Tue May 7 10:58:26 UTC 2024 I: starting to build picard-tools/unstable/amd64 on jenkins on '2024-05-07 10:58' Tue May 7 10:58:26 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/8044/console.log Tue May 7 10:58:26 UTC 2024 I: Downloading source for unstable/picard-tools=3.1.1+dfsg-1 --2024-05-07 10:58:27-- http://deb.debian.org/debian/pool/main/p/picard-tools/picard-tools_3.1.1%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2737 (2.7K) [text/prs.lines.tag] Saving to: ‘picard-tools_3.1.1+dfsg-1.dsc’ 0K .. 100% 392M=0s 2024-05-07 10:58:27 (392 MB/s) - ‘picard-tools_3.1.1+dfsg-1.dsc’ saved [2737/2737] Tue May 7 10:58:27 UTC 2024 I: picard-tools_3.1.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: picard-tools Binary: picard-tools, libpicard-java, libpicard-java-doc Architecture: all Version: 3.1.1+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Olivier Sallou , Vincent Danjean , Andreas Tille , Steffen Moeller , Pierre Gruet Homepage: https://broadinstitute.github.io/picard/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/picard-tools Vcs-Git: https://salsa.debian.org/med-team/picard-tools.git Testsuite: autopkgtest Build-Depends: default-jdk, debhelper-compat (= 13), javahelper, gradle-debian-helper, maven-repo-helper, libguava-java, libcommons-collections4-java, libcommons-io-java, libcommons-lang-java, libcommons-lang3-java, libcommons-math3-java, libbarclay-java, libgkl-java, libgkl-jni [amd64], libgatk-native-bindings-java, libhtsjdk-java (>= 3.0.2+dfsg), libjoptsimple-java, testng, r-base-core, default-jdk-doc, libhtsjdk-java-doc, libjs-jquery Package-List: libpicard-java deb java optional arch=all libpicard-java-doc deb doc optional arch=all picard-tools deb science optional arch=all Checksums-Sha1: dfe83c23873a5cc476a4e066b88e3af67e38639d 20419852 picard-tools_3.1.1+dfsg.orig.tar.xz 6a2f6d16131ab0f8b60324b3efac4d2c1978db0b 22772 picard-tools_3.1.1+dfsg-1.debian.tar.xz Checksums-Sha256: 3360065cec9d152ed3445b93f228b716c0be3018406ebf8e742e5da907151209 20419852 picard-tools_3.1.1+dfsg.orig.tar.xz e76aca503be04dda1795b023aad8f491319e3b41553311517fc1e2ef3b3a143e 22772 picard-tools_3.1.1+dfsg-1.debian.tar.xz Files: 4c2ab8018a847e95b5495ed38a7d8109 20419852 picard-tools_3.1.1+dfsg.orig.tar.xz f7f70351901d0ef3ae7566d24b007db2 22772 picard-tools_3.1.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmV+GRMACgkQYAMWptwn dHZDvxAAhErCHrPuCPnYkQxgt1t+0Ow7iMZdtv0Rp6XGpEUKU8qfvOE/oBYFNizd v+k6S6wWRH5WMa3wnYs3b/nCeul7WXTSibtlryC8db86+VyVsTC54LtEz77TnGB/ nsbJoOjBjdQ9tLbdg7wGV78l+vUTeUYb7+1lw+mWZ9UUMp/aVU0sNsh4bpCmSILb Jk59OzpHIY+V97c4HNg83XCgdW7SWvIZwfYy40vSSY/VY+OcpjHXuwC5KQot/fUP xEJ0vW9xnxIrsELhCDRywJmocB0ApMyD3Hu26MJHTAn9G9UUX4I9o/1hDzcI8cD4 v29pDbJbpa0MNNPou/+JD+cFI+DThUhNnUZt/rE8Lv1lXvaO3H4ekvm6I6Ii2jbc pjJf+RNuxJaY64tFwhKOA/DJA238dt2on61GgrNK2SlijTNSo0WwlzjYxTHTxS3U ymA6+twv52mbSAIvqKBBYg40gZiYZDRttZyGLJCN8Jx1ZWslvnHhBwQt/ONPNMwp FLYz2HVsLXcJwBa4TiYolG9TTIXUyxUjZ7WGV9ZysSp6ZeuSxOcx7TtaOOheeZWL hxTQnMG1iRD3/i4aQh7P+njJBCAuYMozpSP+b8/xZEPl3zvxxy+QM9RfBYw/MkKI cZtTnL/a8OG57QjjtJ1rAHq5o2fNHAyHLUnn00NWTBPop/MJzEY= =mnJp -----END PGP SIGNATURE----- Tue May 7 10:58:27 UTC 2024 I: Checking whether the package is not for us Tue May 7 10:58:27 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue May 7 10:58:27 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue May 7 11:05:51 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 6 22:58:29 -12 2024 I: pbuilder-time-stamp: 1715079509 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [picard-tools_3.1.1+dfsg-1.dsc] I: copying [./picard-tools_3.1.1+dfsg.orig.tar.xz] I: copying [./picard-tools_3.1.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 16 21:39:31 2023 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./picard-tools_3.1.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting picard-tools in picard-tools-3.1.1+dfsg dpkg-source: info: unpacking picard-tools_3.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking picard-tools_3.1.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10-build.patch dpkg-source: info: applying 20-shadowjar.patch dpkg-source: info: applying 30-tests-fix-dataprovider.patch dpkg-source: info: applying 40-tests-fix-testng.patch dpkg-source: info: applying remove_google_nio.patch dpkg-source: info: applying fix_unreadabletests.patch dpkg-source: info: applying 60-tests-exclude-network.patch dpkg-source: info: applying non-intel-skip-intel-tests dpkg-source: info: applying correct_dataprovider_TestDontMergeAbuttingData.patch dpkg-source: info: applying com_sun_javadoc_removal_in_openjdk17.patch dpkg-source: info: applying gradle_openjdk17_incompatibility.patch dpkg-source: info: applying omit_BamToBfq.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2008047/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e1f4bb6e9b6e4ca7b636ef37c780265b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2008047' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lT6ucl0X/pbuilderrc_rJ7g --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lT6ucl0X/b1 --logfile b1/build.log picard-tools_3.1.1+dfsg-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2008047/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: default-jdk, debhelper-compat (= 13), javahelper, gradle-debian-helper, maven-repo-helper, libguava-java, libcommons-collections4-java, libcommons-io-java, libcommons-lang-java, libcommons-lang3-java, libcommons-math3-java, libbarclay-java, libgkl-java, libgkl-jni, libgatk-native-bindings-java, libhtsjdk-java (>= 3.0.2+dfsg), libjoptsimple-java, testng, r-base-core, default-jdk-doc, libhtsjdk-java-doc, libjs-jquery dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on libguava-java; however: Package libguava-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-collections4-java; however: Package libcommons-collections4-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-io-java; however: Package libcommons-io-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-lang-java; however: Package libcommons-lang-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-lang3-java; however: Package libcommons-lang3-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however: Package libcommons-math3-java is not installed. pbuilder-satisfydepends-dummy depends on libbarclay-java; however: Package libbarclay-java is not installed. pbuilder-satisfydepends-dummy depends on libgkl-java; however: Package libgkl-java is not installed. pbuilder-satisfydepends-dummy depends on libgkl-jni; however: Package libgkl-jni is not installed. pbuilder-satisfydepends-dummy depends on libgatk-native-bindings-java; however: Package libgatk-native-bindings-java is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java (>= 3.0.2+dfsg); however: Package libhtsjdk-java is not installed. pbuilder-satisfydepends-dummy depends on libjoptsimple-java; however: Package libjoptsimple-java is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. pbuilder-satisfydepends-dummy depends on r-base-core; however: Package r-base-core is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-doc; however: Package default-jdk-doc is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java-doc; however: Package libhtsjdk-java-doc is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} ant-optional{a} antlr{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-doc{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} ivy{a} jarwrapper{a} java-common{a} java-wrappers{a} javahelper{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan0{a} libatinject-jsr330-api-java{a} libatk1.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbarclay-java{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libblas3{a} libbrotli1{a} libbsd0{a} libbsf-java{a} libbsh-java{a} libcairo2{a} libcdi-api-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-collections4-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdatrie1{a} libdbus-1-3{a} libdd-plist-java{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libeclipse-jdt-annotation-java{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} liberror-prone-java{a} libexpat1{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreemarker-java{a} libfreetype6{a} libfribidi0{a} libgatk-native-bindings-java{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgfortran5{a} libgif7{a} libgkl-java{a} libgkl-jni{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk2.0-0t64{a} libgtk2.0-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhtsjdk-java{a} libhtsjdk-java-doc{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libice6{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjbig0{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjetty9-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjoptsimple-java{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-jquery-ui-theme-base{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblightcouch-java{a} libllvm17t64{a} liblog4j2-java{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libminlog-java{a} libmjson-java{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libnative-platform-java{a} libnative-platform-jni{a} libncbi-ngs3{a} libncbi-vdb3{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libngs-java{a} libngs-jni{a} libnpth0t64{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16t64{a} libpolyglot-maven-java{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqdox-java{a} libreadline8t64{a} libreflectasm-java{a} librhino-java{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsm6{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libssh2-1t64{a} libsub-override-perl{a} libsub-quote-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebp7{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxstream-java{a} libxt6t64{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} libz3-4{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} ncbi-vdb-data{a} netbase{a} openjdk-17-doc{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} shared-mime-info{a} testng{a} tzdata{a} ucf{a} unzip{a} wdiff{a} x11-common{a} xdg-utils{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libdata-dump-perl libdistro-info-perl libfile-mimeinfo-perl libgail-common libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgtk2.0-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnet-dbus-perl libreflectasm-java-doc librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libx11-protocol-perl libxstring-perl libxt-dev licensecheck lintian lynx mesa-vulkan-drivers pristine-tar publicsuffix python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg r-base-dev r-doc-html r-recommended strace wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 392 newly installed, 0 to remove and 0 not upgraded. Need to get 359 MB of archives. After unpacking 1195 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [307 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.0-9 [1481 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-4 [759 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-3+b3 [138 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gtk-update-icon-cache amd64 3.24.41-4 [46.6 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 adwaita-icon-theme all 46.0-1 [614 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 java-common all 0.75 [6640 B] Get: 47 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnspr4 amd64 2:4.35-1.1+b1 [109 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libnss3 amd64 2:3.99-1 [1408 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libpcsclite1 amd64 2.2.0-1 [54.7 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 openjdk-17-jre-headless amd64 17.0.11+9-1 [43.8 MB] Get: 52 http://deb.debian.org/debian unstable/main amd64 default-jre-headless amd64 2:1.17-75 [3068 B] Get: 53 http://deb.debian.org/debian unstable/main amd64 ant all 1.10.14-1 [2162 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 ant-optional all 1.10.14-1 [455 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libantlr-java all 2.7.7+dfsg-13 [458 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 antlr all 2.7.7+dfsg-13 [8272 B] Get: 57 http://deb.debian.org/debian unstable/main amd64 at-spi2-common all 2.52.0-1 [166 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 java-wrappers all 0.4 [8916 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 junit4 all 4.13.2-4 [349 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libfelix-framework-java all 4.6.1-2.1 [569 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libfelix-gogo-runtime-java all 0.16.2-1.1 [114 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libosgi-annotation-java all 8.1.0-1 [9436 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 libosgi-core-java all 8.0.0-2 [182 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfelix-resolver-java all 1.16.0-1 [180 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libhawtjni-runtime-java all 1.18-1 [36.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libjansi-native-java all 1.8-2 [26.0 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libjansi1-java all 1.18-3 [66.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libjline2-java all 2.14.6-5 [151 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libosgi-compendium-java all 7.0.0-1 [477 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxz-java all 1.9-1 [143 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libyaml-snake-java all 1.33-2 [321 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 bnd all 5.0.1-5 [10.1 MB] Get: 81 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 89 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libgtk2.0-common all 2.24.33-4 [2661 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libatk1.0-0t64 amd64 2.52.0-1 [50.8 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-1 [114 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-1 [105 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 123 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [218 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [48.1 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [35.0 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libxcomposite1 amd64 1:0.4.5-1+b1 [14.9 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libxcursor1 amd64 1:1.2.1-1+b1 [36.2 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libxdamage1 amd64 1:1.1.6-1+b1 [15.5 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libxinerama1 amd64 2:1.1.4-3+b1 [16.0 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libxrandr2 amd64 2:1.5.4-1 [36.1 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libgtk2.0-0t64 amd64 2.24.33-4 [1816 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get: 146 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.0.6-1+b1 [36.6 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-1 [106 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-1 [106 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-1 [122 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-1 [105 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-1 [116 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-1 [108 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-1 [109 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get: 157 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.3.280.0-1 [123 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.0.6-1+b1 [8279 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.0.6-1+b1 [151 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libasound2-data all 1.2.11-1 [20.9 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libasound2t64 amd64 1.2.11-1+b1 [369 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libgif7 amd64 5.2.2-1 [43.9 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libxtst6 amd64 2:1.2.3-1.1+b1 [25.9 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 openjdk-17-jre amd64 17.0.11+9-1 [185 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 default-jre amd64 2:1.17-75 [1056 B] Get: 180 http://deb.debian.org/debian unstable/main amd64 openjdk-17-jdk-headless amd64 17.0.11+9-1 [71.4 MB] Get: 181 http://deb.debian.org/debian unstable/main amd64 default-jdk-headless amd64 2:1.17-75 [1108 B] Get: 182 http://deb.debian.org/debian unstable/main amd64 openjdk-17-jdk amd64 17.0.11+9-1 [10.4 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 default-jdk amd64 2:1.17-75 [1068 B] Get: 184 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui-theme-base all 1.12.1+dfsg-1.1 [44.3 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 openjdk-17-doc all 17.0.11+9-1 [12.8 MB] Get: 188 http://deb.debian.org/debian unstable/main amd64 default-jdk-doc amd64 2:1.17-75 [3148 B] Get: 189 http://deb.debian.org/debian unstable/main amd64 libassuan0 amd64 2.5.6-1+b1 [50.4 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 gpgconf amd64 2.2.40-3 [565 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libksba8 amd64 1.6.6-1 [131 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libnpth0t64 amd64 1.6-3.1 [17.9 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 dirmngr amd64 2.2.40-3 [793 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 gnupg-l10n all 2.2.40-3 [1094 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 gnupg-utils amd64 2.2.40-3 [928 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 gpg amd64 2.2.40-3 [950 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 pinentry-curses amd64 1.2.1-3+b2 [78.3 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 gpg-agent amd64 2.2.40-3 [695 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 gpg-wks-client amd64 2.2.40-3 [541 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 gpg-wks-server amd64 2.2.40-3 [532 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 gpgsm amd64 2.2.40-3 [671 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 gnupg all 2.2.40-3 [847 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 207 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libfile-touch-perl all 0.12-2 [8816 B] Get: 210 http://deb.debian.org/debian unstable/main amd64 libio-pty-perl amd64 1:1.20-1+b1 [34.4 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b3 [36.2 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1 [15.9 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libhtml-parser-perl amd64 3.82-1 [98.9 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 238 http://deb.debian.org/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 wdiff amd64 1.2.2-6 [119 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 devscripts all 2.23.7 [1068 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 fastjar amd64 2:0.98-7 [80.1 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 ivy all 2.5.2-1 [1295 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libasm-java all 9.7-1 [394 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 29-2 [5276 B] Get: 254 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libjansi-java all 2.4.1-2 [100 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libqdox-java all 1.12.1-3 [172 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libxpp3-java all 1.1.4c-3 [292 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libxstream-java all 1.4.20-1 [565 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 groovy all 2.4.21-10 [12.8 MB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 264 http://deb.debian.org/debian unstable/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libcommons-compress-java all 1.25.0-1 [635 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libcommons-io-java all 2.16.1-1 [480 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libcommons-lang-java all 2.6-10 [273 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libcommons-codec-java all 1.16.0-1 [297 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libjarjar-java all 1.4+svn142-12 [205 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libjcip-annotations-java all 20060626-6 [11.8 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 libjna-jni amd64 5.14.0-1 [64.0 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libjna-java all 5.14.0-1 [237 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 libjzlib-java all 1.1.3-3 [79.4 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 libjsch-java all 0.1.55-1 [298 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 libminlog-java all 1.3.0-1.1 [7928 B] Get: 281 http://deb.debian.org/debian unstable/main amd64 libobjenesis-java all 3.3-3 [41.3 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 libreflectasm-java all 1.11.9+dfsg-4 [25.0 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 libkryo-java all 2.20-7 [158 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 liblogback-java all 1:1.2.11-5 [701 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libnative-platform-jni amd64 0.14-6 [11.5 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libnative-platform-java all 0.14-6 [69.8 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libnekohtml-java all 1.9.22.noko2-0.1 [125 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 libxbean-reflect-java all 4.5-8 [133 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 libgradle-core-java all 4.4.1-20 [4293 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 libbcprov-java all 1.77-1 [5300 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 libbcpg-java all 1.77-1 [428 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 libbsh-java all 2.0b4-20 [291 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 libdd-plist-java all 1.20-1.1 [72.6 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 libdom4j-java all 2.1.4-1 [312 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 libbcel-java all 6.5.0-2 [634 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libjformatstring-java all 0.10~20131207-2.1 [34.5 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 libfindbugs-java all 3.1.0~preview2-3 [3502 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libaopalliance-java all 20070526-7 [8572 B] Get: 304 http://deb.debian.org/debian unstable/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 libjatl-java all 0.2.3-1.1 [29.0 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libjcifs-java all 1.3.19-2 [394 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libeclipse-jdt-annotation-java all 2.2.700+eclipse4.26-2 [25.3 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 libjavaewah-java all 1.2.3-1 [159 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 libel-api-java all 3.0.0-3 [64.9 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 libjetty9-java all 9.4.54-1 [2980 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libjgit-java all 4.11.9-2 [2534 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libcommons-lang3-java all 3.14.0-1 [621 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libmaven-resolver-java all 1.6.3-1 [548 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 libmaven-parent-java all 35-1 [6140 B] Get: 319 http://deb.debian.org/debian unstable/main amd64 libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 323 http://deb.debian.org/debian unstable/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 326 http://deb.debian.org/debian unstable/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libmaven3-core-java all 3.8.7-2 [1573 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libpolyglot-maven-java all 0.8~tobrien+git20120905-10 [74.9 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 librhino-java all 1.7.14-2.1 [1357 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 libsimple-http-java all 4.1.21-1.1 [211 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libwagon-file-java all 3.5.3-1 [8388 B] Get: 335 http://deb.debian.org/debian unstable/main amd64 libjsoup-java all 1.15.3-1 [431 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 libjcommander-java all 1.71-4 [73.0 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 testng all 6.9.12-4 [795 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libgradle-plugins-java all 4.4.1-20 [5206 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 gradle all 4.4.1-20 [398 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 gradle-debian-helper all 2.4 [24.5 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 jarwrapper all 0.79 [10.1 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 javahelper all 0.79 [84.6 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 libfreemarker-java all 2.3.32-2 [1546 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 libjoptsimple-java all 5.0.4-4 [73.1 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 liblightcouch-java all 0.2.0-1 [75.0 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 libbarclay-java all 5.0.0+dfsg-1 [108 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 libcommons-collections4-java all 4.4-2 [682 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 libgatk-native-bindings-java all 1.0.0+dfsg-2 [8024 B] Get: 361 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14-20240429-1 [836 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 libncbi-vdb3 amd64 3.0.2+dfsg-2+b1 [1049 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 libncbi-ngs3 amd64 3.0.3+dfsg-7 [155 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 libngs-jni amd64 3.0.3+dfsg-7 [23.6 kB] Get: 370 http://deb.debian.org/debian unstable/main amd64 libngs-java amd64 3.0.3+dfsg-7 [110 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 libsnappy1v5 amd64 1.2.0-2 [29.0 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 libsnappy-jni amd64 1.1.10.5-2 [6396 B] Get: 373 http://deb.debian.org/debian unstable/main amd64 libsnappy-java all 1.1.10.5-2 [87.5 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 libhtsjdk-java all 4.1.0+dfsg-1 [1833 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 libgkl-java all 0.8.11+dfsg-2 [24.7 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 libgkl-jni amd64 0.8.11+dfsg-2 [237 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 libhtsjdk-java-doc all 4.1.0+dfsg-1 [1044 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get: 381 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B] Get: 382 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 383 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 384 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 385 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 386 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 387 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get: 388 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 389 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 390 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-13 [230 kB] Get: 391 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 392 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.0-2 [28.2 MB] Fetched 359 MB in 41s (8792 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../binfmt-support_2.2.2-7_amd64.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21030 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../013-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../014-libglib2.0-0t64_2.80.0-9_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.80.0-9) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../015-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../016-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../017-shared-mime-info_2.4-4_amd64.deb ... Unpacking shared-mime-info (2.4-4) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../018-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ... Selecting previously unselected package libpng16-16t64:amd64. 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Preparing to unpack .../025-libtiff6_4.5.1+git230720-4_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-4) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. Preparing to unpack .../026-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3+b3_amd64.deb ... Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b3) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../027-gtk-update-icon-cache_3.24.41-4_amd64.deb ... Unpacking gtk-update-icon-cache (3.24.41-4) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../028-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../029-adwaita-icon-theme_46.0-1_all.deb ... Unpacking adwaita-icon-theme (46.0-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../030-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package java-common. Preparing to unpack .../031-java-common_0.75_all.deb ... Unpacking java-common (0.75) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../032-liblcms2-2_2.14-2+b1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.14-2+b1) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../033-libnspr4_2%3a4.35-1.1+b1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.35-1.1+b1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../034-libnss3_2%3a3.99-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.99-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../035-libpcsclite1_2.2.0-1_amd64.deb ... Unpacking libpcsclite1:amd64 (2.2.0-1) ... Selecting previously unselected package openjdk-17-jre-headless:amd64. Preparing to unpack .../036-openjdk-17-jre-headless_17.0.11+9-1_amd64.deb ... Unpacking openjdk-17-jre-headless:amd64 (17.0.11+9-1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../037-default-jre-headless_2%3a1.17-75_amd64.deb ... Unpacking default-jre-headless (2:1.17-75) ... Selecting previously unselected package ant. Preparing to unpack .../038-ant_1.10.14-1_all.deb ... Unpacking ant (1.10.14-1) ... Selecting previously unselected package ant-optional. Preparing to unpack .../039-ant-optional_1.10.14-1_all.deb ... Unpacking ant-optional (1.10.14-1) ... Selecting previously unselected package libantlr-java. Preparing to unpack .../040-libantlr-java_2.7.7+dfsg-13_all.deb ... Unpacking libantlr-java (2.7.7+dfsg-13) ... Selecting previously unselected package antlr. Preparing to unpack .../041-antlr_2.7.7+dfsg-13_all.deb ... Unpacking antlr (2.7.7+dfsg-13) ... Selecting previously unselected package at-spi2-common. Preparing to unpack .../042-at-spi2-common_2.52.0-1_all.deb ... Unpacking at-spi2-common (2.52.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../043-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../044-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../045-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../046-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../047-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package unzip. Preparing to unpack .../048-unzip_6.0-28_amd64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package java-wrappers. Preparing to unpack .../049-java-wrappers_0.4_all.deb ... Unpacking java-wrappers (0.4) ... 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Setting up libjcip-annotations-java (20060626-6) ... Setting up libobjenesis-java (3.3-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libaopalliance-java (20070526-7) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up libio-pty-perl (1:1.20-1+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up liblogback-java (1:1.2.11-5) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libminlog-java (1.3.0-1.1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:amd64 (1.7.0-1+b1) ... Setting up libgoogle-gson-java (2.10.1-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libmjson-java (1.4.0-3) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libasm-java (9.7-1) ... Setting up libjs-jquery-ui-theme-base (1.12.1+dfsg-1.1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libsensors-config (1:3.6.0-9) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.61.0-1+b1) ... Setting up libdeflate0:amd64 (1.20-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libdd-plist-java (1.20-1.1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libel-api-java (3.0.0-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up libcom-err2:amd64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libpolyglot-maven-java (0.8~tobrien+git20120905-10) ... Setting up libfelix-gogo-runtime-java (0.16.2-1.1) ... Setting up libassuan0:amd64 (2.5.6-1+b1) ... Setting up libjzlib-java (1.1.3-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libsnappy1v5:amd64 (1.2.0-2) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue May 7 11:04:11 UTC 2024. Universal Time is now: Tue May 7 11:04:11 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up libasound2-data (1.2.11-1) ... Setting up libjsch-java (0.1.55-1) ... Setting up libgkl-jni (0.8.11+dfsg-2) ... Setting up libreflectasm-java (1.11.9+dfsg-4) ... Setting up zip (3.0-13) ... Setting up librhino-java (1.7.14-2.1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.80.0-9) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libbsf-java (1:2.4.0-8) ... Setting up libosgi-annotation-java (8.1.0-1) ... Setting up libjformatstring-java (0.10~20131207-2.1) ... Setting up libasound2t64:amd64 (1.2.11-1+b1) ... Setting up libjavaewah-java (1.2.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libnspr4:amd64 (2:4.35-1.1+b1) ... Setting up gnupg-l10n (2.2.40-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libeclipse-jdt-annotation-java (2.2.700+eclipse4.26-2) ... Setting up libjansi-java (2.4.1-2) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-13+b2) ... Setting up libxpp3-java (1.1.4c-3) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.14.10-4+b1) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libkryo-java (2.20-7) ... Setting up libxz-java (1.9-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libjna-jni (5.14.0-1) ... Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libfelix-framework-java (4.6.1-2.1) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:amd64 (2.2.0-1) ... Setting up libsensors5:amd64 (1:3.6.0-9) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libhamcrest-java (2.2-2) ... Setting up libglapi-mesa:amd64 (24.0.6-1+b1) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240429-1) ... Setting up libvulkan1:amd64 (1.3.280.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libgif7:amd64 (5.2.2-1) ... Setting up libjarjar-java (1.4+svn142-12) ... Setting up dwz (0.15-1+b1) ... Setting up libfreemarker-java (2.3.32-2) ... Setting up sensible-utils (0.0.22) ... Setting up libxshmfence1:amd64 (1.3-1+b1) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.52.0-1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up libjna-java (5.14.0-1) ... Setting up libxbean-reflect-java (4.5-8) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libnative-platform-jni (0.14-6) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libgtk2.0-common (2.24.33-4) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libjoptsimple-java (5.0.4-4) ... Setting up libbcpg-java (1.77-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libantlr-java (2.7.7+dfsg-13) ... Setting up libyaml-snake-java (1.33-2) ... Setting up openssl (3.2.1-3) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libcdi-api-java (1.2-3) ... Setting up libsnappy-jni (1.1.10.5-2) ... Setting up readline-common (8.2-4) ... Setting up libhawtjni-runtime-java (1.18-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.28-1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libjatl-java (0.2.3-1.1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-3+b2) ... Setting up libdom4j-java (2.1.4-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libnative-platform-java (0.14-6) ... Setting up libosgi-core-java (8.0.0-2) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxstream-java (1.4.20-1) ... Setting up libnekohtml-java (1.9.22.noko2-0.1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libjetty9-java (9.4.54-1) ... Setting up libxcb-xfixes0:amd64 (1.17.0-1) ... Setting up java-wrappers (0.4) ... Setting up libatk1.0-0t64:amd64 (2.52.0-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libosgi-compendium-java (7.0.0-1) ... Setting up jarwrapper (0.79) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.17.0-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libxcb-glx0:amd64 (1.17.0-1) ... Setting up libmaven-parent-java (35-1) ... Setting up libedit2:amd64 (3.1-20230828-1+b1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-13+b2) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:amd64 (2:3.99-1) ... Setting up libxcb-shm0:amd64 (1.17.0-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:amd64 (1.17.0-1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libbcel-java (6.5.0-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-12) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libxcb-sync1:amd64 (1.17.0-1) ... Setting up testng (6.9.12-4) ... Setting up shared-mime-info (2.4-4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libcommons-collections4-java (4.4-2) ... Setting up ucf (3.0043+nmu1) ... Setting up libcommons-lang3-java (3.14.0-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libxcb-dri2-0:amd64 (1.17.0-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libfelix-resolver-java (1.16.0-1) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up libjansi-native-java (1.8-2) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxcb-randr0:amd64 (1.17.0-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up openjdk-17-doc (17.0.11+9-1) ... Setting up libjansi1-java (1.18-3) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b3) ... Setting up libsnappy-java (1.1.10.5-2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-1) ... Setting up libcommons-codec-java (1.16.0-1) ... Setting up libjline2-java (2.14.6-5) ... Setting up libxcomposite1:amd64 (1:0.4.5-1+b1) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libavahi-client3:amd64 (0.8-13+b2) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up gnupg-utils (2.2.40-3) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libxcb-dri3-0:amd64 (1.17.0-1) ... Setting up libpaper1:amd64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.41-4) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1+b1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.120-2) ... Setting up libfindbugs-java (3.1.0~preview2-3) ... Setting up libxdamage1:amd64 (1:1.1.6-1+b1) ... Setting up gpg-agent (2.2.40-3) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libcommons-compress-java (1.25.0-1) ... Setting up libcurl4t64:amd64 (8.7.1-5) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libcommons-io-java (2.16.1-1) ... Setting up libdrm-radeon1:amd64 (2.4.120-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up gpgsm (2.2.40-3) ... Setting up libpango-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libdrm-intel1:amd64 (2.4.120-2) ... Setting up libgl1-mesa-dri:amd64 (24.0.6-1+b1) ... Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up default-jdk-doc (2:1.17-75) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up dirmngr (2.2.40-3) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b1) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up libxrandr2:amd64 (2:1.5.4-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up gpg-wks-server (2.2.40-3) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libcups2t64:amd64 (2.4.7-1.2+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libncbi-ngs3:amd64 (3.0.3+dfsg-7) ... Setting up python3.11 (3.11.9-1) ... Setting up libjgit-java (4.11.9-2) ... Setting up libngs-jni:amd64 (3.0.3+dfsg-7) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libglx-mesa0:amd64 (24.0.6-1+b1) ... Setting up libxi6:amd64 (2:1.8.1-1) ... Setting up gpg-wks-client (2.2.40-3) ... Setting up libglx0:amd64 (1.7.0-1+b1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libxtst6:amd64 (2:1.2.3-1.1+b1) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up libxcursor1:amd64 (1:1.2.1-1+b1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libgl1:amd64 (1.7.0-1+b1) ... Setting up r-base-core (4.4.0-2) ... Creating config file /etc/R/Renviron with new version Setting up libgtk2.0-0t64:amd64 (2.24.33-4) ... Setting up gnupg (2.2.40-3) ... Setting up libngs-java:amd64 (3.0.3+dfsg-7) ... Setting up libhtsjdk-java (4.1.0+dfsg-1) ... Setting up libbarclay-java (5.0.0+dfsg-1) ... Setting up libgkl-java (0.8.11+dfsg-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.23.7) ... Setting up libguava-java (32.0.1-1) ... Setting up javahelper (0.79) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (4.2.3-2) ... Setting up libmaven3-core-java (3.8.7-2) ... Processing triggers for libc-bin (2.38-8) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up maven-repo-helper (1.11) ... Setting up antlr (2.7.7+dfsg-13) ... Setting up openjdk-17-jdk-headless:amd64 (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up ivy (2.5.2-1) ... Setting up ant (1.10.14-1) ... Setting up junit4 (4.13.2-4) ... Setting up groovy (2.4.21-10) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:amd64 (17.0.11+9-1) ... Setting up default-jre (2:1.17-75) ... Setting up openjdk-17-jdk:amd64 (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ant-optional (1.10.14-1) ... Setting up bnd (5.0.1-5) ... Setting up default-jdk-headless (2:1.17-75) ... Setting up libgradle-core-java (4.4.1-20) ... Setting up libgradle-plugins-java (4.4.1-20) ... Setting up gradle (4.4.1-20) ... Setting up default-jdk (2:1.17-75) ... Setting up gradle-debian-helper (2.4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/picard-tools-3.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../picard-tools_3.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package picard-tools dpkg-buildpackage: info: source version 3.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=gradle --with javahelper,maven_repo_helper dh_auto_clean -O--buildsystem=gradle sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/reproducible-path/picard-tools-3.1.1\+dfsg/.gradle /build/reproducible-path/picard-tools-3.1.1\+dfsg/buildSrc/.gradle .m2 dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/picard-tools-3.1.1+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/picard-tools.substvars debian/libpicard-java.substvars debian/libpicard-java-doc.substvars debian/files rm -fr -- debian/picard-tools/ debian/tmp/ debian/libpicard-java/ debian/libpicard-java-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) # also remove bai files that are left after tests # find testdata -iname "*.bai" -exec rm {} \; # This needs to be more fine grained since testdata/picard/indices/index_test_b.bam.bai needs to stay! rm -f debian/bd-temp-substvars rm -f debian/bd.substvars make[1]: Leaving directory '/build/reproducible-path/picard-tools-3.1.1+dfsg' debian/rules binary dh binary --buildsystem=gradle --with javahelper,maven_repo_helper dh_update_autotools_config -O--buildsystem=gradle dh_autoreconf -O--buildsystem=gradle dh_auto_configure -O--buildsystem=gradle jh_linkjars -O--buildsystem=gradle debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/picard-tools-3.1.1+dfsg' blhc: ignore-line-regexp: .*gradle.*ScriptTransformer.* dh_auto_build -- jar javadoc mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar javadoc openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 1.89 secs. The client will now receive all logging from the daemon (pid: 2155951). The daemon log file: /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2155951.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 20 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2e783cc9 Creating new cache for resourceHashesCache, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2e783cc9 Creating new cache for fileHashes, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@787805f6 Starting Build Compiling initialization script '/build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5d96c56b Compiling initialization script '/build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/picard-tools-3.1.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/picard-tools-3.1.1+dfsg/settings.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/picard-tools-3.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/picard-tools-3.1.1+dfsg/build.gradle'. Included projects: [root project 'picard'] Keep-alive timer started Adding Debian repository to project 'picard' Parallel execution is an incubating feature. Evaluating root project 'picard' using build file '/build/reproducible-path/picard-tools-3.1.1+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/picard-tools-3.1.1+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/picard-tools-3.1.1+dfsg/build.gradle' using BuildScriptTransformer. Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/reproducible-path/picard-tools-3.1.1+dfsg Command: dpkg-parsechangelog -S Version Successfully started process 'command 'dpkg-parsechangelog'' build for version:3.1.1 Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@16823294 Loading the Maven rules... Replacing com.intel.gkl:gkl:jar:0.8.11 -> com.intel.gkl:gkl:jar:debian Replacing org.broadinstitute:gatk-native-bindings:jar:1.0.0 -> org.broadinstitute:gatk-native-bindings:jar:debian Replacing com.google.guava:guava:jar:32.1.1-jre -> com.google.guava:guava:jar:debian Passing through com.google.guava:guava-parent:jar:debian Replacing org.apache.commons:commons-math3:jar:3.6.1 -> org.apache.commons:commons-math3:jar:debian Replacing org.apache.commons:commons-collections4:jar:4.4 -> org.apache.commons:commons-collections4:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing com.github.samtools:htsjdk:jar:4.0.2 -> com.github.samtools:htsjdk:jar:debian Replacing org.broadinstitute:barclay:jar:5.0.0 -> org.broadinstitute:barclay:jar:debian Replacing org.apache.logging.log4j:log4j-api:jar:2.20.0 -> org.apache.logging.log4j:log4j-api:jar:debian Passing through org.apache.logging.log4j:log4j:jar:debian Passing through org.apache.logging.log4j:log4j-bom:jar:debian Replacing org.apache.logging.log4j:log4j-core:jar:2.20.0 -> org.apache.logging.log4j:log4j-core:jar:debian Ignoring org.openjdk.nashorn:nashorn-core:jar:15.4 Replacing org.apache.commons:commons-lang3:jar:3.12.0 -> org.apache.commons:commons-lang3:jar:debian Ignoring com.google.cloud:google-cloud-nio:jar:0.127.0 Replacing commons-io:commons-io:jar:2.11.0 -> commons-io:commons-io:jar:debian Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Passing through org.apache.commons:commons-jexl:jar:debian Passing through commons-logging:commons-logging:jar:debian Passing through org.xerial.snappy:snappy-java:jar:debian Passing through org.apache.commons:commons-compress:jar:debian Passing through org.tukaani:xz:jar:debian Passing through gov.nih.nlm.ncbi:ngs-java:jar:debian Passing through org.sharegov:mjson:jar:debian Passing through net.sf.jopt-simple:jopt-simple:jar:debian Passing through com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian Passing through org.freemarker:freemarker:jar:debian Adding Maven pom generation to project 'picard' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@507bf5e3 Selected primary task 'javadoc' from project : Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar', task ':javadoc'] Creating new cache for resourceHashesCache, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@787805f6 Creating new cache for taskHistory, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@55fa7dd9 Creating new cache for outputFiles, path /build/reproducible-path/picard-tools-3.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@2eba97ea :compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.012 secs. Malformed jar [htsjdk-debian.jar] found on classpath. Gradle 5.0 will no longer allow malformed jars on a classpath. at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashMalformedZip(AbstractClasspathSnapshotBuilder.java:120) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashJarContents(AbstractClasspathSnapshotBuilder.java:115) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hash(AbstractClasspathSnapshotBuilder.java:93) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder.visitJar(AbstractClasspathSnapshotBuilder.java:83) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder.visitFileSnapshot(AbstractClasspathSnapshotBuilder.java:76) at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter$FileCollectionVisitorImpl.visitCollection(AbstractFileCollectionSnapshotter.java:77) at org.gradle.api.internal.file.AbstractFileCollection.visitRootElements(AbstractFileCollection.java:234) at org.gradle.api.internal.file.CompositeFileCollection.visitRootElements(CompositeFileCollection.java:185) at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter.snapshot(AbstractFileCollectionSnapshotter.java:53) at org.gradle.api.internal.changedetection.state.DefaultCompileClasspathSnapshotter.snapshot(DefaultCompileClasspathSnapshotter.java:38) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.snapshotTaskFiles(CacheBackedTaskHistoryRepository.java:331) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.createExecution(CacheBackedTaskHistoryRepository.java:154) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.access$100(CacheBackedTaskHistoryRepository.java:61) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository$1.getCurrentExecution(CacheBackedTaskHistoryRepository.java:114) at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.getStates(DefaultTaskArtifactStateRepository.java:201) at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.isUpToDate(DefaultTaskArtifactStateRepository.java:86) at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:53) at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54) at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60) at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97) at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87) at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98) at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) Up-to-date check for task ':compileJava' took 4.089 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. :compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 18.955 secs. :processResources (Thread[Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Up-to-date check for task ':processResources' took 0.029 secs. It is not up-to-date because: No history is available. :processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.104 secs. :classes (Thread[Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. :debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/picard-tools-3.1.1+dfsg/build/debian/picard.pom :debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.112 secs. :jar (Thread[Task worker for ':' Thread 3,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.042 secs. It is not up-to-date because: No history is available. :jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.558 secs. :javadoc (Thread[Task worker for ':' Thread 3,5,main]) started. :javadoc Putting task artifact state for task ':javadoc' into context took 0.0 secs. Up-to-date check for task ':javadoc' took 0.089 secs. It is not up-to-date because: No history is available. Starting process 'command '/usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc''. Working directory: /build/reproducible-path/picard-tools-3.1.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc @/build/reproducible-path/picard-tools-3.1.1+dfsg/build/tmp/javadoc/javadoc.options Successfully started process 'command '/usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc'' /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:178: error: unmappable character (0xE2) for encoding US-ASCII "Output is generated in the form of a ???molten??? (one row per comparison) CrosscheckMetric " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:178: error: unmappable character (0x80) for encoding US-ASCII "Output is generated in the form of a ???molten??? (one row per comparison) CrosscheckMetric " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:178: error: unmappable character (0x9C) for encoding US-ASCII "Output is generated in the form of a ???molten??? (one row per comparison) CrosscheckMetric " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:178: error: unmappable character (0xE2) for encoding US-ASCII "Output is generated in the form of a ???molten??? (one row per comparison) CrosscheckMetric " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:178: error: unmappable character (0x80) for encoding US-ASCII "Output is generated in the form of a ???molten??? (one row per comparison) CrosscheckMetric " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:178: error: unmappable character (0x9D) for encoding US-ASCII "Output is generated in the form of a ???molten??? (one row per comparison) CrosscheckMetric " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:181: error: unmappable character (0xE2) for encoding US-ASCII "a severe Loss of Heterozygosity (LOH) with high purity???this could otherwise lead to a " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:181: error: unmappable character (0x80) for encoding US-ASCII "a severe Loss of Heterozygosity (LOH) with high purity???this could otherwise lead to a " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:181: error: unmappable character (0x94) for encoding US-ASCII "a severe Loss of Heterozygosity (LOH) with high purity???this could otherwise lead to a " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0xE2) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x80) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x98) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0xE2) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x80) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x99) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0xE2) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x80) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x98) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0xE2) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x80) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:204: error: unmappable character (0x99) for encoding US-ASCII "In some cases, the groups collected may not have any observations (???reads??? for BAM files, or ???calls??? for VCF files) " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:219: error: unmappable character (0xE2) for encoding US-ASCII "the tool will return a ???zero???. However, an error will be logged and the tool will return EXIT_CODE_WHEN_NO_VALID_CHECKS " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:219: error: unmappable character (0x80) for encoding US-ASCII "the tool will return a ???zero???. However, an error will be logged and the tool will return EXIT_CODE_WHEN_NO_VALID_CHECKS " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:219: error: unmappable character (0x98) for encoding US-ASCII "the tool will return a ???zero???. However, an error will be logged and the tool will return EXIT_CODE_WHEN_NO_VALID_CHECKS " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:219: error: unmappable character (0xE2) for encoding US-ASCII "the tool will return a ???zero???. However, an error will be logged and the tool will return EXIT_CODE_WHEN_NO_VALID_CHECKS " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:219: error: unmappable character (0x80) for encoding US-ASCII "the tool will return a ???zero???. However, an error will be logged and the tool will return EXIT_CODE_WHEN_NO_VALID_CHECKS " + ^ /build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java:219: error: unmappable character (0x99) for encoding US-ASCII "the tool will return a ???zero???. However, an error will be logged and the tool will return EXIT_CODE_WHEN_NO_VALID_CHECKS " + ^ 27 errors Problems generating Javadoc. Command line issued: [/usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc, @/build/reproducible-path/picard-tools-3.1.1+dfsg/build/tmp/javadoc/javadoc.options] Generated Javadoc options file has following contents: ------ -Xdoclint:none '-quiet' -classpath '/build/reproducible-path/picard-tools-3.1.1+dfsg/build/classes/java/main:/build/reproducible-path/picard-tools-3.1.1+dfsg/build/resources/main:/usr/share/maven-repo/com/intel/gkl/gkl/debian/gkl-debian.jar:/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/debian/gatk-native-bindings-debian.jar:/usr/share/maven-repo/com/google/guava/guava/debian/guava-debian.jar:/usr/share/maven-repo/org/apache/commons/commons-math3/debian/commons-math3-debian.jar:/usr/share/maven-repo/org/apache/commons/commons-collections4/debian/commons-collections4-debian.jar:/usr/share/maven-repo/com/github/samtools/htsjdk/debian/htsjdk-debian.jar:/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar:/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar:/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar:/usr/share/maven-repo/org/debian/gradle/gradle-dependency-placeholder/1.0/gradle-dependency-placeholder-1.0.jar:/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar:/usr/share/maven-repo/commons-io/commons-io/debian/commons-io-debian.jar:/usr/share/maven-repo/org/jsr-305/jsr305/0.x/jsr305-0.x.jar:/usr/share/maven-repo/com/google/errorprone/error_prone_annotations/debian/error_prone_annotations-debian.jar:/usr/share/maven-repo/org/apache/commons/commons-jexl/debian/commons-jexl-debian.jar:/usr/share/maven-repo/commons-logging/commons-logging/debian/commons-logging-debian.jar:/usr/share/maven-repo/org/xerial/snappy/snappy-java/debian/snappy-java-debian.jar:/usr/share/maven-repo/org/apache/commons/commons-compress/debian/commons-compress-debian.jar:/usr/share/maven-repo/org/tukaani/xz/debian/xz-debian.jar:/usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/debian/ngs-java-debian.jar:/usr/share/maven-repo/org/sharegov/mjson/debian/mjson-debian.jar:/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar:/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar:/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar' -d '/build/reproducible-path/picard-tools-3.1.1+dfsg/build/docs/javadoc' -doctitle 'picard 3.1.1 API' -link 'file:///usr/share/doc/default-jdk/api' -quiet -windowtitle 'picard 3.1.1 API' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/PicardException.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/Test.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/reference/ExtractSequences.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/reference/NormalizeFasta.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/reference/NonNFastaSize.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/DistanceMetric.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/CollectIlluminaBasecallingMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/ExtractIlluminaBarcodes.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/ExtractBarcodesProgram.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/BarcodeExtractor.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/CustomAdapterPair.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/BarcodeMetric.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/CollectIlluminaLaneMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/ClusterDataToSamConverter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/IlluminaBasecallsToFastq.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/quality/CollectHiSeqXPfFailMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/IlluminaBasecallsToSam.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/IlluminaPhasingMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/IlluminaLaneMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/ReadData.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/IlluminaData.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/ClusterData.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/BclParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/IlluminaDataProvider.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/FilterParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/PosParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/BclData.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/IlluminaDataProviderFactory.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/MultiTileLocsParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/CycleIlluminaFileMap.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/PerTilePerCycleFileUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/TileTemplateRead.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/PerTileCycleParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/illumina/parser/readers/BclIndexReader.java' 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'/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/IntervalList/IntervalListScattererWithoutSubdivision.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/LiftOverIntervalList.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/AbstractInputParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/IlluminaUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/AdapterMarker.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/ClippingUtility.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/DelimitedTextFileWithHeaderIterator.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/AccumulateQualityYieldMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/help/HelpConstants.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/PropertyUtils.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/AtomicIterator.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/GraphUtils.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/ReflectionUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/FifoBuffer.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/AsyncIterator.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/ThreadPoolExecutorWithExceptions.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/BasicInputParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/VariantType.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/MathUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/Iterators.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/RExecutor.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/ThreadPoolExecutorUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/IntervalListTools.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/DbSnpBitSetUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/CsvInputParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/TabbedTextFileWithHeaderParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/TabbedInputParser.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/UnsignedTypeUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/SingleBarcodeDistanceMetric.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/ScatterIntervalsByNs.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/CircularByteBuffer.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/LiftoverUtils.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/BaitDesigner.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/util/AlleleSubsettingUtils.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fastq/SamToBfqWriter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fastq/Casava18ReadNameEncoder.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fastq/BamToBfqWriter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fastq/IlluminaReadNameEncoder.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fastq/ReadNameEncoder.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CheckFingerprint.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeProbabilities.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromGenotypeLikelihoods.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/FingerprintResults.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/FingerprintChecker.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/LocusResult.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckFingerprints.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CalculateFingerprintMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/FingerprintMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromContaminatorSequence.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CappedHaplotypeProbabilities.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/IdentifyContaminant.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/FingerprintIdDetails.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromSequence.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckMetric.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeProbabilityOfNormalGivenTumor.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/ClusterCrosscheckMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/ExtractFingerprint.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeBlock.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/Fingerprint.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeMap.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/DiploidGenotype.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/FingerprintUtils.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeProbabilitiesUsingLogLikelihoods.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/LiftOverHaplotypeMap.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/ConvertHaplotypeDatabaseToVcf.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/ClusteredCrosscheckMetric.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/Snp.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/MatchResults.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/CrosscheckReadGroupFingerprints.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromGenotype.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/fingerprint/DiploidHaplotype.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/WgsMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/FingerprintingSummaryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectOxoGMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/AbstractWgsMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/RrbsSummaryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectRnaSeqMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/SinglePassSamProgram.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/RrbsMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectGcBiasMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/RrbsCpgDetailMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/QualityScoreDistribution.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/MeanQualityByCycle.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/ChimeraUtil.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectInsertSizeMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/AlignmentSummaryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/BaseDistributionByCycleMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/WgsMetricsProcessorImpl.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectMultipleMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CounterManager.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/GcBiasSummaryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/MetricAccumulationLevel.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/RnaSeqMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/GcBiasMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/replicates/IndependentReplicateMetric.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectRawWgsMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/TargetMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/InsertSizeMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/HsMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/CollectHsMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/RnaSeqMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/CollectTargetedMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/TargetMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/TargetMetricsBase.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/TargetedPcrMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/TargetedPcrMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/CollectTargetedPcrMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/HsMetricCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/directed/PanelMetricsBase.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectBaseDistributionByCycle.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/TheoreticalSensitivity.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectRrbsMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/MergeableMetricBase.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectWgsMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/FastWgsMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectQualityYieldMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CompareMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/RrbsMetricsCollector.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/FingerprintingDetailMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/GcBiasUtils.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/InsertSizeMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/artifacts/CollectSequencingArtifactMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/artifacts/SequencingArtifactMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/artifacts/ErrorSummaryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/artifacts/ContextAccumulator.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/artifacts/ConvertSequencingArtifactToOxoG.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/artifacts/Transition.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/artifacts/ArtifactCounter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/JumpingLibraryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/AdapterUtility.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/WgsMetricsProcessor.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/GcBiasDetailMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/HistogramGenerator.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/filter/CountingDuplicateFilter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/filter/CountingFilter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/filter/CountingAdapterFilter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/filter/CountingPairedFilter.java' '/build/reproducible-path/picard-tools-3.1.1+dfsg/src/main/java/picard/filter/CountingMapQFilter.java' ------ :javadoc FAILED :javadoc (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 3.063 secs. FAILURE: Build failed with an exception. * What went wrong: Execution failed for task ':javadoc'. > Javadoc generation failed. Generated Javadoc options file (useful for troubleshooting): '/build/reproducible-path/picard-tools-3.1.1+dfsg/build/tmp/javadoc/javadoc.options' * Try: Run with --debug option to get more log output. Run with --scan to get full insights. * Exception is: org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':javadoc'. at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:100) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:70) at org.gradle.api.internal.tasks.execution.OutputDirectoryCreatingTaskExecuter.execute(OutputDirectoryCreatingTaskExecuter.java:51) at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:62) at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54) at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60) at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97) at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87) at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98) at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) Caused by: org.gradle.api.GradleException: Javadoc generation failed. Generated Javadoc options file (useful for troubleshooting): '/build/reproducible-path/picard-tools-3.1.1+dfsg/build/tmp/javadoc/javadoc.options' at org.gradle.api.tasks.javadoc.internal.JavadocGenerator.execute(JavadocGenerator.java:58) at org.gradle.api.tasks.javadoc.internal.JavadocGenerator.execute(JavadocGenerator.java:31) at org.gradle.api.tasks.javadoc.Javadoc.executeExternalJavadoc(Javadoc.java:156) at org.gradle.api.tasks.javadoc.Javadoc.generate(Javadoc.java:144) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) at org.gradle.api.internal.project.taskfactory.StandardTaskAction.doExecute(StandardTaskAction.java:46) at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:39) at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:26) at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:780) at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:747) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$1.run(ExecuteActionsTaskExecuter.java:121) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:110) at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:92) ... 29 more Caused by: org.gradle.process.internal.ExecException: Process 'command '/usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc'' finished with non-zero exit value 1 at org.gradle.process.internal.DefaultExecHandle$ExecResultImpl.assertNormalExitValue(DefaultExecHandle.java:382) at org.gradle.process.internal.DefaultExecAction.execute(DefaultExecAction.java:31) at org.gradle.api.tasks.javadoc.internal.JavadocGenerator.execute(JavadocGenerator.java:53) ... 48 more * Get more help at https://help.gradle.org BUILD FAILED in 34s 5 actionable tasks: 5 executed dh_auto_build: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar javadoc returned exit code 1 make[1]: *** [debian/rules:15: override_dh_auto_build] Error 25 make[1]: Leaving directory '/build/reproducible-path/picard-tools-3.1.1+dfsg' make: *** [debian/rules:7: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2008047 and its subdirectories Tue May 7 11:05:52 UTC 2024 W: No second build log, what happened?