Tue May 14 07:13:28 UTC 2024 I: starting to build pbseqlib/trixie/armhf on jenkins on '2024-05-14 07:13' Tue May 14 07:13:28 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_34/7014/console.log Tue May 14 07:13:28 UTC 2024 I: Downloading source for trixie/pbseqlib=5.3.5+dfsg-6 --2024-05-14 07:13:29-- http://deb.debian.org/debian/pool/main/p/pbseqlib/pbseqlib_5.3.5%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2450 (2.4K) [text/prs.lines.tag] Saving to: ‘pbseqlib_5.3.5+dfsg-6.dsc’ 0K .. 100% 357M=0s 2024-05-14 07:13:29 (357 MB/s) - ‘pbseqlib_5.3.5+dfsg-6.dsc’ saved [2450/2450] Tue May 14 07:13:29 UTC 2024 I: pbseqlib_5.3.5+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbseqlib Binary: libblasr-dev, libblasr5.3.5, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev Architecture: any Version: 5.3.5+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/blasr_libcpp Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest , libgtest-dev , zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev Package-List: libblasr-dev deb libdevel optional arch=any libblasr5.3.5 deb libs optional arch=any libpbdata-dev deb libdevel optional arch=any libpbihdf-dev deb libdevel optional arch=any libpbseq deb science optional arch=any libpbseq-dev deb libdevel optional arch=any Checksums-Sha1: 52e008afcd7a07d4df0a18e2299c8b8e7c480e91 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz 89b7c4e78f918c24e79b106067f0ad1887d9b639 11736 pbseqlib_5.3.5+dfsg-6.debian.tar.xz Checksums-Sha256: 81afecd5d7ccb3cd70ed42cd8afa64876fde4c0deee89e1112c7f3b3d6ee8c49 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz d8492bad067709139926f1fd9c0c0e6b081e5d8c4168104fb7aadb68ba79eb44 11736 pbseqlib_5.3.5+dfsg-6.debian.tar.xz Files: 53cbc19d8c807640dafbd04fcc47f86e 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz d38db4d8c7c892de9d8702f4be2985eb 11736 pbseqlib_5.3.5+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmTlAwEACgkQPCZ2P2xn 5uJMyBAAuhKRJRXQBizUPXMeEtELO2UNqzo0b0uiHzKiXxXXGUhrHp08AJpHoi7U dpx16SD5rt/uyB60NETkkV2H/FnjXT8I26wDbCrZ8Q4fnI96vRUj1++0weBYuimY UgXK2qjuuV4+x/VFVXQ8fC4Oxipa7TPvBev0wjVuBJL5WVllIaB6gmsALX8/CPW6 LcchjJ3yqEY92f9bmSABun8Jna08lermS3zoOAAsSQcGDTBk7CtrcSv5Pfzj/Uf3 JdDCs6D73salngJWw4EFvxFHxjhUP+z3eTDf2+XShFyxL6pigXWVOXuAI2DdT8T1 J3RQNrWYvHp/fvLUwGAxr+MFwiugJeE5gnw/ITrY/pSGEJiqeYn3z3KFq71VJcw1 2QSzO1GFuGdBELh46I21xQxGxzTRY13zhBAEwNZ8XbJJcNUZTgXyIvbdAqjZEK+h CyaK9A3YexVdmQ1hxrg74txnJnBJjIZxas7X7eGORc/oxh/AdaGA9uUBTKFiRJ+9 1Tb5737C/lbVSKyvCWMSx2nHjB4AvDCoqZe94KXEJzU2gnsKU+3Wlok/Q+H55zGt DGzTTonITg8EeUC6PEifX1vwcA90YnR1oj2fAlDzwQVnCjbWcH6VO2ebjppxz3aq XunCaiprKRa1IeG3/FKA6lD1NEkvu0IwHbExMeiQzAI2XPhqqY4= =Hmy1 -----END PGP SIGNATURE----- Tue May 14 07:13:29 UTC 2024 I: Checking whether the package is not for us Tue May 14 07:13:29 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Tue May 14 07:13:29 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Tue May 14 07:14:20 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 13 19:13:35 -12 2024 I: pbuilder-time-stamp: 1715670815 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbseqlib_5.3.5+dfsg-6.dsc] I: copying [./pbseqlib_5.3.5+dfsg.orig.tar.xz] I: copying [./pbseqlib_5.3.5+dfsg-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Aug 22 18:48:33 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbseqlib_5.3.5+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting pbseqlib in pbseqlib-5.3.5+dfsg dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hdf5-1.10.1-support.patch dpkg-source: info: applying hdf5-1.10.0-support.patch dpkg-source: info: applying meson.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying pbbam_2.3.0 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/883/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='6b82b17fa9c74c80b7a0a80c1780fec2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='883' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MOeNxbRH/pbuilderrc_6a3A --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MOeNxbRH/b1 --logfile b1/build.log pbseqlib_5.3.5+dfsg-6.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 13 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/883/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19445 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbbam-dev (>> 2.3.0); however: Package libpbbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbcopper-dev (>> 2.2.0); however: Package libpbcopper-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libgtest-dev{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 58.9 MB of archives. After unpacking 339 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libpbbam-dev (> 2.3.0) which is a virtual package and is not provided by any available package Depends: libpbcopper-dev (> 2.2.0) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libgtest-dev{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 58.9 MB of archives. After unpacking 339 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/883 and its subdirectories Tue May 14 07:14:22 UTC 2024 W: No second build log, what happened? Tue May 14 07:14:22 UTC 2024 W: Downloading the build dependencies failed Tue May 14 07:14:22 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Tue May 14 07:14:22 UTC 2024 W: Network problems are automatically rescheduled after some hours.