Sat May 18 05:26:49 UTC 2024 I: starting to build q2-dada2/unstable/arm64 on jenkins on '2024-05-18 05:26' Sat May 18 05:26:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/11916/console.log Sat May 18 05:26:49 UTC 2024 I: Downloading source for unstable/q2-dada2=2024.2.0-1 --2024-05-18 05:26:49-- http://deb.debian.org/debian/pool/main/q/q2-dada2/q2-dada2_2024.2.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2107 (2.1K) [text/prs.lines.tag] Saving to: ‘q2-dada2_2024.2.0-1.dsc’ 0K .. 100% 282M=0s 2024-05-18 05:26:49 (282 MB/s) - ‘q2-dada2_2024.2.0-1.dsc’ saved [2107/2107] Sat May 18 05:26:49 UTC 2024 I: q2-dada2_2024.2.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: q2-dada2 Binary: q2-dada2 Architecture: any Version: 2024.2.0-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-dada2 Vcs-Git: https://salsa.debian.org/med-team/q2-dada2.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, qiime (>= 2024.2), r-bioc-dada2 Package-List: q2-dada2 deb science optional arch=any Checksums-Sha1: 136ab24d1eff6a06344ba961cb538ed03f2c0514 2236525 q2-dada2_2024.2.0.orig.tar.gz 7f3ecce5f1bb13c74f49d7d453b107623d80a494 6088 q2-dada2_2024.2.0-1.debian.tar.xz Checksums-Sha256: 0fd2de9ecbd0417ad848b829e8c7de55f6f254bbce3dd4a827e559088d9a4a45 2236525 q2-dada2_2024.2.0.orig.tar.gz 9f2316ef83331eff2616cea7d5e0ac1209a25c4e4002dcd331eec101232be49d 6088 q2-dada2_2024.2.0-1.debian.tar.xz Files: b0fd05a4daa1e86869bd90cce782829f 2236525 q2-dada2_2024.2.0.orig.tar.gz 99bba4c4103da2e09dd5f8994e36f250 6088 q2-dada2_2024.2.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXSBrMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGLzQ/+NyX0yqLepr25CamhgBGNUtSm6V+J6WPe 7F/gYSSpvalW5CE65P9JMrhm5apZEQO6UHGC/lqu8zSMTUZzScY+H9liFRJSIXdj bAGz3lhs5FCs9DxxsxTIJjDe1ILY2uvtpoh0RKaMu+P1ch7itUgfat6ksPGXqh5U GZaowL0ycvIg2WdletDIChlBPTw8Gp7JgmAcDhWcZ/SP3i9YTrLInB+39P6p+JDh YRF7e132CGRPcEREZiKutSAbB2LhWiPsdD8kEoqVbEuqR2KTG+/SHidGMFPOIU7t r0iqUpgyFuciZs6Y+y6m1PVZAmjNqxTChZNuI68ycRn93p9KmLna0mB+26htuEND H6ZueoR2vTlKvuJAUPWJA9E4kWj9NGuZU2FXAmzAtAvv5OnIot+A1q5EDVfVLTp4 LtXjnGf4CWa3zwKtb40MbaqyfBI2r6X2kGCqibVYFqorxHesg8KhvH/cx1OAyu7E y/IsBXCn06IKHwavoz9sLLFXXfPG/1F4sE3C5ObwLIl0F7q8wjzNNcqzm/KaVmvC kqUbI8Mo6KnOvWXB80cwAoFNz+gXPqzJl1lE/frVXbMopk2vFFI3/HDF2cWsVhRV QGWYI0Ax2lpNGbhU7rw93tV7+/TJ0Z84oatpxY/GpGpeSJAec/n79qiXi00M5Y1H QL92qfYwe90= =rUsV -----END PGP SIGNATURE----- Sat May 18 05:26:49 UTC 2024 I: Checking whether the package is not for us Sat May 18 05:26:49 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat May 18 05:26:49 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat May 18 05:27:09 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 19 23:49:52 -12 2025 I: pbuilder-time-stamp: 1750420192 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [q2-dada2_2024.2.0-1.dsc] I: copying [./q2-dada2_2024.2.0.orig.tar.gz] I: copying [./q2-dada2_2024.2.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 18 13:31:31 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-dada2_2024.2.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2-dada2 in q2-dada2-2024.2.0 dpkg-source: info: unpacking q2-dada2_2024.2.0.orig.tar.gz dpkg-source: info: unpacking q2-dada2_2024.2.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3966190/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8ce0ad6833a84cd28eba81fd2cfff48b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3966190' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7KTFCAmv/pbuilderrc_FL5q --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7KTFCAmv/b1 --logfile b1/build.log q2-dada2_2024.2.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 19 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3966190/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, qiime (>= 2024.2), r-bioc-dada2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19764 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2024.2); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dada2; however: Package r-bioc-dada2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcom-err2{a} libdata-optlist-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libparams-util-perl{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsodium23{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-appdirs{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-distutils{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-itsdangerous{a} python3-jinja2{a} python3-jwt{a} python3-lib2to3{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-nacl{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-paramiko{a} python3-parsl{a} python3-pkg-resources{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zmq{a} python3.11{a} python3.11-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-invoke python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 68.8 MB of archives. After unpacking 348 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-dada2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcom-err2{a} libdata-optlist-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libparams-util-perl{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsodium23{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-appdirs{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-distutils{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-itsdangerous{a} python3-jinja2{a} python3-jwt{a} python3-lib2to3{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-nacl{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-paramiko{a} python3-parsl{a} python3-pkg-resources{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zmq{a} python3.11{a} python3.11-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-invoke python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 68.8 MB of archives. After unpacking 348 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3966190 and its subdirectories Sat May 18 05:27:10 UTC 2024 W: No second build log, what happened? Sat May 18 05:27:10 UTC 2024 W: Downloading the build dependencies failed Sat May 18 05:27:10 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat May 18 05:27:10 UTC 2024 W: Network problems are automatically rescheduled after some hours.