Tue Apr 30 18:24:58 UTC 2024 I: starting to build baitfisher/trixie/arm64 on jenkins on '2024-04-30 18:24' Tue Apr 30 18:24:58 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/8404/console.log Tue Apr 30 18:24:58 UTC 2024 I: Downloading source for trixie/baitfisher=1.2.7+git20211020.de26d5c+dfsg-1 --2024-04-30 18:24:58-- http://deb.debian.org/debian/pool/main/b/baitfisher/baitfisher_1.2.7%2bgit20211020.de26d5c%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2207 (2.2K) [text/prs.lines.tag] Saving to: ‘baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc’ 0K .. 100% 228M=0s 2024-04-30 18:24:58 (228 MB/s) - ‘baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc’ saved [2207/2207] Tue Apr 30 18:24:58 UTC 2024 I: baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: baitfisher Binary: baitfisher Architecture: any Version: 1.2.7+git20211020.de26d5c+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/cmayer/BaitFisher-package Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/baitfisher Vcs-Git: https://salsa.debian.org/med-team/baitfisher.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libtclap-dev, debhelper Package-List: baitfisher deb science optional arch=any Checksums-Sha1: f0cae180075c9828b1be29d86fe0ccdf52477e84 3454988 baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz dd97ea2367b2a5b4180f2a7befd665d5a8c39f04 4828 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz Checksums-Sha256: 18173901d19d48a42d2f73d43f20fcbe7e9a7bc7be0d085cf396b9e06dae8103 3454988 baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz 49509da2d04fab1652eefface87d35909767be86e14f5c7911a56147d5228e4b 4828 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz Files: ea5113239392acc66501bb398a69a45d 3454988 baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz 5b8c24f27d1c2cee82497f185822079c 4828 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHjyAMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFdvA//Req8A8j+tQvY3xW+fGtZFJ4POl6V730b zrUZocHnRS304pI9ITFbNU1H1QOGuNt2BiiY98ZiTdH2r8SD2B/MYR1tzbRut38D O4UB/fVROljYebNL6wgC+UlMOHNT3zvL4gxJ2434ppJ50aZz6mYhS3mhXsn0tZ3W hHLzU/y4xpxSP5JXRuICrrblfqBr/a3Fcm1v7RMoDJW8wvLo+HV0N3RDsfT678ca gE54I/OqlcElctL4xKOpamvirHfZgPINyti19v61G/nbqvCITvB3wmmBvPwPkqIb t8m0yIqC5douWBdscWBi0+sz10Cuvo/Y3MLc/0nECz4qKBjiy9wZH9S90GtZuc/U FZSaQRC7AQYfBpXt9+iuX//qDGeaTWQ8v4PFH3alE2Y0cOZBmIwq60hC7Ae+nJek TuFAF5bB9Gwr9rT0Ly9ebXeou0zrCSd8eIRtMbG5l8oRiq3mOeqajU0ag9xKg5n1 mVGOOoGxjdTU8ClwKI1GOihbun2ZXAyDl5ajuniyg/lYwXd+VE7DPsRHs0loL3xm I/7sZl3ZOzgABveawxjLGLdYdMcSH/dmFbZr+vgMLCjfNWABZBqBnLouvFT3cjHZ z8SYHji6AyXRp51h2sdVPxJXIz4m+tKUBlTkB5ZEOwT5gEWOdizO8kNwfJjKhJhU II8PRlSY/KI= =WH+G -----END PGP SIGNATURE----- Tue Apr 30 18:24:58 UTC 2024 I: Checking whether the package is not for us Tue Apr 30 18:24:58 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Tue Apr 30 18:24:58 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Tue Apr 30 18:25:39 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 2 12:48:00 -12 2025 I: pbuilder-time-stamp: 1748911680 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc] I: copying [./baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz] I: copying [./baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 16 07:23:47 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting baitfisher in baitfisher-1.2.7+git20211020.de26d5c+dfsg dpkg-source: info: unpacking baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz dpkg-source: info: unpacking baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_example.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/67853/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='b26c22158c0e4da7a7d36864e46d0420' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='67853' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UQZmadz0/pbuilderrc_HXFD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UQZmadz0/b1 --logfile b1/build.log baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 24 13:38 /bin -> usr/bin I: user script /srv/workspace/pbuilder/67853/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, libtclap-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19941 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtclap-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 22.2 MB of archives. After unpacking 91.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-6+b1 [15.0 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] Fetched 22.2 MB in 0s (98.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19941 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-6+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-3+b1_arm64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.39.3-6_arm64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.0-3_arm64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package help2man. Preparing to unpack .../31-help2man_1.49.3_arm64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libtclap-dev. Preparing to unpack .../32-libtclap-dev_1.2.5-1+b1_arm64.deb ... Unpacking libtclap-dev (1.2.5-1+b1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_source.changes dpkg-buildpackage: info: source package baitfisher dpkg-buildpackage: info: source version 1.2.7+git20211020.de26d5c+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' rm -f *.o rm -f BaitFisher-v1.2.8 rm -f BaitFilter-v1.0.6 make[1]: Leaving directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c bait-fisher-helper.cpp -o bait-fisher-helper.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c bait-fisher.cpp -o bait-fisher.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c Csequence_cluster_and_center_sequence.cpp -o Csequence_cluster_and_center_sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c mydir-unix.cpp -o mydir-unix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c bait-filter.cpp -o bait-filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c global-types-and-parameters.cpp -o global-types-and-parameters.o In file included from bait-fisher-helper.cpp:31: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ In file included from CSequence_Mol2_1.h:50, from GFF-class.h:34, from bait-fisher.cpp:30: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ In file included from CBlastParser.h:47, from CBaitRecord.h:37, from bait-filter.cpp:33: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ In file included from CSequences2.h:42, from bait-fisher-helper.cpp:32: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ In file included from CSeqNameList.h:38, from CBlastParser.h:52: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ In file included from CSequence_Mol2_1.h:50, from CSequences2.h:42, from Csequence_cluster_and_center_sequence.h:44, from Csequence_cluster_and_center_sequence.cpp:27: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ g++ -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -lstdc++ bait-filter.o global-types-and-parameters.o -o BaitFilter-v1.0.6 g++ -I . -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -lstdc++ bait-fisher-helper.o bait-fisher.o Csequence_cluster_and_center_sequence.o mydir-unix.o -o BaitFisher-v1.2.8 make[1]: Leaving directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/baitfisher/ debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' cp BaitFilter-v* debian/baitfisher/usr/bin/BaitFilter cp BaitFisher-v* debian/baitfisher/usr/bin/BaitFisher dh_install for sh in `grep -Rl '#!/usr/bin/bash' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/bash?#!/bin/bash?' ${sh} ; \ done make[1]: Leaving directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' help2man --no-discard-stderr -o BaitFilter.1 ./BaitFilter-v* help2man --no-discard-stderr -o BaitFisher.1 ./BaitFisher-v* dh_installman make[1]: Leaving directory '/build/reproducible-path/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'baitfisher-dbgsym' in '../baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb'. dpkg-deb: building package 'baitfisher' in '../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/67853 and its subdirectories I: Current time: Mon Jun 2 12:48:38 -12 2025 I: pbuilder-time-stamp: 1748911718 Tue Apr 30 18:25:40 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Tue Apr 30 18:25:40 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Tue Apr 30 18:26:30 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Tue Apr 30 18:26:30 UTC 2024 I: baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.changes: Format: 1.8 Date: Sun, 16 Jan 2022 08:18:11 +0100 Source: baitfisher Binary: baitfisher baitfisher-dbgsym Architecture: arm64 Version: 1.2.7+git20211020.de26d5c+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: baitfisher - software package for designing hybrid enrichment probes Changes: baitfisher (1.2.7+git20211020.de26d5c+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: 1feee8e19ecd1e542dd67f5c557e049d96d0a03f 1817560 baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb 0f58f050d08854f9dc08e0d44fcff50c21f8f050 5423 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo 34fb6105908678d336ea01932d7a13e7f7b3b8e0 178368 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb Checksums-Sha256: 08f05b460032d6913fb3911c8b92c8a897aeaeaa90bcee0cb42de78053c4d17c 1817560 baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb 7011c75f470597af8214b30706a188c46bae1bc2e5f2ad509a912e23eab26b37 5423 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo 5e66b7ef84678b7463ec08c013e5b7021d2817f59621782602c76ca3e307cd42 178368 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb Files: 2dab82da834fbc67045b30f35ec84842 1817560 debug optional baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb c5c86df8b51346cc9164845db7e7d2c1 5423 science optional baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo 07e5ca75fb8d36747f18309d7cb67406 178368 science optional baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.deb Tue Apr 30 18:26:31 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_21-8404.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UQZmadz0/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UQZmadz0/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UQZmadz0/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UQZmadz0/b1/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UQZmadz0/b2/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.365s) 0.365s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.036s) 0.036s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 693ms CPU time consumed: 672ms Tue Apr 30 18:26:33 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 30 18:26:33 UTC 2024 I: baitfisher from trixie built successfully and reproducibly on arm64. Tue Apr 30 18:26:34 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 30 18:26:34 UTC 2024 I: Submitting 8.0K b1/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo.asc Tue Apr 30 18:26:35 UTC 2024 I: Submitting 8.0K b2/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo.asc Tue Apr 30 18:26:36 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 30 18:26:36 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 30 18:26:36 UTC 2024 I: Removing signed baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo.asc files: removed './b1/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo.asc' removed './b2/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_arm64.buildinfo.asc'