Sun Apr 28 03:25:00 UTC 2024 I: starting to build pdb-tools/unstable/amd64 on jenkins on '2024-04-28 03:24' Sun Apr 28 03:25:00 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_1/4020/console.log Sun Apr 28 03:25:00 UTC 2024 I: Downloading source for unstable/pdb-tools=2.5.1-1 --2024-04-28 03:25:01-- http://deb.debian.org/debian/pool/main/p/pdb-tools/pdb-tools_2.5.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2170 (2.1K) [text/prs.lines.tag] Saving to: ‘pdb-tools_2.5.1-1.dsc’ 0K .. 100% 302M=0s 2024-04-28 03:25:01 (302 MB/s) - ‘pdb-tools_2.5.1-1.dsc’ saved [2170/2170] Sun Apr 28 03:25:01 UTC 2024 I: pdb-tools_2.5.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pdb-tools Binary: pdb-tools, python3-pdbtools Architecture: all Version: 2.5.1-1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://www.bonvinlab.org/pdb-tools/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/pdb-tools Vcs-Git: https://salsa.debian.org/debichem-team/pdb-tools.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, expect-dev , help2man, python3-all, python3-setuptools Package-List: pdb-tools deb science optional arch=all python3-pdbtools deb science optional arch=all Checksums-Sha1: 4d8ec4edc49dbf176525ab0b2fd0c50f6a7d60e8 182264 pdb-tools_2.5.1.orig.tar.gz d2aa9b54b7416f82ef556f32d00df5467e5736db 2608 pdb-tools_2.5.1-1.debian.tar.xz Checksums-Sha256: cf73da2a670a2a59f6b3e8c11ea1b796cf0dec520aba92fb83fba00f84cf38fb 182264 pdb-tools_2.5.1.orig.tar.gz 0067093d7d1ef211c667bc99f97df66f09c7fe64c20c917b809fce37f241adda 2608 pdb-tools_2.5.1-1.debian.tar.xz Files: c90a841fd3a78df4d8280223742dac4a 182264 pdb-tools_2.5.1.orig.tar.gz e485c3a7efbfb71844a1e41d994fec8f 2608 pdb-tools_2.5.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmWAO/QSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHZGwQAJxV481/mXhgEmkPXR0vMV1Q7LEfHE0N Uyl4CKzh3CiKxfH6zwFNddaGXTpmIdGpNVPlcDZVmsqm0/qD1/PdDw5nhWAfE2jK WgijgYF7Dm0tIlNPj2qp+7Z9ejt4WD5vbzzlJRHRoocTN24S71Uw5+dir/T7HIed Yt7Q7mB/NRUgEi7ygXP1SVQR379LgX9DPlyxalg3y7iBwQac8b0pYg0zM0j7aakz pd2DaoNyluKCzLvNxyonYIgVzGAgATyn7x6kg8D8lUgxKqrrSoqtqWbioOSpfRAk KF+P8LaL+IUsS9Xj6Xhu+c7ZWxeLO6JXpF5Qw4KeSx+LSfIirbcMKBvn9X7Cn3D6 I/DUq7Ak341S0w5jw9/6i0aaycbcEjsc8War9w149NDqXsJkamSchmCNGFD4PqRt XXgNoQ863hiF9ah6dvwp+y+VgvG0T6eElp7k2Nw4noiWXy2djOlbcPdhNwLjyepB L8hSVZ7v3QghYVUorjuNFQjNCHriqrRCQRldn1iuTGE/KeuohB0P2MM8hNSALpSg VezauerW3L52ar6JSKfP11k/MWryx4k7hYjN394jNXwV6lyf/CE8F0Yz/f6+MdY1 TFrE497zRCOVjlAbZAW8S+WlGIs/CGQ5pvpFpAPt9xATjwY8wjAATtObJoBW8WBh WEwffPg0gWDa =g3b6 -----END PGP SIGNATURE----- Sun Apr 28 03:25:01 UTC 2024 I: Checking whether the package is not for us Sun Apr 28 03:25:01 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sun Apr 28 03:25:01 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sun Apr 28 03:29:47 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 27 15:25:03 -12 2024 I: pbuilder-time-stamp: 1714274703 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pdb-tools_2.5.1-1.dsc] I: copying [./pdb-tools_2.5.1.orig.tar.gz] I: copying [./pdb-tools_2.5.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 12:32:52 2023 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pdb-tools_2.5.1-1.dsc: no acceptable signature found dpkg-source: info: extracting pdb-tools in pdb-tools-2.5.1 dpkg-source: info: unpacking pdb-tools_2.5.1.orig.tar.gz dpkg-source: info: unpacking pdb-tools_2.5.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4135917/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6cff6bd089544c7aa410e8b378291549' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4135917' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VbIuP5hP/pbuilderrc_2Sy9 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VbIuP5hP/b1 --logfile b1/build.log pdb-tools_2.5.1-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 27 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4135917/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, expect-dev, help2man, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on expect-dev; however: Package expect-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} expect{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtcl8.6{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tcl-expect{a} tcl8.6{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After unpacking 132 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 tcl8.6 amd64 8.6.14+dfsg-1 [120 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 tcl-expect amd64 5.45.4-3 [127 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 expect amd64 5.45.4-3 [158 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.11.8-1 [1056 B] Fetched 33.1 MB in 2s (15.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20027 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21019 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. 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Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up tcl8.6 (8.6.14+dfsg-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up tcl-expect:amd64 (5.45.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up expect (5.45.4-3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.8-1) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pdb-tools-2.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pdb-tools_2.5.1-1_source.changes dpkg-buildpackage: info: source package pdb-tools dpkg-buildpackage: info: source version 2.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem pybuild --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pdb-tools-2.5.1' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf pdb_tools.egg-info make[1]: Leaving directory '/build/reproducible-path/pdb-tools-2.5.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild --with python3 dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_fetch.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools copying pdbtools/pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools creating /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/config.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/utils.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests copying tests/test_pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_fetch.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools copying pdbtools/pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools creating /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/config.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/utils.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests copying tests/test_pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pdb-tools-2.5.1' unbuffer dh_auto_test I: pybuild base:311: python3.12 setup.py test running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. /usr/lib/python3/dist-packages/setuptools/command/test.py:193: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! ir_d = dist.fetch_build_eggs(dist.install_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! tr_d = dist.fetch_build_eggs(dist.tests_require or []) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! er_d = dist.fetch_build_eggs( WARNING: The wheel package is not available. running egg_info creating pdb_tools.egg-info writing pdb_tools.egg-info/PKG-INFO writing dependency_links to pdb_tools.egg-info/dependency_links.txt writing entry points to pdb_tools.egg-info/entry_points.txt writing top-level names to pdb_tools.egg-info/top_level.txt writing manifest file 'pdb_tools.egg-info/SOURCES.txt' reading manifest file 'pdb_tools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' warning: no previously-included files found matching 'CONTRIBUTING.md' warning: no previously-included files found matching 'PACKING.md' warning: no previously-included files found matching 'tox.ini' no previously-included directories found matching 'docs' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '*.swp' found anywhere in distribution warning: no previously-included files matching 'tags' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pdb_tools.egg-info/SOURCES.txt' running build_ext test_default (test_pdb_b.TestTool.test_default) $ pdb_b data/dummy.pdb ... ok test_file_missing (test_pdb_b.TestTool.test_file_missing) $ pdb_b -10 ... ok test_file_not_found (test_pdb_b.TestTool.test_file_not_found) $ pdb_b not_existing.pdb ... ok test_helptext (test_pdb_b.TestTool.test_helptext) $ pdb_b ... ok test_invalid_option (test_pdb_b.TestTool.test_invalid_option) $ pdb_b -A data/dummy.pdb ... ok test_not_an_option (test_pdb_b.TestTool.test_not_an_option) $ pdb_b 20 data/dummy.pdb ... ok test_two_options (test_pdb_b.TestTool.test_two_options) $ pdb_b -20 data/dummy.pdb ... ok test_default (test_pdb_chain.TestTool.test_default) $ pdb_chain data/dummy.pdb ... ok test_file_missing (test_pdb_chain.TestTool.test_file_missing) $ pdb_chain -A ... ok test_file_not_found (test_pdb_chain.TestTool.test_file_not_found) $ pdb_chain -A not_existing.pdb ... ok test_helptext (test_pdb_chain.TestTool.test_helptext) $ pdb_chain ... ok test_invalid_option (test_pdb_chain.TestTool.test_invalid_option) $ pdb_chain -AH data/dummy.pdb ... ok test_not_an_option (test_pdb_chain.TestTool.test_not_an_option) $ pdb_chain A data/dummy.pdb ... ok test_two_options (test_pdb_chain.TestTool.test_two_options) $ pdb_chain -X data/dummy.pdb ... ok test_default (test_pdb_chainbows.TestTool.test_default) $ pdb_chainbows data/dummy.pdb ... ok test_file_not_found (test_pdb_chainbows.TestTool.test_file_not_found) $ pdb_chainbows not_existing.pdb ... ok test_helptext (test_pdb_chainbows.TestTool.test_helptext) $ pdb_chainbows ... ok test_invalid_option (test_pdb_chainbows.TestTool.test_invalid_option) $ pdb_chainbows -A data/dummy.pdb ... ok test_default (test_pdb_chainxseg.TestTool.test_default) $ pdb_chainxseg data/dummy.pdb ... ok test_file_not_found (test_pdb_chainxseg.TestTool.test_file_not_found) $ pdb_chainxseg not_existing.pdb ... ok test_helptext (test_pdb_chainxseg.TestTool.test_helptext) $ pdb_chainxseg ... ok test_invalid_option (test_pdb_chainxseg.TestTool.test_invalid_option) $ pdb_chainxseg -A data/dummy.pdb ... ok test_ensemble_diffatom (test_pdb_chkensemble.TestTool.test_ensemble_diffatom) $ pdb_chkensemble data/ensemble_error_1.pdb ... ok test_ensemble_noendmdl (test_pdb_chkensemble.TestTool.test_ensemble_noendmdl) $ pdb_chkensemble data/ensemble_error_3.pdb ... ok test_ensemble_noendmdl2 (test_pdb_chkensemble.TestTool.test_ensemble_noendmdl2) $ pdb_chkensemble data/ensemble_error_4.pdb ... ok test_ensemble_nomodel (test_pdb_chkensemble.TestTool.test_ensemble_nomodel) $ pdb_chkensemble data/ensemble_error_2.pdb ... ok test_file_not_found (test_pdb_chkensemble.TestTool.test_file_not_found) $ pdb_chkensemble not_existing.pdb ... ok test_helptext (test_pdb_chkensemble.TestTool.test_helptext) $ pdb_chkensemble ... ok test_invalid_option (test_pdb_chkensemble.TestTool.test_invalid_option) $ pdb_chkensemble -A data/dummy.pdb ... ok test_valid_ensemble (test_pdb_chkensemble.TestTool.test_valid_ensemble) $ pdb_chkensemble data/ensemble_OK.pdb ... ok test_default (test_pdb_delchain.TestTool.test_default) $ pdb_delchain -A data/dummy.pdb ... ok test_file_missing (test_pdb_delchain.TestTool.test_file_missing) $ pdb_delchain -A ... ok test_file_not_found (test_pdb_delchain.TestTool.test_file_not_found) $ pdb_delchain not_existing.pdb ... ok test_helptext (test_pdb_delchain.TestTool.test_helptext) $ pdb_delchain ... ok test_invalid_option (test_pdb_delchain.TestTool.test_invalid_option) $ pdb_delchain data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_delchain.TestTool.test_invalid_option_2) $ pdb_delchain -AB data/dummy.pdb ... ok test_multiple (test_pdb_delchain.TestTool.test_multiple) $ pdb_delchain -A,B data/dummy.pdb ... ok test_not_an_option (test_pdb_delchain.TestTool.test_not_an_option) $ pdb_delchain 20 data/dummy.pdb ... ok test_default (test_pdb_delelem.TestTool.test_default) $ pdb_delelem -H data/dummy.pdb ... ok test_file_missing (test_pdb_delelem.TestTool.test_file_missing) $ pdb_delelem -A ... ok test_file_not_found (test_pdb_delelem.TestTool.test_file_not_found) $ pdb_delelem not_existing.pdb ... ok test_helptext (test_pdb_delelem.TestTool.test_helptext) $ pdb_delelem ... ok test_invalid_option (test_pdb_delelem.TestTool.test_invalid_option) $ pdb_delelem data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_delelem.TestTool.test_invalid_option_2) $ pdb_delelem -ABD data/dummy.pdb ... ok test_multiple (test_pdb_delelem.TestTool.test_multiple) $ pdb_delelem -C,H data/dummy.pdb ... ok test_not_an_option (test_pdb_delelem.TestTool.test_not_an_option) $ pdb_delelem 20 data/dummy.pdb ... ok test_default (test_pdb_delhetatm.TestTool.test_default) $ pdb_delhetatm data/dummy.pdb ... ok test_file_not_found (test_pdb_delhetatm.TestTool.test_file_not_found) $ pdb_delhetatm not_existing.pdb ... ok test_helptext (test_pdb_delhetatm.TestTool.test_helptext) $ pdb_delhetatm ... ok test_invalid_option (test_pdb_delhetatm.TestTool.test_invalid_option) $ pdb_delhetatm -A data/dummy.pdb ... ok test_default (test_pdb_delinsertion.TestTool.test_default) $ pdb_fixinsert data/dummy_insertions.pdb ... ok test_file_missing (test_pdb_delinsertion.TestTool.test_file_missing) $ pdb_fixinsert -A89 ... ok test_file_not_found (test_pdb_delinsertion.TestTool.test_file_not_found) $ pdb_fixinsert not_existing.pdb ... ok test_invalid_option (test_pdb_delinsertion.TestTool.test_invalid_option) $ pdb_fixinsert -A data/dummy_insertions.pdb ... ok test_invalid_option_2 (test_pdb_delinsertion.TestTool.test_invalid_option_2) $ pdb_fixinsert -12A data/dummy_insertions.pdb ... ok test_not_an_option (test_pdb_delinsertion.TestTool.test_not_an_option) $ pdb_fixinsert 20 data/dummy_insertions.pdb ... ok test_select_insertion (test_pdb_delinsertion.TestTool.test_select_insertion) $ pdb_fixinsert -A1 data/dummy_insertions.pdb ... ok test_file_missing (test_pdb_delres.TestTool.test_file_missing) $ pdb_delres -1:10 ... ok test_file_not_found (test_pdb_delres.TestTool.test_file_not_found) $ pdb_delres not_existing.pdb ... ok test_helptext (test_pdb_delres.TestTool.test_helptext) $ pdb_delres ... ok test_invalid_option (test_pdb_delres.TestTool.test_invalid_option) $ pdb_delres -A:B data/dummy.pdb ... ok test_invalid_range_1 (test_pdb_delres.TestTool.test_invalid_range_1) $ pdb_delres --9998:: data/dummy.pdb ... ok test_invalid_range_2 (test_pdb_delres.TestTool.test_invalid_range_2) $ pdb_delres -:10000: data/dummy.pdb ... ok test_invalid_range_3 (test_pdb_delres.TestTool.test_invalid_range_3) $ pdb_delres -::: data/dummy.pdb ... ok test_invalid_range_4 (test_pdb_delres.TestTool.test_invalid_range_4) $ pdb_delres -5:1:: data/dummy.pdb ... ok test_not_an_option (test_pdb_delres.TestTool.test_not_an_option) $ pdb_delres 20 data/dummy.pdb ... ok test_range_1 (test_pdb_delres.TestTool.test_range_1) $ pdb_delres -1:5 data/dummy.pdb ... ok test_range_2 (test_pdb_delres.TestTool.test_range_2) $ pdb_delres -1: data/dummy.pdb ... ok test_range_3 (test_pdb_delres.TestTool.test_range_3) $ pdb_delres -:-1 data/dummy.pdb ... ok test_range_4 (test_pdb_delres.TestTool.test_range_4) $ pdb_delres -::5 data/dummy.pdb ... ok test_empty_sele (test_pdb_delresname.TestTool.test_empty_sele) $ pdb_delresname - data/dummy.pdb ... ok test_file_missing (test_pdb_delresname.TestTool.test_file_missing) $ pdb_delresname -ARG ... ok test_file_not_found (test_pdb_delresname.TestTool.test_file_not_found) $ pdb_delresname not_existing.pdb ... ok test_helptext (test_pdb_delresname.TestTool.test_helptext) $ pdb_delresname ... ok test_invalid_sele (test_pdb_delresname.TestTool.test_invalid_sele) $ pdb_delresname -ABCD data/dummy.pdb ... ok test_multiple_sele (test_pdb_delresname.TestTool.test_multiple_sele) $ pdb_delresname -ARG,CA data/dummy.pdb ... ok test_not_an_option (test_pdb_delresname.TestTool.test_not_an_option) $ pdb_delresname 20 data/dummy.pdb ... ok test_single_sele (test_pdb_delresname.TestTool.test_single_sele) $ pdb_delresname -ARG data/dummy.pdb ... ok test_default (test_pdb_element.TestTool.test_default) $ pdb_element data/dummy.pdb ... ok test_file_not_found (test_pdb_element.TestTool.test_file_not_found) $ pdb_element not_existing.pdb ... ok test_helptext (test_pdb_element.TestTool.test_helptext) $ pdb_element ... ok test_invalid_option (test_pdb_element.TestTool.test_invalid_option) $ pdb_element -A data/dummy.pdb ... ok test_default (test_pdb_fixinsert.TestTool.test_default) $ pdb_fixinsert data/dummy_insertions.pdb ... ok test_file_missing (test_pdb_fixinsert.TestTool.test_file_missing) $ pdb_fixinsert -A89 ... ok test_file_not_found (test_pdb_fixinsert.TestTool.test_file_not_found) $ pdb_fixinsert not_existing.pdb ... ok test_helptext (test_pdb_fixinsert.TestTool.test_helptext) $ pdb_fixinsert ... ok test_invalid_option (test_pdb_fixinsert.TestTool.test_invalid_option) $ pdb_fixinsert -A data/dummy_insertions.pdb ... ok test_invalid_option_2 (test_pdb_fixinsert.TestTool.test_invalid_option_2) $ pdb_fixinsert -12A data/dummy_insertions.pdb ... ok test_not_an_option (test_pdb_fixinsert.TestTool.test_not_an_option) $ pdb_fixinsert 20 data/dummy_insertions.pdb ... ok test_select_insertion (test_pdb_fixinsert.TestTool.test_select_insertion) $ pdb_fixinsert -A1 data/dummy_insertions.pdb ... ok test_conversion (test_pdb_fromcif.TestTool.test_conversion) $ pdb_fromcif data/ensemble_OK.pdb ... ok test_file_not_found (test_pdb_fromcif.TestTool.test_file_not_found) $ pdb_fromcif not_existing.pdb ... ok test_helptext (test_pdb_fromcif.TestTool.test_helptext) $ pdb_fromcif ... ok test_invalid_option (test_pdb_fromcif.TestTool.test_invalid_option) $ pdb_fromcif -A data/dummy.pdb ... ok test_default (test_pdb_gap.TestTool.test_default) $ pdb_gap data/dummy.pdb ... ok test_file_not_found (test_pdb_gap.TestTool.test_file_not_found) $ pdb_gap not_existing.pdb ... ok test_helptext (test_pdb_gap.TestTool.test_helptext) $ pdb_gap ... ok test_invalid_option (test_pdb_gap.TestTool.test_invalid_option) $ pdb_gap -A data/dummy.pdb ... ok test_file_missing (test_pdb_head.TestTool.test_file_missing) $ pdb_head -10 ... ok test_file_not_found (test_pdb_head.TestTool.test_file_not_found) $ pdb_head not_existing.pdb ... ok test_helptext (test_pdb_head.TestTool.test_helptext) $ pdb_head ... ok test_invalid_option (test_pdb_head.TestTool.test_invalid_option) $ pdb_head --10 data/dummy.pdb ... ok test_not_an_option (test_pdb_head.TestTool.test_not_an_option) $ pdb_head 20 data/dummy.pdb ... ok test_valid_option (test_pdb_head.TestTool.test_valid_option) $ pdb_head -10 data/dummy.pdb ... ok test_default (test_pdb_intersect.TestTool.test_default) $ pdb_intersect data/dummy.pdb data/dummy.pdb ... ok test_file_not_found (test_pdb_intersect.TestTool.test_file_not_found) $ pdb_intersect not_existing.pdb ... ok test_helptext (test_pdb_intersect.TestTool.test_helptext) $ pdb_intersect ... ok test_default (test_pdb_keepcoord.TestTool.test_default) $ pdb_keepcoord data/dummy.pdb ... ok test_file_not_found (test_pdb_keepcoord.TestTool.test_file_not_found) $ pdb_keepcoord not_existing.pdb ... ok test_helptext (test_pdb_keepcoord.TestTool.test_helptext) $ pdb_keepcoord ... ok test_invalid_option (test_pdb_keepcoord.TestTool.test_invalid_option) $ pdb_keepcoord -A data/dummy.pdb ... ok test_default (test_pdb_merge.TestTool.test_default) $ pdb_merge data/dummy.pdb ... ok test_file_not_found (test_pdb_merge.TestTool.test_file_not_found) $ pdb_merge not_existing.pdb ... ok test_helptext (test_pdb_merge.TestTool.test_helptext) $ pdb_merge ... ok test_default (test_pdb_mkensemble.TestTool.test_default) $ pdb_mkensemble data/dummy.pdb ... ok test_default_multiple (test_pdb_mkensemble.TestTool.test_default_multiple) $ pdb_mkensemble data/dummy.pdb x20 ... ok test_file_not_found (test_pdb_mkensemble.TestTool.test_file_not_found) $ pdb_mkensemble not_existing.pdb ... ok test_helptext (test_pdb_mkensemble.TestTool.test_helptext) $ pdb_mkensemble ... ok test_default (test_pdb_occ.TestTool.test_default) $ pdb_occ data/dummy.pdb ... ok test_file_missing (test_pdb_occ.TestTool.test_file_missing) $ pdb_occ -1.0 ... ok test_file_not_found (test_pdb_occ.TestTool.test_file_not_found) $ pdb_occ not_existing.pdb ... ok test_helptext (test_pdb_occ.TestTool.test_helptext) $ pdb_occ ... ok test_invalid_option (test_pdb_occ.TestTool.test_invalid_option) $ pdb_occ -A data/dummy.pdb ... ok test_not_an_option (test_pdb_occ.TestTool.test_not_an_option) $ pdb_occ 20 data/dummy.pdb ... ok test_two_options (test_pdb_occ.TestTool.test_two_options) $ pdb_occ -0.5 data/dummy.pdb ... ok test_default (test_pdb_reatom.TestTool.test_default) $ pdb_reatom data/dummy.pdb ... ok test_file_missing (test_pdb_reatom.TestTool.test_file_missing) $ pdb_reatom -10 ... ok test_file_not_found (test_pdb_reatom.TestTool.test_file_not_found) $ pdb_reatom -10 not_existing.pdb ... ok test_helptext (test_pdb_reatom.TestTool.test_helptext) $ pdb_reatom ... ok test_invalid_option (test_pdb_reatom.TestTool.test_invalid_option) $ pdb_reatom -A data/dummy.pdb ... ok test_not_an_option (test_pdb_reatom.TestTool.test_not_an_option) $ pdb_reatom 11 data/dummy.pdb ... ok test_too_many_atoms (test_pdb_reatom.TestTool.test_too_many_atoms) $ pdb_reatom -99998 data/dummy.pdb ... ok test_two_options_neg (test_pdb_reatom.TestTool.test_two_options_neg) $ pdb_reatom --10 data/dummy.pdb ... ok test_two_options_pos (test_pdb_reatom.TestTool.test_two_options_pos) $ pdb_reatom -10 data/dummy.pdb ... ok test_default (test_pdb_reres.TestTool.test_default) $ pdb_reres data/dummy.pdb ... ok test_file_missing (test_pdb_reres.TestTool.test_file_missing) $ pdb_reres -10 ... ok test_file_not_found (test_pdb_reres.TestTool.test_file_not_found) $ pdb_reres -10 not_existing.pdb ... ok test_helptext (test_pdb_reres.TestTool.test_helptext) $ pdb_reres ... ok test_invalid_option (test_pdb_reres.TestTool.test_invalid_option) $ pdb_reres -A data/dummy.pdb ... ok test_not_an_option (test_pdb_reres.TestTool.test_not_an_option) $ pdb_reres 11 data/dummy.pdb ... ok test_three_with_models (test_pdb_reres.TestTool.test_three_with_models) $ pdb_reres -4 data/ensemble.OK.pdb ... ok test_three_with_single_res_models (test_pdb_reres.TestTool.test_three_with_single_res_models) $ pdb_reres -4 data/ensemble.OK.pdb ... ok test_too_many_residues (test_pdb_reres.TestTool.test_too_many_residues) $ pdb_reres -9998 data/dummy.pdb ... ok test_two_options_neg (test_pdb_reres.TestTool.test_two_options_neg) $ pdb_reres --10 data/dummy.pdb ... ok test_two_options_pos (test_pdb_reres.TestTool.test_two_options_pos) $ pdb_reres -10 data/dummy.pdb ... ok test_file_missing (test_pdb_rplchain.TestTool.test_file_missing) $ pdb_rplchain -A ... ok test_file_not_found (test_pdb_rplchain.TestTool.test_file_not_found) $ pdb_rplchain -A not_existing.pdb ... ok test_helptext (test_pdb_rplchain.TestTool.test_helptext) $ pdb_rplchain ... ok test_invalid_option_1 (test_pdb_rplchain.TestTool.test_invalid_option_1) $ pdb_rplchain -AH data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_rplchain.TestTool.test_invalid_option_2) $ pdb_rplchain -AH: data/dummy.pdb ... ok test_not_an_option (test_pdb_rplchain.TestTool.test_not_an_option) $ pdb_rplchain A data/dummy.pdb ... ok test_option_1 (test_pdb_rplchain.TestTool.test_option_1) $ pdb_rplchain -D:Z data/dummy.pdb ... ok test_option_2 (test_pdb_rplchain.TestTool.test_option_2) $ pdb_rplchain -A: data/dummy.pdb ... ok test_file_missing (test_pdb_rplresname.TestTool.test_file_missing) $ pdb_rplresname -DA ... ok test_file_not_found (test_pdb_rplresname.TestTool.test_file_not_found) $ pdb_rplresname -DA:DT not_existing.pdb ... ok test_helptext (test_pdb_rplresname.TestTool.test_helptext) $ pdb_rplresname ... ok test_invalid_option_1 (test_pdb_rplresname.TestTool.test_invalid_option_1) $ pdb_rplresname -HIS data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_rplresname.TestTool.test_invalid_option_2) $ pdb_rplresname -AH: data/dummy.pdb ... ok test_not_an_option (test_pdb_rplresname.TestTool.test_not_an_option) $ pdb_rplresname A data/dummy.pdb ... ok test_option_1 (test_pdb_rplresname.TestTool.test_option_1) $ pdb_rplresname -MET:DRG data/dummy.pdb ... ok test_option_2 (test_pdb_rplresname.TestTool.test_option_2) $ pdb_rplresname -DT:DA data/dummy.pdb ... ok test_default (test_pdb_seg.TestTool.test_default) $ pdb_seg data/dummy.pdb ... ok test_file_missing (test_pdb_seg.TestTool.test_file_missing) $ pdb_seg -A ... ok test_file_not_found (test_pdb_seg.TestTool.test_file_not_found) $ pdb_seg -A not_existing.pdb ... ok test_helptext (test_pdb_seg.TestTool.test_helptext) $ pdb_seg ... ok test_invalid_option (test_pdb_seg.TestTool.test_invalid_option) $ pdb_seg -AHASX data/dummy.pdb ... ok test_not_an_option (test_pdb_seg.TestTool.test_not_an_option) $ pdb_seg A data/dummy.pdb ... ok test_two_options (test_pdb_seg.TestTool.test_two_options) $ pdb_seg -X data/dummy.pdb ... ok test_default (test_pdb_segxchain.TestTool.test_default) $ pdb_segxchain data/dummy.pdb ... ok test_file_not_found (test_pdb_segxchain.TestTool.test_file_not_found) $ pdb_segxchain not_existing.pdb ... ok test_helptext (test_pdb_segxchain.TestTool.test_helptext) $ pdb_segxchain ... ok test_invalid_option (test_pdb_segxchain.TestTool.test_invalid_option) $ pdb_segxchain -A data/dummy.pdb ... ok test_all_same_residue (test_pdb_selaltloc.TestTool.test_all_same_residue) Test all same residue. ... ok test_all_same_residue_false (test_pdb_selaltloc.TestTool.test_all_same_residue_false) Test all same residue. ... ok test_anisou_lines (test_pdb_selaltloc.TestTool.test_anisou_lines) Test anisou.pdb is not altered because there are not altlocs. ... ok test_anisou_missing (test_pdb_selaltloc.TestTool.test_anisou_missing) Test raises error if there are missing anisou lines. ... ok test_anisou_with_altloc_maxocc (test_pdb_selaltloc.TestTool.test_anisou_with_altloc_maxocc) Test anisou_altloc.pdb properly selects the highest altloc. ... ok test_anisou_with_altloc_maxocc_A (test_pdb_selaltloc.TestTool.test_anisou_with_altloc_maxocc_A) Test anisou_altloc.pdb selects altloc -A. ... ok test_anisou_with_altloc_maxocc_B (test_pdb_selaltloc.TestTool.test_anisou_with_altloc_maxocc_B) Test anisou_altloc.pdb selects altloc -B. ... ok test_captures_previous_residue_maxocc (test_pdb_selaltloc.TestTool.test_captures_previous_residue_maxocc) Test the previous residue is not lost. ... ok test_captures_previous_residue_maxocc_A (test_pdb_selaltloc.TestTool.test_captures_previous_residue_maxocc_A) Test the previous residue is not lost. ... ok test_captures_previous_residue_maxocc_B (test_pdb_selaltloc.TestTool.test_captures_previous_residue_maxocc_B) Test the previous residue is not lost. ... ok test_default (test_pdb_selaltloc.TestTool.test_default) $ pdb_selaltloc data/dummy_altloc.pdb ... ok test_default2 (test_pdb_selaltloc.TestTool.test_default2) $ pdb_selaltloc data/dummy_altloc2.pdb ... ok test_file_missing (test_pdb_selaltloc.TestTool.test_file_missing) $ pdb_selaltloc -A ... ok test_file_not_found (test_pdb_selaltloc.TestTool.test_file_not_found) $ pdb_selaltloc not_existing.pdb ... ok test_gives_same_dummy_A (test_pdb_selaltloc.TestTool.test_gives_same_dummy_A) Test dummy.pdb is not altered because there are not altlocs. ... ok test_gives_same_dummy_B (test_pdb_selaltloc.TestTool.test_gives_same_dummy_B) Test dummy.pdb is not altered because there are not altlocs. ... ok test_gives_same_dummy_maxocc (test_pdb_selaltloc.TestTool.test_gives_same_dummy_maxocc) Test dummy.pdb is not altered because there are not altlocs. ... ok test_helptext (test_pdb_selaltloc.TestTool.test_helptext) $ pdb_selaltloc ... ok test_invalid_option (test_pdb_selaltloc.TestTool.test_invalid_option) $ pdb_selaltloc -AH data/dummy.pdb ... ok test_is_another_group_1 (test_pdb_selaltloc.TestTool.test_is_another_group_1) Test function to identify we entered another altloc group. ... ok test_is_another_group_2 (test_pdb_selaltloc.TestTool.test_is_another_group_2) Test function to identify we entered another altloc group. ... ok test_is_another_group_3 (test_pdb_selaltloc.TestTool.test_is_another_group_3) Test function to identify we entered another altloc group. ... ok test_is_another_group_4 (test_pdb_selaltloc.TestTool.test_is_another_group_4) Test function to identify we entered another altloc group. ... ok test_is_same_group_1 (test_pdb_selaltloc.TestTool.test_is_same_group_1) Test function to identify we entered another altloc group. ... ok test_is_same_group_2 (test_pdb_selaltloc.TestTool.test_is_same_group_2) Test function to identify we entered another altloc group. ... ok test_is_same_group_3 (test_pdb_selaltloc.TestTool.test_is_same_group_3) Test function to identify we entered another altloc group. ... ok test_is_same_group_4 (test_pdb_selaltloc.TestTool.test_is_same_group_4) Test function to identify we entered another altloc group. ... ok test_is_same_group_5 (test_pdb_selaltloc.TestTool.test_is_same_group_5) Test function to identify we entered another altloc group. ... ok test_not_an_option (test_pdb_selaltloc.TestTool.test_not_an_option) $ pdb_selaltloc 20 data/dummy.pdb ... ok test_partial_altloc (test_pdb_selaltloc.TestTool.test_partial_altloc) ... ok test_select_loc_A (test_pdb_selaltloc.TestTool.test_select_loc_A) $ pdb_selaltloc -A data/dummy_altloc.pdb ... ok test_select_loc_A_2 (test_pdb_selaltloc.TestTool.test_select_loc_A_2) $ pdb_selaltloc -A data/dummy_altloc2.pdb ... ok test_select_loc_B (test_pdb_selaltloc.TestTool.test_select_loc_B) $ pdb_selaltloc -B data/dummy_altloc.pdb ... ok test_select_loc_B_2 (test_pdb_selaltloc.TestTool.test_select_loc_B_2) $ pdb_selaltloc -B data/dummy_altloc2.pdb ... ok test_select_loc_C (test_pdb_selaltloc.TestTool.test_select_loc_C) $ pdb_selaltloc -C data/dummy_altloc.pdb ... ok test_select_loc_C_2 (test_pdb_selaltloc.TestTool.test_select_loc_C_2) $ pdb_selaltloc -C data/dummy_altloc2.pdb ... ok test_vu7_maxocc (test_pdb_selaltloc.TestTool.test_vu7_maxocc) Test vu7.pdb properly selects highest altloc. ... ok test_vu7_maxocc_A (test_pdb_selaltloc.TestTool.test_vu7_maxocc_A) Test vu7.pdb properly selects altloc A. ... ok test_vu7_maxocc_B (test_pdb_selaltloc.TestTool.test_vu7_maxocc_B) Test vu7.pdb properly selects altloc B. ... ok test_file_missing (test_pdb_selatom.TestTool.test_file_missing) $ pdb_selatom -CA ... ok test_file_not_found (test_pdb_selatom.TestTool.test_file_not_found) $ pdb_selatom not_existing.pdb ... ok test_helptext (test_pdb_selatom.TestTool.test_helptext) $ pdb_selatom ... ok test_invalid_option (test_pdb_selatom.TestTool.test_invalid_option) $ pdb_selatom data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selatom.TestTool.test_invalid_option_2) $ pdb_selatom -ABCDE data/dummy.pdb ... ok test_multiple (test_pdb_selatom.TestTool.test_multiple) $ pdb_selatom -CA,CB data/dummy.pdb ... ok test_not_an_option (test_pdb_selatom.TestTool.test_not_an_option) $ pdb_selatom 20 data/dummy.pdb ... ok test_one_option (test_pdb_selatom.TestTool.test_one_option) $ pdb_selatom -CA data/dummy.pdb ... ok test_file_missing (test_pdb_selchain.TestTool.test_file_missing) $ pdb_selchain -A ... ok test_file_not_found (test_pdb_selchain.TestTool.test_file_not_found) $ pdb_selchain not_existing.pdb ... ok test_helptext (test_pdb_selchain.TestTool.test_helptext) $ pdb_selchain ... ok test_invalid_option (test_pdb_selchain.TestTool.test_invalid_option) $ pdb_selchain data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selchain.TestTool.test_invalid_option_2) $ pdb_selchain -AB data/dummy.pdb ... ok test_multiple (test_pdb_selchain.TestTool.test_multiple) $ pdb_selchain -A,B data/dummy.pdb ... ok test_not_an_option (test_pdb_selchain.TestTool.test_not_an_option) $ pdb_selchain 20 data/dummy.pdb ... ok test_one_option (test_pdb_selchain.TestTool.test_one_option) $ pdb_selchain -A data/dummy.pdb ... ok test_one_option_CAPS_lowercase (test_pdb_selchain.TestTool.test_one_option_CAPS_lowercase) $ pdb_selchain -A data/dummy_az09.pdb ... ok test_one_option_digit (test_pdb_selchain.TestTool.test_one_option_digit) $ pdb_selchain -1 data/dummy_az09.pdb ... ok test_one_option_lowercase (test_pdb_selchain.TestTool.test_one_option_lowercase) $ pdb_selchain -b data/dummy_az09.pdb ... ok test_file_missing (test_pdb_selelem.TestTool.test_file_missing) $ pdb_selelem -C ... ok test_file_not_found (test_pdb_selelem.TestTool.test_file_not_found) $ pdb_selelem not_existing.pdb ... ok test_helptext (test_pdb_selelem.TestTool.test_helptext) $ pdb_selelem ... ok test_invalid_option (test_pdb_selelem.TestTool.test_invalid_option) $ pdb_selelem data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selelem.TestTool.test_invalid_option_2) $ pdb_selelem -ABC data/dummy.pdb ... ok test_multiple (test_pdb_selelem.TestTool.test_multiple) $ pdb_selelem -C,O data/dummy.pdb ... ok test_not_an_option (test_pdb_selelem.TestTool.test_not_an_option) $ pdb_selelem 20 data/dummy.pdb ... ok test_one_option (test_pdb_selelem.TestTool.test_one_option) $ pdb_selelem -C data/dummy.pdb ... ok test_default (test_pdb_selhetatm.TestTool.test_default) $ pdb_selhetatm data/dummy.pdb ... ok test_file_not_found (test_pdb_selhetatm.TestTool.test_file_not_found) $ pdb_selhetatm not_existing.pdb ... ok test_helptext (test_pdb_selhetatm.TestTool.test_helptext) $ pdb_selhetatm ... ok test_invalid_option (test_pdb_selhetatm.TestTool.test_invalid_option) $ pdb_selhetatm -A data/dummy.pdb ... ok test_file_missing (test_pdb_selmodel.TestTool.test_file_missing) $ pdb_selmodel -1 ... ok test_file_not_found (test_pdb_selmodel.TestTool.test_file_not_found) $ pdb_selmodel not_existing.pdb ... ok test_helptext (test_pdb_selmodel.TestTool.test_helptext) $ pdb_selmodel ... ok test_invalid_option (test_pdb_selmodel.TestTool.test_invalid_option) $ pdb_selmodel data/ensemble_OK.pdb ... ok test_invalid_option_2 (test_pdb_selmodel.TestTool.test_invalid_option_2) $ pdb_selmodel -AB data/ensemble_OK.pdb ... ok test_multiple (test_pdb_selmodel.TestTool.test_multiple) $ pdb_selmodel -1,2 data/ensemble_OK.pdb ... ok test_not_an_option (test_pdb_selmodel.TestTool.test_not_an_option) $ pdb_selmodel 20 data/ensemble_OK.pdb ... ok test_one_option (test_pdb_selmodel.TestTool.test_one_option) $ pdb_selmodel -1 data/ensemble_OK.pdb ... ok test_file_missing (test_pdb_selres.TestTool.test_file_missing) $ pdb_selres -1:10 ... ok test_file_not_found (test_pdb_selres.TestTool.test_file_not_found) $ pdb_selres not_existing.pdb ... ok test_helptext (test_pdb_selres.TestTool.test_helptext) $ pdb_selres ... ok test_invalid_option (test_pdb_selres.TestTool.test_invalid_option) $ pdb_selres -A:B data/dummy.pdb ... ok test_invalid_range_1 (test_pdb_selres.TestTool.test_invalid_range_1) $ pdb_selres --9998:: data/dummy.pdb ... ok test_invalid_range_2 (test_pdb_selres.TestTool.test_invalid_range_2) $ pdb_selres -:10000: data/dummy.pdb ... ok test_invalid_range_3 (test_pdb_selres.TestTool.test_invalid_range_3) $ pdb_selres -::: data/dummy.pdb ... ok test_invalid_range_4 (test_pdb_selres.TestTool.test_invalid_range_4) $ pdb_selres -5:1:: data/dummy.pdb ... ok test_not_an_option (test_pdb_selres.TestTool.test_not_an_option) $ pdb_selres 20 data/dummy.pdb ... ok test_range_1 (test_pdb_selres.TestTool.test_range_1) $ pdb_selres -1:5 data/dummy.pdb ... ok test_range_2 (test_pdb_selres.TestTool.test_range_2) $ pdb_selres -1: data/dummy.pdb ... ok test_range_3 (test_pdb_selres.TestTool.test_range_3) $ pdb_selres -:-1 data/dummy.pdb ... ok test_range_4 (test_pdb_selres.TestTool.test_range_4) $ pdb_selres -::5 data/dummy.pdb ... ok test_range_5 (test_pdb_selres.TestTool.test_range_5) $ pdb_selres -6:6 data/dummy.pdb ... ok test_empty_sele (test_pdb_selresname.TestTool.test_empty_sele) $ pdb_selresname - data/dummy.pdb ... ok test_file_missing (test_pdb_selresname.TestTool.test_file_missing) $ pdb_selresname -ARG ... ok test_file_not_found (test_pdb_selresname.TestTool.test_file_not_found) $ pdb_selresname not_existing.pdb ... ok test_helptext (test_pdb_selresname.TestTool.test_helptext) $ pdb_selresname ... ok test_invalid_sele (test_pdb_selresname.TestTool.test_invalid_sele) $ pdb_selresname -ABCD data/dummy.pdb ... ok test_multiple_sele (test_pdb_selresname.TestTool.test_multiple_sele) $ pdb_selresname -ARG,CA data/dummy.pdb ... ok test_not_an_option (test_pdb_selresname.TestTool.test_not_an_option) $ pdb_selresname 20 data/dummy.pdb ... ok test_single_sele (test_pdb_selresname.TestTool.test_single_sele) $ pdb_selresname -ARG data/dummy.pdb ... ok test_file_missing (test_pdb_selseg.TestTool.test_file_missing) $ pdb_selseg -A ... ok test_file_not_found (test_pdb_selseg.TestTool.test_file_not_found) $ pdb_selseg not_existing.pdb ... ok test_helptext (test_pdb_selseg.TestTool.test_helptext) $ pdb_selseg ... ok test_invalid_option (test_pdb_selseg.TestTool.test_invalid_option) $ pdb_selseg data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selseg.TestTool.test_invalid_option_2) $ pdb_selseg -ABCDE data/dummy.pdb ... ok test_multiple (test_pdb_selseg.TestTool.test_multiple) $ pdb_selseg -A,B data/dummy.pdb ... ok test_not_an_option (test_pdb_selseg.TestTool.test_not_an_option) $ pdb_selseg 20 data/dummy.pdb ... ok test_one_option (test_pdb_selseg.TestTool.test_one_option) $ pdb_selseg -Z data/dummy.pdb ... ok test_default (test_pdb_shiftres.TestTool.test_default) $ pdb_shiftres data/dummy.pdb ... ok test_file_missing (test_pdb_shiftres.TestTool.test_file_missing) $ pdb_shiftres -10 ... ok test_file_not_found (test_pdb_shiftres.TestTool.test_file_not_found) $ pdb_shiftres -10 not_existing.pdb ... ok test_helptext (test_pdb_shiftres.TestTool.test_helptext) $ pdb_shiftres ... ok test_invalid_option (test_pdb_shiftres.TestTool.test_invalid_option) $ pdb_shiftres -A data/dummy.pdb ... ok test_not_an_option (test_pdb_shiftres.TestTool.test_not_an_option) $ pdb_shiftres 11 data/dummy.pdb ... ok test_single_option_1 (test_pdb_shiftres.TestTool.test_single_option_1) $ pdb_shiftres -10 data/dummy.pdb ... ok test_single_option_2 (test_pdb_shiftres.TestTool.test_single_option_2) $ pdb_shiftres --10 data/dummy.pdb ... ok test_too_many_residues (test_pdb_shiftres.TestTool.test_too_many_residues) $ pdb_shiftres -9998 data/dummy.pdb ... ok test_default (test_pdb_sort.TestTool.test_default) $ pdb_sort data/dummy.pdb ... ok test_file_not_found (test_pdb_sort.TestTool.test_file_not_found) $ pdb_sort not_existing.pdb ... ok test_helptext (test_pdb_sort.TestTool.test_helptext) $ pdb_sort ... ok test_invalid_option (test_pdb_sort.TestTool.test_invalid_option) $ pdb_sort -A data/dummy.pdb ... ok test_sort_chains (test_pdb_sort.TestTool.test_sort_chains) $ pdb_sort -C data/dummy.pdb ... ok test_default (test_pdb_splitchain.TestTool.test_default) $ pdb_splitchain data/dummy.pdb ... ok test_file_missing (test_pdb_splitchain.TestTool.test_file_missing) $ pdb_splitchain -10 ... ok test_file_not_found (test_pdb_splitchain.TestTool.test_file_not_found) $ pdb_splitchain not_existing.pdb ... ok test_helptext (test_pdb_splitchain.TestTool.test_helptext) $ pdb_splitchain ... ok test_invalid_option (test_pdb_splitchain.TestTool.test_invalid_option) $ pdb_splitchain -A data/dummy.pdb ... ok test_run_fhandler (test_pdb_splitchain.TestTool.test_run_fhandler) pdb_splitchain.run(fhandler) ... ok test_run_iterable (test_pdb_splitchain.TestTool.test_run_iterable) pdb_splitchain.run(iterable) ... ok test_run_iterable_with_name (test_pdb_splitchain.TestTool.test_run_iterable_with_name) pdb_splitchain.run(iterable) ... ok test_default (test_pdb_splitmodel.TestTool.test_default) $ pdb_splitmodel data/ensemble_OK.pdb ... ok test_file_missing (test_pdb_splitmodel.TestTool.test_file_missing) $ pdb_splitmodel -10 ... ok test_file_not_found (test_pdb_splitmodel.TestTool.test_file_not_found) $ pdb_splitmodel not_existing.pdb ... ok test_helptext (test_pdb_splitmodel.TestTool.test_helptext) $ pdb_splitmodel ... ok test_invalid_option (test_pdb_splitmodel.TestTool.test_invalid_option) $ pdb_splitmodel -A data/ensemble_OK.pdb ... ok test_run_fhandler (test_pdb_splitmodel.TestTool.test_run_fhandler) pdb_splitmodel.run(fhandler) ... ok test_run_iterable (test_pdb_splitmodel.TestTool.test_run_iterable) pdb_splitmodel.run(iterable) ... ok test_run_iterable_with_name (test_pdb_splitmodel.TestTool.test_run_iterable_with_name) pdb_splitmodel.run(iterable) ... ok test_default (test_pdb_splitseg.TestTool.test_default) $ pdb_splitseg data/dummy.pdb ... ok test_file_missing (test_pdb_splitseg.TestTool.test_file_missing) $ pdb_splitseg -10 ... ok test_file_not_found (test_pdb_splitseg.TestTool.test_file_not_found) $ pdb_splitseg not_existing.pdb ... ok test_helptext (test_pdb_splitseg.TestTool.test_helptext) $ pdb_splitseg ... ok test_invalid_option (test_pdb_splitseg.TestTool.test_invalid_option) $ pdb_splitseg -A data/dummy.pdb ... ok test_run_fhandler (test_pdb_splitseg.TestTool.test_run_fhandler) pdb_splitseg.run(iterable) ... ok test_run_iterable (test_pdb_splitseg.TestTool.test_run_iterable) pdb_splitseg.run(fhandler) ... ok test_run_iterable_with_name (test_pdb_splitseg.TestTool.test_run_iterable_with_name) pdb_splitseg.run(iterable, outname='newname') ... ok test_corrects_model_ENDMDL (test_pdb_tidy.TestTool.test_corrects_model_ENDMDL) Correct MODEL lines. ... ok test_corrects_model_ENDMDL_with_HETATM (test_pdb_tidy.TestTool.test_corrects_model_ENDMDL_with_HETATM) Correct MODEL lines. ... ok test_corrects_model_format_and_numbers (test_pdb_tidy.TestTool.test_corrects_model_format_and_numbers) Correct MODEL lines. ... ok test_default (test_pdb_tidy.TestTool.test_default) $ pdb_tidy data/dummy.pdb ... ok test_default_in_lib (test_pdb_tidy.TestTool.test_default_in_lib) Test command-line versus lib. ... ok test_default_stdin (test_pdb_tidy.TestTool.test_default_stdin) $ cat data/dummy.pdb | pdb_tidy ... ok test_default_strict (test_pdb_tidy.TestTool.test_default_strict) $ pdb_tidy -strict data/dummy.pdb ... ok test_default_strict_stdin (test_pdb_tidy.TestTool.test_default_strict_stdin) $ cat data/dummy.pdb | pdb_tidy -strict ... ok test_file_not_found (test_pdb_tidy.TestTool.test_file_not_found) $ pdb_tidy not_existing.pdb ... ok test_helptext (test_pdb_tidy.TestTool.test_helptext) $ pdb_tidy ... ok test_invalid_option (test_pdb_tidy.TestTool.test_invalid_option) $ pdb_tidy -A data/dummy.pdb ... ok test_tidy_removes_master (test_pdb_tidy.TestTool.test_tidy_removes_master) Test pdb_tidy removes MASTER lines as well. ... ok test_file_not_found (test_pdb_tocif.TestTool.test_file_not_found) $ pdb_tocif not_existing.pdb ... ok test_helptext (test_pdb_tocif.TestTool.test_helptext) $ pdb_tocif ... ok test_invalid_option (test_pdb_tocif.TestTool.test_invalid_option) $ pdb_tocif -A data/dummy.pdb ... ok test_multi_model (test_pdb_tocif.TestTool.test_multi_model) $ pdb_tocif data/ensemble_OK.pdb ... ok test_single_model (test_pdb_tocif.TestTool.test_single_model) $ pdb_tocif data/dummy.pdb ... ok test_single_model_run_fhandler (test_pdb_tocif.TestTool.test_single_model_run_fhandler) $ pdb_tocif.run(fhandler) ... ok test_single_model_run_fhandler_name (test_pdb_tocif.TestTool.test_single_model_run_fhandler_name) $ pdb_tocif.run(fhandler) ... ok test_single_model_run_iterable (test_pdb_tocif.TestTool.test_single_model_run_iterable) $ pdb_tocif.run(iterable) ... ok test_single_model_run_iterable_with_name (test_pdb_tocif.TestTool.test_single_model_run_iterable_with_name) $ pdb_tocif.run(iterable) ... ok test_default (test_pdb_tofasta.TestTool.test_default) $ pdb_tofasta data/dummy.pdb ... ok test_file_not_found (test_pdb_tofasta.TestTool.test_file_not_found) $ pdb_tofasta not_existing.pdb ... ok test_headerless (test_pdb_tofasta.TestTool.test_headerless) $ pdb_tofasta data/dummy_nohead.pdb ... ok test_helptext (test_pdb_tofasta.TestTool.test_helptext) $ pdb_tofasta ... ok test_invalid_option (test_pdb_tofasta.TestTool.test_invalid_option) $ pdb_tofasta -A data/dummy.pdb ... ok test_multi (test_pdb_tofasta.TestTool.test_multi) $ pdb_tofasta -multi data/dummy.pdb ... ok test_default (test_pdb_uniqname.TestTool.test_default) $ pdb_uniqname data/hetatm.pdb ... ok test_error (test_pdb_uniqname.TestTool.test_error) $ pdb_uniqname data/hetatm_bad.pdb ... ok test_file_missing (test_pdb_uniqname.TestTool.test_file_missing) $ pdb_uniqname ... ok test_file_not_found (test_pdb_uniqname.TestTool.test_file_not_found) $ pdb_uniqname not_existing.pdb ... ok test_helptext (test_pdb_uniqname.TestTool.test_helptext) $ pdb_uniqname ... ok test_invalid_option (test_pdb_uniqname.TestTool.test_invalid_option) $ pdb_uniqname -A data/dummy.pdb ... ok test_file_not_found (test_pdb_validate.TestTool.test_file_not_found) $ pdb_validate not_existing.pdb ... ok test_helptext (test_pdb_validate.TestTool.test_helptext) $ pdb_validate ... ok test_invalid_option (test_pdb_validate.TestTool.test_invalid_option) $ pdb_validate -A data/dummy.pdb ... ok test_valid (test_pdb_validate.TestTool.test_valid) $ pdb_validate data/ensemble_OK.pdb ... ok test_warnings (test_pdb_validate.TestTool.test_warnings) $ pdb_validate data/dummy.pdb ... ok test_default (test_pdb_wc.TestTool.test_default) $ pdb_wc data/dummy.pdb ... ok test_file_not_found (test_pdb_wc.TestTool.test_file_not_found) $ pdb_wc not_existing.pdb ... ok test_helptext (test_pdb_wc.TestTool.test_helptext) $ pdb_wc ... ok test_invalid_option (test_pdb_wc.TestTool.test_invalid_option) $ pdb_wc -X data/dummy.pdb ... ok test_single_option_1 (test_pdb_wc.TestTool.test_single_option_1) $ pdb_wc -m data/ensemble_OK.pdb ... ok test_single_option_2 (test_pdb_wc.TestTool.test_single_option_2) $ pdb_wc -c data/dummy.pdb ... ok ---------------------------------------------------------------------- Ran 362 tests in 0.903s OK I: pybuild base:311: python3.11 setup.py test running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. /usr/lib/python3/dist-packages/setuptools/command/test.py:193: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! ir_d = dist.fetch_build_eggs(dist.install_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! tr_d = dist.fetch_build_eggs(dist.tests_require or []) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! er_d = dist.fetch_build_eggs( WARNING: The wheel package is not available. running egg_info writing pdb_tools.egg-info/PKG-INFO writing dependency_links to pdb_tools.egg-info/dependency_links.txt writing entry points to pdb_tools.egg-info/entry_points.txt writing top-level names to pdb_tools.egg-info/top_level.txt reading manifest file 'pdb_tools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' warning: no previously-included files found matching 'CONTRIBUTING.md' warning: no previously-included files found matching 'PACKING.md' warning: no previously-included files found matching 'tox.ini' no previously-included directories found matching 'docs' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '*.swp' found anywhere in distribution warning: no previously-included files matching 'tags' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pdb_tools.egg-info/SOURCES.txt' running build_ext test_default (test_pdb_b.TestTool.test_default) $ pdb_b data/dummy.pdb ... ok test_file_missing (test_pdb_b.TestTool.test_file_missing) $ pdb_b -10 ... ok test_file_not_found (test_pdb_b.TestTool.test_file_not_found) $ pdb_b not_existing.pdb ... ok test_helptext (test_pdb_b.TestTool.test_helptext) $ pdb_b ... ok test_invalid_option (test_pdb_b.TestTool.test_invalid_option) $ pdb_b -A data/dummy.pdb ... ok test_not_an_option (test_pdb_b.TestTool.test_not_an_option) $ pdb_b 20 data/dummy.pdb ... ok test_two_options (test_pdb_b.TestTool.test_two_options) $ pdb_b -20 data/dummy.pdb ... ok test_default (test_pdb_chain.TestTool.test_default) $ pdb_chain data/dummy.pdb ... ok test_file_missing (test_pdb_chain.TestTool.test_file_missing) $ pdb_chain -A ... ok test_file_not_found (test_pdb_chain.TestTool.test_file_not_found) $ pdb_chain -A not_existing.pdb ... ok test_helptext (test_pdb_chain.TestTool.test_helptext) $ pdb_chain ... ok test_invalid_option (test_pdb_chain.TestTool.test_invalid_option) $ pdb_chain -AH data/dummy.pdb ... ok test_not_an_option (test_pdb_chain.TestTool.test_not_an_option) $ pdb_chain A data/dummy.pdb ... ok test_two_options (test_pdb_chain.TestTool.test_two_options) $ pdb_chain -X data/dummy.pdb ... ok test_default (test_pdb_chainbows.TestTool.test_default) $ pdb_chainbows data/dummy.pdb ... ok test_file_not_found (test_pdb_chainbows.TestTool.test_file_not_found) $ pdb_chainbows not_existing.pdb ... ok test_helptext (test_pdb_chainbows.TestTool.test_helptext) $ pdb_chainbows ... ok test_invalid_option (test_pdb_chainbows.TestTool.test_invalid_option) $ pdb_chainbows -A data/dummy.pdb ... ok test_default (test_pdb_chainxseg.TestTool.test_default) $ pdb_chainxseg data/dummy.pdb ... ok test_file_not_found (test_pdb_chainxseg.TestTool.test_file_not_found) $ pdb_chainxseg not_existing.pdb ... ok test_helptext (test_pdb_chainxseg.TestTool.test_helptext) $ pdb_chainxseg ... ok test_invalid_option (test_pdb_chainxseg.TestTool.test_invalid_option) $ pdb_chainxseg -A data/dummy.pdb ... ok test_ensemble_diffatom (test_pdb_chkensemble.TestTool.test_ensemble_diffatom) $ pdb_chkensemble data/ensemble_error_1.pdb ... ok test_ensemble_noendmdl (test_pdb_chkensemble.TestTool.test_ensemble_noendmdl) $ pdb_chkensemble data/ensemble_error_3.pdb ... ok test_ensemble_noendmdl2 (test_pdb_chkensemble.TestTool.test_ensemble_noendmdl2) $ pdb_chkensemble data/ensemble_error_4.pdb ... ok test_ensemble_nomodel (test_pdb_chkensemble.TestTool.test_ensemble_nomodel) $ pdb_chkensemble data/ensemble_error_2.pdb ... ok test_file_not_found (test_pdb_chkensemble.TestTool.test_file_not_found) $ pdb_chkensemble not_existing.pdb ... ok test_helptext (test_pdb_chkensemble.TestTool.test_helptext) $ pdb_chkensemble ... ok test_invalid_option (test_pdb_chkensemble.TestTool.test_invalid_option) $ pdb_chkensemble -A data/dummy.pdb ... ok test_valid_ensemble (test_pdb_chkensemble.TestTool.test_valid_ensemble) $ pdb_chkensemble data/ensemble_OK.pdb ... ok test_default (test_pdb_delchain.TestTool.test_default) $ pdb_delchain -A data/dummy.pdb ... ok test_file_missing (test_pdb_delchain.TestTool.test_file_missing) $ pdb_delchain -A ... ok test_file_not_found (test_pdb_delchain.TestTool.test_file_not_found) $ pdb_delchain not_existing.pdb ... ok test_helptext (test_pdb_delchain.TestTool.test_helptext) $ pdb_delchain ... ok test_invalid_option (test_pdb_delchain.TestTool.test_invalid_option) $ pdb_delchain data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_delchain.TestTool.test_invalid_option_2) $ pdb_delchain -AB data/dummy.pdb ... ok test_multiple (test_pdb_delchain.TestTool.test_multiple) $ pdb_delchain -A,B data/dummy.pdb ... ok test_not_an_option (test_pdb_delchain.TestTool.test_not_an_option) $ pdb_delchain 20 data/dummy.pdb ... ok test_default (test_pdb_delelem.TestTool.test_default) $ pdb_delelem -H data/dummy.pdb ... ok test_file_missing (test_pdb_delelem.TestTool.test_file_missing) $ pdb_delelem -A ... ok test_file_not_found (test_pdb_delelem.TestTool.test_file_not_found) $ pdb_delelem not_existing.pdb ... ok test_helptext (test_pdb_delelem.TestTool.test_helptext) $ pdb_delelem ... ok test_invalid_option (test_pdb_delelem.TestTool.test_invalid_option) $ pdb_delelem data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_delelem.TestTool.test_invalid_option_2) $ pdb_delelem -ABD data/dummy.pdb ... ok test_multiple (test_pdb_delelem.TestTool.test_multiple) $ pdb_delelem -C,H data/dummy.pdb ... ok test_not_an_option (test_pdb_delelem.TestTool.test_not_an_option) $ pdb_delelem 20 data/dummy.pdb ... ok test_default (test_pdb_delhetatm.TestTool.test_default) $ pdb_delhetatm data/dummy.pdb ... ok test_file_not_found (test_pdb_delhetatm.TestTool.test_file_not_found) $ pdb_delhetatm not_existing.pdb ... ok test_helptext (test_pdb_delhetatm.TestTool.test_helptext) $ pdb_delhetatm ... ok test_invalid_option (test_pdb_delhetatm.TestTool.test_invalid_option) $ pdb_delhetatm -A data/dummy.pdb ... ok test_default (test_pdb_delinsertion.TestTool.test_default) $ pdb_fixinsert data/dummy_insertions.pdb ... ok test_file_missing (test_pdb_delinsertion.TestTool.test_file_missing) $ pdb_fixinsert -A89 ... ok test_file_not_found (test_pdb_delinsertion.TestTool.test_file_not_found) $ pdb_fixinsert not_existing.pdb ... ok test_invalid_option (test_pdb_delinsertion.TestTool.test_invalid_option) $ pdb_fixinsert -A data/dummy_insertions.pdb ... ok test_invalid_option_2 (test_pdb_delinsertion.TestTool.test_invalid_option_2) $ pdb_fixinsert -12A data/dummy_insertions.pdb ... ok test_not_an_option (test_pdb_delinsertion.TestTool.test_not_an_option) $ pdb_fixinsert 20 data/dummy_insertions.pdb ... ok test_select_insertion (test_pdb_delinsertion.TestTool.test_select_insertion) $ pdb_fixinsert -A1 data/dummy_insertions.pdb ... ok test_file_missing (test_pdb_delres.TestTool.test_file_missing) $ pdb_delres -1:10 ... ok test_file_not_found (test_pdb_delres.TestTool.test_file_not_found) $ pdb_delres not_existing.pdb ... ok test_helptext (test_pdb_delres.TestTool.test_helptext) $ pdb_delres ... ok test_invalid_option (test_pdb_delres.TestTool.test_invalid_option) $ pdb_delres -A:B data/dummy.pdb ... ok test_invalid_range_1 (test_pdb_delres.TestTool.test_invalid_range_1) $ pdb_delres --9998:: data/dummy.pdb ... ok test_invalid_range_2 (test_pdb_delres.TestTool.test_invalid_range_2) $ pdb_delres -:10000: data/dummy.pdb ... ok test_invalid_range_3 (test_pdb_delres.TestTool.test_invalid_range_3) $ pdb_delres -::: data/dummy.pdb ... ok test_invalid_range_4 (test_pdb_delres.TestTool.test_invalid_range_4) $ pdb_delres -5:1:: data/dummy.pdb ... ok test_not_an_option (test_pdb_delres.TestTool.test_not_an_option) $ pdb_delres 20 data/dummy.pdb ... ok test_range_1 (test_pdb_delres.TestTool.test_range_1) $ pdb_delres -1:5 data/dummy.pdb ... ok test_range_2 (test_pdb_delres.TestTool.test_range_2) $ pdb_delres -1: data/dummy.pdb ... ok test_range_3 (test_pdb_delres.TestTool.test_range_3) $ pdb_delres -:-1 data/dummy.pdb ... ok test_range_4 (test_pdb_delres.TestTool.test_range_4) $ pdb_delres -::5 data/dummy.pdb ... ok test_empty_sele (test_pdb_delresname.TestTool.test_empty_sele) $ pdb_delresname - data/dummy.pdb ... ok test_file_missing (test_pdb_delresname.TestTool.test_file_missing) $ pdb_delresname -ARG ... ok test_file_not_found (test_pdb_delresname.TestTool.test_file_not_found) $ pdb_delresname not_existing.pdb ... ok test_helptext (test_pdb_delresname.TestTool.test_helptext) $ pdb_delresname ... ok test_invalid_sele (test_pdb_delresname.TestTool.test_invalid_sele) $ pdb_delresname -ABCD data/dummy.pdb ... ok test_multiple_sele (test_pdb_delresname.TestTool.test_multiple_sele) $ pdb_delresname -ARG,CA data/dummy.pdb ... ok test_not_an_option (test_pdb_delresname.TestTool.test_not_an_option) $ pdb_delresname 20 data/dummy.pdb ... ok test_single_sele (test_pdb_delresname.TestTool.test_single_sele) $ pdb_delresname -ARG data/dummy.pdb ... ok test_default (test_pdb_element.TestTool.test_default) $ pdb_element data/dummy.pdb ... ok test_file_not_found (test_pdb_element.TestTool.test_file_not_found) $ pdb_element not_existing.pdb ... ok test_helptext (test_pdb_element.TestTool.test_helptext) $ pdb_element ... ok test_invalid_option (test_pdb_element.TestTool.test_invalid_option) $ pdb_element -A data/dummy.pdb ... ok test_default (test_pdb_fixinsert.TestTool.test_default) $ pdb_fixinsert data/dummy_insertions.pdb ... ok test_file_missing (test_pdb_fixinsert.TestTool.test_file_missing) $ pdb_fixinsert -A89 ... ok test_file_not_found (test_pdb_fixinsert.TestTool.test_file_not_found) $ pdb_fixinsert not_existing.pdb ... ok test_helptext (test_pdb_fixinsert.TestTool.test_helptext) $ pdb_fixinsert ... ok test_invalid_option (test_pdb_fixinsert.TestTool.test_invalid_option) $ pdb_fixinsert -A data/dummy_insertions.pdb ... ok test_invalid_option_2 (test_pdb_fixinsert.TestTool.test_invalid_option_2) $ pdb_fixinsert -12A data/dummy_insertions.pdb ... ok test_not_an_option (test_pdb_fixinsert.TestTool.test_not_an_option) $ pdb_fixinsert 20 data/dummy_insertions.pdb ... ok test_select_insertion (test_pdb_fixinsert.TestTool.test_select_insertion) $ pdb_fixinsert -A1 data/dummy_insertions.pdb ... ok test_conversion (test_pdb_fromcif.TestTool.test_conversion) $ pdb_fromcif data/ensemble_OK.pdb ... ok test_file_not_found (test_pdb_fromcif.TestTool.test_file_not_found) $ pdb_fromcif not_existing.pdb ... ok test_helptext (test_pdb_fromcif.TestTool.test_helptext) $ pdb_fromcif ... ok test_invalid_option (test_pdb_fromcif.TestTool.test_invalid_option) $ pdb_fromcif -A data/dummy.pdb ... ok test_default (test_pdb_gap.TestTool.test_default) $ pdb_gap data/dummy.pdb ... ok test_file_not_found (test_pdb_gap.TestTool.test_file_not_found) $ pdb_gap not_existing.pdb ... ok test_helptext (test_pdb_gap.TestTool.test_helptext) $ pdb_gap ... ok test_invalid_option (test_pdb_gap.TestTool.test_invalid_option) $ pdb_gap -A data/dummy.pdb ... ok test_file_missing (test_pdb_head.TestTool.test_file_missing) $ pdb_head -10 ... ok test_file_not_found (test_pdb_head.TestTool.test_file_not_found) $ pdb_head not_existing.pdb ... ok test_helptext (test_pdb_head.TestTool.test_helptext) $ pdb_head ... ok test_invalid_option (test_pdb_head.TestTool.test_invalid_option) $ pdb_head --10 data/dummy.pdb ... ok test_not_an_option (test_pdb_head.TestTool.test_not_an_option) $ pdb_head 20 data/dummy.pdb ... ok test_valid_option (test_pdb_head.TestTool.test_valid_option) $ pdb_head -10 data/dummy.pdb ... ok test_default (test_pdb_intersect.TestTool.test_default) $ pdb_intersect data/dummy.pdb data/dummy.pdb ... ok test_file_not_found (test_pdb_intersect.TestTool.test_file_not_found) $ pdb_intersect not_existing.pdb ... ok test_helptext (test_pdb_intersect.TestTool.test_helptext) $ pdb_intersect ... ok test_default (test_pdb_keepcoord.TestTool.test_default) $ pdb_keepcoord data/dummy.pdb ... ok test_file_not_found (test_pdb_keepcoord.TestTool.test_file_not_found) $ pdb_keepcoord not_existing.pdb ... ok test_helptext (test_pdb_keepcoord.TestTool.test_helptext) $ pdb_keepcoord ... ok test_invalid_option (test_pdb_keepcoord.TestTool.test_invalid_option) $ pdb_keepcoord -A data/dummy.pdb ... ok test_default (test_pdb_merge.TestTool.test_default) $ pdb_merge data/dummy.pdb ... ok test_file_not_found (test_pdb_merge.TestTool.test_file_not_found) $ pdb_merge not_existing.pdb ... ok test_helptext (test_pdb_merge.TestTool.test_helptext) $ pdb_merge ... ok test_default (test_pdb_mkensemble.TestTool.test_default) $ pdb_mkensemble data/dummy.pdb ... ok test_default_multiple (test_pdb_mkensemble.TestTool.test_default_multiple) $ pdb_mkensemble data/dummy.pdb x20 ... ok test_file_not_found (test_pdb_mkensemble.TestTool.test_file_not_found) $ pdb_mkensemble not_existing.pdb ... ok test_helptext (test_pdb_mkensemble.TestTool.test_helptext) $ pdb_mkensemble ... ok test_default (test_pdb_occ.TestTool.test_default) $ pdb_occ data/dummy.pdb ... ok test_file_missing (test_pdb_occ.TestTool.test_file_missing) $ pdb_occ -1.0 ... ok test_file_not_found (test_pdb_occ.TestTool.test_file_not_found) $ pdb_occ not_existing.pdb ... ok test_helptext (test_pdb_occ.TestTool.test_helptext) $ pdb_occ ... ok test_invalid_option (test_pdb_occ.TestTool.test_invalid_option) $ pdb_occ -A data/dummy.pdb ... ok test_not_an_option (test_pdb_occ.TestTool.test_not_an_option) $ pdb_occ 20 data/dummy.pdb ... ok test_two_options (test_pdb_occ.TestTool.test_two_options) $ pdb_occ -0.5 data/dummy.pdb ... ok test_default (test_pdb_reatom.TestTool.test_default) $ pdb_reatom data/dummy.pdb ... ok test_file_missing (test_pdb_reatom.TestTool.test_file_missing) $ pdb_reatom -10 ... ok test_file_not_found (test_pdb_reatom.TestTool.test_file_not_found) $ pdb_reatom -10 not_existing.pdb ... ok test_helptext (test_pdb_reatom.TestTool.test_helptext) $ pdb_reatom ... ok test_invalid_option (test_pdb_reatom.TestTool.test_invalid_option) $ pdb_reatom -A data/dummy.pdb ... ok test_not_an_option (test_pdb_reatom.TestTool.test_not_an_option) $ pdb_reatom 11 data/dummy.pdb ... ok test_too_many_atoms (test_pdb_reatom.TestTool.test_too_many_atoms) $ pdb_reatom -99998 data/dummy.pdb ... ok test_two_options_neg (test_pdb_reatom.TestTool.test_two_options_neg) $ pdb_reatom --10 data/dummy.pdb ... ok test_two_options_pos (test_pdb_reatom.TestTool.test_two_options_pos) $ pdb_reatom -10 data/dummy.pdb ... ok test_default (test_pdb_reres.TestTool.test_default) $ pdb_reres data/dummy.pdb ... ok test_file_missing (test_pdb_reres.TestTool.test_file_missing) $ pdb_reres -10 ... ok test_file_not_found (test_pdb_reres.TestTool.test_file_not_found) $ pdb_reres -10 not_existing.pdb ... ok test_helptext (test_pdb_reres.TestTool.test_helptext) $ pdb_reres ... ok test_invalid_option (test_pdb_reres.TestTool.test_invalid_option) $ pdb_reres -A data/dummy.pdb ... ok test_not_an_option (test_pdb_reres.TestTool.test_not_an_option) $ pdb_reres 11 data/dummy.pdb ... ok test_three_with_models (test_pdb_reres.TestTool.test_three_with_models) $ pdb_reres -4 data/ensemble.OK.pdb ... ok test_three_with_single_res_models (test_pdb_reres.TestTool.test_three_with_single_res_models) $ pdb_reres -4 data/ensemble.OK.pdb ... ok test_too_many_residues (test_pdb_reres.TestTool.test_too_many_residues) $ pdb_reres -9998 data/dummy.pdb ... ok test_two_options_neg (test_pdb_reres.TestTool.test_two_options_neg) $ pdb_reres --10 data/dummy.pdb ... ok test_two_options_pos (test_pdb_reres.TestTool.test_two_options_pos) $ pdb_reres -10 data/dummy.pdb ... ok test_file_missing (test_pdb_rplchain.TestTool.test_file_missing) $ pdb_rplchain -A ... ok test_file_not_found (test_pdb_rplchain.TestTool.test_file_not_found) $ pdb_rplchain -A not_existing.pdb ... ok test_helptext (test_pdb_rplchain.TestTool.test_helptext) $ pdb_rplchain ... ok test_invalid_option_1 (test_pdb_rplchain.TestTool.test_invalid_option_1) $ pdb_rplchain -AH data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_rplchain.TestTool.test_invalid_option_2) $ pdb_rplchain -AH: data/dummy.pdb ... ok test_not_an_option (test_pdb_rplchain.TestTool.test_not_an_option) $ pdb_rplchain A data/dummy.pdb ... ok test_option_1 (test_pdb_rplchain.TestTool.test_option_1) $ pdb_rplchain -D:Z data/dummy.pdb ... ok test_option_2 (test_pdb_rplchain.TestTool.test_option_2) $ pdb_rplchain -A: data/dummy.pdb ... ok test_file_missing (test_pdb_rplresname.TestTool.test_file_missing) $ pdb_rplresname -DA ... ok test_file_not_found (test_pdb_rplresname.TestTool.test_file_not_found) $ pdb_rplresname -DA:DT not_existing.pdb ... ok test_helptext (test_pdb_rplresname.TestTool.test_helptext) $ pdb_rplresname ... ok test_invalid_option_1 (test_pdb_rplresname.TestTool.test_invalid_option_1) $ pdb_rplresname -HIS data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_rplresname.TestTool.test_invalid_option_2) $ pdb_rplresname -AH: data/dummy.pdb ... ok test_not_an_option (test_pdb_rplresname.TestTool.test_not_an_option) $ pdb_rplresname A data/dummy.pdb ... ok test_option_1 (test_pdb_rplresname.TestTool.test_option_1) $ pdb_rplresname -MET:DRG data/dummy.pdb ... ok test_option_2 (test_pdb_rplresname.TestTool.test_option_2) $ pdb_rplresname -DT:DA data/dummy.pdb ... ok test_default (test_pdb_seg.TestTool.test_default) $ pdb_seg data/dummy.pdb ... ok test_file_missing (test_pdb_seg.TestTool.test_file_missing) $ pdb_seg -A ... ok test_file_not_found (test_pdb_seg.TestTool.test_file_not_found) $ pdb_seg -A not_existing.pdb ... ok test_helptext (test_pdb_seg.TestTool.test_helptext) $ pdb_seg ... ok test_invalid_option (test_pdb_seg.TestTool.test_invalid_option) $ pdb_seg -AHASX data/dummy.pdb ... ok test_not_an_option (test_pdb_seg.TestTool.test_not_an_option) $ pdb_seg A data/dummy.pdb ... ok test_two_options (test_pdb_seg.TestTool.test_two_options) $ pdb_seg -X data/dummy.pdb ... ok test_default (test_pdb_segxchain.TestTool.test_default) $ pdb_segxchain data/dummy.pdb ... ok test_file_not_found (test_pdb_segxchain.TestTool.test_file_not_found) $ pdb_segxchain not_existing.pdb ... ok test_helptext (test_pdb_segxchain.TestTool.test_helptext) $ pdb_segxchain ... ok test_invalid_option (test_pdb_segxchain.TestTool.test_invalid_option) $ pdb_segxchain -A data/dummy.pdb ... ok test_all_same_residue (test_pdb_selaltloc.TestTool.test_all_same_residue) Test all same residue. ... ok test_all_same_residue_false (test_pdb_selaltloc.TestTool.test_all_same_residue_false) Test all same residue. ... ok test_anisou_lines (test_pdb_selaltloc.TestTool.test_anisou_lines) Test anisou.pdb is not altered because there are not altlocs. ... ok test_anisou_missing (test_pdb_selaltloc.TestTool.test_anisou_missing) Test raises error if there are missing anisou lines. ... ok test_anisou_with_altloc_maxocc (test_pdb_selaltloc.TestTool.test_anisou_with_altloc_maxocc) Test anisou_altloc.pdb properly selects the highest altloc. ... ok test_anisou_with_altloc_maxocc_A (test_pdb_selaltloc.TestTool.test_anisou_with_altloc_maxocc_A) Test anisou_altloc.pdb selects altloc -A. ... ok test_anisou_with_altloc_maxocc_B (test_pdb_selaltloc.TestTool.test_anisou_with_altloc_maxocc_B) Test anisou_altloc.pdb selects altloc -B. ... ok test_captures_previous_residue_maxocc (test_pdb_selaltloc.TestTool.test_captures_previous_residue_maxocc) Test the previous residue is not lost. ... ok test_captures_previous_residue_maxocc_A (test_pdb_selaltloc.TestTool.test_captures_previous_residue_maxocc_A) Test the previous residue is not lost. ... ok test_captures_previous_residue_maxocc_B (test_pdb_selaltloc.TestTool.test_captures_previous_residue_maxocc_B) Test the previous residue is not lost. ... ok test_default (test_pdb_selaltloc.TestTool.test_default) $ pdb_selaltloc data/dummy_altloc.pdb ... ok test_default2 (test_pdb_selaltloc.TestTool.test_default2) $ pdb_selaltloc data/dummy_altloc2.pdb ... ok test_file_missing (test_pdb_selaltloc.TestTool.test_file_missing) $ pdb_selaltloc -A ... ok test_file_not_found (test_pdb_selaltloc.TestTool.test_file_not_found) $ pdb_selaltloc not_existing.pdb ... ok test_gives_same_dummy_A (test_pdb_selaltloc.TestTool.test_gives_same_dummy_A) Test dummy.pdb is not altered because there are not altlocs. ... ok test_gives_same_dummy_B (test_pdb_selaltloc.TestTool.test_gives_same_dummy_B) Test dummy.pdb is not altered because there are not altlocs. ... ok test_gives_same_dummy_maxocc (test_pdb_selaltloc.TestTool.test_gives_same_dummy_maxocc) Test dummy.pdb is not altered because there are not altlocs. ... ok test_helptext (test_pdb_selaltloc.TestTool.test_helptext) $ pdb_selaltloc ... ok test_invalid_option (test_pdb_selaltloc.TestTool.test_invalid_option) $ pdb_selaltloc -AH data/dummy.pdb ... ok test_is_another_group_1 (test_pdb_selaltloc.TestTool.test_is_another_group_1) Test function to identify we entered another altloc group. ... ok test_is_another_group_2 (test_pdb_selaltloc.TestTool.test_is_another_group_2) Test function to identify we entered another altloc group. ... ok test_is_another_group_3 (test_pdb_selaltloc.TestTool.test_is_another_group_3) Test function to identify we entered another altloc group. ... ok test_is_another_group_4 (test_pdb_selaltloc.TestTool.test_is_another_group_4) Test function to identify we entered another altloc group. ... ok test_is_same_group_1 (test_pdb_selaltloc.TestTool.test_is_same_group_1) Test function to identify we entered another altloc group. ... ok test_is_same_group_2 (test_pdb_selaltloc.TestTool.test_is_same_group_2) Test function to identify we entered another altloc group. ... ok test_is_same_group_3 (test_pdb_selaltloc.TestTool.test_is_same_group_3) Test function to identify we entered another altloc group. ... ok test_is_same_group_4 (test_pdb_selaltloc.TestTool.test_is_same_group_4) Test function to identify we entered another altloc group. ... ok test_is_same_group_5 (test_pdb_selaltloc.TestTool.test_is_same_group_5) Test function to identify we entered another altloc group. ... ok test_not_an_option (test_pdb_selaltloc.TestTool.test_not_an_option) $ pdb_selaltloc 20 data/dummy.pdb ... ok test_partial_altloc (test_pdb_selaltloc.TestTool.test_partial_altloc) ... ok test_select_loc_A (test_pdb_selaltloc.TestTool.test_select_loc_A) $ pdb_selaltloc -A data/dummy_altloc.pdb ... ok test_select_loc_A_2 (test_pdb_selaltloc.TestTool.test_select_loc_A_2) $ pdb_selaltloc -A data/dummy_altloc2.pdb ... ok test_select_loc_B (test_pdb_selaltloc.TestTool.test_select_loc_B) $ pdb_selaltloc -B data/dummy_altloc.pdb ... ok test_select_loc_B_2 (test_pdb_selaltloc.TestTool.test_select_loc_B_2) $ pdb_selaltloc -B data/dummy_altloc2.pdb ... ok test_select_loc_C (test_pdb_selaltloc.TestTool.test_select_loc_C) $ pdb_selaltloc -C data/dummy_altloc.pdb ... ok test_select_loc_C_2 (test_pdb_selaltloc.TestTool.test_select_loc_C_2) $ pdb_selaltloc -C data/dummy_altloc2.pdb ... ok test_vu7_maxocc (test_pdb_selaltloc.TestTool.test_vu7_maxocc) Test vu7.pdb properly selects highest altloc. ... ok test_vu7_maxocc_A (test_pdb_selaltloc.TestTool.test_vu7_maxocc_A) Test vu7.pdb properly selects altloc A. ... ok test_vu7_maxocc_B (test_pdb_selaltloc.TestTool.test_vu7_maxocc_B) Test vu7.pdb properly selects altloc B. ... ok test_file_missing (test_pdb_selatom.TestTool.test_file_missing) $ pdb_selatom -CA ... ok test_file_not_found (test_pdb_selatom.TestTool.test_file_not_found) $ pdb_selatom not_existing.pdb ... ok test_helptext (test_pdb_selatom.TestTool.test_helptext) $ pdb_selatom ... ok test_invalid_option (test_pdb_selatom.TestTool.test_invalid_option) $ pdb_selatom data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selatom.TestTool.test_invalid_option_2) $ pdb_selatom -ABCDE data/dummy.pdb ... ok test_multiple (test_pdb_selatom.TestTool.test_multiple) $ pdb_selatom -CA,CB data/dummy.pdb ... ok test_not_an_option (test_pdb_selatom.TestTool.test_not_an_option) $ pdb_selatom 20 data/dummy.pdb ... ok test_one_option (test_pdb_selatom.TestTool.test_one_option) $ pdb_selatom -CA data/dummy.pdb ... ok test_file_missing (test_pdb_selchain.TestTool.test_file_missing) $ pdb_selchain -A ... ok test_file_not_found (test_pdb_selchain.TestTool.test_file_not_found) $ pdb_selchain not_existing.pdb ... ok test_helptext (test_pdb_selchain.TestTool.test_helptext) $ pdb_selchain ... ok test_invalid_option (test_pdb_selchain.TestTool.test_invalid_option) $ pdb_selchain data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selchain.TestTool.test_invalid_option_2) $ pdb_selchain -AB data/dummy.pdb ... ok test_multiple (test_pdb_selchain.TestTool.test_multiple) $ pdb_selchain -A,B data/dummy.pdb ... ok test_not_an_option (test_pdb_selchain.TestTool.test_not_an_option) $ pdb_selchain 20 data/dummy.pdb ... ok test_one_option (test_pdb_selchain.TestTool.test_one_option) $ pdb_selchain -A data/dummy.pdb ... ok test_one_option_CAPS_lowercase (test_pdb_selchain.TestTool.test_one_option_CAPS_lowercase) $ pdb_selchain -A data/dummy_az09.pdb ... ok test_one_option_digit (test_pdb_selchain.TestTool.test_one_option_digit) $ pdb_selchain -1 data/dummy_az09.pdb ... ok test_one_option_lowercase (test_pdb_selchain.TestTool.test_one_option_lowercase) $ pdb_selchain -b data/dummy_az09.pdb ... ok test_file_missing (test_pdb_selelem.TestTool.test_file_missing) $ pdb_selelem -C ... ok test_file_not_found (test_pdb_selelem.TestTool.test_file_not_found) $ pdb_selelem not_existing.pdb ... ok test_helptext (test_pdb_selelem.TestTool.test_helptext) $ pdb_selelem ... ok test_invalid_option (test_pdb_selelem.TestTool.test_invalid_option) $ pdb_selelem data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selelem.TestTool.test_invalid_option_2) $ pdb_selelem -ABC data/dummy.pdb ... ok test_multiple (test_pdb_selelem.TestTool.test_multiple) $ pdb_selelem -C,O data/dummy.pdb ... ok test_not_an_option (test_pdb_selelem.TestTool.test_not_an_option) $ pdb_selelem 20 data/dummy.pdb ... ok test_one_option (test_pdb_selelem.TestTool.test_one_option) $ pdb_selelem -C data/dummy.pdb ... ok test_default (test_pdb_selhetatm.TestTool.test_default) $ pdb_selhetatm data/dummy.pdb ... ok test_file_not_found (test_pdb_selhetatm.TestTool.test_file_not_found) $ pdb_selhetatm not_existing.pdb ... ok test_helptext (test_pdb_selhetatm.TestTool.test_helptext) $ pdb_selhetatm ... ok test_invalid_option (test_pdb_selhetatm.TestTool.test_invalid_option) $ pdb_selhetatm -A data/dummy.pdb ... ok test_file_missing (test_pdb_selmodel.TestTool.test_file_missing) $ pdb_selmodel -1 ... ok test_file_not_found (test_pdb_selmodel.TestTool.test_file_not_found) $ pdb_selmodel not_existing.pdb ... ok test_helptext (test_pdb_selmodel.TestTool.test_helptext) $ pdb_selmodel ... ok test_invalid_option (test_pdb_selmodel.TestTool.test_invalid_option) $ pdb_selmodel data/ensemble_OK.pdb ... ok test_invalid_option_2 (test_pdb_selmodel.TestTool.test_invalid_option_2) $ pdb_selmodel -AB data/ensemble_OK.pdb ... ok test_multiple (test_pdb_selmodel.TestTool.test_multiple) $ pdb_selmodel -1,2 data/ensemble_OK.pdb ... ok test_not_an_option (test_pdb_selmodel.TestTool.test_not_an_option) $ pdb_selmodel 20 data/ensemble_OK.pdb ... ok test_one_option (test_pdb_selmodel.TestTool.test_one_option) $ pdb_selmodel -1 data/ensemble_OK.pdb ... ok test_file_missing (test_pdb_selres.TestTool.test_file_missing) $ pdb_selres -1:10 ... ok test_file_not_found (test_pdb_selres.TestTool.test_file_not_found) $ pdb_selres not_existing.pdb ... ok test_helptext (test_pdb_selres.TestTool.test_helptext) $ pdb_selres ... ok test_invalid_option (test_pdb_selres.TestTool.test_invalid_option) $ pdb_selres -A:B data/dummy.pdb ... ok test_invalid_range_1 (test_pdb_selres.TestTool.test_invalid_range_1) $ pdb_selres --9998:: data/dummy.pdb ... ok test_invalid_range_2 (test_pdb_selres.TestTool.test_invalid_range_2) $ pdb_selres -:10000: data/dummy.pdb ... ok test_invalid_range_3 (test_pdb_selres.TestTool.test_invalid_range_3) $ pdb_selres -::: data/dummy.pdb ... ok test_invalid_range_4 (test_pdb_selres.TestTool.test_invalid_range_4) $ pdb_selres -5:1:: data/dummy.pdb ... ok test_not_an_option (test_pdb_selres.TestTool.test_not_an_option) $ pdb_selres 20 data/dummy.pdb ... ok test_range_1 (test_pdb_selres.TestTool.test_range_1) $ pdb_selres -1:5 data/dummy.pdb ... ok test_range_2 (test_pdb_selres.TestTool.test_range_2) $ pdb_selres -1: data/dummy.pdb ... ok test_range_3 (test_pdb_selres.TestTool.test_range_3) $ pdb_selres -:-1 data/dummy.pdb ... ok test_range_4 (test_pdb_selres.TestTool.test_range_4) $ pdb_selres -::5 data/dummy.pdb ... ok test_range_5 (test_pdb_selres.TestTool.test_range_5) $ pdb_selres -6:6 data/dummy.pdb ... ok test_empty_sele (test_pdb_selresname.TestTool.test_empty_sele) $ pdb_selresname - data/dummy.pdb ... ok test_file_missing (test_pdb_selresname.TestTool.test_file_missing) $ pdb_selresname -ARG ... ok test_file_not_found (test_pdb_selresname.TestTool.test_file_not_found) $ pdb_selresname not_existing.pdb ... ok test_helptext (test_pdb_selresname.TestTool.test_helptext) $ pdb_selresname ... ok test_invalid_sele (test_pdb_selresname.TestTool.test_invalid_sele) $ pdb_selresname -ABCD data/dummy.pdb ... ok test_multiple_sele (test_pdb_selresname.TestTool.test_multiple_sele) $ pdb_selresname -ARG,CA data/dummy.pdb ... ok test_not_an_option (test_pdb_selresname.TestTool.test_not_an_option) $ pdb_selresname 20 data/dummy.pdb ... ok test_single_sele (test_pdb_selresname.TestTool.test_single_sele) $ pdb_selresname -ARG data/dummy.pdb ... ok test_file_missing (test_pdb_selseg.TestTool.test_file_missing) $ pdb_selseg -A ... ok test_file_not_found (test_pdb_selseg.TestTool.test_file_not_found) $ pdb_selseg not_existing.pdb ... ok test_helptext (test_pdb_selseg.TestTool.test_helptext) $ pdb_selseg ... ok test_invalid_option (test_pdb_selseg.TestTool.test_invalid_option) $ pdb_selseg data/dummy.pdb ... ok test_invalid_option_2 (test_pdb_selseg.TestTool.test_invalid_option_2) $ pdb_selseg -ABCDE data/dummy.pdb ... ok test_multiple (test_pdb_selseg.TestTool.test_multiple) $ pdb_selseg -A,B data/dummy.pdb ... ok test_not_an_option (test_pdb_selseg.TestTool.test_not_an_option) $ pdb_selseg 20 data/dummy.pdb ... ok test_one_option (test_pdb_selseg.TestTool.test_one_option) $ pdb_selseg -Z data/dummy.pdb ... ok test_default (test_pdb_shiftres.TestTool.test_default) $ pdb_shiftres data/dummy.pdb ... ok test_file_missing (test_pdb_shiftres.TestTool.test_file_missing) $ pdb_shiftres -10 ... ok test_file_not_found (test_pdb_shiftres.TestTool.test_file_not_found) $ pdb_shiftres -10 not_existing.pdb ... ok test_helptext (test_pdb_shiftres.TestTool.test_helptext) $ pdb_shiftres ... ok test_invalid_option (test_pdb_shiftres.TestTool.test_invalid_option) $ pdb_shiftres -A data/dummy.pdb ... ok test_not_an_option (test_pdb_shiftres.TestTool.test_not_an_option) $ pdb_shiftres 11 data/dummy.pdb ... ok test_single_option_1 (test_pdb_shiftres.TestTool.test_single_option_1) $ pdb_shiftres -10 data/dummy.pdb ... ok test_single_option_2 (test_pdb_shiftres.TestTool.test_single_option_2) $ pdb_shiftres --10 data/dummy.pdb ... ok test_too_many_residues (test_pdb_shiftres.TestTool.test_too_many_residues) $ pdb_shiftres -9998 data/dummy.pdb ... ok test_default (test_pdb_sort.TestTool.test_default) $ pdb_sort data/dummy.pdb ... ok test_file_not_found (test_pdb_sort.TestTool.test_file_not_found) $ pdb_sort not_existing.pdb ... ok test_helptext (test_pdb_sort.TestTool.test_helptext) $ pdb_sort ... ok test_invalid_option (test_pdb_sort.TestTool.test_invalid_option) $ pdb_sort -A data/dummy.pdb ... ok test_sort_chains (test_pdb_sort.TestTool.test_sort_chains) $ pdb_sort -C data/dummy.pdb ... ok test_default (test_pdb_splitchain.TestTool.test_default) $ pdb_splitchain data/dummy.pdb ... ok test_file_missing (test_pdb_splitchain.TestTool.test_file_missing) $ pdb_splitchain -10 ... ok test_file_not_found (test_pdb_splitchain.TestTool.test_file_not_found) $ pdb_splitchain not_existing.pdb ... ok test_helptext (test_pdb_splitchain.TestTool.test_helptext) $ pdb_splitchain ... ok test_invalid_option (test_pdb_splitchain.TestTool.test_invalid_option) $ pdb_splitchain -A data/dummy.pdb ... ok test_run_fhandler (test_pdb_splitchain.TestTool.test_run_fhandler) pdb_splitchain.run(fhandler) ... ok test_run_iterable (test_pdb_splitchain.TestTool.test_run_iterable) pdb_splitchain.run(iterable) ... ok test_run_iterable_with_name (test_pdb_splitchain.TestTool.test_run_iterable_with_name) pdb_splitchain.run(iterable) ... ok test_default (test_pdb_splitmodel.TestTool.test_default) $ pdb_splitmodel data/ensemble_OK.pdb ... ok test_file_missing (test_pdb_splitmodel.TestTool.test_file_missing) $ pdb_splitmodel -10 ... ok test_file_not_found (test_pdb_splitmodel.TestTool.test_file_not_found) $ pdb_splitmodel not_existing.pdb ... ok test_helptext (test_pdb_splitmodel.TestTool.test_helptext) $ pdb_splitmodel ... ok test_invalid_option (test_pdb_splitmodel.TestTool.test_invalid_option) $ pdb_splitmodel -A data/ensemble_OK.pdb ... ok test_run_fhandler (test_pdb_splitmodel.TestTool.test_run_fhandler) pdb_splitmodel.run(fhandler) ... ok test_run_iterable (test_pdb_splitmodel.TestTool.test_run_iterable) pdb_splitmodel.run(iterable) ... ok test_run_iterable_with_name (test_pdb_splitmodel.TestTool.test_run_iterable_with_name) pdb_splitmodel.run(iterable) ... ok test_default (test_pdb_splitseg.TestTool.test_default) $ pdb_splitseg data/dummy.pdb ... ok test_file_missing (test_pdb_splitseg.TestTool.test_file_missing) $ pdb_splitseg -10 ... ok test_file_not_found (test_pdb_splitseg.TestTool.test_file_not_found) $ pdb_splitseg not_existing.pdb ... ok test_helptext (test_pdb_splitseg.TestTool.test_helptext) $ pdb_splitseg ... ok test_invalid_option (test_pdb_splitseg.TestTool.test_invalid_option) $ pdb_splitseg -A data/dummy.pdb ... ok test_run_fhandler (test_pdb_splitseg.TestTool.test_run_fhandler) pdb_splitseg.run(iterable) ... ok test_run_iterable (test_pdb_splitseg.TestTool.test_run_iterable) pdb_splitseg.run(fhandler) ... ok test_run_iterable_with_name (test_pdb_splitseg.TestTool.test_run_iterable_with_name) pdb_splitseg.run(iterable, outname='newname') ... ok test_corrects_model_ENDMDL (test_pdb_tidy.TestTool.test_corrects_model_ENDMDL) Correct MODEL lines. ... ok test_corrects_model_ENDMDL_with_HETATM (test_pdb_tidy.TestTool.test_corrects_model_ENDMDL_with_HETATM) Correct MODEL lines. ... ok test_corrects_model_format_and_numbers (test_pdb_tidy.TestTool.test_corrects_model_format_and_numbers) Correct MODEL lines. ... ok test_default (test_pdb_tidy.TestTool.test_default) $ pdb_tidy data/dummy.pdb ... ok test_default_in_lib (test_pdb_tidy.TestTool.test_default_in_lib) Test command-line versus lib. ... ok test_default_stdin (test_pdb_tidy.TestTool.test_default_stdin) $ cat data/dummy.pdb | pdb_tidy ... ok test_default_strict (test_pdb_tidy.TestTool.test_default_strict) $ pdb_tidy -strict data/dummy.pdb ... ok test_default_strict_stdin (test_pdb_tidy.TestTool.test_default_strict_stdin) $ cat data/dummy.pdb | pdb_tidy -strict ... ok test_file_not_found (test_pdb_tidy.TestTool.test_file_not_found) $ pdb_tidy not_existing.pdb ... ok test_helptext (test_pdb_tidy.TestTool.test_helptext) $ pdb_tidy ... ok test_invalid_option (test_pdb_tidy.TestTool.test_invalid_option) $ pdb_tidy -A data/dummy.pdb ... ok test_tidy_removes_master (test_pdb_tidy.TestTool.test_tidy_removes_master) Test pdb_tidy removes MASTER lines as well. ... ok test_file_not_found (test_pdb_tocif.TestTool.test_file_not_found) $ pdb_tocif not_existing.pdb ... ok test_helptext (test_pdb_tocif.TestTool.test_helptext) $ pdb_tocif ... ok test_invalid_option (test_pdb_tocif.TestTool.test_invalid_option) $ pdb_tocif -A data/dummy.pdb ... ok test_multi_model (test_pdb_tocif.TestTool.test_multi_model) $ pdb_tocif data/ensemble_OK.pdb ... ok test_single_model (test_pdb_tocif.TestTool.test_single_model) $ pdb_tocif data/dummy.pdb ... ok test_single_model_run_fhandler (test_pdb_tocif.TestTool.test_single_model_run_fhandler) $ pdb_tocif.run(fhandler) ... ok test_single_model_run_fhandler_name (test_pdb_tocif.TestTool.test_single_model_run_fhandler_name) $ pdb_tocif.run(fhandler) ... ok test_single_model_run_iterable (test_pdb_tocif.TestTool.test_single_model_run_iterable) $ pdb_tocif.run(iterable) ... ok test_single_model_run_iterable_with_name (test_pdb_tocif.TestTool.test_single_model_run_iterable_with_name) $ pdb_tocif.run(iterable) ... ok test_default (test_pdb_tofasta.TestTool.test_default) $ pdb_tofasta data/dummy.pdb ... ok test_file_not_found (test_pdb_tofasta.TestTool.test_file_not_found) $ pdb_tofasta not_existing.pdb ... ok test_headerless (test_pdb_tofasta.TestTool.test_headerless) $ pdb_tofasta data/dummy_nohead.pdb ... ok test_helptext (test_pdb_tofasta.TestTool.test_helptext) $ pdb_tofasta ... ok test_invalid_option (test_pdb_tofasta.TestTool.test_invalid_option) $ pdb_tofasta -A data/dummy.pdb ... ok test_multi (test_pdb_tofasta.TestTool.test_multi) $ pdb_tofasta -multi data/dummy.pdb ... ok test_default (test_pdb_uniqname.TestTool.test_default) $ pdb_uniqname data/hetatm.pdb ... ok test_error (test_pdb_uniqname.TestTool.test_error) $ pdb_uniqname data/hetatm_bad.pdb ... ok test_file_missing (test_pdb_uniqname.TestTool.test_file_missing) $ pdb_uniqname ... ok test_file_not_found (test_pdb_uniqname.TestTool.test_file_not_found) $ pdb_uniqname not_existing.pdb ... ok test_helptext (test_pdb_uniqname.TestTool.test_helptext) $ pdb_uniqname ... ok test_invalid_option (test_pdb_uniqname.TestTool.test_invalid_option) $ pdb_uniqname -A data/dummy.pdb ... ok test_file_not_found (test_pdb_validate.TestTool.test_file_not_found) $ pdb_validate not_existing.pdb ... ok test_helptext (test_pdb_validate.TestTool.test_helptext) $ pdb_validate ... ok test_invalid_option (test_pdb_validate.TestTool.test_invalid_option) $ pdb_validate -A data/dummy.pdb ... ok test_valid (test_pdb_validate.TestTool.test_valid) $ pdb_validate data/ensemble_OK.pdb ... ok test_warnings (test_pdb_validate.TestTool.test_warnings) $ pdb_validate data/dummy.pdb ... ok test_default (test_pdb_wc.TestTool.test_default) $ pdb_wc data/dummy.pdb ... ok test_file_not_found (test_pdb_wc.TestTool.test_file_not_found) $ pdb_wc not_existing.pdb ... ok test_helptext (test_pdb_wc.TestTool.test_helptext) $ pdb_wc ... ok test_invalid_option (test_pdb_wc.TestTool.test_invalid_option) $ pdb_wc -X data/dummy.pdb ... ok test_single_option_1 (test_pdb_wc.TestTool.test_single_option_1) $ pdb_wc -m data/ensemble_OK.pdb ... ok test_single_option_2 (test_pdb_wc.TestTool.test_single_option_2) $ pdb_wc -c data/dummy.pdb ... ok ---------------------------------------------------------------------- Ran 362 tests in 1.075s OK make[1]: Leaving directory '/build/reproducible-path/pdb-tools-2.5.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12 creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_fetch.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/pdbtools/pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/config.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/utils.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.12_pdbtools/build/tests/test_pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_head.py to pdb_head.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_gap.py to pdb_gap.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_delelem.py to pdb_delelem.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_wc.py to pdb_wc.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selseg.py to pdb_selseg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_delresname.py to pdb_delresname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selchain.py to pdb_selchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_occ.py to pdb_occ.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_chainxseg.py to pdb_chainxseg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_splitseg.py to pdb_splitseg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_reres.py to pdb_reres.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_uniqname.py to pdb_uniqname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selresname.py to pdb_selresname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_delhetatm.py to pdb_delhetatm.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_chainbows.py to pdb_chainbows.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_merge.py to pdb_merge.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_splitmodel.py to pdb_splitmodel.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selelem.py to pdb_selelem.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_rplresname.py to pdb_rplresname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selmodel.py to pdb_selmodel.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_segxchain.py to pdb_segxchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_splitchain.py to pdb_splitchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_reatom.py to pdb_reatom.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selatom.py to pdb_selatom.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_tofasta.py to pdb_tofasta.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_chain.py to pdb_chain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selres.py to pdb_selres.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_chkensemble.py to pdb_chkensemble.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selhetatm.py to pdb_selhetatm.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_shiftres.py to pdb_shiftres.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_fromcif.py to pdb_fromcif.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_mkensemble.py to pdb_mkensemble.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_delres.py to pdb_delres.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_tocif.py to pdb_tocif.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_intersect.py to pdb_intersect.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_b.py to pdb_b.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_selaltloc.py to pdb_selaltloc.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_fixinsert.py to pdb_fixinsert.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_keepcoord.py to pdb_keepcoord.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_delinsertion.py to pdb_delinsertion.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_validate.py to pdb_validate.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_sort.py to pdb_sort.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_fetch.py to pdb_fetch.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_rplchain.py to pdb_rplchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_element.py to pdb_element.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_tidy.py to pdb_tidy.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_delchain.py to pdb_delchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdbtools/pdb_seg.py to pdb_seg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_chain.py to test_pdb_chain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_element.py to test_pdb_element.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_tocif.py to test_pdb_tocif.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_splitmodel.py to test_pdb_splitmodel.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_uniqname.py to test_pdb_uniqname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selseg.py to test_pdb_selseg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_delhetatm.py to test_pdb_delhetatm.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_fromcif.py to test_pdb_fromcif.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_fixinsert.py to test_pdb_fixinsert.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_mkensemble.py to test_pdb_mkensemble.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_delchain.py to test_pdb_delchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_reres.py to test_pdb_reres.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_chkensemble.py to test_pdb_chkensemble.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_tidy.py to test_pdb_tidy.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_keepcoord.py to test_pdb_keepcoord.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selchain.py to test_pdb_selchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selaltloc.py to test_pdb_selaltloc.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_validate.py to test_pdb_validate.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_splitchain.py to test_pdb_splitchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_chainbows.py to test_pdb_chainbows.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_segxchain.py to test_pdb_segxchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_reatom.py to test_pdb_reatom.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_splitseg.py to test_pdb_splitseg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selhetatm.py to test_pdb_selhetatm.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_occ.py to test_pdb_occ.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_gap.py to test_pdb_gap.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_intersect.py to test_pdb_intersect.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_delresname.py to test_pdb_delresname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_delinsertion.py to test_pdb_delinsertion.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selmodel.py to test_pdb_selmodel.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_rplresname.py to test_pdb_rplresname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_seg.py to test_pdb_seg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_chainxseg.py to test_pdb_chainxseg.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/config.py to config.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_shiftres.py to test_pdb_shiftres.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_wc.py to test_pdb_wc.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selatom.py to test_pdb_selatom.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_rplchain.py to test_pdb_rplchain.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_delelem.py to test_pdb_delelem.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selelem.py to test_pdb_selelem.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_tofasta.py to test_pdb_tofasta.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_merge.py to test_pdb_merge.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_head.py to test_pdb_head.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selres.py to test_pdb_selres.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_sort.py to test_pdb_sort.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_b.py to test_pdb_b.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_selresname.py to test_pdb_selresname.cpython-312.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/tests/test_pdb_delres.py to test_pdb_delres.cpython-312.pyc running install_egg_info running egg_info writing pdb_tools.egg-info/PKG-INFO writing dependency_links to pdb_tools.egg-info/dependency_links.txt writing entry points to pdb_tools.egg-info/entry_points.txt writing top-level names to pdb_tools.egg-info/top_level.txt reading manifest file 'pdb_tools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' warning: no previously-included files found matching 'CONTRIBUTING.md' warning: no previously-included files found matching 'PACKING.md' warning: no previously-included files found matching 'tox.ini' no previously-included directories found matching 'docs' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '*.swp' found anywhere in distribution warning: no previously-included files matching 'tags' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pdb_tools.egg-info/SOURCES.txt' Copying pdb_tools.egg-info to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.12/dist-packages/pdb_tools-2.5.1.egg-info Skipping SOURCES.txt running install_scripts Installing __init__ script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_b script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chainbows script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chainxseg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chkensemble script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delelem script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delhetatm script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delinsertion script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delresname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_element script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_fetch script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_fixinsert script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_fromcif script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_gap script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_head script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_intersect script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_keepcoord script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_merge script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_mkensemble script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_occ script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_reatom script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_reres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_rplchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_rplresname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_seg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_segxchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selaltloc script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selatom script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selelem script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selhetatm script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selmodel script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selresname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selseg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_shiftres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_sort script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_splitchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_splitmodel script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_splitseg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_tidy script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_tocif script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_tofasta script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_uniqname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_validate script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_wc script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11 creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_fetch.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/pdbtools/pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools creating /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_chain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_element.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_tocif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_splitmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_uniqname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_delhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_fromcif.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_fixinsert.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_mkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_delchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_reres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_chkensemble.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_tidy.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_keepcoord.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selaltloc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_validate.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_splitchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_chainbows.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_segxchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/__init__.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_reatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_splitseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selhetatm.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_occ.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_gap.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_intersect.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_delresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_delinsertion.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selmodel.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_rplresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_seg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_chainxseg.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/config.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_shiftres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_wc.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selatom.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_rplchain.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_delelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selelem.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_tofasta.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_merge.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_head.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/utils.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_sort.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_b.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_selresname.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests copying /build/reproducible-path/pdb-tools-2.5.1/.pybuild/cpython3_3.11_pdbtools/build/tests/test_pdb_delres.py -> /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_head.py to pdb_head.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_gap.py to pdb_gap.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_delelem.py to pdb_delelem.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_wc.py to pdb_wc.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selseg.py to pdb_selseg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_delresname.py to pdb_delresname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selchain.py to pdb_selchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_occ.py to pdb_occ.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_chainxseg.py to pdb_chainxseg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_splitseg.py to pdb_splitseg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_reres.py to pdb_reres.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_uniqname.py to pdb_uniqname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selresname.py to pdb_selresname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_delhetatm.py to pdb_delhetatm.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_chainbows.py to pdb_chainbows.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_merge.py to pdb_merge.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_splitmodel.py to pdb_splitmodel.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selelem.py to pdb_selelem.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_rplresname.py to pdb_rplresname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selmodel.py to pdb_selmodel.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_segxchain.py to pdb_segxchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_splitchain.py to pdb_splitchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_reatom.py to pdb_reatom.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selatom.py to pdb_selatom.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_tofasta.py to pdb_tofasta.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_chain.py to pdb_chain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selres.py to pdb_selres.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_chkensemble.py to pdb_chkensemble.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selhetatm.py to pdb_selhetatm.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_shiftres.py to pdb_shiftres.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_fromcif.py to pdb_fromcif.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_mkensemble.py to pdb_mkensemble.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_delres.py to pdb_delres.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_tocif.py to pdb_tocif.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_intersect.py to pdb_intersect.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_b.py to pdb_b.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_selaltloc.py to pdb_selaltloc.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_fixinsert.py to pdb_fixinsert.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_keepcoord.py to pdb_keepcoord.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_delinsertion.py to pdb_delinsertion.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_validate.py to pdb_validate.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_sort.py to pdb_sort.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_fetch.py to pdb_fetch.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_rplchain.py to pdb_rplchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_element.py to pdb_element.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_tidy.py to pdb_tidy.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_delchain.py to pdb_delchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdbtools/pdb_seg.py to pdb_seg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_chain.py to test_pdb_chain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_element.py to test_pdb_element.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_tocif.py to test_pdb_tocif.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_splitmodel.py to test_pdb_splitmodel.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_uniqname.py to test_pdb_uniqname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selseg.py to test_pdb_selseg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_delhetatm.py to test_pdb_delhetatm.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_fromcif.py to test_pdb_fromcif.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_fixinsert.py to test_pdb_fixinsert.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_mkensemble.py to test_pdb_mkensemble.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_delchain.py to test_pdb_delchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_reres.py to test_pdb_reres.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_chkensemble.py to test_pdb_chkensemble.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_tidy.py to test_pdb_tidy.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_keepcoord.py to test_pdb_keepcoord.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selchain.py to test_pdb_selchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selaltloc.py to test_pdb_selaltloc.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_validate.py to test_pdb_validate.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_splitchain.py to test_pdb_splitchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_chainbows.py to test_pdb_chainbows.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_segxchain.py to test_pdb_segxchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_reatom.py to test_pdb_reatom.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_splitseg.py to test_pdb_splitseg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selhetatm.py to test_pdb_selhetatm.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_occ.py to test_pdb_occ.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_gap.py to test_pdb_gap.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_intersect.py to test_pdb_intersect.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_delresname.py to test_pdb_delresname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_delinsertion.py to test_pdb_delinsertion.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selmodel.py to test_pdb_selmodel.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_rplresname.py to test_pdb_rplresname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_seg.py to test_pdb_seg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_chainxseg.py to test_pdb_chainxseg.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/config.py to config.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_shiftres.py to test_pdb_shiftres.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_wc.py to test_pdb_wc.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selatom.py to test_pdb_selatom.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_rplchain.py to test_pdb_rplchain.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_delelem.py to test_pdb_delelem.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selelem.py to test_pdb_selelem.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_tofasta.py to test_pdb_tofasta.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_merge.py to test_pdb_merge.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_head.py to test_pdb_head.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selres.py to test_pdb_selres.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_sort.py to test_pdb_sort.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_b.py to test_pdb_b.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_selresname.py to test_pdb_selresname.cpython-311.pyc byte-compiling /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/tests/test_pdb_delres.py to test_pdb_delres.cpython-311.pyc running install_egg_info running egg_info writing pdb_tools.egg-info/PKG-INFO writing dependency_links to pdb_tools.egg-info/dependency_links.txt writing entry points to pdb_tools.egg-info/entry_points.txt writing top-level names to pdb_tools.egg-info/top_level.txt reading manifest file 'pdb_tools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching 'CODE_OF_CONDUCT.md' warning: no previously-included files found matching 'CONTRIBUTING.md' warning: no previously-included files found matching 'PACKING.md' warning: no previously-included files found matching 'tox.ini' no previously-included directories found matching 'docs' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '*.swp' found anywhere in distribution warning: no previously-included files matching 'tags' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pdb_tools.egg-info/SOURCES.txt' Copying pdb_tools.egg-info to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/lib/python3.11/dist-packages/pdb_tools-2.5.1.egg-info Skipping SOURCES.txt running install_scripts Installing __init__ script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_b script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chainbows script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chainxseg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_chkensemble script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delelem script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delhetatm script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delinsertion script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_delresname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_element script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_fetch script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_fixinsert script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_fromcif script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_gap script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_head script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_intersect script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_keepcoord script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_merge script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_mkensemble script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_occ script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_reatom script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_reres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_rplchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_rplresname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_seg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_segxchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selaltloc script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selatom script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selelem script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selhetatm script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selmodel script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selresname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_selseg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_shiftres script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_sort script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_splitchain script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_splitmodel script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_splitseg script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_tidy script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_tocif script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_tofasta script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_uniqname script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_validate script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin Installing pdb_wc script to /build/reproducible-path/pdb-tools-2.5.1/debian/python3-pdbtools/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pdb-tools-2.5.1' dh_install rm debian/python3-pdbtools/usr/bin/__init__ mkdir --parents debian/pdb-tools/usr mv debian/python3-pdbtools/usr/bin debian/pdb-tools/usr make[1]: Leaving directory '/build/reproducible-path/pdb-tools-2.5.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/pdb-tools-2.5.1' for PROGRAM in debian/pdb-tools/usr/bin/* ; \ do \ BASENAME=$(basename ${PROGRAM}) ; \ PYTHONPATH=. help2man ${PROGRAM} --version-string "2.5.1" --no-discard-stderr --no-info > ${BASENAME}.1 ; \ sed -i "s/ERROR!! No data to process!/${BASENAME}/" ${BASENAME}.1 ; \ sed -i "s/ERROR!!/${BASENAME}/" ${BASENAME}.1 ; \ dh_installman ${BASENAME}.1 ; \ done make[1]: Leaving directory '/build/reproducible-path/pdb-tools-2.5.1' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pdb-tools' in '../pdb-tools_2.5.1-1_all.deb'. dpkg-deb: building package 'python3-pdbtools' in '../python3-pdbtools_2.5.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../pdb-tools_2.5.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pdb-tools_2.5.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4135917 and its subdirectories I: Current time: Sat Apr 27 15:29:46 -12 2024 I: pbuilder-time-stamp: 1714274986 Sun Apr 28 03:29:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Apr 28 03:29:48 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Apr 28 03:31:49 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Apr 28 03:31:50 UTC 2024 I: pdb-tools_2.5.1-1_amd64.changes: Format: 1.8 Date: Mon, 18 Dec 2023 07:26:01 -0500 Source: pdb-tools Binary: pdb-tools python3-pdbtools Architecture: all Version: 2.5.1-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: pdb-tools - tools for manipulating and editing PDB files python3-pdbtools - tools for manipulating and editing PDB files (Python 3 package) Changes: pdb-tools (2.5.1-1) unstable; urgency=medium . * New upstream version 2.5.1 * Mention Protein Data Bank in package descriptions. * Set upstream metadata fields: Repository. * Update standards version to 4.6.2, no changes needed. * Bump copyright years. Checksums-Sha1: d17ba6e21320f742bd5cfc981455e82cbf69842c 28400 pdb-tools_2.5.1-1_all.deb f8cd452bbb69cc21f340f8dbce4cbc8dd6978c48 6076 pdb-tools_2.5.1-1_amd64.buildinfo 6c9e4cde15b35ee3a598f66c4ee5c6254f4c5383 32168 python3-pdbtools_2.5.1-1_all.deb Checksums-Sha256: dfdb096415c266b59ed0058513b71abf8e3c910c4c45674f2433b024b833863b 28400 pdb-tools_2.5.1-1_all.deb 6822278ef3ee52613dbd0c69f85436337f192d0384f4fc6ee552d42b299325a8 6076 pdb-tools_2.5.1-1_amd64.buildinfo ff620045579df6dc63df43668b246d62d991b1b725dd6f99b65fc6fb30eedc4d 32168 python3-pdbtools_2.5.1-1_all.deb Files: f18f342635b244a3f50ca1f438105834 28400 science optional pdb-tools_2.5.1-1_all.deb a0ebf40a3ded071f15cf0737a70513e7 6076 science optional pdb-tools_2.5.1-1_amd64.buildinfo a28e6153134a0a9d827cc0fd4489dfd4 32168 science optional python3-pdbtools_2.5.1-1_all.deb Sun Apr 28 03:31:51 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_1-4020.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VbIuP5hP/pdb-tools_2.5.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VbIuP5hP/pdb-tools_2.5.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VbIuP5hP/pdb-tools_2.5.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VbIuP5hP/b1/pdb-tools_2.5.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.VbIuP5hP/b2/pdb-tools_2.5.1-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 1 call diffoscope.comparators.gzip.GzipContainer ## command (total time: 0.095s) 0.066s 6 calls diff 0.020s 6 calls xz 0.003s 2 calls gzip 0.002s 1 call cmp 0.002s 1 call cmp (external) 0.001s 13 calls cmp (internal) ## compare_files (cumulative) (total time: 1.074s) 0.288s 1 call abc.DotChangesFile 0.274s 1 call abc.DebFile 0.250s 2 calls abc.XzFile 0.191s 1 call abc.DebDataTarFile 0.034s 1 call abc.TarFile 0.018s 1 call abc.GzipFile 0.009s 1 call abc.TextFile 0.009s 1 call abc.Md5sumsFile ## container_extract (total time: 0.071s) 0.041s 196 calls diffoscope.comparators.deb.DebTarContainer 0.021s 6 calls diffoscope.comparators.xz.XzContainer 0.004s 2 calls diffoscope.comparators.gzip.GzipContainer 0.003s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.003s) 0.003s 2 calls linediff ## has_same_content_as (total time: 0.004s) 0.002s 1 call abc.DebDataTarFile 0.000s 2 calls abc.DebFile 0.000s 3 calls abc.TextFile 0.000s 2 calls abc.XzFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.GzipFile ## main (total time: 0.681s) 0.674s 2 calls outputs 0.007s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## output (total time: 0.024s) 0.023s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 0.072s) 0.038s 584 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile 0.015s 308 calls diffoscope.comparators.utils.archive.ArchiveMember 0.003s 108 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.045s) 0.045s 13 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 1.024s CPU time consumed: 1.065s Sun Apr 28 03:31:52 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sun Apr 28 03:31:52 UTC 2024 E: pdb-tools failed to build reproducibly in unstable on amd64. Sun Apr 28 03:31:54 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Apr 28 03:31:54 UTC 2024 I: Submitting 8.0K b1/pdb-tools_2.5.1-1_amd64.buildinfo.asc Sun Apr 28 03:31:56 UTC 2024 I: Submitting 8.0K b2/pdb-tools_2.5.1-1_amd64.buildinfo.asc Sun Apr 28 03:32:01 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 28 03:32:01 UTC 2024 I: Done submitting .buildinfo files. Sun Apr 28 03:32:01 UTC 2024 I: Removing signed pdb-tools_2.5.1-1_amd64.buildinfo.asc files: removed './b1/pdb-tools_2.5.1-1_amd64.buildinfo.asc' removed './b2/pdb-tools_2.5.1-1_amd64.buildinfo.asc'