV gl .0267 Leak conductance, μS/cm² El -63.56 Leak equi potential, mV Cmem .143 Membrane specific capacitance, μF/cm² gKl .00572 K leakage conductance, μS/cm² EKl -95. K leakage equi potential, mV .alpha_m_a .32 .alpha_m_a .alpha_m_b 52. .alpha_m_b .alpha_m_c 4. .alpha_m_c .beta_m_a .28 .beta_m_a .beta_m_b 25. .beta_m_b .beta_m_c 5. .beta_m_c .alpha_h_a .128 .alpha_h_a .alpha_h_b 48. .alpha_h_b .alpha_h_c 18. .alpha_h_c .beta_h_a 4. .beta_h_a .beta_h_b 25. .beta_h_b .beta_h_c 5. .beta_h_c .alpha_n_a .032 .alpha_n_a .alpha_n_b 50. .alpha_n_b .alpha_n_c 5. .alpha_n_c .beta_n_a .5 .beta_n_a .beta_n_b 55. .beta_n_b .beta_n_c 40. .beta_n_c Idc 0 Externally applied DC, nA v: E -66.56 Membrane potential, mV v: .m .0217 Prob. of Na channel activation v: .h .993 1-Prob. of Na channel blocking v: .n .051 Prob. of K channel activation * [EC] Entorhinal Cortex neuron: gNa 7.15 Na conductance, μS/cm² ENa 50. Na equi potential, mV gK 1.43 K conductance, μS/cm² EK -95. K equi potential, mV gl .021 Leak conductance, μS/cm² El -55. Leak equi potential, mV Cmem .286 Membrane capacity density, μF/cm² Idc 0 Externally applied DC, nA gKl .035 K leakage conductance, μS/cm² EKl -95. K leakage equi potential, mV V0 65. Total equi potential, mV gh1 .0185 gh1 gh2 .01 gh2 Vh -20. Vh, mV v: E -64.1251 Membrane potential v: .m .0176331 Prob. of Na channel activation v: .h .994931 Prob. of not Na channel blocking v: .n .0433969 Prob. of K channel activation v: .Ih1 .443961 Ih1 activation v: .Ih2 .625308 Ih2 activation * [ECA] Entorhinal Cortex (A) neuron: gNa 52. Na conductance, μS/cm² ENa 55. Na equi potential, mV gK 11. K conductance, μS/cm² EK -90. K equi potential, mV gl .5 Leak conductance, μS/cm² El -65. Leak equi potential, mV Cmem 1.5 Membrane capacity density, μF/cm² Idc 0 Externally applied DC, nA gNap .5 gNap gh 1.5 gh Vh -20. Vh v: E -53.77902178 Membrane potential v: .m .02624064 Prob. of Na channel activation v: .h .94618311 Prob. of Na channel blocking v: .n .11359159 Prob. of K channel activation v: .mNap .08109646 mNap v: .Ih1 .06918464 Ih1 activation v: .Ih2 .09815938 Ih2 activation * [DotPoisson] Duration-less spike Poisson oscillator: lambda .02 Rate λ, 1/msec Vrst -60. Resting potential, mV Vfir 20. Potential when firing, mV v: E -60. Membrane potential, mV v: nspk 0 Spikes recently fired * [Poisson] Poisson oscillator: lambda .02 Rate λ, 1/msec trel 0 Input neuron resting potential, mV trel+trfr 0 Input neuron potential when firing, mV Vrst -60. Spike time, msec Vfir 20. Spike time + refractory period, msec v: E -60. Membrane potential E, mV * [Colpitts] Colpitts oscillator: a 1. a g .07970000 g q .6898 q eta 6.2723 η v: x0 .02 x0 v: x1 .69 x1 v: x2 .53 x2 * [VdPol] Van der Pol oscillator: eta 1. η omegasq .1 ω² v: A .1 Amplitude v: v 0 v * [DotPulse] Dot Pulse generator: f 10. Frequency f, Hz Vrst -60. Resting potential Vrst, mV Vfir 20. Firing potential Vfir, mV v: E -60. Membrane potential E, mV v: nspk 0 Spikes recently fired * [NMap] Map neuron: Vspike 60. Spike amplitude factor, mV alpha 3.000244 "Steepness / size" parameter α gamma -2.466349 "Shift / excitation" parameter γ beta 2.64 Input sensitivity β, MΩ Idc 0 External DC, nA v: E -50. Membrane potential E, mV ===== Synapses: * [AB_pp] Alpha-Beta synapse (Destexhe, Mainen, Sejnowsky, 1994): Esyn 0 Reversal potential Esyn, mV Epre -20. Presyn threshold potential Epre, mV alpha .5 Rise rate α, 1/msec beta .05 Decay rate β, 1/msec trel 5. Time of transmitter release, msec v: S 0 Amount of neurotransmitter released S * [AB_tt] Alpha-Beta synapse (tonic->tonic): Ediff -60. Assumed (target->E - Esyn), mV alpha .27785151 Rise rate α, 1/msec beta .05 Decay rate β, 1/msec T 5. Refractory period T, msec v: S 0 Amount of neurotransmitter released S * [AB_Mx_pp] Multiplexing Alpha-Beta synapse for use with durationless units as source (phasic->phasic): Esyn 0 Reversal potential Esyn, mV Epre -20. Presyn threshold potential Epre, mV alpha .27785151 Rise rate α, 1/msec beta .05 Decay rate β, 1/msec trel 5. Time of transmitter release, msec v: S 0 Amount of neurotransmitter released S * [AB_Mx_pt] Multiplexing Alpha-Beta synapse for use with durationless units as source (phasic->tonic): Ediff -60. Assumed (target->E - Esyn), mV Epre -20. Presyn threshold potential Epre, mV alpha .27785151 Rise rate α, 1/msec beta .05 Decay rate β, 1/msec trel 5. Time of transmitter release, msec v: S 0 Amount of neurotransmitter released S * [ABMinus_pp] Alpha-Beta synapse w/out (1-S) term: Esyn 0 Reversal potential Esyn, mV Epre -20. Presyn threshold potential Epre, mV alpha .27785151 Rise rate α, 1/msec beta .05 Decay rate β, 1/msec trel 5. Time of transmitter release, msec v: S 0 Amount of neurotransmitter released S * [Rall_pp] Rall synapse (Rall, 1967): Esyn 0 Reversal potential, mV Epre -20. Presynaptic threshold potential, mV tau 2. τ, 1/msec v: S 0 Amount of neurotransmitter released S v: R 0 Amount of neurotransmitter absorbed R * [Map] Map synapse: tau 18.94463 Decay rate time constant τ, 1/msec delta .25 Release quantile δ Vrev 0 Reversal potential Vrev, mV v: S 0 Amount of neurotransmitter released S * [Map_Mx] Multiplexing Map synapse: tau 18.94463 Decay rate time constant τ, 1/msec delta .25 Release quantile δ Vrev 0 Reversal potential Vrev, mV v: S 0 Amount of neurotransmitter released S Obtain context ok Create model ok ok Model(s): 2 Import NML Model "FAFA": Merging topology from m.nml 1 instance(s) of type "HH" in population "LN1" 1 instance(s) of type "HH" in population "PN" 1 instance(s) of type "HH" in population "LNz" 1 instance(s) of type "HH" in population "PNi" 1 instance(s) of type "DotPoisson" in population "ORNb" 1 instance(s) of type "HH" in population "LN2" 1 instance(s) of type "DotPoisson" in population "ORNa" Total 7 population(s) 1 connection(s) of type "AB" in projection "LNz-LN1" 1 connection(s) of type "AB" in projection "LN2-LNz" 1 connection(s) of type "AB" in projection "ORNb-LNz" 1 connection(s) of type "AB" in projection "ORNa-LNz" 1 connection(s) of type "AB" in projection "LN1-LNz" 1 connection(s) of type "AB" in projection "ORNb-LN2" 1 connection(s) of type "AB" in projection "LN2-LN1" 1 connection(s) of type "AB" in projection "LN1-LN2" 1 connection(s) of type "AB" in projection "ORNa-LN1" 1 connection(s) of type "AB" in projection "LNz-PNi" 1 connection(s) of type "AB" in projection "PNi-PN" 1 connection(s) of type "AB" in projection "LNz-LN2" Total 12 projection(s) ok Testing NML export Exporting to ./m2.nml ok Importing into new model from ./m2.nml Model "FAFA2": Merging topology from ./m2.nml 1 instance(s) of type "HH" in population "LN1" 1 instance(s) of type "HH" in population "PN" 1 instance(s) of type "HH" in population "LNz" 1 instance(s) of type "HH" in population "PNi" 1 instance(s) of type "DotPoisson" in population "ORNb" 1 instance(s) of type "HH" in population "LN2" 1 instance(s) of type "DotPoisson" in population "ORNa" Total 7 population(s) 1 connection(s) of type "AB_pp" in projection "LNz-LN1" 1 connection(s) of type "AB_pp" in projection "LNz-PNi" 1 connection(s) of type "AB_pp" in projection "LNz-LN2" 1 connection(s) of type "AB_pp" in projection "LN2-LNz" 1 connection(s) of type "AB_pp" in projection "LN2-LN1" 1 connection(s) of type "AB_Mx_pp" in projection "ORNb-LNz" 1 connection(s) of type "AB_Mx_pp" in projection "ORNb-LN2" 1 connection(s) of type "AB_Mx_pp" in projection "ORNa-LNz" 1 connection(s) of type "AB_Mx_pp" in projection "ORNa-LN1" 1 connection(s) of type "AB_pp" in projection "LN1-LNz" 1 connection(s) of type "AB_pp" in projection "LN1-LN2" 1 connection(s) of type "AB_pp" in projection "PNi-PN" Total 12 projection(s) ok Comparing old and new models ok ok Models are pretty much the same ok Host parmeters:  verbosely: "3"  integration_dt_min: "1e-05"  integration_dt_max: "1e-05"  integration_dt_cap: "1e-05"  listen_dt: "1"  listen_mode: "1+d-b-"  sxf_start_delay: "0"  sxf_period: "0"  sdf_sigma: "0" Delete nonexistent model ok (delete_model(): No model named fafa moo) Get units matching "L.*" ok There are 6 unit(s) matching "L.*"  label class family species has_sources is_altered ---------------------------------------------------------------------------------------  LN1.0 Neuron HH HH no yes   LNz.0 Neuron HH HH no yes   LN2.0 Neuron HH HH no yes   LNz.0:3 Synapse AB AB_pp no yes   LN2.0:2 Synapse AB AB_pp no yes   LN1.0:2 Synapse AB AB_pp no yes  Advance 10 sec @10000.4msec (+10000.0 in 23954 cycles in 1.61 sec CPU time: avg 417 µs/cyc, ratio to CPU time 6.2) ok Get parameter ok Set new value ok Get again to check ok Revert to stock ok ok .. changed gNa of LNz.0 from 7.15 to 14.3, then reset (2 affected) to 7.15  Modify parameter in bulk: ok .. changed gsyn of synapse connecting LNz.0 to LN1.0, to 4.2  Describe Model "FAFA": 13 units total (7 Neurons, 6 Synapses): 11 hosted, 2 standalone 0 discrete dt-bound 0 Listening units 0 Spikelogging neurons 0 Units being tuned continuously 0 Units being tuned periodically 2 Spontaneously firing neurons 2 Multiplexing synapses 26 vars on integration vector Unit types in the model: ===== Neurons: --- HH: Hodgkin-Huxley by Traub and Miles (1991) Parameters: --- gNa 7.15 Na conductance, μS/cm² ENa 50. Na equi potential, mV gK 1.43 K conductance, μS/cm² EK -95. K equi potential, mV gl .0267 Leak conductance, μS/cm² El -63.563 Leak equi potential, mV Cmem .143 Membrane specific capacitance, μF/cm² Idc 0 Externally applied DC, nA Variables: --- E = -63.301839 Membrane potential, mV --- DotPoisson: Duration-less spike Poisson oscillator Parameters: --- lambda .02 Rate λ, 1/msec Vrst -60. Resting potential, mV Vfir 20. Potential when firing, mV Variables: --- E = -60. Membrane potential, mV nspk = 0 Spikes recently fired ===== Synapses: --- AB_pp: Alpha-Beta synapse (Destexhe, Mainen, Sejnowsky, 1994) Parameters: --- parameters: Esyn = 0 Reversal potential Esyn, mV Epre = -20. Presyn threshold potential Epre, mV alpha = .5 Rise rate α, 1/msec beta = .05 Decay rate β, 1/msec trel = 5. Time of transmitter release, msec Variables: --- S = 0 Amount of neurotransmitter released S --- AB_Mx_pp: Multiplexing Alpha-Beta synapse for use with durationless units as source (phasic->phasic) Parameters: --- parameters: Esyn = 0 Reversal potential Esyn, mV Epre = -20. Presyn threshold potential Epre, mV alpha = .277852 Rise rate α, 1/msec beta = .05 Decay rate β, 1/msec trel = 5. Time of transmitter release, msec Variables: --- S = .443627 Amount of neurotransmitter released S Model time: 10000.4 msec Integrator dt_min: 1e-05 msec, dt_max: 0.5 msec Logging at: 1 msec ok Advance, check state variables @11000.6msec (+1000.0 in 2385 cycles in 0.16 sec CPU time: avg 418 µs/cyc, ratio to CPU time 68) -63.301838550549; 0.020799229704972; 0.99375010742722; 0.04943507666945 @12000.7msec (+1000.0 in 2390 cycles in 0.17 sec CPU time: avg 418 µs/cyc, ratio to CPU time 72) -63.30183854998; 0.020799228863956; 0.99375010742724; 0.049435076669175 @13000.8msec (+1000.0 in 2388 cycles in 0.16 sec CPU time: avg 418 µs/cyc, ratio to CPU time 80) -63.30183854998; 0.020799228863939; 0.99375010742724; 0.049435076669175 @14000.9msec (+1000.0 in 2393 cycles in 0.16 sec CPU time: avg 418 µs/cyc, ratio to CPU time 87) -63.301838549966; 0.02079922884355; 0.99375010742724; 0.049435076669168 @15001.0msec (+1000.0 in 2387 cycles in 0.16 sec CPU time: avg 418 µs/cyc, ratio to CPU time 95) -63.30183855121; 0.020799230681861; 0.99375010742719; 0.049435076669771 @16001.2msec (+1000.0 in 2388 cycles in 0.16 sec CPU time: avg 418 µs/cyc, ratio to CPU time 1e+02) -63.301838549966; 0.02079922884355; 0.99375010742724; 0.049435076669168 Putout ok .. deleted unit ORNa.0:2 Decimate ok .. 1 units gone, 11 remaining Delete model ok Model FAFA deleted Drop context ok Test passed make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/cnrun-2.1.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' Making install in src make[2]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src' Making install in libstilton make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/libstilton' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/libstilton' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libstilton' /usr/bin/install -c -m 644 alg.hh containers.hh lang.hh misc.hh string.hh '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libstilton' make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/libstilton' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/libstilton' Making install in libcnrun make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/libcnrun' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/libcnrun' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libcnrun.la '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcnrun.so.2.0.0 /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/libcnrun.so.2.0.0 libtool: install: (cd /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libcnrun.so.2.0.0 libcnrun.so.2 || { rm -f libcnrun.so.2 && ln -s libcnrun.so.2.0.0 libcnrun.so.2; }; }) libtool: install: (cd /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libcnrun.so.2.0.0 libcnrun.so || { rm -f libcnrun.so && ln -s libcnrun.so.2.0.0 libcnrun.so; }; }) libtool: install: /usr/bin/install -c .libs/libcnrun.lai /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/libcnrun.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libcnrun/integrator' /usr/bin/install -c -m 644 integrator/base.hh integrator/rk65.hh '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libcnrun/integrator' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libcnrun/model' /usr/bin/install -c -m 644 model/forward-decls.hh model/sources.hh model/model.hh '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libcnrun/model' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libcnrun/units' /usr/bin/install -c -m 644 units/forward-decls.hh units/base-neuron.hh units/base-synapse.hh units/base-unit.hh units/hosted-attr.hh units/hosted-neurons.hh units/hosted-synapses.hh units/mx-attr.hh units/standalone-attr.hh units/standalone-neurons.hh units/standalone-synapses.hh units/types.hh '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/include/libcnrun/units' make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/libcnrun' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/libcnrun' Making install in lua-cnrun make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/cnrun' /bin/bash ../../libtool --mode=install /usr/bin/install -c libcnrun-lua.la '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/cnrun' libtool: warning: relinking 'libcnrun-lua.la' libtool: install: (cd /build/reproducible-path/cnrun-2.1.0/src/lua-cnrun; /bin/bash "/build/reproducible-path/cnrun-2.1.0/libtool" --tag CXX --mode=relink g++ -Wall -std=c++0x -fno-rtti -I../.. -I../../src -I/usr/include/libxml2 -fopenmp -DHAVE_CONFIG_H -I/usr/include/lua5.2 -g -O2 -ffile-prefix-map=/build/reproducible-path/cnrun-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -shared -avoid-version -module -Wl,-z,relro -o libcnrun-lua.la -rpath /usr/lib/i386-linux-gnu/cnrun commands.lo ../libcnrun/libcnrun.la -lgsl -lgslcblas -lm -lxml2 -llua5.2 -inst-prefix-dir /build/reproducible-path/cnrun-2.1.0/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/13/crtbeginS.o .libs/commands.o -L/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lcnrun -lgsl -lgslcblas -lxml2 -llua5.2 -L/usr/lib/gcc/i686-linux-gnu/13 -L/usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/13/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/13/crtendS.o /usr/lib/gcc/i686-linux-gnu/13/../../../i386-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcnrun-lua.so -o .libs/libcnrun-lua.so libtool: install: /usr/bin/install -c .libs/libcnrun-lua.soT /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/cnrun/libcnrun-lua.so libtool: install: /usr/bin/install -c .libs/libcnrun-lua.lai /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/cnrun/libcnrun-lua.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu/cnrun' make install-exec-hook make[5]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' /usr/bin/mkdir -p /build/reproducible-path/cnrun-2.1.0/debian/tmp//usr/lib/lua/5.2 mv /build/reproducible-path/cnrun-2.1.0/debian/tmp//usr/lib/i386-linux-gnu/cnrun/libcnrun-lua.so \ /build/reproducible-path/cnrun-2.1.0/debian/tmp//usr/lib/lua/5.2/cnrun.so rm -rf /build/reproducible-path/cnrun-2.1.0/debian/tmp//usr/lib/i386-linux-gnu/cnrun make[5]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/lua-cnrun' Making install in tools make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/tools' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src/tools' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c spike2sdf hh-latency-estimator '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c spike2sdf /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/bin/spike2sdf libtool: warning: '../libcnrun/libcnrun.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/hh-latency-estimator /build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/bin/hh-latency-estimator make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/tools' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src/tools' make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src' make install-exec-hook make[5]: Entering directory '/build/reproducible-path/cnrun-2.1.0/src' rm -f "/build/reproducible-path/cnrun-2.1.0/debian/tmp//usr/lib/i386-linux-gnu/cnrun/lib*/*.la" make[5]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src' make[2]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/src' Making install in doc make[2]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc' Making install in lua-api make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc/lua-api' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc/lua-api' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/info' /usr/bin/install -c -m 644 ./cnrun-lua-api.info '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/info' make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc/lua-api' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc/lua-api' make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc' make[4]: Entering directory '/build/reproducible-path/cnrun-2.1.0/doc' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/doc/lua-cnrun' /usr/bin/install -c -m 644 README '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/doc/lua-cnrun' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/doc/lua-cnrun/examples' /usr/bin/install -c -m 644 examples/example1.lua examples/m.nml '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/doc/lua-cnrun/examples' make[4]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc' make[2]: Leaving directory '/build/reproducible-path/cnrun-2.1.0/doc' make[2]: Entering directory '/build/reproducible-path/cnrun-2.1.0' make[3]: Entering directory '/build/reproducible-path/cnrun-2.1.0' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 man/spike2sdf.1 man/hh-latency-estimator.1 '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libcnrun.pc '/build/reproducible-path/cnrun-2.1.0/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' make[2]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_installinfo dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' dh_missing --list-missing dh_missing: warning: usr/lib/i386-linux-gnu/libcnrun.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/lua-cnrun/README exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/lua-cnrun/examples/m.nml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/info/cnrun-lua-api.info exists in debian/tmp but is not installed to anywhere (related file: "doc/lua-api/cnrun-lua-api.info") dh_missing: warning: usr/share/man/man1/hh-latency-estimator.1 exists in debian/tmp but is not installed to anywhere (related file: "man/hh-latency-estimator.1") dh_missing: warning: usr/share/man/man1/spike2sdf.1 exists in debian/tmp but is not installed to anywhere (related file: "man/spike2sdf.1") While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * doc/lua-api/cnrun-lua-api.info with: * usr/share/info/cnrun-lua-api.info in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_install: cnrun-tools (2), libcnrun2 (2), libcnrun2-dev (10), lua-cnrun (2) * dh_installdocs: cnrun-tools (0), libcnrun2 (0), libcnrun2-dev (0), lua-cnrun (0) * dh_installinfo: cnrun-tools (0), libcnrun2 (0), libcnrun2-dev (0), lua-cnrun (1) * dh_installman: cnrun-tools (2), libcnrun2 (0), libcnrun2-dev (0), lua-cnrun (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.md.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "i386-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' dh_makeshlibs -plibcnrun2 -V -- -t -c1 -q -v2.0.0 make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/cnrun-2.1.0' dh_shlibdeps -L libcnrun2-dev make[1]: Leaving directory '/build/reproducible-path/cnrun-2.1.0' dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package lua-cnrun: substitution variable ${shlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package lua-cnrun: substitution variable ${shlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libcnrun2' in '../libcnrun2_2.1.0-3_i386.deb'. dpkg-deb: building package 'libcnrun2-dev' in '../libcnrun2-dev_2.1.0-3_i386.deb'. dpkg-deb: building package 'cnrun-tools-dbgsym' in '../cnrun-tools-dbgsym_2.1.0-3_i386.deb'. dpkg-deb: building package 'lua-cnrun-dbgsym' in '../lua-cnrun-dbgsym_2.1.0-3_i386.deb'. dpkg-deb: building package 'lua-cnrun' in '../lua-cnrun_2.1.0-3_i386.deb'. dpkg-deb: building package 'cnrun-tools' in '../cnrun-tools_2.1.0-3_i386.deb'. dpkg-deb: building package 'libcnrun2-dbgsym' in '../libcnrun2-dbgsym_2.1.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../cnrun_2.1.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../cnrun_2.1.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25969 and its subdirectories I: Current time: Wed Apr 3 10:06:59 -12 2024 I: pbuilder-time-stamp: 1712182019 Wed Apr 3 22:07:00 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Wed Apr 3 22:07:00 UTC 2024 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Wed Apr 3 22:08:07 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. Wed Apr 3 22:08:08 UTC 2024 I: cnrun_2.1.0-3_i386.changes: Format: 1.8 Date: Wed, 08 Dec 2021 19:09:14 +0100 Source: cnrun Binary: cnrun-tools cnrun-tools-dbgsym libcnrun2 libcnrun2-dbgsym libcnrun2-dev lua-cnrun lua-cnrun-dbgsym Architecture: i386 Version: 2.1.0-3 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: cnrun-tools - NeuroML-capable neuronal network simulator (tools) libcnrun2 - NeuroML-capable neuronal network simulator (shared lib) libcnrun2-dev - NeuroML-capable neuronal network simulator (development files) lua-cnrun - NeuroML-capable neuronal network simulator (Lua package) Changes: cnrun (2.1.0-3) experimental; urgency=medium . * Team upload. * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Point Vcs fields to salsa.debian.org (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Fix day-of-week for changelog entry 1.1.13-1. * watch file standard 4 (routine-update) * dh_missing --list-missing Checksums-Sha1: b4c225f809ed7ade6e2fe533e8dd5d2ed9d9c5e4 107240 cnrun-tools-dbgsym_2.1.0-3_i386.deb 6081fec6475411eee9b6f33a61fc4f638e28ce32 22200 cnrun-tools_2.1.0-3_i386.deb e2768d688470b6ecac9153c85b3a2eb3845e463d 7350 cnrun_2.1.0-3_i386.buildinfo 02aa331db7da60b07a3c0d00055245cc784542da 1109168 libcnrun2-dbgsym_2.1.0-3_i386.deb 7e01a767ad67ec671f6f13bf22829089245cfbe9 24904 libcnrun2-dev_2.1.0-3_i386.deb 9cabc45ee90b873d63fecabb5d6801d2e28ce79b 95852 libcnrun2_2.1.0-3_i386.deb 7db7e69686ed99dad5eb1fda6118e8e10922bfb0 451964 lua-cnrun-dbgsym_2.1.0-3_i386.deb 492b224009ee1207f7e3dba3440b7de545e40f6b 48320 lua-cnrun_2.1.0-3_i386.deb Checksums-Sha256: a4a09d840cc7637c44f9951ce7aec3ecd2ae05e6d7a1156a1323bc53f6d709a0 107240 cnrun-tools-dbgsym_2.1.0-3_i386.deb 50ab458b17f1559197bca9fcf0a43a91bce66e3939e866cb1f302ecfd46ad1a9 22200 cnrun-tools_2.1.0-3_i386.deb bd41929067c86bbb968ea0ffb5d282cc5d700b135711b9cc55b63d018d128ef3 7350 cnrun_2.1.0-3_i386.buildinfo ba544e48cdf3b025e29438f642b7839b57e988e191e6c8ff17cb25557513aae4 1109168 libcnrun2-dbgsym_2.1.0-3_i386.deb bd36339ecfe969dbc13ab99ff5937136c6c1bd8417681eec84ebf4af74450794 24904 libcnrun2-dev_2.1.0-3_i386.deb e7a1740cc3cd68ceb0477912793d4ef6a3403fda150d9fb88f20691936da6f24 95852 libcnrun2_2.1.0-3_i386.deb 6fdf71fdfe92fd1176dcceee8a0eb7ef648d2e3e15c29583ec05d91e67ab7597 451964 lua-cnrun-dbgsym_2.1.0-3_i386.deb 576e0c0c880657e4ea60f24727ac6770dacec1d01c13f8805e9f19cff996fedc 48320 lua-cnrun_2.1.0-3_i386.deb Files: c8ef313a5ecedd77962f4f4fd7107526 107240 debug optional cnrun-tools-dbgsym_2.1.0-3_i386.deb e40a45fb45ddeedd88a16abbe05c182a 22200 science optional cnrun-tools_2.1.0-3_i386.deb 9a4a2411fe99e9c7220b2c69256d8134 7350 science optional cnrun_2.1.0-3_i386.buildinfo 38d4a0f83cd9d11d379a0464836e58dd 1109168 debug optional libcnrun2-dbgsym_2.1.0-3_i386.deb 8c6faa103be2a487ebbdc9fda5d01fb2 24904 libdevel optional libcnrun2-dev_2.1.0-3_i386.deb 6a3d6ebab5fc07ce8fc18ef971e6d4c3 95852 science optional libcnrun2_2.1.0-3_i386.deb a5c888d6957adabc30acf5a8b788f8c9 451964 debug optional lua-cnrun-dbgsym_2.1.0-3_i386.deb 9603d7df57144d96dc25d076841e2751 48320 science optional lua-cnrun_2.1.0-3_i386.deb Wed Apr 3 22:08:08 UTC 2024 I: diffoscope 262 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_1-20930.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.O8XQ1J2j/cnrun_2.1.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.O8XQ1J2j/cnrun_2.1.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.O8XQ1J2j/cnrun_2.1.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.O8XQ1J2j/b1/cnrun_2.1.0-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.O8XQ1J2j/b2/cnrun_2.1.0-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.383s) 0.383s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.040s) 0.040s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 717ms CPU time consumed: 718ms Wed Apr 3 22:08:09 UTC 2024 I: diffoscope 262 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 3 22:08:09 UTC 2024 I: cnrun from experimental built successfully and reproducibly on i386. Wed Apr 3 22:08:10 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Apr 3 22:08:10 UTC 2024 I: Submitting 12K b1/cnrun_2.1.0-3_i386.buildinfo.asc Wed Apr 3 22:08:12 UTC 2024 I: Submitting 12K b2/cnrun_2.1.0-3_i386.buildinfo.asc Wed Apr 3 22:08:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 3 22:08:14 UTC 2024 I: Done submitting .buildinfo files. Wed Apr 3 22:08:14 UTC 2024 I: Removing signed cnrun_2.1.0-3_i386.buildinfo.asc files: removed './b1/cnrun_2.1.0-3_i386.buildinfo.asc' removed './b2/cnrun_2.1.0-3_i386.buildinfo.asc'