Mon May 13 22:11:32 UTC 2024 I: starting to build barrnap/trixie/armhf on jenkins on '2024-05-13 22:11' Mon May 13 22:11:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_18/3944/console.log Mon May 13 22:11:32 UTC 2024 I: Downloading source for trixie/barrnap=0.9+dfsg-4 --2024-05-13 22:11:32-- http://deb.debian.org/debian/pool/main/b/barrnap/barrnap_0.9%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2002 (2.0K) [text/prs.lines.tag] Saving to: ‘barrnap_0.9+dfsg-4.dsc’ 0K . 100% 295M=0s 2024-05-13 22:11:32 (295 MB/s) - ‘barrnap_0.9+dfsg-4.dsc’ saved [2002/2002] Mon May 13 22:11:32 UTC 2024 I: barrnap_0.9+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: barrnap Binary: barrnap Architecture: all Version: 0.9+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/barrnap Vcs-Git: https://salsa.debian.org/med-team/barrnap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools Package-List: barrnap deb science optional arch=all Checksums-Sha1: c90352d95316d96f016540d1540ec198ecf3beb2 5783936 barrnap_0.9+dfsg.orig.tar.xz f81f6b438cf54cc5dbf4a2e1a69e6ddb0b311e01 702800 barrnap_0.9+dfsg-4.debian.tar.xz Checksums-Sha256: b780182b0154cf44915279bb57c1207b9b0aeb24e779fcd6de1a2b6779e89cc8 5783936 barrnap_0.9+dfsg.orig.tar.xz a6d6b925c2a6667433cc70b76e59e257b7d2792bbff541b68f03c57ae1f715d4 702800 barrnap_0.9+dfsg-4.debian.tar.xz Files: 944eaecec9c2fe9bdf344f6f33071ea6 5783936 barrnap_0.9+dfsg.orig.tar.xz d2ba201aafebc15283958e23556cb1b8 702800 barrnap_0.9+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUFyCcACgkQPCZ2P2xn 5uJhmhAAjWrsPjrGxxym404LHnL0+iVEXONqACrAt7NuhhmUsXo94ljMx38pLQ8V OBjQ5VoKM14jJOs30Cb2+lBDsz9GzLATNJwJFbbi9ZbYSj21vw7dgsWsR9TxhNYn pfw4ggRFRHFnWa1GmG9+1ULdV3pnQqGZsEd8BEwXvvCtDtQILvP/6xRkFP6r9Mus SaI8SboiNsTkO8NNtI7ZpFnmWffleHeU4n3WXwedesEfToNSmeE0RJrZqlIS0JxW eeSfAS32JHeiQPokGBvO34GAX2ZvvQ8Lg0aZiqyu1VykF5kJE9QRA4KugtFvTfTt AVIP0Ll/FlIErskzXhFsCkvRB6jeERQYR0MxcdB+jknKNNw8j3jF8k3XPrrlGD+d B9qX2ZZQzZSjhXTbzUp7ZcUnu47Qpqx3CVvFx6BnhZ9LMghroSxlbO4JMsdA+Iag SCxc5cTdl0gusXCK7HRICPSa+w56pHgXBpZLtRIQOZPulrkXtvr7BFgHIempbc5B 1Pd8oM3OBZhCeBr2oM/hp5CVDM6Ci3CDn8cSldkIlhd9vBUjrq1O/1CnFlUXvIWs DzRmNZ3GFfkYqwLmFGCQOzZf0XskxV/XkckUuS41YHwpB1787ZlI1/RrJWYQtMvV SWC5hLNCMcecE2iOfB0o0LF/XI/rXM1a0mWdueay5sESP8gUBPo= =ekhv -----END PGP SIGNATURE----- Mon May 13 22:11:32 UTC 2024 I: Checking whether the package is not for us Mon May 13 22:11:32 UTC 2024 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Mon May 13 22:11:32 UTC 2024 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Mon May 13 22:13:58 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 13 10:11:43 -12 2024 I: pbuilder-time-stamp: 1715638303 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [barrnap_0.9+dfsg-4.dsc] I: copying [./barrnap_0.9+dfsg.orig.tar.xz] I: copying [./barrnap_0.9+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Sep 16 15:22:15 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./barrnap_0.9+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting barrnap in barrnap-0.9+dfsg dpkg-source: info: unpacking barrnap_0.9+dfsg.orig.tar.xz dpkg-source: info: unpacking barrnap_0.9+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying update_dbs dpkg-source: info: applying use_debian_dirs I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12784/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='29552d81481e4983bb4da023d02164f9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12784' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cb6XbGPB/pbuilderrc_pIiD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cb6XbGPB/b1 --logfile b1/build.log barrnap_0.9+dfsg-4.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 11:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12784/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19445 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on hmmer; however: Package hmmer is not installed. pbuilder-satisfydepends-dummy depends on lua5.1; however: Package lua5.1 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 70.8 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: hmmer which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 70.8 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12784 and its subdirectories Mon May 13 22:14:02 UTC 2024 W: No second build log, what happened? Mon May 13 22:14:02 UTC 2024 W: Downloading the build dependencies failed Mon May 13 22:14:02 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon May 13 22:14:02 UTC 2024 W: Network problems are automatically rescheduled after some hours.