Mon May 6 13:54:13 UTC 2024 I: starting to build maffilter/trixie/i386 on jenkins on '2024-05-06 13:53' Mon May 6 13:54:13 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/24627/console.log Mon May 6 13:54:13 UTC 2024 I: Downloading source for trixie/maffilter=1.3.1+dfsg-6 --2024-05-06 13:54:16-- http://deb.debian.org/debian/pool/main/m/maffilter/maffilter_1.3.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2238 (2.2K) [text/prs.lines.tag] Saving to: ‘maffilter_1.3.1+dfsg-6.dsc’ 0K .. 100% 235M=0s 2024-05-06 13:54:16 (235 MB/s) - ‘maffilter_1.3.1+dfsg-6.dsc’ saved [2238/2238] Mon May 6 13:54:16 UTC 2024 I: maffilter_1.3.1+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: maffilter Binary: maffilter, maffilter-examples Architecture: any all Version: 1.3.1+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Julien Dutheil , Pranav Ballaney Homepage: https://jydu.github.io/maffilter/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/maffilter Vcs-Git: https://salsa.debian.org/med-team/maffilter.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-omics-dev, libboost-iostreams-dev, zlib1g-dev, libbz2-dev Package-List: maffilter deb science optional arch=any maffilter-examples deb science optional arch=all Checksums-Sha1: 52fb7acc20ef914ef4e44676b316cf3753c46c9b 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 38d6a27b6cb4736f809d80ef7f0c00ea2fe31427 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz Checksums-Sha256: 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 99b7f757063096a6d5c51725e8da009e89a93db24fb2b8bec744df818abcfac6 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz Files: 3548c76d884bacc4ce267d70f304435e 78668340 maffilter_1.3.1+dfsg.orig.tar.xz b33270bbd567a7c6555149285d1215a9 4940 maffilter_1.3.1+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYCrHwACgkQPCZ2P2xn 5uIpFhAArz+NErkZNwZCfY0Un+O+osPVGHYlzl9B+Ei7uLqrLQS9Gu2QYjcEH2R8 Ea0y17CIjIlTpDrd1VyaIVbmFE0H7RJSJu4MjNF6rkRFOfith+7gXvQqdLa5mAjC e8Yb2aB7hztTz4tz9nN2pfktzAfcGf9y0ryrSTYrrGx9455Sv/OVLL2PaagUzdyH dyGC/8eIGZrXRDgIoXegqoWJgzFgpfpnpf7MbOrb/15FmlbJ1vg2Kmyi9rviz8tF NdqGbkRIIMWxLJGWzIKEDq6gR2aFkjqemaqaeBObx/iONjwjTKHXP1UDhU8GXYNX C2Z0kVVzNg39Z8i13GqtCRLCfhz7pY79u8LOZfu7Ido5xkD9Qcmpb7pZJxTG4ikm PsZ0mN9o5rPmHHFGAh6PGRJ6NlzqZYq3CAPYHdIQbnZgx9SyyPKStBpMzV7HKpLp VbD0z//i8dX5xZLNV1GemeIqO7g0mjYBlYLtbna70PLz7IMz+djXYOCQE1ZLbnhD dIFjD1xL3keGDJIo/OuwnkPClp/2rhqBCpgZDhz4kXnhykEJU+ENb4DtgVSsZDyH 0whfX4BURxge53wYamh90oUtVV097O+JzPlL2EmOlK6Mr+I4dqyTRgwmTODDqtzp Hyq9dT7zOgbNp1c5kAmF/ct6eZAsoi6+0NpBFhvedJBzw+YxD3U= =UcyI -----END PGP SIGNATURE----- Mon May 6 13:54:16 UTC 2024 I: Checking whether the package is not for us Mon May 6 13:54:16 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Mon May 6 13:54:16 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Mon May 6 13:57:08 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 6 01:54:19 -12 2024 I: pbuilder-time-stamp: 1715003659 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [maffilter_1.3.1+dfsg-6.dsc] I: copying [./maffilter_1.3.1+dfsg.orig.tar.xz] I: copying [./maffilter_1.3.1+dfsg-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Mar 26 11:07:40 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./maffilter_1.3.1+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting maffilter in maffilter-1.3.1+dfsg dpkg-source: info: unpacking maffilter_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking maffilter_1.3.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/48267/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='ea360d1754f14aa08f5e937a0daf8bb7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='48267' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uwdnzbvE/pbuilderrc_Fb8u --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uwdnzbvE/b1 --logfile b1/build.log maffilter_1.3.1+dfsg-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 3 08:38 /bin -> usr/bin I: user script /srv/workspace/pbuilder/48267/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-omics-dev, libboost-iostreams-dev, zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19683 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-omics-dev; however: Package libbpp-phyl-omics-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl-omics-dev{a} libbpp-phyl-omics3t64{a} libbpp-phyl12t64{a} libbpp-seq-dev{a} libbpp-seq-omics-dev{a} libbpp-seq-omics3t64{a} libbpp-seq12t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl lynx psmisc publicsuffix wget 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 71.8 MB of archives. After unpacking 429 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.2-2 [387 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 27 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.17+dfsg-1 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.7.1-3 [477 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.48.0-1.1 [156 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.29.2-2 [2167 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 cmake i386 3.29.2-2 [11.9 MB] Get: 43 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 50 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 icu-devtools i386 72.1-4+b1 [216 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-2.1+b1 [10.6 MB] Get: 58 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83.0 i386 1.83.0-2.1+b1 [328 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libicu-dev i386 72.1-4+b1 [10.6 MB] Get: 60 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83-dev i386 1.83.0-2.1+b1 [347 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libboost-iostreams1.83-dev i386 1.83.0-2.1+b1 [264 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 63 http://deb.debian.org/debian trixie/main i386 libbpp-core4t64 i386 2.4.1-12 [655 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libbpp-core-dev i386 2.4.1-12 [1003 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libbpp-seq12t64 i386 2.4.1-12 [522 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libbpp-phyl12t64 i386 2.4.1-10 [1715 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libbpp-seq-dev i386 2.4.1-12 [773 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libbpp-phyl-dev i386 2.4.1-10 [3112 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libbpp-seq-omics3t64 i386 2.4.1-11 [232 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libbpp-phyl-omics3t64 i386 2.4.1-6 [76.2 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libbpp-seq-omics-dev i386 2.4.1-11 [386 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libbpp-phyl-omics-dev i386 2.4.1-6 [135 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libbz2-dev i386 1.0.8-5.1 [31.4 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libxml-libxml-perl i386 2.0207+dfsg+really+2.0134-1+b3 [323 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 tex-common all 6.18 [32.5 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 texinfo-lib i386 7.1-3+b1 [232 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 texinfo all 7.1-3 [1748 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Fetched 71.8 MB in 1s (74.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19683 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_i386.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../18-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../19-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../20-libarchive13t64_3.7.2-2_i386.deb ... Unpacking libarchive13t64:i386 (3.7.2-2) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../21-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../22-libkrb5support0_1.20.1-6+b1_i386.deb ... Unpacking libkrb5support0:i386 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../23-libcom-err2_1.47.1~rc2-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../24-libk5crypto3_1.20.1-6+b1_i386.deb ... Unpacking libk5crypto3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../25-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../26-libkrb5-3_1.20.1-6+b1_i386.deb ... Unpacking libkrb5-3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../27-libgssapi-krb5-2_1.20.1-6+b1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../28-libsasl2-modules-db_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../29-libsasl2-2_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../30-libldap-2.5-0_2.5.17+dfsg-1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../31-libnghttp2-14_1.61.0-1+b1_i386.deb ... Unpacking libnghttp2-14:i386 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../32-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../33-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../34-libssh2-1t64_1.11.0-4.1+b2_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../35-libcurl4t64_8.7.1-3_i386.deb ... Unpacking libcurl4t64:i386 (8.7.1-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../36-libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../37-libjsoncpp25_1.9.5-6+b2_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../38-librhash0_1.4.3-3+b1_i386.deb ... Unpacking librhash0:i386 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:i386. Preparing to unpack .../39-libuv1t64_1.48.0-1.1_i386.deb ... Unpacking libuv1t64:i386 (1.48.0-1.1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../40-cmake-data_3.29.2-2_all.deb ... Unpacking cmake-data (3.29.2-2) ... Selecting previously unselected package cmake. Preparing to unpack .../41-cmake_3.29.2-2_i386.deb ... Unpacking cmake (3.29.2-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../42-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../43-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../44-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../45-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../46-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../47-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../48-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../49-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../50-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../51-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../52-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../53-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../54-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../55-icu-devtools_72.1-4+b1_i386.deb ... Unpacking icu-devtools (72.1-4+b1) ... Selecting previously unselected package libboost1.83-dev:i386. Preparing to unpack .../56-libboost1.83-dev_1.83.0-2.1+b1_i386.deb ... Unpacking libboost1.83-dev:i386 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-regex1.83.0:i386. Preparing to unpack .../57-libboost-regex1.83.0_1.83.0-2.1+b1_i386.deb ... Unpacking libboost-regex1.83.0:i386 (1.83.0-2.1+b1) ... Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../58-libicu-dev_72.1-4+b1_i386.deb ... Unpacking libicu-dev:i386 (72.1-4+b1) ... Selecting previously unselected package libboost-regex1.83-dev:i386. Preparing to unpack .../59-libboost-regex1.83-dev_1.83.0-2.1+b1_i386.deb ... Unpacking libboost-regex1.83-dev:i386 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-iostreams1.83-dev:i386. Preparing to unpack .../60-libboost-iostreams1.83-dev_1.83.0-2.1+b1_i386.deb ... Unpacking libboost-iostreams1.83-dev:i386 (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-iostreams-dev:i386. Preparing to unpack .../61-libboost-iostreams-dev_1.83.0.2+b2_i386.deb ... Unpacking libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Selecting previously unselected package libbpp-core4t64:i386. Preparing to unpack .../62-libbpp-core4t64_2.4.1-12_i386.deb ... Unpacking libbpp-core4t64:i386 (2.4.1-12) ... Selecting previously unselected package libbpp-core-dev:i386. Preparing to unpack .../63-libbpp-core-dev_2.4.1-12_i386.deb ... Unpacking libbpp-core-dev:i386 (2.4.1-12) ... Selecting previously unselected package libbpp-seq12t64:i386. Preparing to unpack .../64-libbpp-seq12t64_2.4.1-12_i386.deb ... Unpacking libbpp-seq12t64:i386 (2.4.1-12) ... Selecting previously unselected package libbpp-phyl12t64:i386. Preparing to unpack .../65-libbpp-phyl12t64_2.4.1-10_i386.deb ... Unpacking libbpp-phyl12t64:i386 (2.4.1-10) ... Selecting previously unselected package libbpp-seq-dev:i386. Preparing to unpack .../66-libbpp-seq-dev_2.4.1-12_i386.deb ... Unpacking libbpp-seq-dev:i386 (2.4.1-12) ... Selecting previously unselected package libbpp-phyl-dev:i386. Preparing to unpack .../67-libbpp-phyl-dev_2.4.1-10_i386.deb ... Unpacking libbpp-phyl-dev:i386 (2.4.1-10) ... Selecting previously unselected package libbpp-seq-omics3t64:i386. Preparing to unpack .../68-libbpp-seq-omics3t64_2.4.1-11_i386.deb ... Unpacking libbpp-seq-omics3t64:i386 (2.4.1-11) ... Selecting previously unselected package libbpp-phyl-omics3t64:i386. Preparing to unpack .../69-libbpp-phyl-omics3t64_2.4.1-6_i386.deb ... Unpacking libbpp-phyl-omics3t64:i386 (2.4.1-6) ... Selecting previously unselected package libbpp-seq-omics-dev:i386. Preparing to unpack .../70-libbpp-seq-omics-dev_2.4.1-11_i386.deb ... Unpacking libbpp-seq-omics-dev:i386 (2.4.1-11) ... Selecting previously unselected package libbpp-phyl-omics-dev:i386. Preparing to unpack .../71-libbpp-phyl-omics-dev_2.4.1-6_i386.deb ... Unpacking libbpp-phyl-omics-dev:i386 (2.4.1-6) ... Selecting previously unselected package libbz2-dev:i386. Preparing to unpack .../72-libbz2-dev_1.0.8-5.1_i386.deb ... Unpacking libbz2-dev:i386 (1.0.8-5.1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../73-libtext-unidecode-perl_1.30-3_all.deb ... Unpacking libtext-unidecode-perl (1.30-3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../74-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../75-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../76-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../77-libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b3_i386.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... Selecting previously unselected package tex-common. Preparing to unpack .../78-tex-common_6.18_all.deb ... Unpacking tex-common (6.18) ... Selecting previously unselected package texinfo-lib. Preparing to unpack .../79-texinfo-lib_7.1-3+b1_i386.deb ... Unpacking texinfo-lib (7.1-3+b1) ... Selecting previously unselected package texinfo. Preparing to unpack .../80-texinfo_7.1-3_all.deb ... Unpacking texinfo (7.1-3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../81-zlib1g-dev_1%3a1.3.dfsg-3.1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libboost1.83-dev:i386 (1.83.0-2.1+b1) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libbpp-core4t64:i386 (2.4.1-12) ... Setting up libboost-regex1.83.0:i386 (1.83.0-2.1+b1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libuv1t64:i386 (1.48.0-1.1) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.61.0-1+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up texinfo-lib (7.1-3+b1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up libkrb5support0:i386 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Setting up libbpp-core-dev:i386 (2.4.1-12) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:i386 (2:4.0.4-4) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:i386 (1.9.5-6+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up libk5crypto3:i386 (1.20.1-6+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:i386 (1.4.3-3+b1) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up cmake-data (3.29.2-2) ... Setting up libkrb5-3:i386 (1.20.1-6+b1) ... Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libicu-dev:i386 (72.1-4+b1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up libbz2-dev:i386 (1.0.8-5.1) ... Setting up libbpp-seq12t64:i386 (2.4.1-12) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libbpp-seq-dev:i386 (2.4.1-12) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libbpp-phyl12t64:i386 (2.4.1-10) ... Setting up libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-phyl-dev:i386 (2.4.1-10) ... Setting up libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Setting up libboost-regex1.83-dev:i386 (1.83.0-2.1+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libbpp-seq-omics3t64:i386 (2.4.1-11) ... Setting up libarchive13t64:i386 (3.7.2-2) ... Setting up libbpp-phyl-omics3t64:i386 (2.4.1-6) ... Setting up libcurl4t64:i386 (8.7.1-3) ... Setting up libboost-iostreams1.83-dev:i386 (1.83.0-2.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libbpp-seq-omics-dev:i386 (2.4.1-11) ... Setting up cmake (3.29.2-2) ... Setting up libbpp-phyl-omics-dev:i386 (2.4.1-6) ... Setting up debhelper (13.15.3) ... Setting up texinfo (7.1-3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/maffilter-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../maffilter_1.3.1+dfsg-6_source.changes dpkg-buildpackage: info: source package maffilter dpkg-buildpackage: info: source version 1.3.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:6 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/i386-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/i386-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/i386-linux-gnu/libbpp-seq-omics.a -- shared lib: /usr/lib/i386-linux-gnu/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/i386-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-phyl-omics 3.0.0 found: -- static lib: /usr/lib/i386-linux-gnu/libbpp-phyl-omics.a -- shared lib: /usr/lib/i386-linux-gnu/libbpp-phyl-omics.so.3.0.0 -- includes: /usr/include -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.34.0") found components: iostreams -- Boost libraries found here: includes: /usr/include dynamic libraries: Boost::iostreams -- Library z found here: includes: /usr/include dynamic libraries: /usr/lib/i386-linux-gnu/libz.so -- Library bz2 found here: includes: /usr/include dynamic libraries: /usr/lib/i386-linux-gnu/libbz2.so -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu dh_auto_build cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/MafFilter /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/doc /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/maffilter-1.3.1+dfsg /build/reproducible-path/maffilter-1.3.1+dfsg/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/man /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' [ 12%] Compressing manpage maffilter.1 [ 37%] Generating info page [ 37%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o [ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/man/maffilter.1 > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/man/maffilter.1.gz cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/doc && /usr/bin/makeinfo --no-split -o /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/doc/maffilter.info /build/reproducible-path/maffilter-1.3.1+dfsg/doc/maffilter.texi cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/SystemCallMafIterator.cpp cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -MF CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o.d -o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/TreeBuildingSystemCallMafIterator.cpp [ 75%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/MafFilter && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -MD -MT MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o -MF CMakeFiles/maffilter.dir/MafFilter.cpp.o.d -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /build/reproducible-path/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' [ 75%] Built target man [ 87%] Compressing info page cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/doc && /usr/bin/gzip -c -n -9 /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/doc/maffilter.info > /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/doc/maffilter.info.gz make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' [ 87%] Built target info [100%] Linking CXX executable maffilter cd /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/MafFilter && /usr/bin/cmake -E cmake_link_script CMakeFiles/maffilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maffilter-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/maffilter.dir/MafFilter.cpp.o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -o maffilter /usr/lib/i386-linux-gnu/libbpp-phyl-omics.so.3.0.0 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 -lz -lbz2 /usr/lib/i386-linux-gnu/libbpp-seq-omics.so.3.0.0 /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' [100%] Built target maffilter make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/maffilter-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/maffilter-1.3.1+dfsg -B/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/bin/maffilter -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/info/maffilter.info.gz -- Installing: /build/reproducible-path/maffilter-1.3.1+dfsg/debian/tmp/usr/share/man/man1/maffilter.1.gz make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg/obj-i686-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/maffilter-1.3.1+dfsg' find debian/*/usr/share -name "*.bpp" -executable -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/maffilter-1.3.1+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'maffilter' in '../maffilter_1.3.1+dfsg-6_i386.deb'. dpkg-deb: building package 'maffilter-dbgsym' in '../maffilter-dbgsym_1.3.1+dfsg-6_i386.deb'. dpkg-deb: building package 'maffilter-examples' in '../maffilter-examples_1.3.1+dfsg-6_all.deb'. dpkg-genbuildinfo --build=binary -O../maffilter_1.3.1+dfsg-6_i386.buildinfo dpkg-genchanges --build=binary -O../maffilter_1.3.1+dfsg-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/48267 and its subdirectories I: Current time: Mon May 6 01:57:06 -12 2024 I: pbuilder-time-stamp: 1715003826 Mon May 6 13:57:09 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Mon May 6 13:57:09 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Mon May 6 14:13:21 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Mon May 6 14:13:24 UTC 2024 I: maffilter_1.3.1+dfsg-6_i386.changes: Format: 1.8 Date: Tue, 26 Mar 2024 09:59:19 +0100 Source: maffilter Binary: maffilter maffilter-dbgsym maffilter-examples Architecture: i386 all Version: 1.3.1+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: maffilter - process genome alignment in the Multiple Alignment Format maffilter-examples - process genome alignment in the Multiple Alignment Format (exampl Changes: maffilter (1.3.1+dfsg-6) unstable; urgency=medium . * Team upload. * Added patch to combine upstream's c++ flags with out own. * d/rules: simplified Checksums-Sha1: 92842a393e66daa98b96ad440f4513ddb1ab3870 2860008 maffilter-dbgsym_1.3.1+dfsg-6_i386.deb 67b2e7e58203dcbd9c0a13d70955ce58a1b03644 79214828 maffilter-examples_1.3.1+dfsg-6_all.deb 097f4758d0295e3f77180f53972c21727acb81bd 7359 maffilter_1.3.1+dfsg-6_i386.buildinfo bf930f3b9c1d4c8e49ce79613db2cae5373498b1 272540 maffilter_1.3.1+dfsg-6_i386.deb Checksums-Sha256: a70d1f3ed5084838101220e94bad5f51e0a8058c7bfbdbe7947e21dbaeafc14b 2860008 maffilter-dbgsym_1.3.1+dfsg-6_i386.deb 06db35a5ab659358ee4e28773d80d3632896e16d3a382ad210fee976d392a2fa 79214828 maffilter-examples_1.3.1+dfsg-6_all.deb d248a05ec328aca756fad596803d786875d4da59632820598e738289585aef0e 7359 maffilter_1.3.1+dfsg-6_i386.buildinfo 38b361a68ed9312c16889f427821a050fd5285ab2f993bbbf1b3b35823a17ee1 272540 maffilter_1.3.1+dfsg-6_i386.deb Files: ae12a358532a4a82f02e2e7947510710 2860008 debug optional maffilter-dbgsym_1.3.1+dfsg-6_i386.deb 1ecf76f5a27fabf87fa64bd808cd5c93 79214828 science optional maffilter-examples_1.3.1+dfsg-6_all.deb 057385ed0b77736c03a814bb595b1e65 7359 science optional maffilter_1.3.1+dfsg-6_i386.buildinfo 26e809f03cfc65714ae6209c9c3165ea 272540 science optional maffilter_1.3.1+dfsg-6_i386.deb Mon May 6 14:13:26 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_3-24627.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.uwdnzbvE/maffilter_1.3.1+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.uwdnzbvE/maffilter_1.3.1+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.uwdnzbvE/maffilter_1.3.1+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.uwdnzbvE/b1/maffilter_1.3.1+dfsg-6_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.uwdnzbvE/b2/maffilter_1.3.1+dfsg-6_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 8.399s) 8.399s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 5.344s) 5.344s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 9.526s CPU time consumed: 3.152s Mon May 6 14:13:36 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon May 6 14:13:37 UTC 2024 I: maffilter from trixie built successfully and reproducibly on i386. Mon May 6 14:13:40 UTC 2024 I: Submitting .buildinfo files to external archives: Mon May 6 14:13:40 UTC 2024 I: Submitting 12K b1/maffilter_1.3.1+dfsg-6_i386.buildinfo.asc Mon May 6 14:13:41 UTC 2024 I: Submitting 12K b2/maffilter_1.3.1+dfsg-6_i386.buildinfo.asc Mon May 6 14:13:42 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 6 14:13:42 UTC 2024 I: Done submitting .buildinfo files. Mon May 6 14:13:42 UTC 2024 I: Removing signed maffilter_1.3.1+dfsg-6_i386.buildinfo.asc files: removed './b1/maffilter_1.3.1+dfsg-6_i386.buildinfo.asc' removed './b2/maffilter_1.3.1+dfsg-6_i386.buildinfo.asc'