Sun May 26 12:54:02 UTC 2024 I: starting to build seqan-raptor/unstable/amd64 on jenkins on '2024-05-26 12:53' Sun May 26 12:54:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/22301/console.log Sun May 26 12:54:02 UTC 2024 I: Downloading source for unstable/seqan-raptor=3.0.1+ds-5 --2024-05-26 12:54:03-- http://deb.debian.org/debian/pool/main/s/seqan-raptor/seqan-raptor_3.0.1%2bds-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2642 (2.6K) [text/prs.lines.tag] Saving to: ‘seqan-raptor_3.0.1+ds-5.dsc’ 0K .. 100% 314M=0s 2024-05-26 12:54:03 (314 MB/s) - ‘seqan-raptor_3.0.1+ds-5.dsc’ saved [2642/2642] Sun May 26 12:54:03 UTC 2024 I: seqan-raptor_3.0.1+ds-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-raptor Binary: seqan-raptor, seqan-raptor-doc Architecture: any all Version: 3.0.1+ds-5 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/raptor Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/seqan-raptor Vcs-Git: https://salsa.debian.org/med-team/seqan-raptor.git Testsuite: autopkgtest Testsuite-Triggers: cmake, cwltool, g++, libgtest-dev, libseqan3-dev, libsimde-dev, libxxhash-dev, libyaml-cpp-dev, nodejs, patch, pkg-config, python3-setuptools Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen , cppreference-doc-en-html , texlive-font-utils , texlive-latex-base , texlive-latex-recommended , texlive-latex-extra , texlive-plain-generic , texlive-fonts-recommended , ghostscript Package-List: seqan-raptor deb science optional arch=any seqan-raptor-doc deb doc optional arch=all profile=!nodoc Checksums-Sha1: a298b4c8b0b5ab15c49315e97dee322b95069357 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz 7ef2860a79f904e93fc00eac3cc6857fb6854b91 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz Checksums-Sha256: 3fb5f987f3c0e678d5de41ab3f9f66eae37ba5993edb294caa9e8f2c6132a55d 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz f841e6322018fe1148e249c14bd6807ea1354c220c7d3be298785372d0a7c5c2 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz Files: 650d23e7c16c308dcc95dbc6d302df1f 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz f64b145c2eb3faeda15aab4b80c083bd 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmT4eQ8ACgkQPCZ2P2xn 5uJmwxAAlivqo6IGLyaO8L23pZwtsq6NL64C9CwA6nSYsjK0igFujGGjpClmFTP5 FB0p01w494ZZJ5WezVDvIvPP7ghV2r2+hyewuvL0RQJI7OOvF9c9mosI6Ta+szpw meT5tVXZ95LAxXQJg1MIY0Y7OJ6T5JJP2jZLS2+T/S7Ye6FiLTNWDTGhbXo5pyry usNTXNCo/mYs/Yr6tbZC+oPXSOFco09Uz6K6q+6wFLLeCZBfMGUMQG8qUMnQW1Gv 1ATXRWsvjOoeiRh8r/tq3dnWO7C3F86njvO4y6S6O1mTVFRsc0ep9uKcIoviG4So MsX1yKFlsYo0QUPPohtKWnC3ZzNZ6FPrVSMJ+4ItyLGahEgQbty/ePW08HqQjJak LMXtlF4wtuL2szIQr5uxGnDw6pheuByzmRwAVrsiVuIvT2NZZqyz4pzWSD04wfb0 /0mF5jqjW9+GBwutu7/WKYVN7WjPh4NSwDdHauVHDEQmYkVldsrNEWv7ALpwvmiB gu0vWFyumY3kEjto/kZ1YjCroqnO/8/lPzn9dYnS8UIhX0yQmLdnq374QLiH9QCm 9E3j73ucD19l38AI9QuRLpPZue7ziqZ233iSjRhguxkK75om5th9YIxGPUJlxtZO d9h5YKKa/2vEYLz37i8RARxfNaQ00TcPBEZ0qxgDYp4d1CxA89k= =Ijhw -----END PGP SIGNATURE----- Sun May 26 12:54:03 UTC 2024 I: Checking whether the package is not for us Sun May 26 12:54:03 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun May 26 12:54:03 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun May 26 13:10:48 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 26 00:54:06 -12 2024 I: pbuilder-time-stamp: 1716728046 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-raptor_3.0.1+ds-5.dsc] I: copying [./seqan-raptor_3.0.1+ds.orig.tar.xz] I: copying [./seqan-raptor_3.0.1+ds-5.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 6 13:05:19 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting seqan-raptor in seqan-raptor-3.0.1+ds dpkg-source: info: unpacking seqan-raptor_3.0.1+ds.orig.tar.xz dpkg-source: info: unpacking seqan-raptor_3.0.1+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy dpkg-source: info: applying chopper_no_test dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying debian_xxhash dpkg-source: info: applying debian_cppreference dpkg-source: info: applying doxygen_update I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3418723/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5a66d8f91a294c058742777fbea8ee6b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3418723' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hXxTIjbW/pbuilderrc_yYHj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hXxTIjbW/b1 --logfile b1/build.log seqan-raptor_3.0.1+ds-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 25 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3418723/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19718 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.3.0~rc.1); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libyaml-cpp-dev; however: Package libyaml-cpp-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on cppreference-doc-en-html; however: Package cppreference-doc-en-html is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cppreference-doc-en-html{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} googletest{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcereal-dev{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libgtest-dev{a} libharfbuzz0b{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm16t64{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtiff6{a} libtool{a} libuchardet0{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libxxhash-dev{a} libyaml-cpp-dev{a} libyaml-cpp0.8{a} libz3-4{a} libzzip-0-13t64{a} lynx{a} lynx-common{a} m4{a} man-db{a} media-types{a} netbase{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates dbus default-jre dvisvgm fonts-droid-fallback krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern mailcap ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 174 newly installed, 0 to remove and 0 not upgraded. Need to get 263 MB of archives. After unpacking 1122 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-1 [94.1 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-4 [148 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.29.3-1 [2167 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.29.3-1+b1 [10.7 MB] Get: 56 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 lynx-common all 2.9.1-1 [1193 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 lynx amd64 2.9.1-1 [638 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 cppreference-doc-en-html all 20170409-2 [3593 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 68 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libllvm16t64 amd64 1:16.0.6-27 [23.1 MB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27 [11.5 MB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libclang1-16t64 amd64 1:16.0.6-27 [6581 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 88 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.03.1~dfsg~git20240518-1 [148 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.03.1~dfsg~git20240518-1 [474 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.42-2 [80.4 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-15.1+b1 [15.1 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b2 [64.3 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.03.1~dfsg~git20240518-1 [2509 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.03.1~dfsg~git20240518-1 [50.2 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 googletest all 1.14.0-1 [512 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 29-2 [5276 B] Get: 123 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.2-2 [1485 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2023.20230311.66589-9+b2 [154 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B] Get: 141 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2023.20230311.66589-9+b2 [47.2 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libseqan3-dev all 3.3.0+ds-1 [758 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-1 [465 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2023.20230311.66589-9+b2 [62.2 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9+b2 [113 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libxxhash-dev amd64 0.8.2-2+b1 [79.3 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b1 [132 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libyaml-cpp-dev amd64 0.8.0+dfsg-6+b1 [172 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2+b1 [56.2 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1 [350 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2023.20230311.66589-9+b2 [8495 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2023.20240207-1 [22.0 MB] Get: 168 http://deb.debian.org/debian unstable/main amd64 texlive-font-utils all 2023.20240207-1 [7046 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2023.20240207-1 [16.7 MB] Get: 173 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2023.20240207-1 [19.7 MB] Get: 174 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2023.20240207-1 [29.0 MB] Fetched 263 MB in 8s (32.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20568 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21560 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-raptor-3.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-raptor_3.0.1+ds-5_source.changes dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 3.0.1+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_clean dh_auto_clean --sourcedirectory=test/unit --builddirectory build_unit #dh_auto_clean --sourcedirectory=test/performance --builddirectory build_performance #dh_auto_clean --sourcedirectory=test/header --builddirectory build_header dh_auto_clean --sourcedirectory=test/snippet --builddirectory build_snippet make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_clean-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_clean --indep --builddir doc_build make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF .. -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Detected as running from a repository checkout… -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: via -mpopcnt -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3.1 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Finding program ccache -- Finding program ccache - Failed -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Configuring done (15.1s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu dh_auto_configure --sourcedirectory=test/unit --builddirectory build_unit -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF cd build_unit && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/unit -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Detected as running from a repository checkout… -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: via -mpopcnt -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3.1 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Finding program ccache -- Finding program ccache - Failed -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Test dependency: Google Test 1.14.0 found. -- Configuring done (12.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit #dh_auto_configure --sourcedirectory=test/performance --builddirectory build_performance -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF #dh_auto_configure --sourcedirectory=test/header --builddirectory build_header -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF dh_auto_configure --sourcedirectory=test/snippet --builddirectory build_snippet -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF cd build_snippet && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/snippet -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Detected as running from a repository checkout… -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: via -mpopcnt -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3.1 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include -- Finding program ccache -- Finding program ccache - Failed -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Test dependency: Google Test 1.14.0 found. -- Configuring done (11.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_configure --sourcedirectory=test/documentation --builddirectory doc_build -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON cd doc_build && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON ../test/documentation -- Searching for doxygen. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen missing components: dot -- Could not find dot tool. Disabling dot support. -- Configuring doc. -- Add doc test. -- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED RAPTOR_NATIVE_BUILD RAPTOR_STRIP_BINARY RAPTOR_SUBMODULES_DIR build_search -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_build --arch cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds -B/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search 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src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o [ 3%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o [ 5%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o [ 9%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o [ 9%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o [ 11%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o [ 13%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o [ 15%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o [ 19%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o [ 19%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o [ 21%] Built target xxhash_project [ 21%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 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-Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp [ 23%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" 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/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/raptor_search.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend cd 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/compute_kmers.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/multiple_error_model.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake "--color=" [ 25%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o [ 27%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_hibf.cpp [ 31%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o [ 31%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp [ 33%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp [ 35%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o [ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 39%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp [ 41%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp [ 43%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 45%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 47%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp:9: /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 610 | # define SIMDE_POLY128_TYPE __int128 | ^~~~~~~~ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 49%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp [ 50%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp [ 52%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp [ 54%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Linking CXX static library ../../lib/libraptor_threshold.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake [ 58%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o /usr/bin/ranlib ../../lib/libraptor_threshold.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 58%] Built target raptor_threshold [ 60%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp [ 62%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 64%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp [ 66%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp [ 68%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Linking CXX static library ../../lib/libraptor_prepare.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o /usr/bin/ranlib ../../lib/libraptor_prepare.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 70%] Built target raptor_prepare make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 72%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp [ 74%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp [ 76%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp [ 78%] Linking CXX static library ../../../lib/libchopper_layout_lib.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../../../lib/libchopper_layout_lib.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 78%] Built target chopper_layout_lib make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp [ 82%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp [ 84%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o /usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 84%] Built target raptor_build_hibf In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/toolbox.hpp:11, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/data_store.hpp:8, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp:6: /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 610 | # define SIMDE_POLY128_TYPE __int128 | ^~~~~~~~ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ [ 86%] Linking CXX static library ../../lib/libraptor_search.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o /usr/bin/ranlib ../../lib/libraptor_search.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 86%] Built target raptor_search [ 88%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 88%] Built target raptor_upgrade [ 90%] Linking CXX static library ../../lib/libraptor_build.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o /usr/bin/ranlib ../../lib/libraptor_build.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 90%] Built target raptor_build [ 92%] Linking CXX static library ../../lib/libraptor_layout.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o /usr/bin/ranlib ../../lib/libraptor_layout.a [ 94%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_argument_parsing.a CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 94%] Built target raptor_layout /usr/bin/ranlib ../../lib/libraptor_argument_parsing.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 94%] Built target raptor_argument_parsing make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp [ 98%] Linking CXX executable ../bin/raptor cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a /usr/lib/x86_64-linux-gnu/libxxhash.so [100%] Linking CXX executable ../../../bin/chopper cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [100%] Built target chopper make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [100%] Built target raptor make[3]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' obj-*/bin/raptor --export-help man > debian/raptor.1 obj-*/bin/raptor build --export-help man > debian/raptor-build.1 obj-*/bin/raptor search --export-help man > debian/raptor-search.1 obj-*/bin/raptor layout --export-help man > debian/raptor-layout.1 obj-*/bin/raptor prepare --export-help man > debian/raptor-prepare.1 obj-*/bin/raptor upgrade --export-help man > debian/raptor-upgrade.1 obj-*/bin/raptor build --export-help cwl > debian/raptor-build.cwl obj-*/bin/raptor search --export-help cwl > debian/raptor-search.cwl obj-*/bin/raptor layout --export-help cwl > debian/raptor-layout.cwl obj-*/bin/raptor prepare --export-help cwl > debian/raptor-prepare.cwl obj-*/bin/raptor upgrade --export-help cwl > debian/raptor-upgrade.cwl dh_auto_build --arch --builddirectory build_unit cd build_unit && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit -B/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E 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src/upgrade/CMakeFiles/raptor_upgrade.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 1%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o [ 2%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o [ 7%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o [ 7%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o [ 7%] Built target xxhash_project [ 7%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o [ 17%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o [ 17%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o [ 17%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o [ 17%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem 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CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp [ 20%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o [ 21%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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-DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp [ 22%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp [ 24%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 25%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp [ 26%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp [ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp [ 29%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp [ 30%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp:9: /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 610 | # define SIMDE_POLY128_TYPE __int128 | ^~~~~~~~ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp [ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp [ 34%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp [ 35%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp [ 36%] Linking CXX static library ../../lib/libraptor_threshold.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o /usr/bin/ranlib ../../lib/libraptor_threshold.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 36%] Built target raptor_threshold [ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp [ 41%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp [ 43%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Linking CXX static library ../../lib/libraptor_prepare.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o /usr/bin/ranlib ../../lib/libraptor_prepare.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 45%] Built target raptor_prepare make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 46%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o [ 48%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp [ 49%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Linking CXX static library ../../../lib/libchopper_layout_lib.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../../../lib/libchopper_layout_lib.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 50%] Built target chopper_layout_lib make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 51%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 53%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp [ 54%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o /usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 54%] Built target raptor_build_hibf In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/toolbox.hpp:11, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/data_store.hpp:8, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp:6: /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 610 | # define SIMDE_POLY128_TYPE __int128 | ^~~~~~~~ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ [ 55%] Linking CXX static library ../../lib/libraptor_search.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o /usr/bin/ranlib ../../lib/libraptor_search.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 55%] Built target raptor_search [ 56%] Linking CXX static library ../../lib/libraptor_build.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o /usr/bin/ranlib ../../lib/libraptor_build.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 56%] Built target raptor_build [ 58%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 58%] Built target raptor_upgrade [ 59%] Linking CXX static library ../../lib/libraptor_layout.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o /usr/bin/ranlib ../../lib/libraptor_layout.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 59%] Built target raptor_layout [ 60%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o 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-isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp [ 63%] Linking CXX executable ../bin/raptor cd 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../lib/libraptor_layout.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a /usr/lib/x86_64-linux-gnu/libxxhash.so [ 64%] Linking CXX executable ../../../bin/chopper cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi 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'/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_hibf_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_ibf_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade/CMakeFiles/upgrade_test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f api/CMakeFiles/issue_142.dir/build.make api/CMakeFiles/issue_142.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f api/CMakeFiles/memory_usage.dir/build.make api/CMakeFiles/memory_usage.dir/build make -f cli/build/CMakeFiles/build_hibf_chopper_test.dir/build.make cli/build/CMakeFiles/build_hibf_chopper_test.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make cli/build/CMakeFiles/build_ibf_compressed_test.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/argument_parsing/CMakeFiles/options_test.dir/build.make cli/argument_parsing/CMakeFiles/options_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build.make cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/build/CMakeFiles/build_ibf_test.dir/build.make cli/build/CMakeFiles/build_ibf_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f api/CMakeFiles/validate_shape.dir/build.make api/CMakeFiles/validate_shape.dir/build make -f cli/search/CMakeFiles/search_hibf_test.dir/build.make cli/search/CMakeFiles/search_hibf_test.dir/build make -f cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/build make -f cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 65%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o [ 67%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o [ 68%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o [ 70%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o [ 70%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/issue_142.dir/issue_142.cpp.o -MF CMakeFiles/issue_142.dir/issue_142.cpp.o.d -o CMakeFiles/issue_142.dir/issue_142.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api/issue_142.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o -MF CMakeFiles/options_test.dir/options_test.cpp.o.d -o CMakeFiles/options_test.dir/options_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/argument_parsing/options_test.cpp [ 72%] Building CXX object cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o [ 73%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -MF CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o.d -o CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_hibf_chopper_test.cpp [ 75%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o [ 75%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -MF CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o.d -o CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_hibf_test.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o -MF CMakeFiles/memory_usage.dir/memory_usage.cpp.o.d -o CMakeFiles/memory_usage.dir/memory_usage.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api/memory_usage.cpp [ 78%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o [ 78%] Building CXX object cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o [ 79%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -MF CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o.d -o CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_hibf_test.cpp cd 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-isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -MF CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o.d -o CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -c 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/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -MF CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o.d -o CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_ibf_partitioned_test.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o -MF CMakeFiles/validate_shape.dir/validate_shape.cpp.o.d -o CMakeFiles/validate_shape.dir/validate_shape.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api/validate_shape.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -MF CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o.d -o CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_ibf_compressed_test.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" 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-DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -MF CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o.d -o CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_hibf_preprocessing_test.cpp [ 81%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o [ 82%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -MF CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o.d -o CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_ibf_test.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -MF CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o.d -o CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/upgrade/upgrade_test.cpp [ 83%] Linking CXX executable memory_usage cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/memory_usage.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/memory_usage.dir/memory_usage.cpp.o -o memory_usage ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest [ 84%] Linking CXX executable issue_142 cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/issue_142.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/issue_142.dir/issue_142.cpp.o -o issue_142 ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 84%] Built target issue_142 make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 84%] Built target memory_usage [ 86%] Linking CXX executable build_hibf_chopper_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_hibf_chopper_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -o build_hibf_chopper_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest [ 87%] Linking CXX executable 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../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest [ 88%] Linking CXX executable build_ibf_partitioned_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_partitioned_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -o build_ibf_partitioned_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest [ 89%] Linking CXX executable search_ibf_preprocessing_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script 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../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest [ 91%] Linking CXX executable search_ibf_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -o search_ibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest [ 92%] Linking CXX executable options_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/options_test.dir/options_test.cpp.o -o options_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest [ 93%] Linking CXX executable upgrade_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/upgrade_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -o upgrade_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 93%] Built target build_hibf_chopper_test [ 94%] Linking CXX executable build_ibf_compressed_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_compressed_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -o build_ibf_compressed_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main 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-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/validate_shape.dir/validate_shape.cpp.o -o validate_shape ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory 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'/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color=" make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp [ 1%] Built target xxhash_project make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend [ 5%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp [ 5%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o [ 6%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake "--color=" [ 8%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o [ 10%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_hibf.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/c++ 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-Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp [ 13%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp [ 15%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o [ 16%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o [ 18%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o [ 20%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/multiple_error_model.cpp [ 22%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o [ 23%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o [ 25%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o [ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o [ 28%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ 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-Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp [ 30%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o [ 32%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp [ 33%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp [ 35%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp [ 37%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 38%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 40%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp:9: /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 610 | # define SIMDE_POLY128_TYPE __int128 | ^~~~~~~~ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp [ 44%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp [ 45%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp [ 47%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 49%] Linking CXX static library ../../lib/libraptor_threshold.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o /usr/bin/ranlib ../../lib/libraptor_threshold.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Built target raptor_threshold [ 50%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 52%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 55%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 57%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp [ 59%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 61%] Linking CXX static library ../../lib/libraptor_prepare.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o /usr/bin/ranlib ../../lib/libraptor_prepare.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 61%] Built target raptor_prepare make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 62%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp [ 64%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o [ 66%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Linking CXX static library ../../../lib/libchopper_layout_lib.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../../../lib/libchopper_layout_lib.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 67%] Built target chopper_layout_lib make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 69%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp [ 71%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp [ 72%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o /usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 72%] Built target raptor_build_hibf [ 74%] Linking CXX static library ../../lib/libraptor_search.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o /usr/bin/ranlib ../../lib/libraptor_search.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 74%] Built target raptor_search In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/toolbox.hpp:11, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/data_store.hpp:8, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp:6: /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 610 | # define SIMDE_POLY128_TYPE __int128 | ^~~~~~~~ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ [ 76%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 76%] Built target raptor_upgrade [ 77%] Linking CXX static library ../../lib/libraptor_build.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o /usr/bin/ranlib ../../lib/libraptor_build.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 77%] Built target raptor_build [ 79%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o /usr/bin/ranlib ../../lib/libraptor_argument_parsing.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 79%] Built target raptor_argument_parsing [ 81%] Linking CXX static library ../../lib/libraptor_layout.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o /usr/bin/ranlib ../../lib/libraptor_layout.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 81%] Built target raptor_layout make -f CMakeFiles/snippet_main.dir/build.make CMakeFiles/snippet_main.dir/depend make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/snippet_main.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f CMakeFiles/snippet_main.dir/build.make CMakeFiles/snippet_main.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 83%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp [ 84%] Building CXX object CMakeFiles/snippet_main.dir/snippet_main.cpp.o /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/snippet_main.dir/snippet_main.cpp.o -MF CMakeFiles/snippet_main.dir/snippet_main.cpp.o.d -o CMakeFiles/snippet_main.dir/snippet_main.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp [ 86%] Linking CXX static library libsnippet_main.a /usr/bin/cmake -P CMakeFiles/snippet_main.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/snippet_main.dir/link.txt --verbose=1 /usr/bin/ar qc libsnippet_main.a CMakeFiles/snippet_main.dir/snippet_main.cpp.o /usr/bin/ranlib libsnippet_main.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 86%] Built target snippet_main make -f CMakeFiles/bin_indices_of_ibf_snippet.dir/build.make CMakeFiles/bin_indices_of_ibf_snippet.dir/depend make -f CMakeFiles/filename_of_user_bin_snippet.dir/build.make CMakeFiles/filename_of_user_bin_snippet.dir/depend make -f CMakeFiles/snippet_main_snippet.dir/build.make CMakeFiles/snippet_main_snippet.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/bin_indices_of_ibf_snippet.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/snippet_main_snippet.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/filename_of_user_bin_snippet.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f CMakeFiles/bin_indices_of_ibf_snippet.dir/build.make CMakeFiles/bin_indices_of_ibf_snippet.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f CMakeFiles/filename_of_user_bin_snippet.dir/build.make CMakeFiles/filename_of_user_bin_snippet.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f CMakeFiles/snippet_main_snippet.dir/build.make CMakeFiles/snippet_main_snippet.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 88%] Building CXX object CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -MF CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o.d -o CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.cpp [ 89%] Building CXX object CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -MF CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o.d -o CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp [ 91%] Building CXX object CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o -MF CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o.d -o CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp [ 93%] Linking CXX executable snippet_main_snippet /usr/bin/cmake -E cmake_link_script CMakeFiles/snippet_main_snippet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o -o snippet_main_snippet libsnippet_main.a -lgtest_main -lgtest lib/libraptor_argument_parsing.a lib/libraptor_build.a lib/libraptor_build_hibf.a lib/libraptor_prepare.a lib/libraptor_search.a lib/libraptor_threshold.a lib/libraptor_upgrade.a lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 93%] Built target snippet_main_snippet [ 94%] Linking CXX executable hibf/bin_indices_of_ibf_snippet /usr/bin/cmake -E cmake_link_script CMakeFiles/bin_indices_of_ibf_snippet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -o hibf/bin_indices_of_ibf_snippet libsnippet_main.a -lgtest_main -lgtest lib/libraptor_argument_parsing.a lib/libraptor_build.a lib/libraptor_build_hibf.a lib/libraptor_prepare.a lib/libraptor_search.a lib/libraptor_threshold.a lib/libraptor_upgrade.a lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 94%] Built target bin_indices_of_ibf_snippet [ 96%] Linking CXX executable hibf/filename_of_user_bin_snippet /usr/bin/cmake -E cmake_link_script CMakeFiles/filename_of_user_bin_snippet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -o hibf/filename_of_user_bin_snippet libsnippet_main.a -lgtest_main -lgtest lib/libraptor_argument_parsing.a lib/libraptor_build.a lib/libraptor_build_hibf.a lib/libraptor_prepare.a lib/libraptor_search.a lib/libraptor_threshold.a lib/libraptor_upgrade.a lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 96%] Built target filename_of_user_bin_snippet [ 98%] Linking CXX executable ../bin/raptor cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a /usr/lib/x86_64-linux-gnu/libxxhash.so make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 98%] Built target raptor [100%] Linking CXX executable ../../../bin/chopper cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [100%] Built target chopper make[3]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_build --indep --builddirectory doc_build cd doc_build && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation -B/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make -f CMakeFiles/download-cppreference-doxygen-web-tag.dir/build.make CMakeFiles/download-cppreference-doxygen-web-tag.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation /build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/CMakeFiles/download-cppreference-doxygen-web-tag.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make -f CMakeFiles/download-cppreference-doxygen-web-tag.dir/build.make CMakeFiles/download-cppreference-doxygen-web-tag.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' [ 11%] Creating directories for 'download-cppreference-doxygen-web-tag' /usr/bin/cmake -Dcfgdir= -P /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/tmp/download-cppreference-doxygen-web-tag-mkdirs.cmake /usr/bin/cmake -E touch /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-mkdir [ 22%] No download step for 'download-cppreference-doxygen-web-tag' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/src && /usr/bin/cmake -E echo_append cd /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/src && /usr/bin/cmake -E touch /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-download [ 33%] No 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'download-cppreference-doxygen-web-tag' /usr/bin/cmake -E echo_append /usr/bin/cmake -E touch /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-build [ 77%] Performing install step for 'download-cppreference-doxygen-web-tag' ln -s /usr/share/devhelp/books/cppreference-doxygen-web.tag.xml /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/ /usr/bin/cmake -E touch /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-install [ 88%] Completed 'download-cppreference-doxygen-web-tag' /usr/bin/cmake -E make_directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/CMakeFiles /usr/bin/cmake -E touch /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/CMakeFiles/download-cppreference-doxygen-web-tag-complete /usr/bin/cmake -E touch /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-done make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' [ 88%] Built target download-cppreference-doxygen-web-tag make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation /build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/CMakeFiles/doc.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' [100%] Generating developer API documentation with Doxygen /usr/bin/doxygen Adding custom extension mapping: '.no_extension' will be treated as language 'c++' Doxygen version used: 1.9.8 Parsing layout file /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/DoxygenLayout.xml... Searching for include files... Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include Searching for example files... Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf Searching for images... 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Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/prepare Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup/quickstart_cmake Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/01_introduction Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/03_index Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/04_search Reading and parsing tag files Reading tag file '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/cppreference-doxygen-web.tag.xml', location 'https://en.cppreference.com/w/'... Parsing files Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/adjust_seed.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/adjust_seed.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/build_arguments.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/build_arguments.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/build_parsing.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/build_parsing.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/compute_bin_size.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/compute_bin_size.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/init_shared_meta.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/init_shared_meta.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/memory_usage.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/memory_usage.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/parse_bin_path.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/parse_bin_path.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/prepare_arguments.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/prepare_arguments.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/prepare_parsing.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/prepare_parsing.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/search_arguments.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/search_arguments.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/search_parsing.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/search_parsing.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/shared.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/shared.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/timer.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/timer.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/upgrade_arguments.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/upgrade_arguments.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/upgrade_parsing.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/upgrade_parsing.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/validators.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing/validators.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/build_ibf.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/build_ibf.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/emplace_iterator.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/emplace_iterator.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/bin_size_in_bits.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/bin_size_in_bits.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/chopper_build.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/chopper_build.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/chopper_pack_record.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/chopper_pack_record.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/compute_kmers.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/compute_kmers.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/insert_into_ibf.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/insert_into_ibf.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/loop_over_children.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/loop_over_children.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/node_data.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/node_data.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/parse_chopper_pack_header.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/parse_chopper_pack_header.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/parse_chopper_pack_line.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/parse_chopper_pack_line.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_parent_kmers.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_parent_kmers.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/index_factory.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/index_factory.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/max_count_per_partition.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/max_count_per_partition.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/partition_config.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/partition_config.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/raptor_build.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/raptor_build.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/store_index.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/store_index.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/call_parallel_on_bins.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/call_parallel_on_bins.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/dna4_traits.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/dna4_traits.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/file_reader.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/file_reader.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/hierarchical_interleaved_bloom_filter.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/hierarchical_interleaved_bloom_filter.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/index.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/index.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/layout/raptor_layout.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/layout/raptor_layout.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/prepare/compute_minimiser.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/prepare/compute_minimiser.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/prepare/cutoff.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/prepare/cutoff.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/raptor.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/raptor.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/do_parallel.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/do_parallel.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/load_index.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/load_index.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_hibf.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_hibf.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_ibf.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_ibf.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_partitioned_ibf.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_partitioned_ibf.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_singular_ibf.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/search_singular_ibf.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/sync_out.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search/sync_out.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/strong_types.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/strong_types.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/forward_strand_minimiser.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/forward_strand_minimiser.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/logspace.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/logspace.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/multiple_error_model.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/multiple_error_model.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/one_error_model.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/one_error_model.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/one_indirect_error_model.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/one_indirect_error_model.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/pascal_row.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/pascal_row.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/precompute_correction.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/precompute_correction.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/precompute_threshold.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/precompute_threshold.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/threshold.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/threshold.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/threshold_parameters.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold/threshold_parameters.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade/index_upgrader.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade/index_upgrader.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade/upgrade.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade/upgrade.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/version.hpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/version.hpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/compute_kmers.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/compute_kmers.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/raptor_search.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/raptor_search.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_hibf.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_hibf.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/multiple_error_model.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/multiple_error_model.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp... Parsing file /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures/hibf.svg... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures/ibf.svg... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures/Raptor_no_title.svg... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup/quickstart_cmake/index.md... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/01_introduction/index.md... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout/index.md... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/03_index/index.md... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/04_search/index.md... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/LICENSE.md... Reading /build/reproducible-path/seqan-raptor-3.0.1+ds/CHANGELOG.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating image form_0.png for formula Generating image form_1.png for formula Generating image form_2.png for formula Generating image form_3.png for formula Generating image form_4.png for formula Generating image form_5.png for formula Generating image form_6.png for formula Generating image form_7.png for formula Generating image form_8.png for formula Generating image form_9.png for formula Generating image form_10.png for formula Generating image form_11.png for formula Generating image form_12.png for formula Generating image form_13.png for formula Generating image form_14.png for formula Generating image form_15.png for formula Generating image form_16.png for formula Generating image form_17.png for formula Generating image form_18.png for formula Generating image form_19.png for formula Generating image form_20.png for formula Generating image form_21.png for formula Generating image form_22.png for formula Generating image form_23.png for formula Generating image form_0_dark.png for formula Generating image form_1_dark.png for formula Generating image form_2_dark.png for formula Generating image form_3_dark.png for formula Generating image form_4_dark.png for formula Generating image form_5_dark.png for formula Generating image form_6_dark.png for formula Generating image form_7_dark.png for formula Generating image form_8_dark.png for formula Generating image form_9_dark.png for formula Generating image form_10_dark.png for formula Generating image form_11_dark.png for formula Generating image form_12_dark.png for formula Generating image form_13_dark.png for formula Generating image form_14_dark.png for formula Generating image form_15_dark.png for formula Generating image form_16_dark.png for formula Generating image form_17_dark.png for formula Generating image form_18_dark.png for formula Generating image form_19_dark.png for formula Generating image form_20_dark.png for formula Generating image form_21_dark.png for formula Generating image form_22_dark.png for formula Generating image form_23_dark.png for formula Generating example documentation... Generating file sources... Parsing code for file CHANGELOG.md... Parsing code for file hibf.svg... Parsing code for file ibf.svg... Parsing code for file Raptor_no_title.svg... Parsing code for file index.md... Parsing code for file index.md... Parsing code for file index.md... Parsing code for file index.md... Parsing code for file index.md... Generating code for file adjust_seed.hpp... Generating code for file build_arguments.hpp... Generating code for file build_parsing.hpp... Generating code for file compute_bin_size.hpp... Generating code for file init_shared_meta.hpp... Generating code for file memory_usage.hpp... Generating code for file parse_bin_path.hpp... Generating code for file prepare_arguments.hpp... Generating code for file prepare_parsing.hpp... Generating code for file search_arguments.hpp... Generating code for file search_parsing.hpp... Generating code for file shared.hpp... Generating code for file timer.hpp... Generating code for file upgrade_arguments.hpp... Generating code for file upgrade_parsing.hpp... Generating code for file validators.hpp... Generating code for file build_ibf.hpp... Generating code for file emplace_iterator.hpp... Generating code for file bin_size_in_bits.hpp... Generating code for file build_data.hpp... Generating code for file chopper_build.hpp... Generating code for file chopper_pack_record.hpp... Generating code for file compute_kmers.hpp... Generating code for file construct_ibf.hpp... Generating code for file create_ibfs_from_chopper_pack.hpp... Generating code for file hierarchical_build.hpp... Generating code for file insert_into_ibf.hpp... Generating code for file loop_over_children.hpp... Generating code for file node_data.hpp... Generating code for file parse_chopper_pack_header.hpp... Generating code for file parse_chopper_pack_line.hpp... Generating code for file read_chopper_pack_file.hpp... Generating code for file update_parent_kmers.hpp... Generating code for file update_user_bins.hpp... Generating code for file index_factory.hpp... Generating code for file max_count_per_partition.hpp... Generating code for file partition_config.hpp... Generating code for file raptor_build.hpp... Generating code for file store_index.hpp... Generating code for file call_parallel_on_bins.hpp... Generating code for file dna4_traits.hpp... Generating code for file file_reader.hpp... Generating code for file hierarchical_interleaved_bloom_filter.hpp... Generating code for file index.hpp... Generating code for file raptor_layout.hpp... Generating code for file compute_minimiser.hpp... Generating code for file cutoff.hpp... Generating code for file raptor.hpp... Generating code for file do_parallel.hpp... Generating code for file load_index.hpp... Generating code for file search.hpp... Generating code for file search_hibf.hpp... Generating code for file search_ibf.hpp... Generating code for file search_partitioned_ibf.hpp... Generating code for file search_singular_ibf.hpp... Generating code for file sync_out.hpp... Generating code for file strong_types.hpp... Generating code for file forward_strand_minimiser.hpp... Generating code for file logspace.hpp... Generating code for file multiple_error_model.hpp... Generating code for file one_error_model.hpp... Generating code for file one_indirect_error_model.hpp... Generating code for file pascal_row.hpp... Generating code for file precompute_correction.hpp... Generating code for file precompute_threshold.hpp... Generating code for file threshold.hpp... Generating code for file threshold_parameters.hpp... Generating code for file index_upgrader.hpp... Generating code for file upgrade.hpp... Generating code for file version.hpp... Parsing code for file LICENSE.md... Parsing code for file build_parsing.cpp... Parsing code for file compute_bin_size.cpp... Parsing code for file init_shared_meta.cpp... Parsing code for file parse_bin_path.cpp... Parsing code for file prepare_parsing.cpp... Parsing code for file search_parsing.cpp... Parsing code for file upgrade_parsing.cpp... Parsing code for file build_ibf.cpp... Parsing code for file bin_size_in_bits.cpp... Parsing code for file chopper_build.cpp... Parsing code for file compute_kmers.cpp... Parsing code for file construct_ibf.cpp... Parsing code for file create_ibfs_from_chopper_pack.cpp... Parsing code for file hierarchical_build.cpp... Parsing code for file insert_into_ibf.cpp... Parsing code for file loop_over_children.cpp... Parsing code for file parse_chopper_pack_header.cpp... Parsing code for file parse_chopper_pack_line.cpp... Parsing code for file read_chopper_pack_file.cpp... Parsing code for file update_parent_kmers.cpp... Parsing code for file update_user_bins.cpp... Parsing code for file max_count_per_partition.cpp... Parsing code for file raptor_build.cpp... Parsing code for file raptor_layout.cpp... Parsing code for file compute_minimiser.cpp... Parsing code for file raptor.cpp... Parsing code for file raptor_search.cpp... Parsing code for file search_hibf.cpp... Parsing code for file search_ibf.cpp... Parsing code for file search_partitioned_ibf.cpp... Parsing code for file multiple_error_model.cpp... Parsing code for file one_error_model.cpp... Parsing code for file one_indirect_error_model.cpp... Parsing code for file pascal_row.cpp... Parsing code for file precompute_correction.cpp... Parsing code for file precompute_threshold.cpp... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file CMakeLists.txt... Parsing code for file raptor_upgrade.cpp... Generating file documentation... Generating docs for file adjust_seed.hpp... Generating docs for file build_arguments.hpp... Generating docs for file build_parsing.hpp... Generating docs for file compute_bin_size.hpp... Generating docs for file init_shared_meta.hpp... Generating docs for file memory_usage.hpp... Generating docs for file parse_bin_path.hpp... Generating docs for file prepare_arguments.hpp... Generating docs for file prepare_parsing.hpp... Generating docs for file search_arguments.hpp... Generating docs for file search_parsing.hpp... Generating docs for file shared.hpp... Generating docs for file timer.hpp... Generating docs for file upgrade_arguments.hpp... Generating docs for file upgrade_parsing.hpp... Generating docs for file validators.hpp... Generating docs for file build_ibf.hpp... Generating docs for file emplace_iterator.hpp... Generating docs for file bin_size_in_bits.hpp... Generating docs for file build_data.hpp... Generating docs for file chopper_build.hpp... Generating docs for file chopper_pack_record.hpp... Generating docs for file compute_kmers.hpp... Generating docs for file construct_ibf.hpp... Generating docs for file create_ibfs_from_chopper_pack.hpp... Generating docs for file hierarchical_build.hpp... Generating docs for file insert_into_ibf.hpp... Generating docs for file loop_over_children.hpp... Generating docs for file node_data.hpp... Generating docs for file parse_chopper_pack_header.hpp... Generating docs for file parse_chopper_pack_line.hpp... Generating docs for file read_chopper_pack_file.hpp... Generating docs for file update_parent_kmers.hpp... Generating docs for file update_user_bins.hpp... Generating docs for file index_factory.hpp... Generating docs for file max_count_per_partition.hpp... Generating docs for file partition_config.hpp... Generating docs for file raptor_build.hpp... Generating docs for file store_index.hpp... Generating docs for file call_parallel_on_bins.hpp... Generating docs for file dna4_traits.hpp... Generating docs for file file_reader.hpp... Generating docs for file hierarchical_interleaved_bloom_filter.hpp... Generating docs for file index.hpp... Generating docs for file raptor_layout.hpp... Generating docs for file compute_minimiser.hpp... Generating docs for file cutoff.hpp... Generating docs for file raptor.hpp... Generating docs for file do_parallel.hpp... Generating docs for file load_index.hpp... Generating docs for file search.hpp... Generating docs for file search_hibf.hpp... Generating docs for file search_ibf.hpp... Generating docs for file search_partitioned_ibf.hpp... Generating docs for file search_singular_ibf.hpp... Generating docs for file sync_out.hpp... Generating docs for file strong_types.hpp... Generating docs for file forward_strand_minimiser.hpp... Generating docs for file logspace.hpp... Generating docs for file multiple_error_model.hpp... Generating docs for file one_error_model.hpp... Generating docs for file one_indirect_error_model.hpp... Generating docs for file pascal_row.hpp... Generating docs for file precompute_correction.hpp... Generating docs for file precompute_threshold.hpp... Generating docs for file threshold.hpp... Generating docs for file threshold_parameters.hpp... Generating docs for file index_upgrader.hpp... Generating docs for file upgrade.hpp... Generating docs for file version.hpp... Generating docs for file build_parsing.cpp... Generating docs for file compute_bin_size.cpp... Generating docs for file init_shared_meta.cpp... Generating docs for file parse_bin_path.cpp... Generating docs for file prepare_parsing.cpp... Generating docs for file search_parsing.cpp... Generating docs for file upgrade_parsing.cpp... Generating docs for file build_ibf.cpp... Generating docs for file bin_size_in_bits.cpp... Generating docs for file chopper_build.cpp... Generating docs for file compute_kmers.cpp... Generating docs for file construct_ibf.cpp... Generating docs for file create_ibfs_from_chopper_pack.cpp... Generating docs for file hierarchical_build.cpp... Generating docs for file insert_into_ibf.cpp... Generating docs for file loop_over_children.cpp... Generating docs for file parse_chopper_pack_header.cpp... Generating docs for file parse_chopper_pack_line.cpp... Generating docs for file read_chopper_pack_file.cpp... Generating docs for file update_parent_kmers.cpp... Generating docs for file update_user_bins.cpp... Generating docs for file max_count_per_partition.cpp... Generating docs for file raptor_build.cpp... Generating docs for file raptor_layout.cpp... Generating docs for file compute_minimiser.cpp... Generating docs for file raptor.cpp... Generating docs for file raptor_search.cpp... Generating docs for file search_hibf.cpp... Generating docs for file search_ibf.cpp... Generating docs for file search_partitioned_ibf.cpp... Generating docs for file multiple_error_model.cpp... Generating docs for file one_error_model.cpp... Generating docs for file one_indirect_error_model.cpp... Generating docs for file pascal_row.cpp... Generating docs for file precompute_correction.cpp... Generating docs for file precompute_threshold.cpp... Generating docs for file raptor_upgrade.cpp... Generating page documentation... Generating docs for page setup... Generating docs for page tutorial_first_steps... Generating docs for page tutorial_layout... Generating docs for page tutorial_index... Generating docs for page tutorial_search... Generating docs for page md__2build_2reproducible-path_2seqan-raptor-3_80_81_09ds_2LICENSE... Generating docs for page md__2build_2reproducible-path_2seqan-raptor-3_80_81_09ds_2CHANGELOG... Generating group documentation... Generating class documentation... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound raptor::bin_validator... Generating docs for compound raptor::build_arguments... Generating docs for compound raptor::cutoff... Generating docs for compound raptor::dna4_traits... Generating docs for compound raptor::emplace_iterator... Generating docs for compound raptor::file_reader... Generating docs for compound raptor::file_reader< file_types::minimiser >... Generating docs for compound raptor::file_reader< file_types::sequence >... Generating docs for compound raptor::hierarchical_interleaved_bloom_filter... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::counting_agent_type... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::membership_agent_type... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::user_bins... Generating docs for compound raptor::index_factory... Generating docs for compound raptor::index_upgrader... Generating docs for compound raptor::output_directory_validator... Generating docs for compound raptor::output_file_validator... Generating docs for compound raptor::partition_config... Generating docs for compound raptor::positive_integer_validator... Generating docs for compound raptor::power_of_two_validator... Generating docs for compound raptor::prepare_arguments... Generating docs for compound raptor::raptor_index... Generating docs for compound raptor::search_arguments... Generating docs for compound raptor::sequence_file_validator... Generating docs for compound raptor::size_validator... Generating docs for compound raptor::sync_out... Generating docs for compound raptor::timer... Generating docs for compound raptor::upgrade_arguments... Generating docs for compound raptor::window... Generating docs for namespace raptor::hibf Generating docs for compound raptor::hibf::build_data... Generating docs for compound raptor::hibf::chopper_pack_record... Generating docs for compound raptor::hibf::node_data... Generating docs for concept raptor::index_structure::compressible_from... Generating docs for concept raptor::index_structure::is_ibf... Generating docs for concept raptor::index_structure::is_hibf... Generating docs for concept raptor::index_structure::is_compressed... Generating docs for compound raptor::logspace::add_fn... Generating docs for compound raptor::threshold::forward_strand_minimiser... Generating docs for compound raptor::threshold::threshold... Generating docs for compound raptor::threshold::threshold_parameters... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 2392/65536 hits=11424 misses=2675 symbol lookup cache used 2956/65536 hits=16171 misses=2956 finished... make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' [100%] Built target doc make[3]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' cd doc_build/latex && /usr/bin/make make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/latex' rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf pdflatex refman This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> makeindex refman.idx This is makeindex, version 2.17 [TeX Live 2023] (kpathsea + Thai support). Scanning input file refman.idx....done (262 entries accepted, 0 rejected). Sorting entries.....done (2170 comparisons). Generating output file refman.ind....done (296 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. pdflatex refman This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> latex_count=8 ; \ while grep -E -s 'Rerun (LaTeX|to get cross-references right|to get bibliographical references right)' refman.log && [ $latex_count -gt 0 ] ;\ do \ echo "Rerunning latex...." ;\ pdflatex refman ;\ latex_count=`expr $latex_count - 1` ;\ done Package longtable Warning: Table widths have changed. Rerun LaTeX. Rerunning latex.... This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> makeindex refman.idx This is makeindex, version 2.17 [TeX Live 2023] (kpathsea + Thai support). Scanning input file refman.idx....done (262 entries accepted, 0 rejected). Sorting entries.....done (2170 comparisons). Generating output file refman.ind....done (296 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. pdflatex refman This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/latex' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_test --arch --builddirectory build_unit cd build_unit && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/DartConfiguration.tcl Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: api/issue_142 1: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/issue_142 1: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api 1: Test timeout computed to be: 10000000 test 2 Start 2: api/memory_usage 2: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/memory_usage 2: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api 2: Test timeout computed to be: 10000000 test 3 Start 3: api/validate_shape 3: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/validate_shape 3: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api 3: Test timeout computed to be: 10000000 test 4 Start 4: cli/argument_parsing/options_test 4: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing/options_test 4: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing 4: Test timeout computed to be: 10000000 test 5 Start 5: cli/build/build_hibf_chopper_test 5: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_hibf_chopper_test 5: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build 5: Test timeout computed to be: 10000000 test 6 Start 6: cli/build/build_hibf_test 6: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_hibf_test 6: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build 6: Test timeout computed to be: 10000000 test 7 Start 7: cli/build/build_ibf_compressed_test 7: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_ibf_compressed_test 7: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build 7: Test timeout computed to be: 10000000 test 8 Start 8: cli/build/build_ibf_partitioned_test 8: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_ibf_partitioned_test 8: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build 8: Test timeout computed to be: 10000000 test 9 Start 9: cli/build/build_ibf_test 9: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_ibf_test 9: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build 9: Test timeout computed to be: 10000000 test 10 Start 10: cli/search/search_hibf_test 10: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_hibf_test 10: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search 10: Test timeout computed to be: 10000000 test 11 Start 11: cli/search/search_hibf_preprocessing_test 11: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_hibf_preprocessing_test 11: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search 11: Test timeout computed to be: 10000000 test 12 Start 12: cli/search/search_ibf_preprocessing_test 12: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_ibf_preprocessing_test 12: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search 12: Test timeout computed to be: 10000000 test 13 Start 13: cli/search/search_ibf_test 13: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_ibf_test 13: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search 13: Test timeout computed to be: 10000000 test 14 Start 14: cli/upgrade/upgrade_test 14: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade/upgrade_test 14: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade 14: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 1 test from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 1 test from issue 1: [ RUN ] issue.142 1: [ OK ] issue.142 (7 ms) 1: [----------] 1 test from issue (7 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 1 test from 1 test suite ran. (7 ms total) 1: [ PASSED ] 1 test. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 8 tests from 1 test suite. 2: [----------] Global test environment set-up. 2: [----------] 8 tests from peak_ram 2: [ RUN ] peak_ram.bytes 2: [ OK ] peak_ram.bytes (0 ms) 2: [ RUN ] peak_ram.KiB 2: [ OK ] peak_ram.KiB (0 ms) 2: [ RUN ] peak_ram.MiB 2: [ OK ] peak_ram.MiB (0 ms) 2: [ RUN ] peak_ram.GiB 2: [ OK ] peak_ram.GiB (0 ms) 2: [ RUN ] peak_ram.TiB 2: [ OK ] peak_ram.TiB (0 ms) 2: [ RUN ] peak_ram.PiB 2: [ OK ] peak_ram.PiB (0 ms) 2: [ RUN ] peak_ram.EiB 2: [ OK ] peak_ram.EiB (0 ms) 2: [ RUN ] peak_ram.via_OS 2: [ OK ] peak_ram.via_OS (0 ms) 2: [----------] 8 tests from peak_ram (0 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 8 tests from 1 test suite ran. (0 ms total) 2: [ PASSED ] 8 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 1 test from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 1 test from validate_shape 3: [ RUN ] validate_shape.set_window_to_kmer 3: [ OK ] validate_shape.set_window_to_kmer (1 ms) 3: [----------] 1 test from validate_shape (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 1 test from 1 test suite ran. (1 ms total) 3: [ PASSED ] 1 test. 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 41 tests from 5 test suites. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from argparse_main 4: [ RUN ] argparse_main.no_options 4: [ OK ] argparse_main.no_options (8 ms) 4: [ RUN ] argparse_main.no_subparser 4: [ OK ] argparse_main.no_subparser (9 ms) 4: [ RUN ] argparse_main.unknown_option 4: [ OK ] argparse_main.unknown_option (11 ms) 4: [----------] 3 tests from argparse_main (29 ms total) 4: 4: [----------] 20 tests from argparse_build 4: [ RUN ] argparse_build.no_options 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 1 test from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 1 test from build_hibf_layout 5: [ RUN ] build_hibf_layout.pipeline 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 26 tests from 2 test suites. 6: [----------] Global test environment set-up. 6: [----------] 2 tests from build_hibf 6: [ RUN ] build_hibf.three_levels 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 25 tests from 2 test suites. 7: [----------] Global test environment set-up. 7: [----------] 1 test from build_ibf_compressed 7: [ RUN ] build_ibf_compressed.wrong_compression 7: [ OK ] build_ibf_compressed.wrong_compression (0 ms) 7: [----------] 1 test from build_ibf_compressed (0 ms total) 7: 7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 25 tests from 2 test suites. 8: [----------] Global test environment set-up. 8: [----------] 1 test from build_ibf_partitioned 8: [ RUN ] build_ibf_partitioned.pipeline_misc 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 25 tests from 2 test suites. 9: [----------] Global test environment set-up. 9: [----------] 1 test from build_ibf 9: [ RUN ] build_ibf.verbose 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 37 tests from 2 test suites. 10: [----------] Global test environment set-up. 10: [----------] 1 test from search_hibf 10: [ RUN ] search_hibf.three_levels 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 49 tests from 2 test suites. 11: [----------] Global test environment set-up. 11: [----------] 1 test from search_hibf_preprocessing 11: [ RUN ] search_hibf_preprocessing.pipeline_with_continuation 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 49 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 1 test from search_ibf_preprocessing 12: [ RUN ] search_ibf_preprocessing.pipeline_compressed_index 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 38 tests from 2 test suites. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from search_ibf 13: [ RUN ] search_ibf.cache_thresholds 1/14 Test #1: api/issue_142 ............................... Passed 0.05 sec 2/14 Test #2: api/memory_usage ............................ Passed 0.05 sec 3/14 Test #3: api/validate_shape .......................... Passed 0.05 sec 4: [ OK ] argparse_build.no_options (10 ms) 4: [ RUN ] argparse_build.input_missing 14: Running main() from ./googletest/src/gtest_main.cc 14: [==========] Running 6 tests from 1 test suite. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from upgrade 14: [ RUN ] upgrade.via_fpr 14: [ OK ] upgrade.via_fpr (12 ms) 14: [ RUN ] upgrade.via_bin_path 10: [ OK ] search_hibf.three_levels (28 ms) 10: [----------] 1 test from search_hibf (28 ms total) 10: 10: [----------] 36 tests from search_hibf_suite/search_hibf 10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error 9: [ OK ] build_ibf.verbose (32 ms) 9: [----------] 1 test from build_ibf (32 ms total) 9: 9: [----------] 24 tests from build_ibf_suite/build_ibf 9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (39 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error 4: [ OK ] argparse_build.input_missing (9 ms) 4: [ RUN ] argparse_build.input_invalid 4: [ OK ] argparse_build.input_invalid (9 ms) 4: [ RUN ] argparse_build.output_missing 10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (18 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error 12: [ OK ] search_ibf_preprocessing.pipeline_compressed_index (42 ms) 12: [----------] 1 test from search_ibf_preprocessing (42 ms total) 12: 12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (23 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial 14: [ OK ] upgrade.via_bin_path (26 ms) 14: [ RUN ] upgrade.via_bin_file 4: [ OK ] argparse_build.output_missing (14 ms) 4: [ RUN ] argparse_build.kmer_window 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (28 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error 6: [ OK ] build_hibf.three_levels (72 ms) 6: [ RUN ] build_hibf.verbose 10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (13 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error 4: [ OK ] argparse_build.kmer_window (10 ms) 4: [ RUN ] argparse_build.kmer_shape 13: [ OK ] search_ibf.cache_thresholds (57 ms) 13: [ RUN ] search_ibf.verbose 9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (15 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel 14: [ OK ] upgrade.via_bin_file (21 ms) 14: [ RUN ] upgrade.compressed 4: [ OK ] argparse_build.kmer_shape (13 ms) 4: [ RUN ] argparse_build.zero_threads 13: [ OK ] search_ibf.verbose (10 ms) 13: [----------] 2 tests from search_ibf (68 ms total) 13: 13: [----------] 36 tests from search_ibf_suite/search_ibf 13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error 5: [ OK ] build_hibf_layout.pipeline (99 ms) 5: [----------] 1 test from build_hibf_layout (99 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 1 test from 1 test suite ran. (99 ms total) 5: [ PASSED ] 1 test. 4/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.10 sec 9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (16 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial 14: [ OK ] upgrade.compressed (12 ms) 14: [ RUN ] upgrade.partitioned_ibf_via_fpr 4: [ OK ] argparse_build.zero_threads (9 ms) 4: [ RUN ] argparse_build.no_bins_in_file 13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (10 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (41 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 8: [ OK ] build_ibf_partitioned.pipeline_misc (98 ms) 8: [----------] 1 test from build_ibf_partitioned (98 ms total) 8: 8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (35 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error 4: [ OK ] argparse_build.no_bins_in_file (8 ms) 4: [ RUN ] argparse_build.corrupted_input 9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (12 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel 13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (13 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error 4: [ OK ] argparse_build.corrupted_input (8 ms) 4: [ RUN ] argparse_build.empty_file_in_bin 10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (51 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error 14: [ OK ] upgrade.partitioned_ibf_via_fpr (25 ms) 14: [ RUN ] upgrade.partitioned_ibf_via_bin_path 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (23 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error 4: [ OK ] argparse_build.empty_file_in_bin (14 ms) 4: [ RUN ] argparse_build.mixed_input 11: [ OK ] search_hibf_preprocessing.pipeline_with_continuation (117 ms) 11: [----------] 1 test from search_hibf_preprocessing (117 ms total) 11: 11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 4: [ OK ] argparse_build.mixed_input (11 ms) 4: [ RUN ] argparse_build.wrong_parts 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (41 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error 6: [ OK ] build_hibf.verbose (72 ms) 6: [----------] 2 tests from build_hibf (145 ms total) 6: 6: [----------] 24 tests from build_hibf_suite/build_hibf 6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel 6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (10 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial 9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (45 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial 13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (40 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error 4: [ OK ] argparse_build.wrong_parts (13 ms) 4: [ RUN ] argparse_build.partitioned_parts 14: [ OK ] upgrade.partitioned_ibf_via_bin_path (39 ms) 14: [----------] 6 tests from upgrade (137 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 6 tests from 1 test suite ran. (137 ms total) 14: [ PASSED ] 6 tests. 4: [ OK ] argparse_build.partitioned_parts (7 ms) 4: [ RUN ] argparse_build.minimiser_and_shape 6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (10 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel 5/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.15 sec 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (39 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 4: [ OK ] argparse_build.minimiser_and_shape (8 ms) 4: [ RUN ] argparse_build.minimiser_and_kmer 6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (9 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial 4: [ OK ] argparse_build.minimiser_and_kmer (7 ms) 4: [ RUN ] argparse_build.minimiser_and_window 10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (59 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (83 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed 4: [ OK ] argparse_build.minimiser_and_window (7 ms) 4: [ RUN ] argparse_build.layout_config_and_options 6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (12 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (47 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error 9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (36 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (66 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error 10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (15 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (35 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error 4: [ OK ] argparse_build.layout_config_and_options (21 ms) 4: [ RUN ] argparse_build.layout_too_small_window 13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (54 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error 6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (22 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial 10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (14 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error 4: [ OK ] argparse_build.layout_too_small_window (11 ms) 4: [ RUN ] argparse_build.layout_config_missing 13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (12 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error 9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (35 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (37 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 4: [ OK ] argparse_build.layout_config_missing (10 ms) 4: [ RUN ] argparse_build.layout_config_missing_preprocessed 6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (27 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel 4: [ OK ] argparse_build.layout_config_missing_preprocessed (9 ms) 4: [----------] 20 tests from argparse_build (217 ms total) 4: 4: [----------] 13 tests from argparse_search 4: [ RUN ] argparse_search.no_options 13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (20 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (51 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (43 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error 4: [ OK ] argparse_search.no_options (11 ms) 4: [ RUN ] argparse_search.ibf_missing 10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (45 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error 6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (21 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial 9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (32 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel 4: [ OK ] argparse_search.ibf_missing (9 ms) 4: [ RUN ] argparse_search.ibf_wrong 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (81 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed 4: [ OK ] argparse_search.ibf_wrong (9 ms) 4: [ RUN ] argparse_search.query_missing 6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (21 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel 4: [ OK ] argparse_search.query_missing (12 ms) 4: [ RUN ] argparse_search.query_wrong 13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (44 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (36 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 4: [ OK ] argparse_search.query_wrong (12 ms) 4: [ RUN ] argparse_search.output_missing 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (71 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (44 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error 9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (44 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (64 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error 4: [ OK ] argparse_search.output_missing (16 ms) 4: [ RUN ] argparse_search.old_index 13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (37 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error 4: [ OK ] argparse_search.old_index (14 ms) 4: [ RUN ] argparse_search.ambiguous_index 10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (23 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error 6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (55 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial 4: [ OK ] argparse_search.ambiguous_index (12 ms) 4: [ RUN ] argparse_search.error_treshold 13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (18 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error 10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (20 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error 4: [ OK ] argparse_search.error_treshold (10 ms) 4: [ RUN ] argparse_search.empty_query 4: [ OK ] argparse_search.empty_query (8 ms) 4: [ RUN ] argparse_search.queries_too_short 13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (15 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (87 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 4: [ OK ] argparse_search.queries_too_short (17 ms) 4: [ RUN ] argparse_search.queries_have_variance 9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (71 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (69 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (87 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (127 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed 6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (60 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel 10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (50 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error 13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (47 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error 4: [ OK ] argparse_search.queries_have_variance (40 ms) 4: [ RUN ] argparse_search.queries_unsupported_length 9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (44 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (42 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error 4: [ OK ] argparse_search.queries_unsupported_length (12 ms) 4: [----------] 13 tests from argparse_search (187 ms total) 4: 4: [----------] 3 tests from argparse_upgrade 4: [ RUN ] argparse_upgrade.exclusive_options 4: [ OK ] argparse_upgrade.exclusive_options (11 ms) 4: [ RUN ] argparse_upgrade.ambiguous_index 4: [ OK ] argparse_upgrade.ambiguous_index (12 ms) 4: [ RUN ] argparse_upgrade.unsupported_index 10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (53 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error 13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (47 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error 6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (58 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial 4: [ OK ] argparse_upgrade.unsupported_index (7 ms) 4: [----------] 3 tests from argparse_upgrade (31 ms total) 4: 4: [----------] 2 tests from argparse_prepare 4: [ RUN ] argparse_prepare.no_options 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (13 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error 9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (46 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (79 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (94 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error 4: [ OK ] argparse_prepare.no_options (10 ms) 4: [ RUN ] argparse_prepare.cutoffs 13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (19 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (53 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error 4: [ OK ] argparse_prepare.cutoffs (9 ms) 4: [----------] 2 tests from argparse_prepare (20 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 41 tests from 5 test suites ran. (487 ms total) 4: [ PASSED ] 41 tests. 9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (14 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (15 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error 6/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.49 sec 13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (16 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (16 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (18 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel 13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (13 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error 6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (55 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (15 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (19 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial 13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (15 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (12 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (14 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (15 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (59 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (10 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel 13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (15 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (140 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (12 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (77 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (75 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error 13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (13 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (14 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (14 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (11 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel 13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (12 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (29 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (12 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error 13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (11 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (21 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (17 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error 13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (13 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (52 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (27 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (50 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (12 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (17 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (15 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error 13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (13 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (12 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (71 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (17 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial 9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (29 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error (15 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error 13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (16 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (19 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (47 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (13 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (12 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (33 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel 10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (14 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (20 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (49 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (83 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (41 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial 9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (38 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (57 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (46 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (49 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (47 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (49 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (204 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed 10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (44 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (54 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (90 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (49 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (15 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (64 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (36 ms) 6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (53 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (13 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (18 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (35 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial 13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (12 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (45 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (55 ms) 6: [----------] 24 tests from build_hibf_suite/build_hibf (675 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 26 tests from 2 test suites ran. (821 ms total) 6: [ PASSED ] 26 tests. 7/14 Test #6: cli/build/build_hibf_test ................... Passed 0.83 sec 10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (47 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (86 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error 9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (63 ms) 9: [----------] 24 tests from build_ibf_suite/build_ibf (806 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 25 tests from 2 test suites ran. (839 ms total) 9: [ PASSED ] 25 tests. 8/14 Test #9: cli/build/build_ibf_test .................... Passed 0.84 sec 13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (55 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (91 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (45 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (13 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (46 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (16 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (11 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (98 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (12 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (79 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (83 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (41 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (202 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed 13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (48 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (51 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error 10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (40 ms) 10: [----------] 36 tests from search_hibf_suite/search_hibf (940 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 37 tests from 2 test suites ran. (969 ms total) 10: [ PASSED ] 37 tests. 9/14 Test #10: cli/search/search_hibf_test ................. Passed 0.98 sec 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (91 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error 13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (41 ms) 13: [----------] 36 tests from search_ibf_suite/search_ibf (920 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 38 tests from 2 test suites ran. (988 ms total) 13: [ PASSED ] 38 tests. 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (72 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error 10/14 Test #13: cli/search/search_ibf_test .................. Passed 0.99 sec 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (85 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (49 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (83 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (60 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (81 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (68 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (51 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (56 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (68 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (51 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (57 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (116 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (81 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (62 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (58 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (79 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (57 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (102 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (64 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (183 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (164 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (235 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (246 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (82 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (105 ms) 7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed (1594 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 25 tests from 2 test suites ran. (1595 ms total) 7: [ PASSED ] 25 tests. 11/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 1.60 sec 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (72 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (84 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (76 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (173 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (83 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (89 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (43 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (93 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (112 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (36 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (32 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (39 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (40 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (95 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (39 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (46 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (30 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (64 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (62 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (144 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (82 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (60 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (63 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (64 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (114 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (77 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (58 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (47 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (63 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (41 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (49 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (43 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (186 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (56 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (41 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (55 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (75 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (81 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (73 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (196 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (84 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (65 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (61 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (107 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (102 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (62 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (103 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (72 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (67 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (55 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (68 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (57 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (126 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (64 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (54 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (54 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (77 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (122 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (74 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (85 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (78 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (92 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (184 ms) 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed 11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (82 ms) 11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (3136 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 49 tests from 2 test suites ran. (3253 ms total) 11: [ PASSED ] 49 tests. 12/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 3.26 sec 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (81 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (84 ms) 12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (3306 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 49 tests from 2 test suites ran. (3348 ms total) 12: [ PASSED ] 49 tests. 13/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 3.36 sec 8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (190 ms) 8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (3316 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 25 tests from 2 test suites ran. (3415 ms total) 8: [ PASSED ] 25 tests. 14/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 3.42 sec 100% tests passed, 0 tests failed out of 14 Total Test time (real) = 3.44 sec make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' #dh_auto_test --arch --builddirectory build_performance #dh_auto_test --arch --builddirectory build_header dh_auto_test --arch --builddirectory build_snippet cd build_snippet && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/DartConfiguration.tcl Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: snippet/hibf/bin_indices_of_ibf_snippet 1: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet 1: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet 1: Environment variables: 1: SHARG_NO_VERSION_CHECK=0 1: Test timeout computed to be: 10000000 test 2 Start 2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output 2: Test command: /usr/bin/cmake "-DTARGET_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet" "-DSOURCE_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.cpp" "-P" "/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/compare_snippet_output.cmake" 2: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet 2: Environment variables: 2: SHARG_NO_VERSION_CHECK=0 2: Test timeout computed to be: 10000000 test 3 Start 3: snippet/hibf/filename_of_user_bin_snippet 3: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet 3: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet 3: Environment variables: 3: SHARG_NO_VERSION_CHECK=0 3: Test timeout computed to be: 10000000 test 4 Start 4: snippet/hibf/filename_of_user_bin_snippet_cmp_output 4: Test command: /usr/bin/cmake "-DTARGET_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet" "-DSOURCE_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp" "-P" "/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/compare_snippet_output.cmake" 4: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet 4: Environment variables: 4: SHARG_NO_VERSION_CHECK=0 4: Test timeout computed to be: 10000000 test 5 Start 5: snippet/snippet_main_snippet 5: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet 5: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet 5: Environment variables: 5: SHARG_NO_VERSION_CHECK=0 5: Test timeout computed to be: 10000000 test 6 Start 6: snippet/snippet_main_snippet_cmp_output 6: Test command: /usr/bin/cmake "-DTARGET_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet" "-DSOURCE_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp" "-P" "/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/compare_snippet_output.cmake" 6: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet 6: Environment variables: 6: SHARG_NO_VERSION_CHECK=0 6: Test timeout computed to be: 10000000 1: User bin indices of 1-level-IBF: [1,2,3] 1: User bin indices of 2-level-IBF: [2,3] 3: Filename of user bin 0: path/example1.fasta 3: Filename of user bin 1: path/example2.fasta 3: Filename of user bin 2: path/example2.fasta 1/6 Test #1: snippet/hibf/bin_indices_of_ibf_snippet ................ Passed 0.01 sec 2/6 Test #3: snippet/hibf/filename_of_user_bin_snippet .............. Passed 0.01 sec 3/6 Test #5: snippet/snippet_main_snippet ........................... Passed 0.01 sec 4: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet 4: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp 4: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet.out 4: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.out 4: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet.err 4: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.err 4: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.out 6: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet 6: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp 6: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet.out 6: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.out 6: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet.err 6: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.err 2: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet 2: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.cpp 2: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet.out 2: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.out 2: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet.err 2: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.err 6: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.out 6: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.err 4/6 Test #6: snippet/snippet_main_snippet_cmp_output ................ Passed 0.03 sec 2: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.out 5/6 Test #4: snippet/hibf/filename_of_user_bin_snippet_cmp_output ... Passed 0.05 sec 6/6 Test #2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output ..... Passed 0.07 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 0.07 sec make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_test --builddirectory doc_build cd doc_build && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/DartConfiguration.tcl Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: doc_no_warnings_test 1: Test command: /usr/bin/bash "-c" " /usr/bin/doxygen > doxygen.cout 2> doxygen.cerr; cat "doxygen.cerr"; test ! -s "doxygen.cerr"" 1: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build 1: Test timeout computed to be: 10000000 1/1 Test #1: doc_no_warnings_test ............. Passed 1.74 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 1.74 sec make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_install --indep --builddir doc_build cd doc_build && make -j20 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation -B/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_install -Nseqan-raptor-doc cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds -B/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan-raptor-3.0.1+ds/debian/tmp/usr/bin/raptor make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_missing --list-missing make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-raptor' in '../seqan-raptor_3.0.1+ds-5_amd64.deb'. dpkg-deb: building package 'seqan-raptor-dbgsym' in '../seqan-raptor-dbgsym_3.0.1+ds-5_amd64.deb'. dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_3.0.1+ds-5_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-raptor_3.0.1+ds-5_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-raptor_3.0.1+ds-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3418723 and its subdirectories I: Current time: Sun May 26 01:10:47 -12 2024 I: pbuilder-time-stamp: 1716729047 Sun May 26 13:10:49 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun May 26 13:10:49 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun May 26 13:19:53 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun May 26 13:19:53 UTC 2024 I: seqan-raptor_3.0.1+ds-5_amd64.changes: Format: 1.8 Date: Wed, 06 Sep 2023 15:04:40 +0200 Source: seqan-raptor Binary: seqan-raptor seqan-raptor-dbgsym seqan-raptor-doc Architecture: amd64 all Version: 3.0.1+ds-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: seqan-raptor - pre-filter for querying very large collections of nucleotide sequ seqan-raptor-doc - HTML & PDF documentation for seqan-raptor and its APIs Changes: seqan-raptor (3.0.1+ds-5) unstable; urgency=medium . * d/tests/run-unit-test: also use -DRAPTOR_NATIVE_BUILD=OFF here Checksums-Sha1: 9f23bfe68699601970e9f219a77a8405e3f95a53 23233220 seqan-raptor-dbgsym_3.0.1+ds-5_amd64.deb 19a041e3e0294379b4189e9aeb988655f08d77dd 1228836 seqan-raptor-doc_3.0.1+ds-5_all.deb 9ea087b39d90302d0dc4d7c4bc6489243c8c65a3 10172 seqan-raptor_3.0.1+ds-5_amd64.buildinfo 67bdf57ade308b1f9f35fae74b9ef5c0be663667 661724 seqan-raptor_3.0.1+ds-5_amd64.deb Checksums-Sha256: cb82cc3dc1910fa52cd57f8a2e2941220158e21f31c1eba5c657d83ccc3dfebc 23233220 seqan-raptor-dbgsym_3.0.1+ds-5_amd64.deb b1b6ea1962b29bf8d88527854b1affde6005e947b68ce5818d19fef70e95a7bf 1228836 seqan-raptor-doc_3.0.1+ds-5_all.deb f9a66129a82d6fab660741a2da97c59ccb2d64220ac51c752b26a86b41ba192e 10172 seqan-raptor_3.0.1+ds-5_amd64.buildinfo 2da08a8d23e6cbead452cb1d4ec41fc538a9cc9780a77903222feda098d38767 661724 seqan-raptor_3.0.1+ds-5_amd64.deb Files: eb7168d8f4d458fc89e142d2c0a96ffe 23233220 debug optional seqan-raptor-dbgsym_3.0.1+ds-5_amd64.deb f4ef7a68f6ade994b5c15a52a5ea51ab 1228836 doc optional seqan-raptor-doc_3.0.1+ds-5_all.deb f71bf94417797a9a4511fcfa1b57f599 10172 science optional seqan-raptor_3.0.1+ds-5_amd64.buildinfo 2b01cea7ba6b3d8aaea42ce9b3f5b730 661724 science optional seqan-raptor_3.0.1+ds-5_amd64.deb Sun May 26 13:19:55 UTC 2024 I: diffoscope 268 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_27-22301.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hXxTIjbW/seqan-raptor_3.0.1+ds-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hXxTIjbW/seqan-raptor_3.0.1+ds-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hXxTIjbW/seqan-raptor_3.0.1+ds-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hXxTIjbW/b1/seqan-raptor_3.0.1+ds-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.hXxTIjbW/b2/seqan-raptor_3.0.1+ds-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.657s) 0.657s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.281s) 0.281s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.049s CPU time consumed: 1.050s Sun May 26 13:19:56 UTC 2024 I: diffoscope 268 found no differences in the changes files, and a .buildinfo file also exists. Sun May 26 13:19:56 UTC 2024 I: seqan-raptor from unstable built successfully and reproducibly on amd64. Sun May 26 13:19:58 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 26 13:19:58 UTC 2024 I: Submitting 12K b1/seqan-raptor_3.0.1+ds-5_amd64.buildinfo.asc Sun May 26 13:19:58 UTC 2024 I: Submitting 12K b2/seqan-raptor_3.0.1+ds-5_amd64.buildinfo.asc Sun May 26 13:19:59 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 26 13:19:59 UTC 2024 I: Done submitting .buildinfo files. Sun May 26 13:19:59 UTC 2024 I: Removing signed seqan-raptor_3.0.1+ds-5_amd64.buildinfo.asc files: removed './b1/seqan-raptor_3.0.1+ds-5_amd64.buildinfo.asc' removed './b2/seqan-raptor_3.0.1+ds-5_amd64.buildinfo.asc'