Thu May 16 20:40:28 UTC 2024 I: starting to build filtlong/unstable/amd64 on jenkins on '2024-05-16 20:40' Thu May 16 20:40:28 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_35/10954/console.log Thu May 16 20:40:28 UTC 2024 I: Downloading source for unstable/filtlong=0.2.1-4 --2024-05-16 20:40:28-- http://deb.debian.org/debian/pool/main/f/filtlong/filtlong_0.2.1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2183 (2.1K) [text/prs.lines.tag] Saving to: ‘filtlong_0.2.1-4.dsc’ 0K .. 100% 308M=0s 2024-05-16 20:40:28 (308 MB/s) - ‘filtlong_0.2.1-4.dsc’ saved [2183/2183] Thu May 16 20:40:28 UTC 2024 I: filtlong_0.2.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: filtlong Binary: filtlong, filtlong-data Architecture: any all Version: 0.2.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rrwick/Filtlong Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/filtlong Vcs-Git: https://salsa.debian.org/med-team/filtlong.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, python3-markdown, python3 Package-List: filtlong deb science optional arch=any filtlong-data deb science optional arch=all Checksums-Sha1: 22c738634d0b1d08d0123ddbe019436fc40486d9 3008548 filtlong_0.2.1.orig.tar.gz 2b707ac8f1bb5eaeef7316a748cd2f1e76cacfed 6876 filtlong_0.2.1-4.debian.tar.xz Checksums-Sha256: e6f47675e87f98cf2481a60bef5cad38396f1e4db653a5c1673139f37770273a 3008548 filtlong_0.2.1.orig.tar.gz e9f0ae075e5b720c275c9f5100078b383572812ab7701c4a9145f3a83cbef9bb 6876 filtlong_0.2.1-4.debian.tar.xz Files: d712423c2331da269bda5c56333f3097 3008548 filtlong_0.2.1.orig.tar.gz b5ab0f227cd06a3a6e34109579786ba7 6876 filtlong_0.2.1-4.debian.tar.xz Dgit: 0ba49305cabbb630cc9e2d281a1f669a6cc72e4f debian archive/debian/0.2.1-4 https://git.dgit.debian.org/filtlong -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTX2PAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo0bg/8DHeIv6Goi2Txf/ele+NKCY960wxf J8nHhaez/TlPFCMuOfZVFR9PSltLV9NTijctgqspE0f3g5TT+2Bd5cw26FP6v88V yUXbv3B2F4XxdO4T4oT+QYJn5jsqfeEaE8cr/AIOgQvy7LdExD4X46lutKeh2Q+b Vor2oudUgGEb/tJZAimTV3hoMa8TsxKyEDjUXCn2+ucFJHbBPzlAsRQasAf4x9th zTPwF56pT2lf8k4m4RuoioutVXeUPDn5r9ppF5j+mbGs972KNzePC/IaoREjjMqz E7kUoh3xkrJfAdb5eOHuVGVR6Lk8KtpCyU63Mk01wSf9VYkzrsLW0SpqYrcFrRAI y1hPfJekDib9FgSuURuY9LhZfTgTEDs5kFZFS08PqzMIBhfIktdbEcol3YKwpqKx Z6A01F7+a6jcNgFkJdNDZCP6GxnwCjoO+L9ItsYzCF0K7Ys8mm25Q6KnActnCMNH H1QETY6C9jEMg0haQ0cFrGkWYra83/46h5v9CWekxrS08NXEY/GrRq1pbnIAr1gs mUmmpyTTtEYVLd8X1dZ6IJllsiu80tByYV1tL467yE19yvHhNDS85NSpClKPDKFe jYicSTYC+6HQjSd0kSq9jDa1CejgHmYrGrwbezAZfeAQvRnpf+QKwaGjsFmz7FS6 /yAKysqth6glnLA= =BxRw -----END PGP SIGNATURE----- Thu May 16 20:40:29 UTC 2024 I: Checking whether the package is not for us Thu May 16 20:40:29 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Thu May 16 20:40:29 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Thu May 16 20:41:43 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 16 08:40:30 -12 2024 I: pbuilder-time-stamp: 1715892030 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [filtlong_0.2.1-4.dsc] I: copying [./filtlong_0.2.1.orig.tar.gz] I: copying [./filtlong_0.2.1-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Aug 12 19:09:36 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./filtlong_0.2.1-4.dsc: no acceptable signature found dpkg-source: info: extracting filtlong in filtlong-0.2.1 dpkg-source: info: unpacking filtlong_0.2.1.orig.tar.gz dpkg-source: info: unpacking filtlong_0.2.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_locales_in_test_output.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1379126/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1f627006716b457f94e8aa516794ef93' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1379126' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rhqlO8YQ/pbuilderrc_TwTj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rhqlO8YQ/b1 --logfile b1/build.log filtlong_0.2.1-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 16 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1379126/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, python3-markdown, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19701 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-importlib-metadata{a} python3-markdown{a} python3-minimal{a} python3-more-itertools{a} python3-typing-extensions{a} python3-zipp{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments python3-yaml wget 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 26.0 MB of archives. After unpacking 100 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-1 [94.1 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 python3-markdown all 3.6-1 [84.0 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Fetched 26.0 MB in 0s (73.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19701 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20017 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21009 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.1-1_amd64.deb ... Unpacking bsdextrautils (2.40.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu May 16 20:40:56 UTC 2024. Universal Time is now: Thu May 16 20:40:56 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-markdown (3.6-1) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-importlib-metadata (4.12.0-1) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/filtlong-0.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../filtlong_0.2.1-4_source.changes dpkg-buildpackage: info: source package filtlong dpkg-buildpackage: info: source version 0.2.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/filtlong-0.2.1' rm -f src/misc.o src/read.o src/arguments.o src/kmers.o src/main.o rm -f bin/filtlong make[1]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/filtlong-0.2.1' dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/filtlong-0.2.1' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/misc.o src/misc.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/read.o src/read.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/arguments.o src/arguments.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/kmers.o src/kmers.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o src/main.o src/main.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/filtlong-0.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o bin/filtlong src/misc.o src/read.o src/arguments.o src/kmers.o src/main.o -lz -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' markdown_py -f README.html README.md make[1]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/filtlong-0.2.1' python3 -m unittest .................................................................... ---------------------------------------------------------------------- Ran 68 tests in 27.422s OK find test -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/filtlong-0.2.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'filtlong' in '../filtlong_0.2.1-4_amd64.deb'. dpkg-deb: building package 'filtlong-dbgsym' in '../filtlong-dbgsym_0.2.1-4_amd64.deb'. dpkg-deb: building package 'filtlong-data' in '../filtlong-data_0.2.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../filtlong_0.2.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../filtlong_0.2.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1379126 and its subdirectories I: Current time: Thu May 16 08:41:42 -12 2024 I: pbuilder-time-stamp: 1715892102 Thu May 16 20:41:44 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Thu May 16 20:41:44 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Thu May 16 20:43:30 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Thu May 16 20:43:31 UTC 2024 I: filtlong_0.2.1-4_amd64.changes: Format: 1.8 Date: Sat, 12 Aug 2023 20:45:37 +0200 Source: filtlong Binary: filtlong filtlong-data filtlong-dbgsym Architecture: all amd64 Version: 0.2.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: filtlong - quality filtering tool for long reads of genome sequences filtlong-data - quality filtering tool for long reads of genome sequences (testda Closes: 1037655 Changes: filtlong (0.2.1-4) unstable; urgency=medium . * Team upload. * gcc-13.patch: new: fix ftbfs with gcc-13. (Closes: #1037655) * hardening.patch: declare forwarding not-needed. * hardening.patch: also propagate preprocessor flags. * d/control: declare compliance to standards version 4.6.2 Checksums-Sha1: 7aa8143458b7fe59443a7a6b441adebd296fd2f1 1913120 filtlong-data_0.2.1-4_all.deb 752a53eb02f035bb595e46ec24f8d473445509b5 815960 filtlong-dbgsym_0.2.1-4_amd64.deb 2c3993cf45a11253eb9b140345586768b55cf703 5930 filtlong_0.2.1-4_amd64.buildinfo d26fc4addbffb489d290ae8606048b0afb99136f 2938620 filtlong_0.2.1-4_amd64.deb Checksums-Sha256: 213667e1c4bc89c0d3b70d500f2bed759b8acb1a90f426cea3495043716ad887 1913120 filtlong-data_0.2.1-4_all.deb c782a104c5fb21a5e5afbf8dcf5b45e5ae3628317995cd0dfa05d7a95ac7005d 815960 filtlong-dbgsym_0.2.1-4_amd64.deb 053ca5ad08abf8395da03eb30ec94a2273f7acc403d0af3d57d30e31ac130b50 5930 filtlong_0.2.1-4_amd64.buildinfo 1a9a0f40416efab6a301f13cff4ce8a67572495e4d8942dfd6f042356de03964 2938620 filtlong_0.2.1-4_amd64.deb Files: a06f03ea076cbafd7ad245a3b2bfc5a0 1913120 science optional filtlong-data_0.2.1-4_all.deb feec67d3020d6311dd199b42102e0e46 815960 debug optional filtlong-dbgsym_0.2.1-4_amd64.deb 4eb91513ce63a037ed0e033e4ef15f38 5930 science optional filtlong_0.2.1-4_amd64.buildinfo 1d36c51da9b208527cc0b240fdb86e7f 2938620 science optional filtlong_0.2.1-4_amd64.deb Thu May 16 20:43:32 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_35-10954.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rhqlO8YQ/filtlong_0.2.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rhqlO8YQ/filtlong_0.2.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rhqlO8YQ/filtlong_0.2.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rhqlO8YQ/b1/filtlong_0.2.1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.rhqlO8YQ/b2/filtlong_0.2.1-4_amd64.changes ## close_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 73.168s) 36.367s 1056 calls readelf 31.893s 125 calls diff 3.744s 198 calls objdump 0.700s 60 calls xz 0.375s 2 calls objcopy 0.077s 22 calls strings 0.006s 1 call cmp 0.006s 1 call cmp (external) 0.002s 18 calls cmp (internal) ## compare_files (cumulative) (total time: 200.436s) 39.250s 1 call abc.DotChangesFile 39.204s 2 calls abc.DebFile 39.118s 4 calls abc.XzFile 38.372s 2 calls abc.DebDataTarFile 38.137s 2 calls abc.ElfFile 5.175s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.645s 35 calls diffoscope.comparators.elf.ElfSection 0.417s 3 calls diffoscope.comparators.elf.ElfStringSection 0.072s 2 calls abc.TarFile 0.017s 1 call abc.TextFile 0.015s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.014s 2 calls abc.Md5sumsFile ## container_extract (total time: 0.813s) 0.696s 20 calls diffoscope.comparators.xz.XzContainer 0.057s 24 calls diffoscope.comparators.deb.DebContainer 0.049s 64 calls diffoscope.comparators.deb.DebTarContainer 0.011s 18 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 9.298s) 9.298s 616 calls linediff ## has_same_content_as (total time: 0.010s) 0.006s 3 calls abc.DebFile 0.001s 4 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.DebDataTarFile 0.000s 35 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.TarFile 0.000s 2 calls abc.ElfFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 102.858s) 102.857s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 63.129s) 61.075s 1 call html 1.285s 1 call text 0.769s 1 call json ## recognizes (total time: 0.413s) 0.161s 1808 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.123s 900 calls diffoscope.comparators.utils.archive.ArchiveMember 0.078s 12 calls diffoscope.comparators.binary.FilesystemFile 0.050s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.114s) 0.114s 72 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 1min 43.233s CPU time consumed: 1min 54.420s Thu May 16 20:45:17 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Thu May 16 20:45:17 UTC 2024 E: filtlong failed to build reproducibly in unstable on amd64. Thu May 16 20:45:43 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 16 20:45:43 UTC 2024 I: Submitting 8.0K b1/filtlong_0.2.1-4_amd64.buildinfo.asc Thu May 16 20:45:44 UTC 2024 I: Submitting 8.0K b2/filtlong_0.2.1-4_amd64.buildinfo.asc Thu May 16 20:45:45 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 16 20:45:45 UTC 2024 I: Done submitting .buildinfo files. Thu May 16 20:45:45 UTC 2024 I: Removing signed filtlong_0.2.1-4_amd64.buildinfo.asc files: removed './b1/filtlong_0.2.1-4_amd64.buildinfo.asc' removed './b2/filtlong_0.2.1-4_amd64.buildinfo.asc'