Tue May 14 05:38:25 UTC 2024 I: starting to build parallel-fastq-dump/trixie/armhf on jenkins on '2024-05-14 05:38' Tue May 14 05:38:25 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_27/4873/console.log Tue May 14 05:38:25 UTC 2024 I: Downloading source for trixie/parallel-fastq-dump=0.6.7-3 --2024-05-14 05:38:25-- http://deb.debian.org/debian/pool/main/p/parallel-fastq-dump/parallel-fastq-dump_0.6.7-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2141 (2.1K) [text/prs.lines.tag] Saving to: ‘parallel-fastq-dump_0.6.7-3.dsc’ 0K .. 100% 309M=0s 2024-05-14 05:38:25 (309 MB/s) - ‘parallel-fastq-dump_0.6.7-3.dsc’ saved [2141/2141] Tue May 14 05:38:25 UTC 2024 I: parallel-fastq-dump_0.6.7-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parallel-fastq-dump Binary: parallel-fastq-dump Architecture: any Version: 0.6.7-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvalieris/parallel-fastq-dump Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/parallel-fastq-dump Vcs-Git: https://salsa.debian.org/med-team/parallel-fastq-dump.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit Package-List: parallel-fastq-dump deb science optional arch=any Checksums-Sha1: 2f84683b686881fe817aa7fbd1a0b2358bfe4508 4208 parallel-fastq-dump_0.6.7.orig.tar.gz f3baa817ee82ca672dda9cd5ad5df4e404b90962 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Checksums-Sha256: cb33ea0ed0b1123c100aee7b9ea60a3fc3fc81a3a46be5237c85ba56380617de 4208 parallel-fastq-dump_0.6.7.orig.tar.gz b9c66d93be3feaf1ae18f9f1b0389c5daa188ff80272b3eb6598f3b6642f3e94 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Files: 2be46eb5b8865bc837bd279d892b29a9 4208 parallel-fastq-dump_0.6.7.orig.tar.gz e2a2e4479401189dde4e81f8792be58d 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmJDUlASHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxqIQQAIeI2pf5pHv7d8I20+x1zpMtxNiPIgqd /ALBNe7PioXeZC3fLnFEyEuE+/R2DndrboxE+fi1sMyOhS3EX8tNV8o5mQhxng7l KJE4xRlYAq+HYPgJ2ApCHU5UXS14Uzrf0PPbgl3vOzexr+qI2Rr0NmJ/38NtjMsM B5kVQ/KqzvVqxQUZ7Ii28j4ELzl/JSiBOdKwvQs+gxBVblDg7/GHy+sWJSH1L19n UBVNgnEoElfPv8SzpvaqwGH7iACT7pCqNEg7V5nP+f+WQVkEB+ZY63F8bJP0p9f2 Yc84J8gc06jzktPG6ia0niYVgVAa7YdtofKm0SG/QWAxSY1sUgJM3g+NzW3vmLZo 5aH6Meq5GzQ1GD/JpNlx8AM2l1wBCYrpY3YKgFSfQEH1Ia6/HZ2yE6xVjrCg8TTU efyTT1L/XGhmaaaHRdOdhdxb3g1YY5eBAO6qsNwG3umChMipJmGyh2i+MKaUesE2 3e7vz0d96o1CHPXj9O4NOHYCf2Wai8i1yXtQcvSpnUhh/YWPEdeDefLaPcAv6v0z M5OLrO2Ai96KYUK6n+Bn81xUXdDKAWSJsleEiJPl5n1thouFyKVq3CWPpf7nim3A x+jo9kQO20rEQALV7JL8nrJZqzkKXvYL5fZBuJfII0tFwe/tszqcO5Xbz0p0xY7X I7NFFxRKMAB2 =V+so -----END PGP SIGNATURE----- Tue May 14 05:38:25 UTC 2024 I: Checking whether the package is not for us Tue May 14 05:38:25 UTC 2024 I: Starting 1st build on remote node virt64z-armhf-rb.debian.net. Tue May 14 05:38:25 UTC 2024 I: Preparing to do remote build '1' on virt64z-armhf-rb.debian.net. Tue May 14 05:39:00 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 13 17:38:31 -12 2024 I: pbuilder-time-stamp: 1715665111 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parallel-fastq-dump_0.6.7-3.dsc] I: copying [./parallel-fastq-dump_0.6.7.orig.tar.gz] I: copying [./parallel-fastq-dump_0.6.7-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Mar 29 18:39:12 2022 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parallel-fastq-dump_0.6.7-3.dsc: no acceptable signature found dpkg-source: info: extracting parallel-fastq-dump in parallel-fastq-dump-0.6.7 dpkg-source: info: unpacking parallel-fastq-dump_0.6.7.orig.tar.gz dpkg-source: info: unpacking parallel-fastq-dump_0.6.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21212/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='09740b1d9a544290ac9de136d5535d6b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='21212' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.osBtZbFw/pbuilderrc_vEUD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.osBtZbFw/b1 --logfile b1/build.log parallel-fastq-dump_0.6.7-3.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/21212/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19445 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 24.8 MB of archives. After unpacking 94.3 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: sra-toolkit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 24.8 MB of archives. After unpacking 94.3 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21212 and its subdirectories Tue May 14 05:39:03 UTC 2024 W: No second build log, what happened? Tue May 14 05:39:03 UTC 2024 W: Downloading the build dependencies failed Tue May 14 05:39:03 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Tue May 14 05:39:03 UTC 2024 W: Network problems are automatically rescheduled after some hours.