Sat Apr 27 18:12:57 UTC 2024 I: starting to build r-bioc-ioniser/unstable/amd64 on jenkins on '2024-04-27 18:12' Sat Apr 27 18:12:57 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/4848/console.log Sat Apr 27 18:12:57 UTC 2024 I: Downloading source for unstable/r-bioc-ioniser=2.26.0+dfsg-1 --2024-04-27 18:12:57-- http://deb.debian.org/debian/pool/main/r/r-bioc-ioniser/r-bioc-ioniser_2.26.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2362 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-ioniser_2.26.0+dfsg-1.dsc’ 0K .. 100% 381M=0s 2024-04-27 18:12:57 (381 MB/s) - ‘r-bioc-ioniser_2.26.0+dfsg-1.dsc’ saved [2362/2362] Sat Apr 27 18:12:57 UTC 2024 I: r-bioc-ioniser_2.26.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-ioniser Binary: r-bioc-ioniser Architecture: all Version: 2.26.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/IONiseR/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-ioniser Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-ioniser.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle Package-List: r-bioc-ioniser deb gnu-r optional arch=all Checksums-Sha1: dc923d62f76b5d813661e0aea50c0aeaf20f9d2e 1086708 r-bioc-ioniser_2.26.0+dfsg.orig.tar.xz 2dfa0b8f9f034e79bb100b89386342965a87e2c0 3300 r-bioc-ioniser_2.26.0+dfsg-1.debian.tar.xz Checksums-Sha256: 359cc6fc1829bdbe7d275f3be47c6b0a09c94d23b8e09cf48e5b572d599413d7 1086708 r-bioc-ioniser_2.26.0+dfsg.orig.tar.xz 0af5bba32d8c2258b333ba7ffa7b6e67d28325a8d222e42a4705309944f72540 3300 r-bioc-ioniser_2.26.0+dfsg-1.debian.tar.xz Files: 29bf6e9928ae971b0a54b2f1d6727824 1086708 r-bioc-ioniser_2.26.0+dfsg.orig.tar.xz 5406f780342abfd185fd15f1fca8adbc 3300 r-bioc-ioniser_2.26.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVpmZ0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHWUQ/9EcwPLzntJHiCuaPypxGT3kroqcUlBY6s gEmWtxCviwck3omT4CXNB/P73iVWnq6CT42XrvnFeTJM+mJT6Usx36xFXPV2SLVc CckxtK9CNyi/DE0djH7BqC8oRvLJtB9jreyEosQ5G1Fp1+1AY+oeyYTJHEcPVJDC RC2Ji3qNngz+Z9iWtDCFoPUVUsAUWv1wHwrOoFe78dqVmIGhDp1SPRM+RAzrcxXr hvXgoApoxNAfLBrLY/izzSxxINRdqiee9tJa90T7gsapFKry9K2oPCOICOm48eFy t1zU6Zx2Gd1TOXTy9H2lKkG2A7Uc2v0Ty41VubjK6977wfMud9DG9tyftE+zYNlW J66VIipxtnUpSIFTHlzreHPbxU1o8L+BpoI70yhwwlY8YbyCLa/89CC877Z//smy wQhxagkaTE1cByuGj2il9hdS9ZMJabjjccarLsAI8mVJ0O8EQcIa88xkq6kzO474 1JCveg4fS5NgeQfhzc7KUkHn3o2egfevFkzgCozzN/HbTi2sVovQCJHStFp61jn9 O31VBJC51RH+UyKxxrBUN8/22DekVwSSVY8JvNm9syKzLRmybVlcFjo17vrnehYa xWM5JVtykeRUol+FSG4zYYKfo82DD61K3uv7f/DQafXqqTP66DqIHCca52xgOoqP CWeve2Q5rc0= =czXr -----END PGP SIGNATURE----- Sat Apr 27 18:12:57 UTC 2024 I: Checking whether the package is not for us Sat Apr 27 18:12:57 UTC 2024 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat Apr 27 18:12:57 UTC 2024 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat Apr 27 18:15:55 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 30 12:35:57 -12 2025 I: pbuilder-time-stamp: 1748651757 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-ioniser_2.26.0+dfsg-1.dsc] I: copying [./r-bioc-ioniser_2.26.0+dfsg.orig.tar.xz] I: copying [./r-bioc-ioniser_2.26.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 1 08:30:21 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-ioniser_2.26.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-ioniser in r-bioc-ioniser-2.26.0+dfsg dpkg-source: info: unpacking r-bioc-ioniser_2.26.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-ioniser_2.26.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying IONiseR.Rmd-fix.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3371118/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d13a2ce23a17452d8490fee9d06bb24b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3371118' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eAY7cAcj/pbuilderrc_JYj6 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eAY7cAcj/b1 --logfile b1/build.log r-bioc-ioniser_2.26.0+dfsg-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 30 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3371118/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-cran-knitr, r-cran-markdown, r-bioc-biocstyle dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however: Package r-cran-magrittr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tidyr; however: Package r-cran-tidyr is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-shortread; however: Package r-bioc-shortread is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tibble; however: Package r-cran-tibble is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bit64; however: Package r-cran-bit64 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringr; however: Package r-cran-stringr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-markdown; however: Package r-cran-markdown is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocstyle; however: Package r-bioc-biocstyle is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lmodern{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libbibtex-parser-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libio-string-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-lunr{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblatex-tounicode-perl{a} libldap-2.5-0{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpotrace0{a} libpsl5t64{a} libptexenc1{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libsynctex2{a} libsz2{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxi6{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libzzip-0-13t64{a} littler{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-biocstyle{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-shortread{a} r-bioc-sparsearray{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-biocmanager{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-bookdown{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-deldir{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-hwriter{a} r-cran-interp{a} r-cran-isoband{a} r-cran-jpeg{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-promises{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-rcurl{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-bibtex-extra{a} texlive-binaries{a} texlive-latex-base{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts dvisvgm git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lmodern lynx node-highlight.js node-jquery publicsuffix r-bioc-biocversion r-cran-bench r-cran-brio r-cran-broom r-cran-cairo r-cran-callr r-cran-covr r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-dichromat r-cran-downlit r-cran-dygraphs r-cran-formattable r-cran-future r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmlwidgets r-cran-httr r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-miniui r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-spelling r-cran-survival r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tufte r-cran-unitizer r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 369 newly installed, 0 to remove and 0 not upgraded. Need to get 398 MB of archives. After unpacking 1260 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-3 [255 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-7 [93.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-13 [230 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-1 [114 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-1 [105 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.0-2 [28.2 MB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libgfortran-13-dev amd64 13.2.0-23 [847 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-23 [10.7 MB] Get: 111 http://deb.debian.org/debian unstable/main amd64 gfortran-13 amd64 13.2.0-23 [11.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7 [1280 B] Get: 113 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:13.2.0-7 [1440 B] Get: 114 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.4+20240414-1 [104 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.4+20240414-1 [349 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-4 [152 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.42-4+b1 [234 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.42-4+b1 [55.8 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.42-4+b1 [755 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.43-5 [360 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b2 [21.9 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [189 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.20-1 [54.5 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.0-2 [4512 B] Get: 139 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-2+b2 [15.1 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b3 [14.1 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 163 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 164 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 168 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 173 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b3 [20.2 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b1 [766 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1 [44.7 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.7.1-3 [432 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-10+b2 [58.1 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 dh-r all 20231212 [42.2 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.10.10+repack-3.3 [23.4 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 javascript-common all 11+nmu1 [6260 B] Get: 191 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 193 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 liblatex-tounicode-perl all 0.54-2 [29.1 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libbibtex-parser-perl all 1.04+dfsg-1 [17.6 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libsnappy1v5 amd64 1.1.10-1+b1 [27.6 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libblosc1 amd64 1.21.5+ds-1+b1 [49.6 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-2.1+b1 [10.6 MB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 201 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.7.1-3 [547 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.3 [89.3 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 220 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libjs-lunr all 2.3.9~dfsg-2 [76.6 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libjs-modernizr all 2.6.2+ds1-5 [47.1 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2023.20230311.66589-9+b2 [154 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2023.20230311.66589-9+b2 [47.2 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2023.20230311.66589-9+b2 [62.2 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9+b2 [113 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2+b1 [56.2 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 littler all 0.3.20-1 [16.0 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.3-1 [445 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.3+ds-3 [24.3 MB] Get: 249 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 r-bioc-biobase amd64 2.62.0-1 [2119 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get: 258 http://deb.debian.org/debian unstable/main amd64 r-cran-cpp11 all 0.4.7-1 [219 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocparallel amd64 1.36.0-1 [1337 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 r-cran-digest amd64 0.6.35-1 [203 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.3-1 [1669 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 r-cran-fastmap amd64 1.1.1-1 [68.9 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 r-cran-htmltools amd64 0.5.7-1 [374 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 r-cran-evaluate all 0.23-1 [90.6 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 r-cran-xfun amd64 0.43+dfsg-1 [471 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 r-cran-highr all 0.10+dfsg-2 [38.3 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.8-2 [107 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 r-cran-knitr all 1.46+dfsg-1 [907 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 r-cran-cachem amd64 1.0.8-1 [72.0 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [443 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.2-1 [1325 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 r-cran-fs amd64 1.6.3+dfsg-1+b1 [228 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 r-cran-sass amd64 0.4.8+dfsg-1 [959 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 r-cran-bslib all 0.6.1+dfsg-1 [5006 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 r-cran-stringi amd64 1.8.3-1 [861 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 r-cran-tinytex all 0.49-1 [142 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgkitten all 0.2.3-1 [26.7 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 r-cran-rcpp amd64 1.0.12-1 [2071 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 r-cran-promises amd64 1.2.1+dfsg-1 [281 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 r-cran-commonmark amd64 1.9.1-1 [119 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 r-cran-shiny all 1.8.0+dfsg-1 [2764 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1454 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 r-cran-bookdown all 0.37+dfsg-1 [1402 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [126 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2023.20230311.66589-9+b2 [8495 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2023.20240207-1 [22.0 MB] Get: 308 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] Get: 310 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [452 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2062 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 r-bioc-iranges amd64 2.36.0-1 [2258 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B] Get: 314 http://deb.debian.org/debian unstable/main amd64 r-bioc-xvector amd64 0.42.0-1 [622 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1+b1 [787 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] Get: 318 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3848 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 r-bioc-biostrings amd64 2.70.3+dfsg-1 [13.7 MB] Get: 320 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.6-5-1 [3789 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 r-cran-matrixstats amd64 1.2.0-1 [484 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 r-cran-abind all 1.4-5-2 [64.6 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [504 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1196 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1794 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1827 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-3 [1285 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1+b1 [3584 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2144 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1+b1 [103 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [139 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1+b1 [843 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 r-cran-hwriter all 1.3.2.1-1 [110 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 r-cran-jpeg amd64 0.1-10-1 [30.8 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 r-cran-deldir amd64 2.0-4-1 [286 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 r-cran-rcppeigen amd64 0.3.4.0.0-1 [1407 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 r-cran-interp amd64 1.1-6-1 [1445 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 r-cran-mass amd64 7.3-60.0.1-1 [1118 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 r-cran-latticeextra all 0.6-30-1 [2194 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 r-bioc-shortread amd64 1.60.0-2 [5190 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1692 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [219 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 r-cran-dplyr amd64 1.1.4-1 [1524 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 r-cran-farver amd64 2.1.1-2 [1405 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 r-cran-gtable all 0.3.4+dfsg-1 [221 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 r-cran-nlme amd64 3.1.164-1 [2280 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3405 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 r-cran-markdown all 1.12+dfsg-2 [179 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Fetched 398 MB in 5s (78.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19697 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Preparing to unpack .../015-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3+b1_amd64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... 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Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../028-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../030-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../031-libxml2_2.9.14+dfsg-1.3+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package zip. Preparing to unpack .../036-zip_3.0-13_amd64.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../037-unzip_6.0-28_amd64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../038-libpaper1_1.1.29_amd64.deb ... Unpacking libpaper1:amd64 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../039-libpaper-utils_1.1.29_amd64.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../040-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../041-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../042-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../043-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../044-libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../045-libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../046-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.15.0-1.1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../049-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../050-libpixman-1-0_0.42.2-1+b1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../051-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../052-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../053-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../054-libxcb1_1.17.0-1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../055-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../056-libx11-6_2%3a1.8.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../057-libxcb-render0_1.17.0-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../058-libxcb-shm0_1.17.0-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../059-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../060-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../061-libcairo2_1.18.0-3+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.0-3+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../062-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../063-libcom-err2_1.47.0-2.4_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.0-2.4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../064-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../065-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../066-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../067-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../068-libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../069-libsasl2-2_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../070-libldap-2.5-0_2.5.17+dfsg-1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../071-libnghttp2-14_1.61.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../072-libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../073-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../074-libssh2-1t64_1.11.0-4.1+b2_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../075-libcurl4t64_8.7.1-3_amd64.deb ... Unpacking libcurl4t64:amd64 (8.7.1-3) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../076-libdeflate0_1.20-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.20-1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../077-libglib2.0-0t64_2.78.4-7_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.78.4-7) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../078-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../079-libgfortran5_14-20240330-1_amd64.deb ... Unpacking libgfortran5:amd64 (14-20240330-1) ... Selecting previously unselected package liblapack3:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../092-libtcl8.6_8.6.14+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../093-libjbig0_2.1-6.1+b1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../100-libxft2_2.3.6-1+b1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../101-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../102-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../103-libtk8.6_8.6.14-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.14-1) ... Selecting previously unselected package libice6:amd64. 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Setting up r-cran-viridislite (0.4.2-2) ... Setting up texlive-binaries (2023.20230311.66589-9+b2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b3) ... Setting up r-cran-commonmark (1.9.1-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.3-1) ... Setting up r-cran-jpeg (0.1-10-1) ... Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-fs (1.6.3+dfsg-1+b1) ... Setting up r-cran-rcpp (1.0.12-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.48.1-2) ... Setting up r-cran-rlang (1.1.3-1) ... Setting up r-cran-matrixstats (1.2.0-1) ... Setting up r-base-dev (4.4.0-2) ... Setting up littler (0.3.20-1) ... Setting up r-bioc-matrixgenerics (1.14.0-1) ... 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Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.4+dfsg-1) ... Setting up r-cran-later (1.3.2+dfsg-1) ... Setting up r-cran-matrix (1.6-5-1) ... Setting up r-cran-tinytex (0.49-1) ... Setting up r-cran-knitr (1.46+dfsg-1) ... Setting up r-cran-mgcv (1.9-1-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-bioc-iranges (2.36.0-1) ... Setting up r-cran-rcurl (1.98-1.14+dfsg-1+b1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-rcppeigen (0.3.4.0.0-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-bioc-biocparallel (1.36.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... 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Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-ioniser-2.26.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-ioniser_2.26.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-ioniser dpkg-buildpackage: info: source version 2.26.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/r-bioc-ioniser-2.26.0+dfsg' cd inst/doc && Rscript -e "require(knitr); require(markdown); knit('IONiseR.Rmd', 'IONiseR.md'); markdownToHTML('IONiseR.md', 'IONiseR.html', options=c('use_xhtml', 'base64_images'));" && rm -f IONiseR.md Loading required package: knitr Loading required package: markdown processing file: IONiseR.Rmd 1/37 2/37 [style] 3/37 4/37 [loadLibs] 5/37 6/37 [readData] 7/37 8/37 [loadData] 9/37 10/37 [exampleData] 11/37 12/37 [extractData1] 13/37 14/37 [extractData2] 15/37 16/37 [summaryPlots1] 17/37 18/37 [readCategories] 19/37 20/37 [summaryPlots2] 21/37 22/37 [numReads] 23/37 24/37 [heatmapExample] 25/37 26/37 [channelActivity] 27/37 28/37 [pentamerCorrelation] 29/37 30/37 [combinedplots] 31/37 32/37 [writefastq] 33/37 34/37 [writefastq2] 35/37 36/37 [fast5toFastq] 37/37 output file: IONiseR.md [1] "IONiseR.md" make[1]: Leaving directory '/build/reproducible-path/r-bioc-ioniser-2.26.0+dfsg' dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-ioniser/ -O--buildsystem=R I: R Package: IONiseR Version: 2.26.0 I: Building using R version 4.4.0-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 01 Dec 2023 09:22:14 +0100 mkdir -p /build/reproducible-path/r-bioc-ioniser-2.26.0\+dfsg/debian/r-bioc-ioniser/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-ioniser-2.26.0\+dfsg/debian/r-bioc-ioniser/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 01 Dec 2023 09:22:14 +0100'" * installing *source* package 'IONiseR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IONiseR) rm -f /build/reproducible-path/r-bioc-ioniser-2.26.0\+dfsg/debian/r-bioc-ioniser/usr/lib/R/site-library/IONiseR/LICENSE W: Ignoring specified R dependency: R (>= 3.4) I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-gridextra for Suggests:gridExtra I: Using r-cran-testthat for Suggests:testthat W: Cannot find a debian package for Suggests:minionSummaryData I: Using r-bioc-rhdf5 for Imports:rhdf5 I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-magrittr for Imports:magrittr I: Using r-cran-tidyr for Imports:tidyr I: Using r-bioc-shortread for Imports:ShortRead I: Using r-bioc-biostrings for Imports:Biostrings I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-xvector for Imports:XVector I: Using r-cran-tibble for Imports:tibble I: Using r-bioc-biocparallel for Imports:BiocParallel I: Using r-cran-bit64 for Imports:bit64 I: Using r-cran-stringr for Imports:stringr I: BioConductor API version: r-api-bioc-3.18 I: Use r-bioc-ioniser as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-ioniser-2.26.0+dfsg' dh_fixperms find debian -name '*.fast5' | xargs chmod -x make[1]: Leaving directory '/build/reproducible-path/r-bioc-ioniser-2.26.0+dfsg' dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-ioniser' in '../r-bioc-ioniser_2.26.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-ioniser_2.26.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3371118 and its subdirectories I: Current time: Fri May 30 12:38:52 -12 2025 I: pbuilder-time-stamp: 1748651932 Sat Apr 27 18:15:55 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat Apr 27 18:15:55 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat Apr 27 18:32:59 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat Apr 27 18:33:00 UTC 2024 I: r-bioc-ioniser_2.26.0+dfsg-1_amd64.changes: Format: 1.8 Date: Fri, 01 Dec 2023 09:22:14 +0100 Source: r-bioc-ioniser Binary: r-bioc-ioniser Architecture: all Version: 2.26.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-ioniser - Quality Assessment Tools for Oxford Nanopore MinION data Changes: r-bioc-ioniser (2.26.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: 0f4680efcde3efb629215479abae5499fd129026 1142296 r-bioc-ioniser_2.26.0+dfsg-1_all.deb 937600a3a1e86315c8b42303885e5d63b65a79e7 16116 r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo Checksums-Sha256: af69788b2934da85c95a2a67c79e0cf798732ee57c76be427aa36b0cf4b0c3a2 1142296 r-bioc-ioniser_2.26.0+dfsg-1_all.deb e67fdb50d34cd92e70bda2d9052f07c2deb821fa1a2de5a4b787d9a3468577bc 16116 r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo Files: 41c7d1d2bd6bad889bf51766e75004f5 1142296 gnu-r optional r-bioc-ioniser_2.26.0+dfsg-1_all.deb 44d550cb3582e757a712615ad4e09abe 16116 gnu-r optional r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo Sat Apr 27 18:33:01 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_14-4848.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eAY7cAcj/r-bioc-ioniser_2.26.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eAY7cAcj/r-bioc-ioniser_2.26.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eAY7cAcj/r-bioc-ioniser_2.26.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eAY7cAcj/b1/r-bioc-ioniser_2.26.0+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eAY7cAcj/b2/r-bioc-ioniser_2.26.0+dfsg-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.330s) 0.203s 6 calls xz 0.100s 7 calls diff 0.021s 11 calls html2text 0.003s 1 call cmp 0.003s 1 call cmp (external) 0.001s 7 calls cmp (internal) ## compare_files (cumulative) (total time: 1.724s) 0.494s 1 call abc.DotChangesFile 0.479s 1 call abc.DebFile 0.440s 2 calls abc.XzFile 0.198s 1 call abc.DebDataTarFile 0.079s 1 call abc.HtmlFile 0.028s 1 call abc.TarFile 0.006s 1 call abc.Md5sumsFile ## container_extract (total time: 0.252s) 0.204s 6 calls diffoscope.comparators.xz.XzContainer 0.034s 60 calls diffoscope.comparators.deb.DebTarContainer 0.011s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.006s) 0.006s 6 calls linediff ## has_same_content_as (total time: 0.004s) 0.003s 1 call abc.DebDataTarFile 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.DebFile 0.000s 1 call abc.HtmlFile ## main (total time: 0.923s) 0.916s 2 calls outputs 0.007s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer ## output (total time: 0.051s) 0.050s 1 call html 0.001s 1 call text 0.000s 1 call json ## recognizes (total time: 0.088s) 0.041s 544 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile 0.015s 260 calls diffoscope.comparators.utils.archive.ArchiveMember 0.006s 54 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.052s) 0.052s 11 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 1.285s CPU time consumed: 1.323s Sat Apr 27 18:33:03 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Apr 27 18:33:03 UTC 2024 E: r-bioc-ioniser failed to build reproducibly in unstable on amd64. Sat Apr 27 18:33:04 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Apr 27 18:33:04 UTC 2024 I: Submitting 20K b1/r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo.asc Sat Apr 27 18:33:08 UTC 2024 I: Submitting 20K b2/r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo.asc Sat Apr 27 18:33:11 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 27 18:33:11 UTC 2024 I: Done submitting .buildinfo files. Sat Apr 27 18:33:11 UTC 2024 I: Removing signed r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo.asc files: removed './b1/r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo.asc' removed './b2/r-bioc-ioniser_2.26.0+dfsg-1_amd64.buildinfo.asc'