Sun Apr 28 02:05:01 UTC 2024 I: starting to build btllib/unstable/amd64 on jenkins on '2024-04-28 02:04' Sun Apr 28 02:05:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/6884/console.log Sun Apr 28 02:05:01 UTC 2024 I: Downloading source for unstable/btllib=1.4.10+dfsg-1 --2024-04-28 02:05:01-- http://deb.debian.org/debian/pool/main/b/btllib/btllib_1.4.10%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2161 (2.1K) [text/prs.lines.tag] Saving to: ‘btllib_1.4.10+dfsg-1.dsc’ 0K .. 100% 248M=0s 2024-04-28 02:05:01 (248 MB/s) - ‘btllib_1.4.10+dfsg-1.dsc’ saved [2161/2161] Sun Apr 28 02:05:01 UTC 2024 I: btllib_1.4.10+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: btllib Binary: libbtllib-dev, btllib-tools Architecture: any Version: 1.4.10+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bcgsc/btllib Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/btllib Vcs-Git: https://salsa.debian.org/med-team/btllib.git Build-Depends: debhelper-compat (= 13), dh-exec, meson, ninja-build, libcpptoml-dev, libomp-dev, samtools Package-List: btllib-tools deb science optional arch=any libbtllib-dev deb libdevel optional arch=any-amd64,arm64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: b4dc0dbae9ca4543be0ecf20f48396fadcdeb6a2 209360 btllib_1.4.10+dfsg.orig.tar.xz 0551566c884a2b7acb54d90bc8aee15c56db73b7 3268 btllib_1.4.10+dfsg-1.debian.tar.xz Checksums-Sha256: 6eba5c5626680c3edf8dda9de6af05b401a560986ea77770c14c053e7ba9743c 209360 btllib_1.4.10+dfsg.orig.tar.xz cce781d2defaf1b8192af143662f5dc1fc172f3a44c3d977e08dc33bc57536ff 3268 btllib_1.4.10+dfsg-1.debian.tar.xz Files: e3ce32eaf3f812264056fe26758b7483 209360 btllib_1.4.10+dfsg.orig.tar.xz 79076576244cd8561bfda4c8e55b5b45 3268 btllib_1.4.10+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPbc0sRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFPzw//TYsmwEOKs9yojPq6Ee9leadja7dxJSjy QSQGunYss5zzGubViyhMZKwtWQrhxj7eMtWDEcZzruC76CNNEUuSkgKQm7PimdSM INSOx0iFAJX0qcHadLrdqP3lQU6ZX4fIlD/KSZ8vTU+Cv+1jJhrj2lByatE3r8TO ZgnXLaOuIBLwrbrgDkwdhNWvs1G3plcCY6WWObpro4CCaIrLGQ0lv3Rl4ucKMgAs wplM9vQm9GCHekXHU9/iXU5nlGC/161CaXn0PIvhw78LMcVGnUeRLavbhoNgHjlE lrrU2zshltXbqjq7Y3ccMSM8Sqe9u3U6NJ2emfixQFx6YWFaEJ5UgWAvwndg9qwn YxGIBco9iH3wpqGgYX8nkSiHlptK7WLsSR1Z48Vw2rfJ0upDIYAfvMsVfG9FMs1r vNhwCiBtxnbkjhp79laA5P7ouMPziROuMzBkk+HMAaPPfyswFeIJ7U3xDLQ/Fdf2 JAn1+nTxKoNRo98GgiJTlID/OOYD9ppi0xsfaJrcnsQii54J77LnapLbdcCZPiJt mzPAPPRLP+fZFFm3tkE0iJ6PQeVZPKtygfre3Y6iCjPf1PIvrSk9GogBYTOoyPAh lfOLCNPS2Ayunj/CqQ6pQmROGrw8f0pdvMCz0NL+/Wz4SJAAC8QWWUlDKY/lnMnA /1BdXWdxUGs= =1qap -----END PGP SIGNATURE----- Sun Apr 28 02:05:01 UTC 2024 I: Checking whether the package is not for us Sun Apr 28 02:05:01 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Sun Apr 28 02:05:01 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Sun Apr 28 02:06:39 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 30 20:28:05 -12 2025 I: pbuilder-time-stamp: 1748680085 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [btllib_1.4.10+dfsg-1.dsc] I: copying [./btllib_1.4.10+dfsg.orig.tar.xz] I: copying [./btllib_1.4.10+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 2 08:24:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./btllib_1.4.10+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting btllib in btllib-1.4.10+dfsg dpkg-source: info: unpacking btllib_1.4.10+dfsg.orig.tar.xz dpkg-source: info: unpacking btllib_1.4.10+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_object_files_at_right_loc.patch dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3923775/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='93c580dc050e4251a468f1a2093bf1eb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3923775' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.q2b3q0Vj/pbuilderrc_4UFS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.q2b3q0Vj/b1 --logfile b1/build.log btllib_1.4.10+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 29 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3923775/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, meson, ninja-build, libcpptoml-dev, libomp-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on libcpptoml-dev; however: Package libcpptoml-dev is not installed. pbuilder-satisfydepends-dummy depends on libomp-dev; however: Package libomp-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm16t64{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libomp-16-dev{a} libomp-dev{a} libomp5-16t64{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libz3-4{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 64.1 MB of archives. After unpacking 296 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.29 [25.4 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 52 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.7.1-3 [432 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libllvm16t64 amd64 1:16.0.6-25 [23.1 MB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.4+20240414-1 [104 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libomp5-16t64 amd64 1:16.0.6-25 [591 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libomp-16-dev amd64 1:16.0.6-25 [820 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libomp-dev amd64 1:16.0-58.1 [4964 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 ninja-build amd64 1.11.1-2 [142 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 meson all 1.4.0-2 [603 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.19.2-1+b1 [645 kB] Fetched 64.1 MB in 1s (63.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/btllib-1.4.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../btllib_1.4.10+dfsg-1_source.changes dpkg-buildpackage: info: source package btllib dpkg-buildpackage: info: source version 1.4.10+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.4.0 Source dir: /build/reproducible-path/btllib-1.4.10+dfsg Build dir: /build/reproducible-path/btllib-1.4.10+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: btllib Project version: 1.4.9 C++ compiler for the host machine: c++ (gcc 13.2.0 "c++ (Debian 13.2.0-23) 13.2.0") C++ linker for the host machine: c++ ld.bfd 2.42 Host machine cpu family: x86_64 Host machine cpu: x86_64 Configuring config.hpp using configuration Run-time dependency threads found: YES Run-time dependency OpenMP found: YES 4.5 Program samtools found: YES (/usr/bin/samtools) Program gzip found: YES (/usr/bin/gzip) Program xz found: YES (/usr/bin/xz) Program bzip2 found: YES (/usr/bin/bzip2) Program tar found: YES (/usr/bin/tar) Program swig found: NO Program doxygen found: NO WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in future releases of meson. See also: https://github.com/mesonbuild/meson/issues/9300 Program python3 found: YES (/usr/bin/python3) Program python3-config found: NO Message: python3-config not found, skipping Python wrappers. Build targets in project: 23 btllib 1.4.9 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload python.bytecompile: -1 Found ninja-1.11.1 at /usr/bin/ninja dh_auto_build cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j12 -v [1/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o.d -o 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-I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/cstring.cpp [4/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_fasta_module.cpp [5/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_gfa2_module.cpp [6/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_multiline_fasta_module.cpp [7/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_sam_module.cpp [8/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_multiline_fastq_module.cpp [9/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/status.cpp [10/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash_lowlevel.cpp [11/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq.cpp [12/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/util.cpp [13/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_writer.cpp [14/51] c++ -Itests/util_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -MF tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o.d -o tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/util.cpp [15/51] c++ -Itests/cstring_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -MF tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o.d -o tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/cstring.cpp [16/51] c++ -Itests/seq_reader_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -MF tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o.d -o tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fasta_module.cpp [17/51] c++ -Itests/seq_reader_sam_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -MF tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o.d -o tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_sam_module.cpp [18/51] c++ -Itests/seq_reader_multiline_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -MF tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o.d -o tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_multiline_fasta_module.cpp [19/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/data_stream.cpp [20/51] c++ -Itests/seq_reader_gfa2_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -MF tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o.d -o tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_gfa2_module.cpp [21/51] c++ -Itests/seq_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -MF tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o.d -o tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq.cpp [22/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash.cpp [23/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/process_pipeline.cpp [24/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader.cpp [25/51] c++ -Itests/data_stream_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -MF tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o.d -o tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/data_stream.cpp [26/51] c++ -Itests/seq_reader_multiline_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -MF tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o.d -o tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_multiline_fastq_module.cpp [27/51] c++ -Itests/seq_writer_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -MF tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o.d -o tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_writer.cpp [28/51] c++ -Itests/seq_reader_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -MF tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o.d -o tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fastq_module.cpp [29/51] c++ -Itests/bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -MF tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o.d -o tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/bloom_filter.cpp [30/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/bloom_filter.cpp [31/51] rm -f libbtllib.a && gcc-ar csrD libbtllib.a libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o [32/51] c++ -Itests/nthash_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -MF tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o.d -o tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/nthash.cpp [33/51] c++ -o tests/cstring_test tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [34/51] c++ -o tests/seq_reader_gfa2_module_test tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [35/51] c++ -o tests/util_test tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [36/51] c++ -o tests/seq_reader_fasta_module_test tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [37/51] c++ -o tests/seq_reader_multiline_fasta_module_test tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [38/51] c++ -o tests/seq_reader_sam_module_test tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [39/51] c++ -o tests/seq_reader_fastq_module_test tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [40/51] c++ -o tests/seq_reader_multiline_fastq_module_test tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [41/51] c++ -o tests/nthash_test tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [42/51] c++ -o tests/seq_writer_test tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [43/51] c++ -o tests/seq_test tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [44/51] c++ -o tests/bloom_filter_test tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [45/51] c++ -o tests/data_stream_test tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [46/51] c++ -Irecipes/indexlr.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -MF recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o.d -o recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/recipes/indexlr.cpp [47/51] c++ -Itests/counting_bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -MF tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o.d -o tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/counting_bloom_filter.cpp [48/51] c++ -o recipes/indexlr recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [49/51] c++ -o tests/counting_bloom_filter_test tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [50/51] c++ -Itests/indexlr_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -MF tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o.d -o tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/indexlr.cpp [51/51] c++ -o tests/indexlr_test tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/btllib-1.4.10+dfsg' cp -a tests/ obj-*/ dh_auto_test cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=12 meson test ninja: Entering directory `/build/reproducible-path/btllib-1.4.10+dfsg/obj-x86_64-linux-gnu' ninja: no work to do. 1/15 util OK 0.16s 2/15 cstring OK 0.13s 3/15 seq_reader_gfa2_module OK 0.11s 4/15 seq_reader_fasta_module OK 0.21s 5/15 nthash OK 0.07s 6/15 indexlr OK 0.20s 7/15 seq OK 0.05s 8/15 seq_reader_multiline_fasta_module OK 0.21s 9/15 bloom_filter OK 0.17s 10/15 counting_bloom_filter OK 0.14s 11/15 data_stream OK 0.17s 12/15 seq_reader_sam_module OK 0.42s 13/15 seq_reader_multiline_fastq_module OK 0.35s 14/15 seq_reader_fastq_module OK 1.18s 15/15 seq_writer OK 3.15s Ok: 15 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/reproducible-path/btllib-1.4.10+dfsg/obj-x86_64-linux-gnu/meson-logs/testlog.txt make[1]: Leaving directory '/build/reproducible-path/btllib-1.4.10+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && DESTDIR=/build/reproducible-path/btllib-1.4.10\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing libbtllib.a to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/lib Installing recipes/indexlr to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/bin Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/cstring.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_writer.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/util.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/nthash_consts.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/graph.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_multiline_fasta_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_sam_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/data_stream.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/mi_bloom_filter.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_fasta_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_gfa2_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/nthash.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/bloom_filter.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/order_queue.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/status.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/nthash_lowlevel.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/process_pipeline.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/counting_bloom_filter.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_fastq_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/indexlr.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.4.10+dfsg/include/btllib/seq_reader_multiline_fastq_module.hpp to /build/reproducible-path/btllib-1.4.10+dfsg/debian/tmp/usr/include/btllib Running custom install script '/build/reproducible-path/btllib-1.4.10+dfsg/scripts/install-cpptoml' Running custom install script '/build/reproducible-path/btllib-1.4.10+dfsg/scripts/install-sdsl-lite' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbtllib-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'btllib-tools' in '../btllib-tools_1.4.10+dfsg-1_amd64.deb'. dpkg-deb: building package 'libbtllib-dev' in '../libbtllib-dev_1.4.10+dfsg-1_amd64.deb'. dpkg-deb: building package 'btllib-tools-dbgsym' in '../btllib-tools-dbgsym_1.4.10+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../btllib_1.4.10+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../btllib_1.4.10+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3923775 and its subdirectories I: Current time: Fri May 30 20:29:38 -12 2025 I: pbuilder-time-stamp: 1748680178 Sun Apr 28 02:06:40 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Sun Apr 28 02:06:40 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Sun Apr 28 02:07:46 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Sun Apr 28 02:07:47 UTC 2024 I: btllib_1.4.10+dfsg-1_amd64.changes: Format: 1.8 Date: Thu, 02 Feb 2023 08:10:47 +0100 Source: btllib Binary: btllib-tools btllib-tools-dbgsym libbtllib-dev Architecture: amd64 Version: 1.4.10+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: btllib-tools - Bioinformatics Technology Lab common code library tools libbtllib-dev - Bioinformatics Technology Lab common code library Closes: 1022772 Changes: btllib (1.4.10+dfsg-1) unstable; urgency=medium . * Exclude 32bit architectures since upstream confirmed these are not supported. Closes: #1022772 * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: ed1c7be546189bd5dc5510e5ee9583548ed429a6 2388684 btllib-tools-dbgsym_1.4.10+dfsg-1_amd64.deb 19cc49181a4ebaffa81984beb106d2b067103a6e 159192 btllib-tools_1.4.10+dfsg-1_amd64.deb 733fa2c1ffdc1acc1723f8abc8a3ede6766f08f9 7260 btllib_1.4.10+dfsg-1_amd64.buildinfo 69a264f641b51feeb0d8be9c572a3445ddaa1afc 195676 libbtllib-dev_1.4.10+dfsg-1_amd64.deb Checksums-Sha256: 848da9a77369a62d45a9675f9ccdbc6d4ef117129d5a8042ce73e9d9dd660227 2388684 btllib-tools-dbgsym_1.4.10+dfsg-1_amd64.deb 9f13100aea7ea71c2ba082fdb4c307f35d2ceaeea0cd14ac2c8eb24be30b1fc2 159192 btllib-tools_1.4.10+dfsg-1_amd64.deb 32fc283410e8e269321920bb67af21d7f78a8781eca100cdeb06a62d88a745b9 7260 btllib_1.4.10+dfsg-1_amd64.buildinfo a34b2c5436d6ec716f9a80f4b6744d309e2d96229d88e27f5ac580e38968fea6 195676 libbtllib-dev_1.4.10+dfsg-1_amd64.deb Files: 9ef7f110fe1b337b21d001d8d9604702 2388684 debug optional btllib-tools-dbgsym_1.4.10+dfsg-1_amd64.deb e91ea96eb019f65eb4bda3c8de55bf6e 159192 science optional btllib-tools_1.4.10+dfsg-1_amd64.deb ab5d329516220af38ad789433eb8e934 7260 science optional btllib_1.4.10+dfsg-1_amd64.buildinfo 87b2bd90c55202742a3fbd7608093fef 195676 libdevel optional libbtllib-dev_1.4.10+dfsg-1_amd64.deb Sun Apr 28 02:07:48 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_38-6884.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.q2b3q0Vj/btllib_1.4.10+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.q2b3q0Vj/btllib_1.4.10+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.q2b3q0Vj/btllib_1.4.10+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.q2b3q0Vj/b1/btllib_1.4.10+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.q2b3q0Vj/b2/btllib_1.4.10+dfsg-1_amd64.changes ## close_archive (total time: 0.001s) 0.000s 26 calls diffoscope.comparators.xz.XzContainer 0.000s 18 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 8 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer ## command (total time: 189.827s) 93.212s 1023 calls readelf 86.297s 119 calls diff 8.669s 143 calls objdump 0.659s 2 calls objcopy 0.652s 26 calls xz 0.195s 22 calls strings 0.116s 11 calls nm 0.012s 5 calls cmp 0.012s 5 calls cmp (external) 0.004s 42 calls cmp (internal) ## compare_files (cumulative) (total time: 534.066s) 103.787s 1 call abc.DotChangesFile 103.760s 3 calls abc.DebFile 103.655s 6 calls abc.XzFile 103.137s 3 calls abc.DebDataTarFile 102.150s 2 calls abc.ElfFile 15.419s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.879s 37 calls diffoscope.comparators.elf.ElfSection 0.583s 3 calls diffoscope.comparators.elf.ElfStringSection 0.539s 1 call abc.ArFile 0.104s 3 calls abc.TarFile 0.019s 1 call abc.TextFile 0.019s 3 calls abc.Md5sumsFile 0.015s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 0.786s) 0.653s 26 calls diffoscope.comparators.xz.XzContainer 0.059s 62 calls diffoscope.comparators.deb.DebTarContainer 0.043s 32 calls diffoscope.comparators.deb.DebContainer 0.016s 36 calls diffoscope.comparators.ar.ArContainer 0.015s 24 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 6.987s) 6.987s 1011 calls linediff ## has_same_content_as (total time: 0.021s) 0.013s 20 calls abc.ElfFile 0.003s 3 calls abc.DebDataTarFile 0.001s 6 calls abc.TextFile 0.001s 6 calls abc.Md5sumsFile 0.001s 6 calls abc.XzFile 0.001s 3 calls abc.TarFile 0.000s 37 calls diffoscope.comparators.elf.ElfSection 0.000s 3 calls abc.DebFile 0.000s 1 call abc.ArFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 168.641s) 168.640s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 26 calls diffoscope.comparators.xz.XzContainer 0.000s 18 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 8 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer ## output (total time: 64.446s) 57.035s 1 call html 4.164s 1 call text 3.247s 1 call json ## recognizes (total time: 0.634s) 0.334s 1160 calls diffoscope.comparators.utils.archive.ArchiveMember 0.226s 3504 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.046s 12 calls diffoscope.comparators.binary.FilesystemFile 0.027s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.204s) 0.204s 101 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 2min 49.033s CPU time consumed: 3min 20.467s Sun Apr 28 02:10:38 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sun Apr 28 02:10:38 UTC 2024 E: btllib failed to build reproducibly in unstable on amd64. Sun Apr 28 02:12:04 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Apr 28 02:12:04 UTC 2024 I: Submitting 8.0K b1/btllib_1.4.10+dfsg-1_amd64.buildinfo.asc Sun Apr 28 02:12:06 UTC 2024 I: Submitting 8.0K b2/btllib_1.4.10+dfsg-1_amd64.buildinfo.asc Sun Apr 28 02:12:08 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 28 02:12:08 UTC 2024 I: Done submitting .buildinfo files. Sun Apr 28 02:12:08 UTC 2024 I: Removing signed btllib_1.4.10+dfsg-1_amd64.buildinfo.asc files: removed './b1/btllib_1.4.10+dfsg-1_amd64.buildinfo.asc' removed './b2/btllib_1.4.10+dfsg-1_amd64.buildinfo.asc'