Wed May 8 11:59:31 UTC 2024 I: starting to build pbbam/trixie/armhf on jenkins on '2024-05-08 11:59' Wed May 8 11:59:31 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_12/4165/console.log Wed May 8 11:59:31 UTC 2024 I: Downloading source for trixie/pbbam=2.4.0+dfsg-1 --2024-05-08 11:59:32-- http://deb.debian.org/debian/pool/main/p/pbbam/pbbam_2.4.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2321 (2.3K) [text/prs.lines.tag] Saving to: ‘pbbam_2.4.0+dfsg-1.dsc’ 0K .. 100% 291M=0s 2024-05-08 11:59:32 (291 MB/s) - ‘pbbam_2.4.0+dfsg-1.dsc’ saved [2321/2321] Wed May 8 11:59:32 UTC 2024 I: pbbam_2.4.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbbam Binary: pbbamtools, libpbbam2.4.0, libpbbam-dev Architecture: any Version: 2.4.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://pbbam.readthedocs.org/en/latest/index.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pbbam Vcs-Git: https://salsa.debian.org/med-team/pbbam.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-exec, d-shlibs, meson, pkg-config, cmake, libboost-dev, zlib1g-dev, libssl-dev, libhts-dev, libpbcopper-dev (>> 2.2.0), python3-cram, libgtest-dev , samtools Package-List: libpbbam-dev deb libdevel optional arch=any libpbbam2.4.0 deb libs optional arch=any pbbamtools deb science optional arch=any Checksums-Sha1: c18a5477be1369d03c515bf59103d3233785d583 7826464 pbbam_2.4.0+dfsg.orig.tar.xz 72dd9934d4f507818c2f0314db588e13d78102c0 8980 pbbam_2.4.0+dfsg-1.debian.tar.xz Checksums-Sha256: e991e5f5470976f2ad0cca93658a273989738ca48cce4f024fd074cc1e8cbe2b 7826464 pbbam_2.4.0+dfsg.orig.tar.xz 598bb22aaaab6c7b2ea2faf7a1a31431c78c223f9464a63e3a90c5a2f5f21f1b 8980 pbbam_2.4.0+dfsg-1.debian.tar.xz Files: 315039ff474e762e609442ca84988512 7826464 pbbam_2.4.0+dfsg.orig.tar.xz 8a3ee5bde31a061b9aa0d9b90769671f 8980 pbbam_2.4.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVL0gQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFqzhAAjj9eYBapnecg3wapHEEL3ZFRf1ZvJRKB Uv3i95KA25Rw4nr8pVn4+rAjTxtxhuA1CIrGVxILsY1dicgN6YtZvwgs+UTActuB HBjGBpuh8yus8gdWmA0KXK4W03LYLAdvp+1GTApWhOa/jDngePdkIc7f/ZbYVdR0 UpPL7OX9xHMbRLWOo8wEj9mioWdK/I6CuKzGA00ffuyvLluopquQ2rDCChdLJLR8 mu4cU/Nnm5EQpHVPw2qz6d4eJngnv6bjEa2AJpte8+WxPYzUFoWy3ojrVGyF2f3R tWwk7j22mHUUkPuueLco3oHMzj7SGOTInf+QdkhRGCqe65+MILpdkgnBj/AaLGuF jLTa/Dv2oX8w7JJP9U1ht5GdGxCb8qMviLZMjeV6n8Xm2M7hnGLVNPR8a3eV+RGB tB3XL+Q1kfpYxLJVkjeSBFun524YH/uAQiaO73diavSraIi9oJXh9Bh7RgLRJmSg EvFLvEWq3g/h1TUlnWsKIzIpuybaX8XC2d8eIc+JWr+OWhBLjPspTVJNrpTgsake qwClK0Mo/8cUK78YCWlfS6m6SYc1JbO0SUH+SweId1r0bTZw+brDJ2mAXTJojCi+ 84ehZMWCdKFlUQLNuJgu1a5oLX1oHDVYtkLkHHTuI0CSsH/O1grQ8WQokYrmoa+B S4tQL20deRo= =OT0g -----END PGP SIGNATURE----- Wed May 8 11:59:32 UTC 2024 I: Checking whether the package is not for us Wed May 8 11:59:32 UTC 2024 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Wed May 8 11:59:32 UTC 2024 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Wed May 8 12:00:16 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 7 23:59:38 -12 2024 I: pbuilder-time-stamp: 1715169578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbbam_2.4.0+dfsg-1.dsc] I: copying [./pbbam_2.4.0+dfsg.orig.tar.xz] I: copying [./pbbam_2.4.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 8 18:23:00 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbbam_2.4.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting pbbam in pbbam-2.4.0+dfsg dpkg-source: info: unpacking pbbam_2.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pbbam_2.4.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_python3-cram.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying results_with_latest_samtools.patch dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20785/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='e6bc5a3f4d1d468e96a0cc988577b93a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20785' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iII82Pua/pbuilderrc_SCiT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iII82Pua/b1 --logfile b1/build.log pbbam_2.4.0+dfsg-1.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 8 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20785/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, d-shlibs, meson, pkg-config, cmake, libboost-dev, zlib1g-dev, libssl-dev, libhts-dev, libpbcopper-dev (>> 2.2.0), python3-cram, libgtest-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbcopper-dev (>> 2.2.0); however: Package libpbcopper-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-cram; however: Package python3-cram is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-cram{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 54.6 MB of archives. After unpacking 325 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libpbcopper-dev (> 2.2.0) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-cram{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 54.6 MB of archives. After unpacking 325 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20785 and its subdirectories Wed May 8 12:00:19 UTC 2024 W: No second build log, what happened? Wed May 8 12:00:19 UTC 2024 W: Downloading the build dependencies failed Wed May 8 12:00:19 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed May 8 12:00:19 UTC 2024 W: Network problems are automatically rescheduled after some hours.