Sun May 12 06:20:45 UTC 2024 I: starting to build rnahybrid/trixie/arm64 on jenkins on '2024-05-12 06:20' Sun May 12 06:20:45 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_16/10026/console.log Sun May 12 06:20:45 UTC 2024 I: Downloading source for trixie/rnahybrid=2.1.2-8 --2024-05-12 06:20:46-- http://deb.debian.org/debian/pool/main/r/rnahybrid/rnahybrid_2.1.2-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2315 (2.3K) [text/prs.lines.tag] Saving to: ‘rnahybrid_2.1.2-8.dsc’ 0K .. 100% 73.0M=0s 2024-05-12 06:20:46 (73.0 MB/s) - ‘rnahybrid_2.1.2-8.dsc’ saved [2315/2315] Sun May 12 06:20:46 UTC 2024 I: rnahybrid_2.1.2-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: rnahybrid Binary: rnahybrid Architecture: any-amd64 any-i386 arm64 armhf loong64 mips mips64el mipsel ppc64el s390x alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 riscv64 Version: 2.1.2-8 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/rnahybrid Vcs-Git: https://salsa.debian.org/med-team/rnahybrid.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libg2-dev Package-List: rnahybrid deb science optional arch=any-amd64,arm64,armhf,any-i386,loong64,mips,mips64el,mipsel,ppc64el,s390x,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32,riscv64 Checksums-Sha1: a5039de03c2b8d356e5d0c549613846d30934852 181984 rnahybrid_2.1.2.orig.tar.gz 0f3b73b3d6a67a590ec8f4f2041e97c2a85560cd 7184 rnahybrid_2.1.2-8.debian.tar.xz Checksums-Sha256: e2bbbca714441f709732412a1a130e4911e212419af5b09154ddfaf0148d6e96 181984 rnahybrid_2.1.2.orig.tar.gz 2836ef538bd5a320d3560659b6921b9d60ccd30eb072b40ce5e21a26fef06109 7184 rnahybrid_2.1.2-8.debian.tar.xz Files: 240f613f3fcc2f563f38804a54f07c89 181984 rnahybrid_2.1.2.orig.tar.gz dbd67b5622bd86233aff0542a4bb6655 7184 rnahybrid_2.1.2-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWEjUkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE+Gg/+PYDvPIZY8lH5Gfhwf6d3z9OZYeHeWBSA yHQ66cQjeCNQ4xctcUZ6nf09DjUOhJE17YleUHbG2Owm/5ZfUDnTQAtRuy9u+1z8 ar7sZJewDQFOXJr/3xcxjvV4yxhQ/tnk0kqZM7ISE6jpyhsARqZAfMSHFsf+5uai 3NHZUmLuZMyIIzdTGQJdmDAVetN3jpcu62HKS6onBoicUkLX08B/s//M+EUXVvP2 G/IcCakPxBGEtX16a93sgv8Br8jMCUc02YW0kTv57K275HXejs9xPvTqisUUMCpL uRwXYj6hClrPMrPsLb8wpEJNdXtBFSrHivPg1YLKBJkhbHjdwW4fRDu3ADYWEBtT g5EKGQspiDAuop1FiVLF7iYcD+NV7sSiFFwk+FG+PzKZ4v6j30yWqlfFA3Tb9iUp uGlwqpE1rROack+IYAHFWmvNk1Znpaxje0vYoxzn1ihzCUEemlZ9QwqUKWGNMD2D OwZL53jImD6dsM+vQ/tZJJfjknjAvCcEqp0ATXl6pYeJz9c5WjGJS/E0aju5q7df 8x8hCATJtoIIItM9cYgMpEl7AQ+L6Nfb98PcHDgMulf1jWSqOdvNBf24BSeNG6an 4brR317GM9yEQ/QDWtyDb+fgpJujyVsvMl+OWsCwRUZYZ2+iU8GlrmAbO1CCapFS VfpxCvKMwkU= =vB/g -----END PGP SIGNATURE----- Sun May 12 06:20:46 UTC 2024 I: Checking whether the package is not for us Sun May 12 06:20:46 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Sun May 12 06:20:46 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Sun May 12 06:28:38 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 11 18:20:49 -12 2024 I: pbuilder-time-stamp: 1715494849 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [rnahybrid_2.1.2-8.dsc] I: copying [./rnahybrid_2.1.2.orig.tar.gz] I: copying [./rnahybrid_2.1.2-8.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 21 19:08:57 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./rnahybrid_2.1.2-8.dsc: no acceptable signature found dpkg-source: info: extracting rnahybrid in rnahybrid-2.1.2 dpkg-source: info: unpacking rnahybrid_2.1.2.orig.tar.gz dpkg-source: info: unpacking rnahybrid_2.1.2-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fixmanpage.patch dpkg-source: info: applying mayhem_check_if_file_exists.patch dpkg-source: info: applying fix_loop_index.patch dpkg-source: info: applying fix_warnings.patch dpkg-source: info: applying fix-implicit-declaration.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2382449/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ba83c4c27a0a4839bf19a61edbfa6636' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2382449' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mTdtjjKP/pbuilderrc_qM2n --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mTdtjjKP/b1 --logfile b1/build.log rnahybrid_2.1.2-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 9 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2382449/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libg2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libg2-dev; however: Package libg2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libbsd0{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libg2-dev{a} libg20{a} libgav1-1{a} libgd3{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpng16-16t64{a} librav1e0{a} libsharpyuv0{a} libsub-override-perl{a} libsvtav1enc1d1{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 29.7 MB of archives. After unpacking 113 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libaom3 arm64 3.8.2-2 [1528 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libdav1d7 arm64 1.4.1-1 [251 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libgav1-1 arm64 0.19.0-2+b1 [481 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librav1e0 arm64 0.7.1-2 [630 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libsvtav1enc1d1 arm64 1.7.0+dfsg-2+b1 [1083 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libyuv0 arm64 0.0~git202401110.af6ac82-1 [123 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libavif16 arm64 1.0.4-2 [99.4 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libde265-0 arm64 1.0.15-1+b1 [151 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-dav1d arm64 1.17.6-1+b2 [9888 B] Get: 53 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-libde265 arm64 1.17.6-1+b2 [13.0 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libheif1 arm64 1.17.6-1+b2 [247 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libgd3 arm64 2.3.3-9+b3 [114 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libg20 arm64 0.72-12+b2 [38.9 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libg2-dev arm64 0.72-12+b2 [189 kB] Fetched 29.7 MB in 0s (96.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../30-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../31-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../32-fontconfig-config_2.15.0-1.1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libabsl20230802:arm64. Preparing to unpack .../33-libabsl20230802_20230802.1-4_arm64.deb ... Unpacking libabsl20230802:arm64 (20230802.1-4) ... Selecting previously unselected package libaom3:arm64. Preparing to unpack .../34-libaom3_3.8.2-2_arm64.deb ... Unpacking libaom3:arm64 (3.8.2-2) ... Selecting previously unselected package libdav1d7:arm64. Preparing to unpack .../35-libdav1d7_1.4.1-1_arm64.deb ... Unpacking libdav1d7:arm64 (1.4.1-1) ... Selecting previously unselected package libgav1-1:arm64. Preparing to unpack .../36-libgav1-1_0.19.0-2+b1_arm64.deb ... Unpacking libgav1-1:arm64 (0.19.0-2+b1) ... Selecting previously unselected package librav1e0:arm64. Preparing to unpack .../37-librav1e0_0.7.1-2_arm64.deb ... Unpacking librav1e0:arm64 (0.7.1-2) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../38-libsharpyuv0_1.4.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... Selecting previously unselected package libsvtav1enc1d1:arm64. Preparing to unpack .../39-libsvtav1enc1d1_1.7.0+dfsg-2+b1_arm64.deb ... Unpacking libsvtav1enc1d1:arm64 (1.7.0+dfsg-2+b1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../40-libjpeg62-turbo_1%3a2.1.5-3_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3) ... Selecting previously unselected package libyuv0:arm64. Preparing to unpack .../41-libyuv0_0.0~git202401110.af6ac82-1_arm64.deb ... Unpacking libyuv0:arm64 (0.0~git202401110.af6ac82-1) ... Selecting previously unselected package libavif16:arm64. Preparing to unpack .../42-libavif16_1.0.4-2_arm64.deb ... Unpacking libavif16:arm64 (1.0.4-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../43-libbrotli1_1.1.0-2+b3_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../44-libbsd0_0.12.2-1_arm64.deb ... Unpacking libbsd0:arm64 (0.12.2-1) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../45-libde265-0_1.0.15-1+b1_arm64.deb ... Unpacking libde265-0:arm64 (1.0.15-1+b1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../46-libdeflate0_1.20-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.20-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../47-libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../48-libpng16-16t64_1.6.43-5_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../49-libfreetype6_2.13.2+dfsg-1+b4_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../50-libfontconfig1_2.15.0-1.1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1) ... Selecting previously unselected package libheif-plugin-dav1d:arm64. Preparing to unpack .../51-libheif-plugin-dav1d_1.17.6-1+b2_arm64.deb ... Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1+b2) ... Selecting previously unselected package libheif-plugin-libde265:arm64. Preparing to unpack .../52-libheif-plugin-libde265_1.17.6-1+b2_arm64.deb ... Unpacking libheif-plugin-libde265:arm64 (1.17.6-1+b2) ... Selecting previously unselected package libheif1:arm64. Preparing to unpack .../53-libheif1_1.17.6-1+b2_arm64.deb ... Unpacking libheif1:arm64 (1.17.6-1+b2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../54-libjbig0_2.1-6.1+b1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../55-liblerc4_4.0.0+ds-4+b1_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-4+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../56-libwebp7_1.4.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.4.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../57-libtiff6_4.5.1+git230720-4_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-4) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../58-libxau6_1%3a1.0.9-1+b1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1+b1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../59-libxdmcp6_1%3a1.1.2-3+b1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../60-libxcb1_1.15-1_arm64.deb ... Unpacking libxcb1:arm64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../61-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../62-libx11-6_2%3a1.8.7-1+b1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxpm4:arm64. Preparing to unpack .../63-libxpm4_1%3a3.5.17-1+b1_arm64.deb ... Unpacking libxpm4:arm64 (1:3.5.17-1+b1) ... Selecting previously unselected package libgd3:arm64. Preparing to unpack .../64-libgd3_2.3.3-9+b3_arm64.deb ... Unpacking libgd3:arm64 (2.3.3-9+b3) ... Selecting previously unselected package libg20. Preparing to unpack .../65-libg20_0.72-12+b2_arm64.deb ... Unpacking libg20 (0.72-12+b2) ... Selecting previously unselected package libg2-dev. Preparing to unpack .../66-libg2-dev_0.72-12+b2_arm64.deb ... Unpacking libg2-dev (0.72-12+b2) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... Setting up libaom3:arm64 (3.8.2-2) ... Setting up libxau6:arm64 (1:1.0.9-1+b1) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libdeflate0:arm64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libsvtav1enc1d1:arm64 (1.7.0+dfsg-2+b1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up librav1e0:arm64 (0.7.1-2) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:arm64 (1.4.1-1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libabsl20230802:arm64 (20230802.1-4) ... Setting up libde265-0:arm64 (1.0.15-1+b1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up libyuv0:arm64 (0.0~git202401110.af6ac82-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libgav1-1:arm64 (0.19.0-2+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up libavif16:arm64 (1.0.4-2) ... Setting up libxpm4:arm64 (1:3.5.17-1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up libheif-plugin-dav1d:arm64 (1.17.6-1+b2) ... Setting up libheif1:arm64 (1.17.6-1+b2) ... Setting up libgd3:arm64 (2.3.3-9+b3) ... Setting up libheif-plugin-libde265:arm64 (1.17.6-1+b2) ... Setting up libg20 (0.72-12+b2) ... Setting up libg2-dev (0.72-12+b2) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/rnahybrid-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../rnahybrid_2.1.2-8_source.changes dpkg-buildpackage: info: source package rnahybrid dpkg-buildpackage: info: source version 2.1.2-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:8: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.in:8: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:745: AM_CONFIG_HEADER is expanded from... configure.in:8: the top level configure.in:21: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:21: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:21: the top level configure.in:34: warning: AC_OUTPUT should be used without arguments. configure.in:34: You should run autoupdate. autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:12: installing './compile' src/Makefile.am:62: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for log in -lm... yes checking for g2_open_vd in -lg2... yes checking for gdImageLine in -lgd... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for g2.h... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2' make all-recursive make[2]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2' Making all in src make[3]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o rnahybrid.o rnahybrid.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o hybrid_core.o hybrid_core.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o energy.o energy.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o input.o input.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o fasta.o fasta.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o plot.o plot.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o rnacalibrate.o rnacalibrate.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o numerical.o numerical.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o random.o random.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o mt19937-1.o mt19937-1.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o rnaeffective.o rnaeffective.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o RNAhybrid rnahybrid.o hybrid_core.o energy.o input.o fasta.o plot.o -lg2 -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o RNAcalibrate rnacalibrate.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rnahybrid-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o RNAeffective rnaeffective.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm make[3]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2/src' Making all in man make[3]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2/man' make[3]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2' make[3]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2' make[2]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2' make[1]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2' src/RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.064406 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 19 1.831879 0.328939 src/RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.052460 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAhybrid -f 2,7 -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -27.3 kcal/mol p-value: 0.070821 position 1189 target 5' C AU U C 3' CUGUAUA GCCU CUACCUC GAUAUGU UGGA GAUGGAG miRNA 3' UU U U 5' src/RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 8 nan nan src/RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta target: ENSCBRT00000006770.1|ENSCBRG00000005546.1 length: 1449 miRNA : cel-let-7 length: 22 mfe: -28.3 kcal/mol p-value: 0.060792 position 1333 target 5' C GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta 1.000000 0.430413 1.100000 0.276980 1.200000 0.218117 1.300000 0.231629 1.400000 0.373539 1.500000 0.645806 1.600000 0.930950 1.700000 1.213468 1.800000 1.360248 1.900000 2.126442 2.000000 2.712546 Effective number: 1.200000 make[1]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/rnahybrid/ make -j12 install DESTDIR=/build/reproducible-path/rnahybrid-2.1.2/debian/rnahybrid AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2' Making install in src make[2]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2/src' make[3]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/rnahybrid-2.1.2/debian/rnahybrid/usr/bin' /usr/bin/install -c RNAhybrid RNAcalibrate RNAeffective '/build/reproducible-path/rnahybrid-2.1.2/debian/rnahybrid/usr/bin' make[3]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2/src' make[2]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2/src' Making install in man make[2]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2/man' make[3]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/rnahybrid-2.1.2/debian/rnahybrid/usr/share/man/man1' /usr/bin/install -c -m 644 RNAhybrid.1 RNAcalibrate.1 RNAeffective.1 '/build/reproducible-path/rnahybrid-2.1.2/debian/rnahybrid/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2/man' make[2]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2/man' make[2]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2' make[3]: Entering directory '/build/reproducible-path/rnahybrid-2.1.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2' make[2]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2' make[1]: Leaving directory '/build/reproducible-path/rnahybrid-2.1.2' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'rnahybrid' in '../rnahybrid_2.1.2-8_arm64.deb'. dpkg-deb: building package 'rnahybrid-dbgsym' in '../rnahybrid-dbgsym_2.1.2-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../rnahybrid_2.1.2-8_arm64.buildinfo dpkg-genchanges --build=binary -O../rnahybrid_2.1.2-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2382449 and its subdirectories I: Current time: Sat May 11 18:28:37 -12 2024 I: pbuilder-time-stamp: 1715495317 Sun May 12 06:28:39 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Sun May 12 06:28:39 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Sun May 12 06:36:20 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Sun May 12 06:36:21 UTC 2024 I: rnahybrid_2.1.2-8_arm64.changes: Format: 1.8 Date: Thu, 21 Dec 2023 19:49:33 +0100 Source: rnahybrid Binary: rnahybrid rnahybrid-dbgsym Architecture: arm64 Version: 2.1.2-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: rnahybrid - Fast and effective prediction of microRNA/target duplexes Closes: 1058990 Changes: rnahybrid (2.1.2-8) unstable; urgency=medium . * Add build support for loongarch64 Closes: #1058990 Checksums-Sha1: a9f99e31749bee93a44ac464d4f7aa88c1f590ea 211636 rnahybrid-dbgsym_2.1.2-8_arm64.deb 19baeaac79fafd73dbb02ecb2145181d62cc15fe 6181 rnahybrid_2.1.2-8_arm64.buildinfo 8e56d58aa94e6a72330f10d11409234aa9511762 81580 rnahybrid_2.1.2-8_arm64.deb Checksums-Sha256: c63c3c263dbf639db0ad2ef2d7775988c288ba5f1d29350727f2d6fd1c1ecc1c 211636 rnahybrid-dbgsym_2.1.2-8_arm64.deb fafc1dfaed019332d32bc0b45d1c5f334a28851935a51dc29b3371bdb5d41b37 6181 rnahybrid_2.1.2-8_arm64.buildinfo 9bfdc646f10bec059643dcbfd49f6c9b8b6d7ed96d599d2e588381c919e0fd91 81580 rnahybrid_2.1.2-8_arm64.deb Files: 8136460124f8c7556823f79b08e9f2e5 211636 debug optional rnahybrid-dbgsym_2.1.2-8_arm64.deb 43c01e66d29678c59afd0eb25ae1fe8c 6181 science optional rnahybrid_2.1.2-8_arm64.buildinfo c00071d8731e56a678759e9bf701a2d7 81580 science optional rnahybrid_2.1.2-8_arm64.deb Sun May 12 06:36:22 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_16-10026.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.mTdtjjKP/rnahybrid_2.1.2-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.mTdtjjKP/rnahybrid_2.1.2-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.mTdtjjKP/rnahybrid_2.1.2-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.mTdtjjKP/b1/rnahybrid_2.1.2-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.mTdtjjKP/b2/rnahybrid_2.1.2-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.343s) 0.343s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 690ms CPU time consumed: 690ms Sun May 12 06:55:52 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Sun May 12 06:55:52 UTC 2024 I: rnahybrid from trixie built successfully and reproducibly on arm64. Sun May 12 06:55:54 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 12 06:55:54 UTC 2024 I: Submitting 8.0K b1/rnahybrid_2.1.2-8_arm64.buildinfo.asc Sun May 12 06:56:18 UTC 2024 I: Submitting 8.0K b2/rnahybrid_2.1.2-8_arm64.buildinfo.asc Sun May 12 06:56:44 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 12 06:56:44 UTC 2024 I: Done submitting .buildinfo files. Sun May 12 06:56:44 UTC 2024 I: Removing signed rnahybrid_2.1.2-8_arm64.buildinfo.asc files: removed './b1/rnahybrid_2.1.2-8_arm64.buildinfo.asc' removed './b2/rnahybrid_2.1.2-8_arm64.buildinfo.asc'