Sat Apr 27 14:25:19 UTC 2024 I: starting to build r-bioc-qtlizer/unstable/amd64 on jenkins on '2024-04-27 14:25' Sat Apr 27 14:25:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_16/18135/console.log Sat Apr 27 14:25:19 UTC 2024 I: Downloading source for unstable/r-bioc-qtlizer=1.16.0+dfsg-1 --2024-04-27 14:25:20-- http://deb.debian.org/debian/pool/main/r/r-bioc-qtlizer/r-bioc-qtlizer_1.16.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2184 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-qtlizer_1.16.0+dfsg-1.dsc’ 0K .. 100% 175M=0s 2024-04-27 14:25:20 (175 MB/s) - ‘r-bioc-qtlizer_1.16.0+dfsg-1.dsc’ saved [2184/2184] Sat Apr 27 14:25:20 UTC 2024 I: r-bioc-qtlizer_1.16.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-qtlizer Binary: r-bioc-qtlizer Architecture: all Version: 1.16.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Nilesh Patra Homepage: https://bioconductor.org/packages/Qtlizer/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-qtlizer Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-qtlizer.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr, r-cran-curl, r-bioc-genomicranges, r-cran-stringi, r-cran-knitr, r-cran-markdown Package-List: r-bioc-qtlizer deb gnu-r optional arch=all Checksums-Sha1: 7af11513820e9d0e92830b31f6742aa8a8eac6c0 7208 r-bioc-qtlizer_1.16.0+dfsg.orig.tar.xz aedd87e13eaeeb46a9349fa6f546099f42733e8d 2700 r-bioc-qtlizer_1.16.0+dfsg-1.debian.tar.xz Checksums-Sha256: ebbe9b3b27fbb611cbd8c8c04f79d81b2fec0cade4185c22d928df608cadad2a 7208 r-bioc-qtlizer_1.16.0+dfsg.orig.tar.xz 0855878f1da0d6bf3f1b0d1d45d4e5e83bbb702834f9ef21ff6e3367013c0f7c 2700 r-bioc-qtlizer_1.16.0+dfsg-1.debian.tar.xz Files: 3b4b57ddc085df186f45647eeb323992 7208 r-bioc-qtlizer_1.16.0+dfsg.orig.tar.xz 2fab981781cde84f32c24a970ae5d0f7 2700 r-bioc-qtlizer_1.16.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVoZQURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGrPg/9EPnNCZ8V7Hzfv3hUdBhM4diV8n+LKILF x89UcQXt8rUvgwzf3cN4jQMmuFxf0E61XZNJk6Md/BBns/ZqTDPntjIrkDQcGNAr fpRiufqAolYgV0vovppCjil1OL1doq+oV9WvGj5w6PglWww2WuMEas6XP0IO4qdf FcqvYSqxhM2zkk5Lo5K/ChLiIjcJWvsh6YRS3w1M4a1i0NNj098bdh4nJjmWdq9W QNVwFxRMtGQaMwvBdK0uodrvueX+gfDzZddfu+iZrhROu2SaIzfodHyfeQ59pwCv pD49fxNt1EHEu35vddnaTxsre5/pjTHIVlmhExYmrHQQLLRoig9ot7uiiy8vUzUy kNn6SCBu4Rl0Kc9Rhf5lI7jhMSyLkJjNVLedY0jBFgPwjuU8QHw/UeFW/pITN1wl xpNw6TfA1q8atMjQswIwzjJmlMveUUwhpGEwGT/ICcQRYTLIcEDjm240QqgcPtjE bOfUZHK/3g5Poh9H1dj47KwZdKuzDj1Y9g3F51a16UVGNAasPQK2/GG5UFMtmw4/ vFjiUu5i1TieJAlTN3kj4URrg+l1BTad1x/iQ2sUrFYu+yZXpucSxors8gViIY3M TW5GHv3eAV7Q1ejrWXz6XmzGVrpXB8bQpZ93GtkIKhU0UIeiOTvV5HRuRjGob9uK 33FgdUSDcpQ= =YXDL -----END PGP SIGNATURE----- Sat Apr 27 14:25:20 UTC 2024 I: Checking whether the package is not for us Sat Apr 27 14:25:20 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Apr 27 14:25:20 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Apr 27 14:26:16 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 30 08:48:22 -12 2025 I: pbuilder-time-stamp: 1748638102 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-qtlizer_1.16.0+dfsg-1.dsc] I: copying [./r-bioc-qtlizer_1.16.0+dfsg.orig.tar.xz] I: copying [./r-bioc-qtlizer_1.16.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 30 10:33:41 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-qtlizer_1.16.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-qtlizer in r-bioc-qtlizer-1.16.0+dfsg dpkg-source: info: unpacking r-bioc-qtlizer_1.16.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-qtlizer_1.16.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/926976/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0f45c53408b54017b149ad92f251207f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='926976' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NhYZub1J/pbuilderrc_JlX9 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NhYZub1J/b1 --logfile b1/build.log r-bioc-qtlizer_1.16.0+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 29 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/926976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr, r-cran-curl, r-bioc-genomicranges, r-cran-stringi, r-cran-knitr, r-cran-markdown dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19694 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-httr; however: Package r-cran-httr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-curl; however: Package r-cran-curl is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringi; however: Package r-cran-stringi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-markdown; however: Package r-cran-markdown is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-s4vectors{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-bitops{a} r-cran-commonmark{a} r-cran-curl{a} r-cran-evaluate{a} r-cran-highr{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-markdown{a} r-cran-mime{a} r-cran-openssl{a} r-cran-r6{a} r-cran-rcurl{a} r-cran-stringi{a} r-cran-sys{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-bslib r-cran-codetools r-cran-covr r-cran-dbi r-cran-digest r-cran-formatr r-cran-ggplot2 r-cran-gridsvg r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-jpeg r-cran-later r-cran-lattice r-cran-magick r-cran-magrittr r-cran-png r-cran-r.rsp r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rlang r-cran-rmarkdown r-cran-rstudioapi r-cran-runit r-cran-sass r-cran-sf r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-tibble r-cran-tikzdevice r-cran-tinytex r-cran-vctrs r-cran-webshot r-cran-webutils r-cran-withr r-cran-xml r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 218 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After unpacking 409 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-3 [255 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-7 [93.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-13 [230 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-1 [114 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-1 [105 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.0-2 [28.2 MB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libgfortran-13-dev amd64 13.2.0-23 [847 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-23 [10.7 MB] Get: 111 http://deb.debian.org/debian unstable/main amd64 gfortran-13 amd64 13.2.0-23 [11.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7 [1280 B] Get: 113 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:13.2.0-7 [1440 B] Get: 114 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.4+20240414-1 [104 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.4+20240414-1 [349 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-4 [152 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.42-4+b1 [234 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.42-4+b1 [55.8 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.42-4+b1 [755 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.43-5 [360 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b2 [21.9 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [189 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.20-1 [54.5 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.0-2 [4512 B] Get: 139 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-2+b2 [15.1 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b3 [14.1 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 163 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 164 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 168 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 173 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b3 [20.2 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b1 [766 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1 [44.7 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.7.1-3 [432 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-10+b2 [58.1 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 dh-r all 20231212 [42.2 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2062 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 r-bioc-iranges amd64 2.36.0-1 [2258 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1+b1 [787 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] Get: 199 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3848 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B] Get: 201 http://deb.debian.org/debian unstable/main amd64 r-bioc-xvector amd64 0.42.0-1 [622 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1827 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 r-cran-sys amd64 3.4.2-1 [43.7 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 r-cran-askpass amd64 1.2.0-1 [24.0 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 r-cran-commonmark amd64 1.9.1-1 [119 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 r-cran-curl amd64 5.2.0+dfsg-1+b1 [176 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 r-cran-evaluate all 0.23-1 [90.6 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 r-cran-xfun amd64 0.43+dfsg-1 [471 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 r-cran-highr all 0.10+dfsg-2 [38.3 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [443 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 r-cran-openssl amd64 2.1.1+dfsg-2+b1 [397 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.8-2 [107 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 r-cran-knitr all 1.46+dfsg-1 [907 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 r-cran-markdown all 1.12+dfsg-2 [179 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 r-cran-stringi amd64 1.8.3-1 [861 kB] Fetched 141 MB in 6s (24.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19694 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../092-libtcl8.6_8.6.14+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../093-libjbig0_2.1-6.1+b1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../100-libxft2_2.3.6-1+b1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../101-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../102-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../103-libtk8.6_8.6.14-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.14-1) ... Selecting previously unselected package libice6:amd64. 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Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b3) ... Setting up r-cran-commonmark (1.9.1-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... Setting up r-cran-curl (5.2.0+dfsg-1+b1) ... Setting up r-bioc-biocgenerics (0.48.1-2) ... Setting up r-base-dev (4.4.0-2) ... Setting up r-cran-xfun (0.43+dfsg-1) ... Setting up r-cran-sys (3.4.2-1) ... Setting up r-cran-mime (0.12-2) ... Setting up libmoose-perl:amd64 (2.2207-1+b1) ... Setting up r-cran-yaml (2.3.8-2) ... Setting up r-cran-evaluate (0.23-1) ... Setting up r-cran-highr (0.10+dfsg-2) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... Setting up r-cran-askpass (1.2.0-1) ... Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... Setting up r-cran-stringi (1.8.3-1) ... Setting up r-cran-markdown (1.12+dfsg-2) ... Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-knitr (1.46+dfsg-1) ... Setting up r-bioc-iranges (2.36.0-1) ... Setting up r-cran-rcurl (1.98-1.14+dfsg-1+b1) ... Setting up r-cran-openssl (2.1.1+dfsg-2+b1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-bioc-xvector (0.42.0-1) ... Setting up dh-r (20231212) ... Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-qtlizer-1.16.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-qtlizer_1.16.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-qtlizer dpkg-buildpackage: info: source version 1.16.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/r-bioc-qtlizer-1.16.0+dfsg' cd inst/doc && Rscript -e "require(knitr); require(markdown); knit('Qtlizer.Rmd', 'Qtlizer.md'); markdownToHTML('Qtlizer.md', 'Qtlizer.html', options=c('use_xhtml', 'base64_images'));" Loading required package: knitr Loading required package: markdown processing file: Qtlizer.Rmd 1/21 2/21 [unnamed-chunk-1] 3/21 4/21 [setup] 5/21 6/21 [unnamed-chunk-2] 7/21 8/21 [unnamed-chunk-3] 9/21 10/21 [unnamed-chunk-4] 11/21 12/21 [unnamed-chunk-5] 13/21 14/21 [unnamed-chunk-6] 15/21 16/21 [unnamed-chunk-7] 17/21 18/21 [unnamed-chunk-8] 19/21 20/21 [unnamed-chunk-9] 21/21 output file: Qtlizer.md [1] "Qtlizer.md" make[1]: Leaving directory '/build/reproducible-path/r-bioc-qtlizer-1.16.0+dfsg' dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-qtlizer/ -O--buildsystem=R I: R Package: Qtlizer Version: 1.16.0 I: Building using R version 4.4.0-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 30 Nov 2023 11:30:24 +0100 mkdir -p /build/reproducible-path/r-bioc-qtlizer-1.16.0\+dfsg/debian/r-bioc-qtlizer/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-qtlizer-1.16.0\+dfsg/debian/r-bioc-qtlizer/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 30 Nov 2023 11:30:24 +0100'" * installing *source* package 'Qtlizer' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Qtlizer) W: Ignoring specified R dependency: R (>= 3.6.0) I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-httr for Imports:httr I: Using r-cran-curl for Imports:curl I: Using r-bioc-genomicranges for Imports:GenomicRanges I: Using r-cran-stringi for Imports:stringi I: BioConductor API version: r-api-bioc-3.18 I: Use r-bioc-qtlizer as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-qtlizer' in '../r-bioc-qtlizer_1.16.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-qtlizer_1.16.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/926976 and its subdirectories I: Current time: Fri May 30 08:49:15 -12 2025 I: pbuilder-time-stamp: 1748638155 Sat Apr 27 14:26:17 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat Apr 27 14:26:17 UTC 2024 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat Apr 27 14:31:59 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat Apr 27 14:31:59 UTC 2024 I: r-bioc-qtlizer_1.16.0+dfsg-1_amd64.changes: Format: 1.8 Date: Thu, 30 Nov 2023 11:30:24 +0100 Source: r-bioc-qtlizer Binary: r-bioc-qtlizer Architecture: all Version: 1.16.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-qtlizer - Comprehensive QTL annotation of GWAS results Changes: r-bioc-qtlizer (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 18fdfeaf325db2d39e17286f4bb2657707e5a44f 27172 r-bioc-qtlizer_1.16.0+dfsg-1_all.deb 5c2de4cbb66ec2416745a7e114c1e782cd2c953c 11122 r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo Checksums-Sha256: 267fa718388f5b818379d02793130e00af3c513a8855fbac3165d38173f3cd84 27172 r-bioc-qtlizer_1.16.0+dfsg-1_all.deb bfac409d50d7283bf142b3a7a49d113cfea68713bcdf342a426b78b261a9d92f 11122 r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo Files: 757520799fe5f7f74fb159c3555b4e00 27172 gnu-r optional r-bioc-qtlizer_1.16.0+dfsg-1_all.deb 98882c553a2afdad1b39c39c61215fcf 11122 gnu-r optional r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo Sat Apr 27 14:32:01 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_16-18135.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NhYZub1J/r-bioc-qtlizer_1.16.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NhYZub1J/r-bioc-qtlizer_1.16.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NhYZub1J/r-bioc-qtlizer_1.16.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NhYZub1J/b1/r-bioc-qtlizer_1.16.0+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NhYZub1J/b2/r-bioc-qtlizer_1.16.0+dfsg-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.358s) 0.226s 8 calls diff 0.108s 6 calls xz 0.020s 11 calls html2text 0.003s 12 calls cmp (internal) ## compare_files (cumulative) (total time: 4.530s) 1.193s 1 call abc.DotChangesFile 1.147s 1 call abc.DebFile 1.025s 2 calls abc.XzFile 0.808s 1 call abc.DebDataTarFile 0.135s 1 call abc.HtmlFile 0.115s 1 call abc.TarFile 0.083s 1 call abc.TextFile 0.024s 1 call abc.Md5sumsFile ## container_extract (total time: 0.202s) 0.109s 6 calls diffoscope.comparators.xz.XzContainer 0.085s 58 calls diffoscope.comparators.deb.DebTarContainer 0.005s 6 calls diffoscope.comparators.tar.TarContainer 0.003s 8 calls diffoscope.comparators.deb.DebContainer ## diff (total time: 0.006s) 0.006s 4 calls linediff ## has_same_content_as (total time: 0.004s) 0.002s 3 calls abc.TextFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.DotChangesFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DebFile 0.000s 1 call abc.DebDataTarFile 0.000s 1 call abc.HtmlFile 0.000s 1 call abc.TarFile ## main (total time: 4.069s) 4.047s 2 calls outputs 0.022s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.206s) 0.204s 1 call html 0.001s 1 call text 0.001s 1 call json ## recognizes (total time: 0.315s) 0.237s 592 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.038s 260 calls diffoscope.comparators.utils.archive.ArchiveMember 0.031s 12 calls diffoscope.comparators.binary.FilesystemFile 0.009s 54 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.266s) 0.266s 12 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 5.479s CPU time consumed: 1.606s Sat Apr 27 14:32:08 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Apr 27 14:32:08 UTC 2024 E: r-bioc-qtlizer failed to build reproducibly in unstable on amd64. Sat Apr 27 14:32:10 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Apr 27 14:32:11 UTC 2024 I: Submitting 12K b1/r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo.asc Sat Apr 27 14:32:12 UTC 2024 I: Submitting 12K b2/r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo.asc Sat Apr 27 14:32:13 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 27 14:32:13 UTC 2024 I: Done submitting .buildinfo files. Sat Apr 27 14:32:13 UTC 2024 I: Removing signed r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo.asc files: removed './b1/r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo.asc' removed './b2/r-bioc-qtlizer_1.16.0+dfsg-1_amd64.buildinfo.asc'