Mon May 13 21:15:41 UTC 2024 I: starting to build freebayes/experimental/i386 on jenkins on '2024-05-13 21:15' Mon May 13 21:15:41 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/11473/console.log Mon May 13 21:15:41 UTC 2024 I: Downloading source for experimental/freebayes=1.3.7-1~exp --2024-05-13 21:15:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/freebayes/freebayes_1.3.7-1%7eexp.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2248 (2.2K) [text/prs.lines.tag] Saving to: ‘freebayes_1.3.7-1~exp.dsc’ 0K .. 100% 245M=0s 2024-05-13 21:15:41 (245 MB/s) - ‘freebayes_1.3.7-1~exp.dsc’ saved [2248/2248] Mon May 13 21:15:41 UTC 2024 I: freebayes_1.3.7-1~exp.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freebayes Binary: freebayes Architecture: any Version: 1.3.7-1~exp Maintainer: Debian Med Packaging Team Uploaders: Brad Chapman , Andreas Tille Homepage: https://github.com/ekg/freebayes Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/freebayes Vcs-Git: https://salsa.debian.org/med-team/freebayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel , libvcflib-tools , debhelper Package-List: freebayes deb science optional arch=any Checksums-Sha1: aa5e76b874f5daa90102152d542fa30f5bac701f 2901909 freebayes_1.3.7.orig.tar.gz 8aaefbb3a7c49bb427a55d0d7467de8375902b4f 11520 freebayes_1.3.7-1~exp.debian.tar.xz Checksums-Sha256: 73de20987bfad317099e5bb2f651073351906b9fb1392d704332f401fbfbb5c6 2901909 freebayes_1.3.7.orig.tar.gz 0f519dcc9bf9719da911c72de41ab570fd90b7beb38055300fe40707e0d7fc6b 11520 freebayes_1.3.7-1~exp.debian.tar.xz Files: 83a9eaef72b98e3c03c287ec73c69687 2901909 freebayes_1.3.7.orig.tar.gz 23ee4258177f9ae2036b3c3933b3a55e 11520 freebayes_1.3.7-1~exp.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmQJs5MRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFiqA//Yp+HF/XQCHmX6Hm8esMsdJtxdxs3QVH3 xqzdn9obKJIhXQa2i6nYjwnZsNZndSocGHMPJWjc9kmNlmc8wNjOyTUXyafkOaRC AUgeixXYmLslBSZPdhVmGDcMrDRucup1N6xMrWMoi5IB6xyzVEmQudHP6XVteEQI 6EoqpF8M4gzpMBnMnRqLXTxsMBAqPxq9j/VvI3xMxe4BpkSXK19BY7h43RRbeSpd TSku4BKih72JHZMfipg21tRxVA3YwxL8Eempe3R0Gu2riWNz1hgETim2BQaSQf55 313bdaclHgZBOSWSiPYcQpZs3sXE1lrgLeX7dlGSPRAXYO7JKI0w05Z1vVuoyeAO mPCpQVyZzdagDlQtIGYHEo7ZB5IShgs7H06xNjcb+W2s3m+dLa4G61YpDlTTNyfR x8x7sw56LF60YfP6vQp0GG41UwxchNBPbkaGBsuqv0pBIH2FcM2AJbv5/Jk/6f/c sHVrUd+9E4uqRKzoDNyOyQD/Vyl5hKQkyJuQe9jtHoAEnVlg7d1NYdEZx2sd/3LY clLH9xfpWHL3/GShVDi5RiQgwN3zvjBIl6F4CQZK9DzqJ3pEhrxINQ9tGIUKXw4R ctlG8BMeEicv1osYPHBIqjM1Hd1cZwfAQrou+YIVWbdjVmEnVq44HoZsftIkKbfY CLUzJtN1zec= =kuHY -----END PGP SIGNATURE----- Mon May 13 21:15:41 UTC 2024 I: Checking whether the package is not for us Mon May 13 21:15:41 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Mon May 13 21:15:41 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Mon May 13 21:15:58 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 15 15:38:42 -12 2025 I: pbuilder-time-stamp: 1750045122 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [freebayes_1.3.7-1~exp.dsc] I: copying [./freebayes_1.3.7.orig.tar.gz] I: copying [./freebayes_1.3.7-1~exp.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Mar 9 10:23:15 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./freebayes_1.3.7-1~exp.dsc: no acceptable signature found dpkg-source: info: extracting freebayes in freebayes-1.3.7 dpkg-source: info: unpacking freebayes_1.3.7.orig.tar.gz dpkg-source: info: unpacking freebayes_1.3.7-1~exp.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/49188/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='455021dc3b3f47a0acb3e5423acfecf1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='49188' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Q18Na5WM/pbuilderrc_y3ix --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Q18Na5WM/b1 --logfile b1/build.log freebayes_1.3.7-1~exp.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 15 13:56 /bin -> usr/bin I: user script /srv/workspace/pbuilder/49188/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), meson, ninja-build, pkg-config, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel, libvcflib-tools, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev; however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on libvcflib-dev (>= 1.0.0~rc2+dfsg-3~); however: Package libvcflib-dev is not installed. pbuilder-satisfydepends-dummy depends on libtabixpp-dev; however: Package libtabixpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqlib-dev (>= 1.1.2+dfsg-5); however: Package libseqlib-dev is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on parallel; however: Package parallel is not installed. pbuilder-satisfydepends-dummy depends on libvcflib-tools; however: Package libvcflib-tools is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libbrotli1{a} libbwa-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjsoncpp-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqlib-dev{a} libseqlib2{a} libssh2-1t64{a} libssw-dev{a} libssw0{a} libsub-override-perl{a} libtabixpp-dev{a} libtabixpp0t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} parallel{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bcron ca-certificates cron cronie curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix systemd systemd-cron wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 39.3 MB of archives. After unpacking 138 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libvcflib-dev (>= 1.0.0~rc2+dfsg-3~) which is a virtual package and is not provided by any available package Depends: libvcflib-tools which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libbrotli1{a} libbwa-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjsoncpp-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqlib-dev{a} libseqlib2{a} libssh2-1t64{a} libssw-dev{a} libssw0{a} libsub-override-perl{a} libtabixpp-dev{a} libtabixpp0t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} parallel{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bcron ca-certificates cron cronie curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix systemd systemd-cron wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 39.3 MB of archives. After unpacking 138 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/49188 and its subdirectories Mon May 13 21:15:59 UTC 2024 W: No second build log, what happened? Mon May 13 21:15:59 UTC 2024 W: Downloading the build dependencies failed Mon May 13 21:15:59 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon May 13 21:15:59 UTC 2024 W: Network problems are automatically rescheduled after some hours.