Wed May 8 08:22:32 UTC 2024 I: starting to build pairtools/unstable/amd64 on jenkins on '2024-05-08 08:22' Wed May 8 08:22:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/11374/console.log Wed May 8 08:22:32 UTC 2024 I: Downloading source for unstable/pairtools=1.0.3-1 --2024-05-08 08:22:33-- http://deb.debian.org/debian/pool/main/p/pairtools/pairtools_1.0.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2382 (2.3K) [text/prs.lines.tag] Saving to: ‘pairtools_1.0.3-1.dsc’ 0K .. 100% 325M=0s 2024-05-08 08:22:33 (325 MB/s) - ‘pairtools_1.0.3-1.dsc’ saved [2382/2382] Wed May 8 08:22:33 UTC 2024 I: pairtools_1.0.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pairtools Binary: python3-pairtools, python3-pairtools-examples Architecture: any Version: 1.0.3-1 Maintainer: Debian Med Packaging Team Uploaders: Antoni Villalonga Homepage: https://github.com/mirnylab/pairtools Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pairtools Vcs-Git: https://salsa.debian.org/med-team/pairtools.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, cython3, python3-setuptools, python3-bioframe, python3-click, python3-exceptiongroup, python3-numpy, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-pytest , python3-scipy, libhts-dev, python3-yaml Package-List: python3-pairtools deb python optional arch=any python3-pairtools-examples deb python optional arch=any Checksums-Sha1: a741d0b8d93ff8703371347ec2667d095061e1cd 1254538 pairtools_1.0.3.orig.tar.gz e0b40d63dc0f0828b0a7944d96fcf51e12edb2b1 7084 pairtools_1.0.3-1.debian.tar.xz Checksums-Sha256: ef32885fb4c7cbf05b57434df303ba6f84c60f2200aaa43dddc08493735dc555 1254538 pairtools_1.0.3.orig.tar.gz fe5722549fdd0ce5b346a30e721cce2b2649e7b94ec2e6ac8e7cd35c8a9995ae 7084 pairtools_1.0.3-1.debian.tar.xz Files: efbc84583dc040e29d89ade8011af32b 1254538 pairtools_1.0.3.orig.tar.gz f939bf4581a15151d20bed08c2063855 7084 pairtools_1.0.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmV3IGsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE3pw//Una5L+ojt6PH6ABYP3/Nb+u5C8tr0m2Z 3+mMSe8fszKD9wJkZqvSyTkWyjE2WEAMpdNQ5lNa8+7/gcVMaYOUH8VvNIYlawYu OmANbTE09pv9S1WVhdq4EQVfMiHRvK/d30L/4/YJjo0/EFKuYMrARUo/VhpNdnvV C0S/g3vsxsjhfxYVAIlQS6GXCIIonuXdBtuErOl5M71hTbXxgQsQcjxIaPneUsqB LFvoEJWMU07g5vFxysmtU/jm3CwbcLcsnsLzHGIVqEiLZpvbCYul7ado5s2DaBYT lvWn2mgg7KOFbn8oDjOrzGHUbmyRFH7yA7WFONKCE0ETIHWobgiG1h5UZrV7aolg VEYgiH3+A7k/eYum69TxAWJ9anVWbviWGZaN/eyEZpsXdN2zCmY4ARlJpGws/M/q YyLb/PN2ta8R8GHVz3SePO4uW//2SE+xKgXH+eXz35XwDcWy5nk0BUZgE46QQgkJ Ip1vEAb0rrTMX7Iind3rbUHgCZk9JzxqGkxdjQhKoXqS0hSeHLjuszxiCVejsJE+ BCiUoZT/IfljuJ1DR5N3b2WUgkiPx2sAaGB8dhDS1QPmM+LB/TM9JgmKIxtMbbAw kAs7vVOnm1p4WBVr7t0BZqMildzeOirmQ5UJ3oaQdFRuhydbxYp7kBC/Mz7awDvS LnQJPAM1VP0= =d4i+ -----END PGP SIGNATURE----- Wed May 8 08:22:33 UTC 2024 I: Checking whether the package is not for us Wed May 8 08:22:33 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Wed May 8 08:22:33 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Wed May 8 08:29:14 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 7 20:22:35 -12 2024 I: pbuilder-time-stamp: 1715156555 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pairtools_1.0.3-1.dsc] I: copying [./pairtools_1.0.3.orig.tar.gz] I: copying [./pairtools_1.0.3-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 11 14:44:59 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pairtools_1.0.3-1.dsc: no acceptable signature found dpkg-source: info: extracting pairtools in pairtools-1.0.3 dpkg-source: info: unpacking pairtools_1.0.3.orig.tar.gz dpkg-source: info: unpacking pairtools_1.0.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying fix-spelling dpkg-source: info: applying tests-to-python3 dpkg-source: info: applying fix-pysam-ftbfs.patch dpkg-source: info: applying do-not-run-coverage.patch dpkg-source: info: applying no_install_depends_cython.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2555286/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b7361edce9c8411b9e6aeb4298583626' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2555286' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.q5euMumd/pbuilderrc_D1ZJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.q5euMumd/b1 --logfile b1/build.log pairtools_1.0.3-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 8 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2555286/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, cython3, python3-setuptools, python3-bioframe, python3-click, python3-exceptiongroup, python3-numpy, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-pytest, python3-scipy, libhts-dev, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-bioframe; however: Package python3-bioframe is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-exceptiongroup; however: Package python3-exceptiongroup is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam (>= 0.20.0+ds-3~); however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-bioframe{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-exceptiongroup{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-iniconfig{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 146 MB of archives. After unpacking 668 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.10+dfsg-5 [3571 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 63 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 82 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.7.1-5 [433 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.7.1-5 [538 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.20-1 [54.5 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14-20240429-1 [836 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.0-10 [1483 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libhts-dev amd64 1.19+ds-1.1+b1 [1667 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.3-1 [2107 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.3-1 [5069 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.11.8-1 [1072 B] Get: 125 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.3-1 [499 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.11.8-1 [1072 B] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.12.3-1 [109 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.12-7 [3869 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [7882 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.6-2 [37.0 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 python3-bioframe all 0.4.1-1 [71.6 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-exceptiongroup all 1.2.1-1 [19.6 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 180 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.22.0+ds-1+b2 [4646 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.1.2-1 [246 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Fetched 146 MB in 1s (102 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20015 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21007 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. 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Setting up libhtscodecs2:amd64 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up liblcms2-2:amd64 (2.14-2+b1) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libpython3.12-minimal:amd64 (3.12.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:amd64 (1.1.35-1+b1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-5) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl4-gnutls-dev:amd64 (8.7.1-5) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:amd64 (3.12.3-1) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libpython3-dev:amd64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up libhts-dev:amd64 (1.19+ds-1.1+b1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:amd64 (3.12.3-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... 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Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up python3-bioframe (0.4.1-1) ... Processing triggers for libc-bin (2.38-8) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pairtools-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pairtools_1.0.3-1_source.changes dpkg-buildpackage: info: source package pairtools dpkg-buildpackage: info: source version 1.0.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with numpy3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pairtools-1.0.3' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx because it changed. [1/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx running clean removing '/build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f pairtools/lib/*.c pairtools/lib/regions.cpp make[1]: Leaving directory '/build/reproducible-path/pairtools-1.0.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with numpy3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx because it changed. [1/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools copying pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools copying pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools copying pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli running build_ext building 'pairtools.lib.parse_pysam' extension creating build creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/build creating build/temp.linux-x86_64-cpython-312/build/reproducible-path creating build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3 creating build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools creating build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.c -o build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-312-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-312-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-312-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-312-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-312-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-312-x86_64-linux-gnu.so building 'pairtools.lib.dedup_cython' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c -o build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-x86_64-linux-gnu.so building 'pairtools.lib.regions' extension x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp -o build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp:1302: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-x86_64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools copying pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools copying pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools copying pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli running build_ext building 'pairtools.lib.parse_pysam' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/build creating build/temp.linux-x86_64-cpython-311/build/reproducible-path creating build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3 creating build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools creating build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.c -o build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/parse_pysam.cpython-311-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-311-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-311-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-311-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-311-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-311-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-311-x86_64-linux-gnu.so building 'pairtools.lib.dedup_cython' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c -o build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/dedup_cython.cpython-311-x86_64-linux-gnu.so building 'pairtools.lib.regions' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp -o build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp:1302: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pairtools-1.0.3' dh_auto_test -- --system=custom --test-args="export CURPY={interpreter}; \ cd {build_dir} && {interpreter} -m pytest -v" I: pybuild base:311: export CURPY=python3.12; cd /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build && python3.12 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.1.2, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build configfile: pytest.ini testpaths: tests collecting ... collected 31 items tests/test_dedup.py::test_mock_pairsam PASSED [ 3%] tests/test_filterbycov.py::test_mock_pairs PASSED [ 6%] tests/test_flip.py::test_flip PASSED [ 9%] tests/test_header.py::test_generate PASSED [ 12%] tests/test_headerops.py::test_make_standard_header PASSED [ 16%] tests/test_headerops.py::test_samheaderops PASSED [ 19%] tests/test_headerops.py::test_merge_pairheaders PASSED [ 22%] tests/test_headerops.py::test_merge_different_pairheaders PASSED [ 25%] tests/test_headerops.py::test_force_merge_pairheaders PASSED [ 29%] tests/test_headerops.py::test_merge_samheaders PASSED [ 32%] tests/test_headerops.py::test_merge_headers PASSED [ 35%] tests/test_markasdup.py::test_mock_pairsam PASSED [ 38%] tests/test_merge.py::test_mock_pairsam PASSED [ 41%] tests/test_parse.py::test_python_version PASSED [ 45%] tests/test_parse.py::test_mock_pysam PASSED [ 48%] tests/test_parse.py::test_mock_pysam_parse_all PASSED [ 51%] tests/test_parse2.py::test_mock_pysam_parse2_read PASSED [ 54%] tests/test_parse2.py::test_mock_pysam_parse2_pair PASSED [ 58%] tests/test_restrict.py::test_restrict PASSED [ 61%] tests/test_scaling.py::test_scaling PASSED [ 64%] tests/test_select.py::test_preserve PASSED [ 67%] tests/test_select.py::test_equal PASSED [ 70%] tests/test_select.py::test_csv PASSED [ 74%] tests/test_select.py::test_wildcard PASSED [ 77%] tests/test_select.py::test_regex PASSED [ 80%] tests/test_select.py::test_chrom_subset PASSED [ 83%] tests/test_select.py::test_remove_columns PASSED [ 87%] tests/test_sort.py::test_mock_pairsam PASSED [ 90%] tests/test_split.py::test_split PASSED [ 93%] tests/test_stats.py::test_mock_pairsam PASSED [ 96%] tests/test_stats.py::test_merge_stats PASSED [100%] =============================== warnings summary =============================== pairtools/lib/fileio.py:2 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/fileio.py:2: DeprecationWarning: 'pipes' is deprecated and slated for removal in Python 3.13 import pipes pairtools/lib/stats.py:928 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/stats.py:928: SyntaxWarning: invalid escape sequence '\w' """Extract the name of the tile for each read name in the series -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 31 passed, 2 warnings in 44.99s ======================== I: pybuild base:311: export CURPY=python3.11; cd /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build && python3.11 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.2, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build configfile: pytest.ini testpaths: tests collecting ... collected 31 items tests/test_dedup.py::test_mock_pairsam PASSED [ 3%] tests/test_filterbycov.py::test_mock_pairs PASSED [ 6%] tests/test_flip.py::test_flip PASSED [ 9%] tests/test_header.py::test_generate PASSED [ 12%] tests/test_headerops.py::test_make_standard_header PASSED [ 16%] tests/test_headerops.py::test_samheaderops PASSED [ 19%] tests/test_headerops.py::test_merge_pairheaders PASSED [ 22%] tests/test_headerops.py::test_merge_different_pairheaders PASSED [ 25%] tests/test_headerops.py::test_force_merge_pairheaders PASSED [ 29%] tests/test_headerops.py::test_merge_samheaders PASSED [ 32%] tests/test_headerops.py::test_merge_headers PASSED [ 35%] tests/test_markasdup.py::test_mock_pairsam PASSED [ 38%] tests/test_merge.py::test_mock_pairsam PASSED [ 41%] tests/test_parse.py::test_python_version PASSED [ 45%] tests/test_parse.py::test_mock_pysam PASSED [ 48%] tests/test_parse.py::test_mock_pysam_parse_all PASSED [ 51%] tests/test_parse2.py::test_mock_pysam_parse2_read PASSED [ 54%] tests/test_parse2.py::test_mock_pysam_parse2_pair PASSED [ 58%] tests/test_restrict.py::test_restrict PASSED [ 61%] tests/test_scaling.py::test_scaling PASSED [ 64%] tests/test_select.py::test_preserve PASSED [ 67%] tests/test_select.py::test_equal PASSED [ 70%] tests/test_select.py::test_csv PASSED [ 74%] tests/test_select.py::test_wildcard PASSED [ 77%] tests/test_select.py::test_regex PASSED [ 80%] tests/test_select.py::test_chrom_subset PASSED [ 83%] tests/test_select.py::test_remove_columns PASSED [ 87%] tests/test_sort.py::test_mock_pairsam PASSED [ 90%] tests/test_split.py::test_split PASSED [ 93%] tests/test_stats.py::test_mock_pairsam PASSED [ 96%] tests/test_stats.py::test_merge_stats PASSED [100%] =============================== warnings summary =============================== pairtools/lib/fileio.py:2 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/fileio.py:2: DeprecationWarning: 'pipes' is deprecated and slated for removal in Python 3.13 import pipes pairtools/lib/stats.py:928 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/stats.py:928: DeprecationWarning: invalid escape sequence '\w' """Extract the name of the tile for each read name in the series -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 31 passed, 2 warnings in 47.56s ======================== make[1]: Leaving directory '/build/reproducible-path/pairtools-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12 creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.merged_mixed.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.merged_no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/.gitignore -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/README.md -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/restrict.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/headerops.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/fileio.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pairsam_format.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/scaling.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse2.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/restrict.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sort.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/header.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/split.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sample.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/markasdup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/scaling.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/flip.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__pycache__/_logging.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__pycache__/__main__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.merged_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/dedup.py to dedup.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/phase.py to phase.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/filterbycov.py to filterbycov.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/scaling.py to scaling.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/headerops.py to headerops.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/fileio.py to fileio.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/stats.py to stats.cpython-312.pyc /usr/lib/python3.12/dist-packages/pairtools/lib/stats.py:928: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/select.py to select.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/restrict.py to restrict.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/_logging.py to _logging.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/dedup.py to dedup.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/parse2.py to parse2.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/phase.py to phase.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/split.py to split.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/filterbycov.py to filterbycov.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/scaling.py to scaling.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sample.py to sample.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sort.py to sort.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/stats.py to stats.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/select.py to select.cpython-312.pyc /usr/lib/python3.12/dist-packages/pairtools/cli/select.py:90: SyntaxWarning: invalid escape sequence '\d' byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/merge.py to merge.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/header.py to header.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/restrict.py to restrict.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/flip.py to flip.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating pairtools.egg-info writing pairtools.egg-info/PKG-INFO writing dependency_links to pairtools.egg-info/dependency_links.txt writing entry points to pairtools.egg-info/entry_points.txt writing requirements to pairtools.egg-info/requires.txt writing top-level names to pairtools.egg-info/top_level.txt writing manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_build' no previously-included directories found matching 'doc/_templates' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pairtools.egg-info/SOURCES.txt' Copying pairtools.egg-info to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools-1.0.3.egg-info Skipping SOURCES.txt running install_scripts Installing pairtools script to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11 creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.merged_mixed.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.merged_no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/.gitignore -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/README.md -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/parse_pysam.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/dedup_cython.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/fileio.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/filterbycov.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/headerops.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/select.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/stats.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/restrict.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/phase.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/parse.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/pairsam_format.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/scaling.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/dedup.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/header.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/merge.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/filterbycov.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/split.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sort.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/select.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/stats.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sample.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/restrict.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/phase.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/flip.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse2.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/scaling.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/dedup.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/markasdup.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__pycache__/_logging.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__pycache__/__main__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.merged_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/dedup.py to dedup.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/phase.py to phase.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/filterbycov.py to filterbycov.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/scaling.py to scaling.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/parse.py to parse.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/headerops.py to headerops.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/fileio.py to fileio.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/stats.py to stats.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/select.py to select.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/restrict.py to restrict.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/_logging.py to _logging.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/dedup.py to dedup.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse2.py to parse2.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/phase.py to phase.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/split.py to split.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/filterbycov.py to filterbycov.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/scaling.py to scaling.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse.py to parse.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sample.py to sample.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sort.py to sort.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/stats.py to stats.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/select.py to select.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/merge.py to merge.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/header.py to header.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/restrict.py to restrict.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/flip.py to flip.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing pairtools.egg-info/PKG-INFO writing dependency_links to pairtools.egg-info/dependency_links.txt writing entry points to pairtools.egg-info/entry_points.txt writing requirements to pairtools.egg-info/requires.txt writing top-level names to pairtools.egg-info/top_level.txt reading manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_build' no previously-included directories found matching 'doc/_templates' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pairtools.egg-info/SOURCES.txt' Copying pairtools.egg-info to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools-1.0.3.egg-info Skipping SOURCES.txt running install_scripts Installing pairtools script to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/bin debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pairtools-1.0.3' find debian/ -name '*.stats' -delete make[1]: Leaving directory '/build/reproducible-path/pairtools-1.0.3' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_numpy3 -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-pairtools-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairtools-examples: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pairtools' in '../python3-pairtools_1.0.3-1_amd64.deb'. dpkg-deb: building package 'python3-pairtools-dbgsym' in '../python3-pairtools-dbgsym_1.0.3-1_amd64.deb'. dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.0.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pairtools_1.0.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pairtools_1.0.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2555286 and its subdirectories I: Current time: Tue May 7 20:29:13 -12 2024 I: pbuilder-time-stamp: 1715156953 Wed May 8 08:29:15 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Wed May 8 08:29:15 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Wed May 8 08:34:57 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Wed May 8 08:34:58 UTC 2024 I: pairtools_1.0.3-1_amd64.changes: Format: 1.8 Date: Mon, 11 Dec 2023 15:32:05 +0100 Source: pairtools Binary: python3-pairtools python3-pairtools-dbgsym python3-pairtools-examples Architecture: amd64 Version: 1.0.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-pairtools - Framework to process sequencing data from a Hi-C experiment python3-pairtools-examples - Process sequencing data from a Hi-C experiment (examples) Closes: 1057997 Changes: pairtools (1.0.3-1) unstable; urgency=medium . * Team upload. * New upstream version * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * No runtime dependency from cython Closes: #1057997 Checksums-Sha1: 19073913d7b3de94542b85a9cbd32ad1dc634b32 10484 pairtools_1.0.3-1_amd64.buildinfo 988fabb1c844a235af9635980b18f52c8cf06f36 1436448 python3-pairtools-dbgsym_1.0.3-1_amd64.deb 4e4cbe264efa96768549a997384e54a56d91d199 808976 python3-pairtools-examples_1.0.3-1_amd64.deb c07219b5ea912d393c5eb6f2cc618eda9412e045 273188 python3-pairtools_1.0.3-1_amd64.deb Checksums-Sha256: ee58179283c8ab7821db426156bed6f8acc8aa8e5a7c956d9a0d32c113c73444 10484 pairtools_1.0.3-1_amd64.buildinfo 734568f019870bb8695b1495a691c78068d3816fc5dac0c1bb5c05a05a3b2d64 1436448 python3-pairtools-dbgsym_1.0.3-1_amd64.deb d114b668ee61236939893662c4ff9cf84744907082e4a1556248858cf8dec896 808976 python3-pairtools-examples_1.0.3-1_amd64.deb 894fc35075dde4a31f3caf5ad827a73542865febcda9b7161cd0c3050bed3e4a 273188 python3-pairtools_1.0.3-1_amd64.deb Files: c59b850b7d8e6fa9e58eba990b87487a 10484 python optional pairtools_1.0.3-1_amd64.buildinfo 142b62b5c5eb0bd8f885df886bd9f605 1436448 debug optional python3-pairtools-dbgsym_1.0.3-1_amd64.deb 3ee445c66d5c76bef93f5d535dcf4b9a 808976 python optional python3-pairtools-examples_1.0.3-1_amd64.deb 465c93010127cc70b535d37f9ce48416 273188 python optional python3-pairtools_1.0.3-1_amd64.deb Wed May 8 08:34:59 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-11374.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.q5euMumd/pairtools_1.0.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.q5euMumd/pairtools_1.0.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.q5euMumd/pairtools_1.0.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.q5euMumd/b1/pairtools_1.0.3-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.q5euMumd/b2/pairtools_1.0.3-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.388s) 0.388s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.044s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 722ms CPU time consumed: 715ms Wed May 8 08:35:00 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 08:35:00 UTC 2024 I: pairtools from unstable built successfully and reproducibly on amd64. Wed May 8 08:35:02 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 08:35:02 UTC 2024 I: Submitting 12K b1/pairtools_1.0.3-1_amd64.buildinfo.asc Wed May 8 08:35:03 UTC 2024 I: Submitting 12K b2/pairtools_1.0.3-1_amd64.buildinfo.asc Wed May 8 08:35:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 08:35:04 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 08:35:04 UTC 2024 I: Removing signed pairtools_1.0.3-1_amd64.buildinfo.asc files: removed './b1/pairtools_1.0.3-1_amd64.buildinfo.asc' removed './b2/pairtools_1.0.3-1_amd64.buildinfo.asc'