Wed May 8 11:27:08 UTC 2024 I: starting to build libbio-samtools-perl/trixie/i386 on jenkins on '2024-05-08 11:27' Wed May 8 11:27:08 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/19813/console.log Wed May 8 11:27:08 UTC 2024 I: Downloading source for trixie/libbio-samtools-perl=1.43-5 --2024-05-08 11:27:08-- http://deb.debian.org/debian/pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2228 (2.2K) [text/prs.lines.tag] Saving to: ‘libbio-samtools-perl_1.43-5.dsc’ 0K .. 100% 229M=0s 2024-05-08 11:27:08 (229 MB/s) - ‘libbio-samtools-perl_1.43-5.dsc’ saved [2228/2228] Wed May 8 11:27:08 UTC 2024 I: libbio-samtools-perl_1.43-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-5 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libbam-dev, libbio-perl-perl , libmodule-build-perl, perl-xs-dev, perl:native, zlib1g-dev Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz 9fd7cc61c130c2572d782e1433950b32dbe984d1 9360 libbio-samtools-perl_1.43-5.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz 51d780410bbdae748dc6ab0d4134872d9ccf7397b4d43583d552afc5d1649865 9360 libbio-samtools-perl_1.43-5.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz 776ffbac8666f9382a4ae3e8ad76667a 9360 libbio-samtools-perl_1.43-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXwxWURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHAkg/+PQPjhQsf9eS5Tiy0STA5jPSAwXr4Bext BHpSigEFJixsNJrgnzfhSiuPd1BFy7HbAGRWthOFlx8KThATn43oE/w1ga0MPvv1 RFsHM13X1yUphqWWiNdAyQCum3v9IySJPIKTWoEbTK5tLsxy1FAA6zeO8kItog9W 2cD4cazn9w/Kc7IJCVlpWVjbVkqgtHJoBK+TORpgmVVROoWXScYB2zauCy5Y4bVs xfSIH6cNMcEIlFxIkck1g5DpAI95GIE4nYw2+VpigaPZuVOaSMbVRsAsRytsnI8X DjrZ+mSmDE+ixQiBGOjJPwgmOEKTp9aYJiiqmXlv5IOYHJDcvJwkBpc8hfK9lIIE Gkphu64wkS7L28VjlsBv7Se3lvHA8hrcwOw137qBxsDu8hYUx1x0ivO3Dkp3oDDO Ua0J77QZX9DuN60i4H6ZGE2yKX0+ZOhrXkJgfk5Ua1LvQcEku/X/uI6eLkzkV1y7 NtDRVm7xajq5NOaSqUQEuluQNsh7Nar/9jcdh2K+uxKBiQteIKpHJn5cq29TikfH t6ff38dRkVcGCyLPHpTYdKPxZRyiu/7r8i8BFOuNCnQR0HNI+8OFHNOmSxOT0o6Q FCnLE8D1mfQrEcgTolSMmex5qmDsODRq8KKH1VBdaN6zKNnU14Ob8Rx4RAvSZHKo XIPnCArYmUk= =r778 -----END PGP SIGNATURE----- Wed May 8 11:27:08 UTC 2024 I: Checking whether the package is not for us Wed May 8 11:27:08 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Wed May 8 11:27:08 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Wed May 8 11:27:36 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 10 05:50:11 -12 2025 I: pbuilder-time-stamp: 1749577811 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbio-samtools-perl_1.43-5.dsc] I: copying [./libbio-samtools-perl_1.43.orig.tar.gz] I: copying [./libbio-samtools-perl_1.43-5.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Mar 12 21:13:09 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-samtools-perl_1.43-5.dsc: no acceptable signature found dpkg-source: info: extracting libbio-samtools-perl in libbio-samtools-perl-1.43 dpkg-source: info: unpacking libbio-samtools-perl_1.43.orig.tar.gz dpkg-source: info: unpacking libbio-samtools-perl_1.43-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying typo.patch dpkg-source: info: applying 0001-Lift-prototypes-of-bam_view1-and-bam_sort_core-from-.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3650/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5751d8b592164039b30ade2bba2a4d1a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3650' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RvqSNrfp/pbuilderrc_txBP --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RvqSNrfp/b1 --logfile b1/build.log libbio-samtools-perl_1.43-5.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 8 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3650/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbam-dev, libbio-perl-perl, libmodule-build-perl, perl-xs-dev, perl:native, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19683 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libbio-perl-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libio-string-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libperl-dev{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libmodule-signature-perl libpod-readme-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 24.9 MB of archives. After unpacking 90.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libbam-dev i386 0.1.19+dfsg-6 [130 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libio-string-perl all 1.08-4 [12.1 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libdata-stag-perl all 0.14-3 [448 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libmodule-build-perl all 0.423400-2 [252 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libperl-dev i386 5.38.2-4 [1194 kB] Fetched 24.9 MB in 0s (80.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19683 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_i386.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... 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Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg-3.1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Selecting previously unselected package libbam-dev. Preparing to unpack .../31-libbam-dev_0.1.19+dfsg-6_i386.deb ... Unpacking libbam-dev (0.1.19+dfsg-6) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../32-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../33-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../34-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../35-libmodule-build-perl_0.423400-2_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package libperl-dev:i386. Preparing to unpack .../36-libperl-dev_5.38.2-4_i386.deb ... Unpacking libperl-dev:i386 (5.38.2-4) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libperl-dev:i386 (5.38.2-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbam-dev (0.1.19+dfsg-6) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-samtools-perl-1.43/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-samtools-perl_1.43-5_source.changes dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43' SAMTOOLS=/usr/include/samtools dh_auto_configure /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" Found /usr/include/samtools/bam.h and //lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43' dh_auto_build /usr/bin/perl Build Building Bio-SamTools i686-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/i386-linux-gnu/perl/5.38/CORE -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -Wformat '-Werror=format-security' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -Wformat '-Werror=format-security' -Wdate-time '-D_FORTIFY_SOURCE=2' -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c i686-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/i386-linux-gnu/perl/5.38/CORE '-DVERSION="1.43"' '-DXS_VERSION="1.43"' -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -Wformat '-Werror=format-security' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -Wformat '-Werror=format-security' -Wdate-time '-D_FORTIFY_SOURCE=2' -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') i686-linux-gnu-gcc -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/build/reproducible-path/libbio-samtools-perl-1.43=.' -fstack-protector-strong -Wformat '-Werror=format-security' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-z,relro -Wl,-z,now -L//lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin' dh_auto_test /usr/bin/perl Build test --verbose 1 make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.038002 for linux # Current time local: Tue Jun 10 17:50:31 2025 # Current time GMT: Tue Jun 10 17:50:31 2025 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 0 wallclock secs ( 0.04 usr 0.00 sys + 0.64 cusr 0.06 csys = 0.74 CPU) Result: PASS create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-samtools-perl/ /usr/bin/perl Build install --destdir /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/build/reproducible-path/libbio-samtools-perl-1.43/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/auto/Bio/DB/Sam/Sam.bs Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/auto/Bio/DB/Sam/Sam.so Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Sam.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/Target.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/PileupWrapper.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/Alignment.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/Pileup.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/FetchIterator.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/Query.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/ReadIterator.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Bam/AlignWrapper.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Sam/Segment.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Sam/Constants.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.38/Bio/DB/Sam/SamToGBrowse.pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /build/reproducible-path/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-5_i386.deb'. dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in '../libbio-samtools-perl-dbgsym_1.43-5_i386.deb'. dpkg-genbuildinfo --build=binary -O../libbio-samtools-perl_1.43-5_i386.buildinfo dpkg-genchanges --build=binary -O../libbio-samtools-perl_1.43-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3650 and its subdirectories I: Current time: Tue Jun 10 05:50:35 -12 2025 I: pbuilder-time-stamp: 1749577835 Wed May 8 11:27:37 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Wed May 8 11:27:37 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Wed May 8 11:28:12 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Wed May 8 11:28:13 UTC 2024 I: libbio-samtools-perl_1.43-5_i386.changes: Format: 1.8 Date: Tue, 12 Mar 2024 22:11:21 +0100 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: i386 Version: 1.43-5 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Closes: 1065759 Changes: libbio-samtools-perl (1.43-5) unstable; urgency=medium . * Team upload. . [ Niko Tyni ] * Add missing prototypes Closes: #1065759 . [ Andreas Tille ] * Remove trailing whitespace in debian/changelog (routine-update) Checksums-Sha1: 7e5b67c9440ffb6cbbbfcc48b155e916017e1914 102656 libbio-samtools-perl-dbgsym_1.43-5_i386.deb 53822859d7afd0864dd7c186b0c6e9fc17eedf53 5388 libbio-samtools-perl_1.43-5_i386.buildinfo ef0c93776661873d6a09ca845c2f9aca833bd742 191256 libbio-samtools-perl_1.43-5_i386.deb Checksums-Sha256: b5a33ca54fecb7783f948f3088ace7bb21e95020415dd47dc9696888900336d4 102656 libbio-samtools-perl-dbgsym_1.43-5_i386.deb 6737e9d7904d11d538dd69ad593211c904999bb33f430d4b97a27dbeb5985734 5388 libbio-samtools-perl_1.43-5_i386.buildinfo d4dc469a2461b761fff95e4d8d4838b195ce0eafd32147ee5617745eb4d7656e 191256 libbio-samtools-perl_1.43-5_i386.deb Files: 6203c3ae0731a0ce5c3236b6ef395afd 102656 debug optional libbio-samtools-perl-dbgsym_1.43-5_i386.deb a7a4a9769c5c394a8bfd9dc98c7bd5ab 5388 perl optional libbio-samtools-perl_1.43-5_i386.buildinfo 9a1cdd06478b064555d40edf44762478 191256 perl optional libbio-samtools-perl_1.43-5_i386.deb Wed May 8 11:28:14 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_4-19813.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RvqSNrfp/libbio-samtools-perl_1.43-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RvqSNrfp/libbio-samtools-perl_1.43-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RvqSNrfp/libbio-samtools-perl_1.43-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RvqSNrfp/b1/libbio-samtools-perl_1.43-5_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.RvqSNrfp/b2/libbio-samtools-perl_1.43-5_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.375s) 0.375s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 739ms CPU time consumed: 740ms Wed May 8 11:28:15 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 11:28:15 UTC 2024 I: libbio-samtools-perl from trixie built successfully and reproducibly on i386. Wed May 8 11:28:16 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 11:28:16 UTC 2024 I: Submitting 8.0K b1/libbio-samtools-perl_1.43-5_i386.buildinfo.asc Wed May 8 11:28:18 UTC 2024 I: Submitting 8.0K b2/libbio-samtools-perl_1.43-5_i386.buildinfo.asc Wed May 8 11:28:19 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 11:28:19 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 11:28:19 UTC 2024 I: Removing signed libbio-samtools-perl_1.43-5_i386.buildinfo.asc files: removed './b1/libbio-samtools-perl_1.43-5_i386.buildinfo.asc' removed './b2/libbio-samtools-perl_1.43-5_i386.buildinfo.asc'