Tue May 14 00:46:56 UTC 2024 I: starting to build plasmidid/trixie/armhf on jenkins on '2024-05-14 00:46' Tue May 14 00:46:56 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_27/4834/console.log Tue May 14 00:46:56 UTC 2024 I: Downloading source for trixie/plasmidid=1.6.5+dfsg-2 --2024-05-14 00:46:56-- http://deb.debian.org/debian/pool/main/p/plasmidid/plasmidid_1.6.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘plasmidid_1.6.5+dfsg-2.dsc’ 0K .. 100% 228M=0s 2024-05-14 00:46:56 (228 MB/s) - ‘plasmidid_1.6.5+dfsg-2.dsc’ saved [2224/2224] Tue May 14 00:46:56 UTC 2024 I: plasmidid_1.6.5+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plasmidid Binary: plasmidid Architecture: any Version: 1.6.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: https://github.com/BU-ISCIII/plasmidID Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plasmidid Vcs-Git: https://salsa.debian.org/med-team/plasmidid.git Build-Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+ , bedtools , bowtie2 , samtools , prokka , cd-hit , mash , circos Package-List: plasmidid deb science optional arch=any Checksums-Sha1: aaf8de5458960d7cdcec525688ac606b65f4c0cd 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz 5c6cc06a86c74352ffce0c770b8d61b6b8c21c19 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz Checksums-Sha256: bbe9f8caae7711ca59a5826c6cadf1cca152862a40a1a54361602bddad6d0766 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz e58d797183242730628416a56c29a188227022eec210f67e0253d0fbcf887b90 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz Files: e4c746c886d3384c790a73039e8d6f1b 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz 018ade6017602b77c549c0a13b0138e0 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN/nRQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHW4w//VSK3vFvSQdIsOsxhRrwG5ANMO5JRIV7e D1MgAk5qYnq/fgTRH16kPEF82KNRHlVlZTW1QCSkKZGweTUnUbuU5OtBUjtUv+lt kEirZK0drlPDu85Z1QPbN8PVy92k4jCaEoiLIssMkjsMhYgvVqFmS7TlVvLlJziv 7A3fIpdEds7aF76DEpYY2ONjgbTnehbp28qBTy4JyHjZ1BBXhgzokwCFfwzCccgC CqjmlvCvA0W5rdAeHIvZj7CQtYTar2EhJ7BacEGtPBz2kS8BzxxJpAFNaLTAmdck l2ng+thQuzS5X25msMZ/xqDA5l3mx0CmmStR07Xc2DUg5yrK7pKFyiRPhO6qx9Ho 2CqeWZSquhVAmI4dUDIebD7vkwdiGfzkPsEbM6vgtmVA4iZAI1ALAIluRO0nxIoY h0rAegbsSPt4D4XASVJBJ3RFV6aHSCz2bhO4xGAEFvdLKI+/bkHgUvtW12o5kEHD R4K3J9aB1+GPpVMk6Odw0wUV5Pm5msRDc6xCcQuT+swa2iEhQ6+7fy/cG8ajLnHv qciukAFcCYehUYJqW0WYQCmTJg0c1m+IxGGQdNFo4OTy5oqF2TQ4GtD1h22ZwdYp rldn7/XNvTARPe7j+q+eK1ny4gyYXge8xEFsRZkNqOgriiOxVlhSlh0V79rdkLtj 3QRgEn4QBlg= =/Dmf -----END PGP SIGNATURE----- Tue May 14 00:46:56 UTC 2024 I: Checking whether the package is not for us Tue May 14 00:46:56 UTC 2024 I: Starting 1st build on remote node virt64z-armhf-rb.debian.net. Tue May 14 00:46:56 UTC 2024 I: Preparing to do remote build '1' on virt64z-armhf-rb.debian.net. Tue May 14 00:47:40 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 13 12:47:03 -12 2024 I: pbuilder-time-stamp: 1715647623 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plasmidid_1.6.5+dfsg-2.dsc] I: copying [./plasmidid_1.6.5+dfsg.orig.tar.xz] I: copying [./plasmidid_1.6.5+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 24 16:34:28 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plasmidid_1.6.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting plasmidid in plasmidid-1.6.5+dfsg dpkg-source: info: unpacking plasmidid_1.6.5+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5076/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='84ab5d06df7244228f97739fa9e13344' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5076' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D6XeCmYJ/pbuilderrc_Ad2u --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D6XeCmYJ/b1 --logfile b1/build.log plasmidid_1.6.5+dfsg-2.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/5076/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19445 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on prokka; however: Package prokka is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on circos; however: Package circos is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20230802{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcarp-always-perl{a} libclone-perl{a} libcom-err2{a} libconfig-general-perl{a} libcurl3t64-gnutls{a} libdata-dumper-simple-perl{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgav1-1{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgssapi-krb5-2{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libncurses6{a} libnghttp2-14{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} librav1e0{a} libreadline8t64{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libset-intspan-perl{a} libsharpyuv0{a} libspiffy-perl{a} libssh2-1t64{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libsvtav1enc1d1{a} libtext-format-perl{a} libtiff6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl krb5-locales libarchive-cpio-perl libcgi-pm-perl libgpm2 libheif-plugin-aomenc libheif-plugin-x265 liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 79.1 MB of archives. After unpacking 297 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: bowtie2 which is a virtual package and is not provided by any available package Depends: prokka but it is not installable Depends: mash which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20230802{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcarp-always-perl{a} libclone-perl{a} libcom-err2{a} libconfig-general-perl{a} libcurl3t64-gnutls{a} libdata-dumper-simple-perl{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgav1-1{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgssapi-krb5-2{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libncurses6{a} libnghttp2-14{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} librav1e0{a} libreadline8t64{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libset-intspan-perl{a} libsharpyuv0{a} libspiffy-perl{a} libssh2-1t64{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libsvtav1enc1d1{a} libtext-format-perl{a} libtiff6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl krb5-locales libarchive-cpio-perl libcgi-pm-perl libgpm2 libheif-plugin-aomenc libheif-plugin-x265 liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 79.1 MB of archives. After unpacking 297 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5076 and its subdirectories Tue May 14 00:47:43 UTC 2024 W: No second build log, what happened? Tue May 14 00:47:43 UTC 2024 W: Downloading the build dependencies failed Tue May 14 00:47:43 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Tue May 14 00:47:43 UTC 2024 W: Network problems are automatically rescheduled after some hours.