Mon May 6 23:42:23 UTC 2024 I: starting to build cdbfasta/unstable/amd64 on jenkins on '2024-05-06 23:42' Mon May 6 23:42:23 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/10071/console.log Mon May 6 23:42:23 UTC 2024 I: Downloading source for unstable/cdbfasta=1.00+git20230710.da8f5ba+dfsg-1 --2024-05-06 23:42:23-- http://deb.debian.org/debian/pool/main/c/cdbfasta/cdbfasta_1.00%2bgit20230710.da8f5ba%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2217 (2.2K) [text/prs.lines.tag] Saving to: ‘cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.dsc’ 0K .. 100% 306M=0s 2024-05-06 23:42:23 (306 MB/s) - ‘cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.dsc’ saved [2217/2217] Mon May 6 23:42:23 UTC 2024 I: cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: cdbfasta Binary: cdbfasta Architecture: any Version: 1.00+git20230710.da8f5ba+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: https://github.com/gpertea/cdbfasta Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/cdbfasta Vcs-Git: https://salsa.debian.org/med-team/cdbfasta.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, pkg-config, libgclib-dev, help2man Package-List: cdbfasta deb science optional arch=any Checksums-Sha1: a27f1c79dcbc8a1fd538ee7270c9cc8e33317dc8 22816 cdbfasta_1.00+git20230710.da8f5ba+dfsg.orig.tar.xz a2648a7e4a4f25a1e2021e3ad72e2ec8db60f150 101696 cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.debian.tar.xz Checksums-Sha256: 22aeb9ca42d4a895b8bb7be2f4ab82af25b8981afe708c19673b00eb98cab719 22816 cdbfasta_1.00+git20230710.da8f5ba+dfsg.orig.tar.xz 9686d9a733ad4e590cd1bf0fb41fe1df0c765bfb570056d02d10c3dc415d7dae 101696 cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.debian.tar.xz Files: 38b908d9261d727cda835a2d3d8be12e 22816 cdbfasta_1.00+git20230710.da8f5ba+dfsg.orig.tar.xz c2c641d4431733119a898dc5a7b0a378 101696 cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVktggRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEnQQ//TehLT6JmDQDOWM+n/vLJj6KGJi7u+Nc7 uBtHnmBXJysM6sJjW/0mRRd4+WWorjbh9eROLl4sP0SV8Ea5/VaR1oasm7ZtrIdG i16JVOJAMKQd6M5StVfAVNXqVfTYSVeQBbDjgCEbN2B/mbi+pL65vmvGGQyXwjT8 LwJrfsaC7+bwkd3SvOpZEpQQMa/ALwKcS4MPLY0UwK4HH7t+N2mdeny8oSHKfybM I5axVdySOGrG2na7Qrl4eC0tPIvkiCwHWP70XQuRQf9FTLaETCpuIRwO5kL73iB1 bZLVYqxjpc2egUy5LHP7T443bH+umBueczGdjpQbyHJ+hufyNyDLzUz1JNWNEC6+ f+Wr/3yoA2mkUTt/hLlkiR7gmGhrV+zdY72AMjCSsZDoeFH/JFXAVVOGmw8XydeN 1/6ZZVDB8kZSEfSSVO+TpwI8z7Jz4Z77qrFBPRA16mdfqz5nJyTmUdrMSbMxbmUU zSBc0AnngQtPZIlaH2fRoLWYcsh3qC0fZ9Hiw5EXrm7YhObZZG1vZbY5GbEhTIhN 3UVHxY/onMmtfQIm19YTteE3XcorLCkSJLWojAzPOC7GBrybsUvFQRuLa5xLBxhs U+carORosz8k60+0yMQTNS0UqQTXGZZloyd3MhGAf/KnQXG5vdKx3NNoDVUNdn/t qNpuSnc9UeQ= =WVee -----END PGP SIGNATURE----- Mon May 6 23:42:23 UTC 2024 I: Checking whether the package is not for us Mon May 6 23:42:23 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Mon May 6 23:42:23 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Mon May 6 23:43:03 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 6 11:42:25 -12 2024 I: pbuilder-time-stamp: 1715038945 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.dsc] I: copying [./cdbfasta_1.00+git20230710.da8f5ba+dfsg.orig.tar.xz] I: copying [./cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 27 15:30:16 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting cdbfasta in cdbfasta-1.00+git20230710.da8f5ba+dfsg dpkg-source: info: unpacking cdbfasta_1.00+git20230710.da8f5ba+dfsg.orig.tar.xz dpkg-source: info: unpacking cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying workaround-lintian-false-positive dpkg-source: info: applying hardening.patch dpkg-source: info: applying use_debian_packaged_gclib.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3298166/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f274401800924c68a0483bf9d9725e42' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3298166' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sybFgmTc/pbuilderrc_gADS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sybFgmTc/b1 --logfile b1/build.log cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-20-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 6 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3298166/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, pkg-config, libgclib-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libgclib-dev; however: Package libgclib-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgclib-dev{a} libgclib3{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpkgconf3{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 20.7 MB of archives. After unpacking 77.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libgclib3 amd64 0.12.7+ds-5+b1 [154 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libgclib-dev amd64 0.12.7+ds-5+b1 [279 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 20.7 MB in 0s (84.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package help2man. Preparing to unpack .../31-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libgclib3:amd64. Preparing to unpack .../32-libgclib3_0.12.7+ds-5+b1_amd64.deb ... Unpacking libgclib3:amd64 (0.12.7+ds-5+b1) ... Selecting previously unselected package libgclib-dev:amd64. Preparing to unpack .../33-libgclib-dev_0.12.7+ds-5+b1_amd64.deb ... Unpacking libgclib-dev:amd64 (0.12.7+ds-5+b1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../34-libpkgconf3_1.8.1-1+b2_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1+b2) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../35-pkgconf-bin_1.8.1-1+b2_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1+b2) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../36-pkgconf_1.8.1-1+b2_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1+b2) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../37-pkg-config_1.8.1-1+b2_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1+b2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../38-zlib1g-dev_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up autopoint (0.21-14) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up libgclib3:amd64 (0.12.7+ds-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libgclib-dev:amd64 (0.12.7+ds-5+b1) ... Setting up pkgconf:amd64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:amd64 (1.8.1-1+b2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_source.changes dpkg-buildpackage: info: source package cdbfasta dpkg-buildpackage: info: source version 1.00+git20230710.da8f5ba+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' make[1]: Leaving directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' dh_auto_build -- LINKER="x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now" make -j12 "INSTALL=install --strip-program=true" "LINKER=x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' g++ -O2 -g -DNDEBUG -Wall `pkg-config --cflags libgclib` -DENABLE_COMPRESSION=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -fno-exceptions -fno-rtti -fno-strict-aliasing -D_REENTRANT -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cdbfasta.cpp -o cdbfasta.o g++ -O2 -g -DNDEBUG -Wall `pkg-config --cflags libgclib` -DENABLE_COMPRESSION=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -fno-exceptions -fno-rtti -fno-strict-aliasing -D_REENTRANT -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gcdbz.cpp -o gcdbz.o g++ -O2 -g -DNDEBUG -Wall `pkg-config --cflags libgclib` -DENABLE_COMPRESSION=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -fno-exceptions -fno-rtti -fno-strict-aliasing -D_REENTRANT -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c cdbyank.cpp -o cdbyank.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cdbyank.cpp: In function 'int fetch_record(char*, char*, int, int, int)': cdbyank.cpp:256:31: warning: ignoring return value of 'ssize_t read(int, void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 256 | read(fdb, &c, 1); | ~~~~^~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -o cdbyank cdbyank.o gcdbz.o `pkg-config --libs libgclib` -lz -Wl,-z,relro -Wl,-z,now x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -o cdbfasta cdbfasta.o gcdbz.o `pkg-config --libs libgclib` -lz -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' make[1]: Leaving directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/cdbfasta/ dh_install dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' help2man --no-info --no-discard-stderr --version-option=-v ./cdbfasta |\ sed 's/^Invalid argument:.*//' |\ sed 's/manual page for cdbfasta version .*/Creates an index file for records from a multi-fasta file./' \ > /build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg/debian/`dh_listpackages`/usr/share/man/man1/cdbfasta.1 help2man --no-info --no-discard-stderr --version-option=-v ./cdbyank |\ sed 's/^Invalid argument:.*//' |\ sed 's/manual page for cdbyank version .*/Query an index file created with cdbfasta./' \ > /build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg/debian/`dh_listpackages`/usr/share/man/man1/cdbyank.1 make[1]: Leaving directory '/build/reproducible-path/cdbfasta-1.00+git20230710.da8f5ba+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'cdbfasta-dbgsym' in '../cdbfasta-dbgsym_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb'. dpkg-deb: building package 'cdbfasta' in '../cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3298166 and its subdirectories I: Current time: Mon May 6 11:43:02 -12 2024 I: pbuilder-time-stamp: 1715038982 Mon May 6 23:43:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Mon May 6 23:43:04 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Mon May 6 23:44:40 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Mon May 6 23:44:41 UTC 2024 I: cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.changes: Format: 1.8 Date: Mon, 27 Nov 2023 16:25:27 +0100 Source: cdbfasta Binary: cdbfasta cdbfasta-dbgsym Architecture: amd64 Version: 1.00+git20230710.da8f5ba+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: cdbfasta - Constant DataBase indexing and retrieval tools for multi-FASTA fi Changes: cdbfasta (1.00+git20230710.da8f5ba+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: 460b985484ad5c441cc2a96d846e66582c966ee7 79448 cdbfasta-dbgsym_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb 19d0026f2ddc116b10d9c33592c97f5a2878b16c 5590 cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo 4e813e7f435dcb44fd7ffe4e3ed107814cd62a78 128448 cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb Checksums-Sha256: bd9a6184f73484f231b6ab1b39ee9fd58ae656fd3cd3021ad90f8d3b7eb8618b 79448 cdbfasta-dbgsym_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb e909544c1b863340d4549661b2963605acf0e679a44cf0de15299cb517b781d3 5590 cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo f2c9e92b720a5f6a23c4517dbcdb0d02b5df9db65875231639ccce5befe2b730 128448 cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb Files: 657e77630a8663b598aeb0e1faa19a2b 79448 debug optional cdbfasta-dbgsym_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb 5c5ce12ee2239966ce7394b27720e5f8 5590 science optional cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo 1641fe8ccd615232397612a442f06ba8 128448 science optional cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.deb Mon May 6 23:44:42 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_37-10071.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.sybFgmTc/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.sybFgmTc/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.sybFgmTc/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.sybFgmTc/b1/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.sybFgmTc/b2/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.386s) 0.386s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 752ms CPU time consumed: 750ms Mon May 6 23:44:43 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon May 6 23:44:43 UTC 2024 I: cdbfasta from unstable built successfully and reproducibly on amd64. Mon May 6 23:44:44 UTC 2024 I: Submitting .buildinfo files to external archives: Mon May 6 23:44:44 UTC 2024 I: Submitting 8.0K b1/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo.asc Mon May 6 23:44:45 UTC 2024 I: Submitting 8.0K b2/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo.asc Mon May 6 23:44:46 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 6 23:44:46 UTC 2024 I: Done submitting .buildinfo files. Mon May 6 23:44:46 UTC 2024 I: Removing signed cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo.asc files: removed './b1/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo.asc' removed './b2/cdbfasta_1.00+git20230710.da8f5ba+dfsg-1_amd64.buildinfo.asc'