Mon Apr 22 15:42:05 UTC 2024 I: starting to build glam2/unstable/armhf on jenkins on '2024-04-22 15:41' Mon Apr 22 15:42:05 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_3/2986/console.log Mon Apr 22 15:42:05 UTC 2024 I: Downloading source for unstable/glam2=1064-9 --2024-04-22 15:42:05-- http://deb.debian.org/debian/pool/main/g/glam2/glam2_1064-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2006 (2.0K) [text/prs.lines.tag] Saving to: ‘glam2_1064-9.dsc’ 0K . 100% 269M=0s 2024-04-22 15:42:05 (269 MB/s) - ‘glam2_1064-9.dsc’ saved [2006/2006] Mon Apr 22 15:42:05 UTC 2024 I: glam2_1064-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: glam2 Binary: glam2 Architecture: any Version: 1064-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://acb.qfab.org/acb/glam2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/glam2 Vcs-Git: https://salsa.debian.org/med-team/glam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libfftw3-dev Package-List: glam2 deb science optional arch=any Checksums-Sha1: 655dec5140c3293953c7160b41cdbd073c00e2ca 237926 glam2_1064.orig.tar.gz 0fce9d72626f96274179075b9e031eb65b9fac63 12552 glam2_1064-9.debian.tar.xz Checksums-Sha256: 7cdcb290792e79d984d1244940cd2f4d9f92182e4611e6c441d3c273d1f30c40 237926 glam2_1064.orig.tar.gz 15875a4056fba4c77f9fa270a61a82597b3ce834ede8204c6713cd27f7fe8901 12552 glam2_1064-9.debian.tar.xz Files: 84ec46d59e299c4cd70cd0b900696c30 237926 glam2_1064.orig.tar.gz 6c634aa15b4ca66cccbf9e9732e301df 12552 glam2_1064-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/OoZARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGi5A/9FCy+RUjQDzUSyPTfZGNGGV1WqBH37SyV ijySW7fqy0W1GsnsnZgkrUIuYnDwLAk+cqQGn/XEeLU3pB/iiXzKhaVLD0Jx4i6O Cq5auWDRomPA89+o5rxwPnAbS9En6AylMPX2Gk8+P1JFgb4CXrV5JxUj3KkJg52c Cxvd2Rmo95S3bYnE2N5qzoDmwS4fkaSZQYRRQmo057Y3t1c7fWb/ML2O8rsuZxrC a6PrAxPYxdAxzVf8Zj1MY8cEV0EL9v9pGGUjhJhVPUdwFA5bnkw9BumbU0XUW37S QBJn7rmMxm2J6Zkjc2rgDDy7EZUGbPSetnN80r6ip5bNfZV6CbQVvbZR9NvjkYG2 fuijOanAXCHou2NAYSZb7e69fR4G5k89nzkWMy9nUknegxZdnOQCt2HHaOeKCyt5 vCjldkvDL7yKwxMNKzf3/nMt6xEObXSCGtxw1dqFPnM431QgMRAd7RkIOQ2Aij+M eruekxn9kRY04xSpBtMT9Hd+dKMfK3RU7y3AUiUMWxey3KW7GZ/kpozS5+QiDapX gcJFDBrGT6MtA0o3dUMeNU9/0QQ9MMMRSfMk8GnOqROaQa+LmM4uzGPjZO+llnex lO3oglgrT7pXfyDMNI6q4F6jdN3//U9y4bl4gPig+hQsGBvSVv5GSXVrYtYBprxu Z07O3yVrztc= =lPiM -----END PGP SIGNATURE----- Mon Apr 22 15:42:05 UTC 2024 I: Checking whether the package is not for us Mon Apr 22 15:42:05 UTC 2024 I: Starting 1st build on remote node ff4a-armhf-rb.debian.net. Mon Apr 22 15:42:05 UTC 2024 I: Preparing to do remote build '1' on ff4a-armhf-rb.debian.net. Mon Apr 22 15:44:38 UTC 2024 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 22 03:42:12 -12 2024 I: pbuilder-time-stamp: 1713800532 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [glam2_1064-9.dsc] I: copying [./glam2_1064.orig.tar.gz] I: copying [./glam2_1064-9.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 7 21:41:36 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./glam2_1064-9.dsc: no acceptable signature found dpkg-source: info: extracting glam2 in glam2-1064 dpkg-source: info: unpacking glam2_1064.orig.tar.gz dpkg-source: info: unpacking glam2_1064-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying change-fixed-compilers.patch dpkg-source: info: applying fix_html_syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1463/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='94777ee5fc834910b9a41be5369756f9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1463' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0AsiJ13T/pbuilderrc_y9kB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0AsiJ13T/b1 --logfile b1/build.log glam2_1064-9.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff4a 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 21 07:13 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1463/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libfftw3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19442 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After unpacking 74.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3+b1 [1091 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40-6 [85.2 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libfftw3-double3 armhf 3.3.10-1+b2 [330 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libfftw3-single3 armhf 3.3.10-1+b2 [521 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libfftw3-bin armhf 3.3.10-1+b2 [41.9 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libfftw3-dev armhf 3.3.10-1+b2 [834 kB] Fetched 20.1 MB in 2s (9441 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19442 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3+b1_armhf.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-6_armhf.deb ... Unpacking bsdextrautils (2.40-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libfftw3-double3:armhf. Preparing to unpack .../30-libfftw3-double3_3.3.10-1+b2_armhf.deb ... Unpacking libfftw3-double3:armhf (3.3.10-1+b2) ... Selecting previously unselected package libfftw3-single3:armhf. Preparing to unpack .../31-libfftw3-single3_3.3.10-1+b2_armhf.deb ... Unpacking libfftw3-single3:armhf (3.3.10-1+b2) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../32-libfftw3-bin_3.3.10-1+b2_armhf.deb ... Unpacking libfftw3-bin (3.3.10-1+b2) ... Selecting previously unselected package libfftw3-dev:armhf. Preparing to unpack .../33-libfftw3-dev_3.3.10-1+b2_armhf.deb ... Unpacking libfftw3-dev:armhf (3.3.10-1+b2) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libfftw3-single3:armhf (3.3.10-1+b2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.40-6) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up libfftw3-double3:armhf (3.3.10-1+b2) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libfftw3-dev:armhf (3.3.10-1+b2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/glam2-1064/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../glam2_1064-9_source.changes dpkg-buildpackage: info: source package glam2 dpkg-buildpackage: info: source version 1064-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src dh_autoreconf_clean -O--sourcedirectory=src debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_clean rm -f purge/*.o purge/purge src/*.o src/glam2 src/glam2mask scr/glam2format src/glam2scan src/glam2fft src/glam2format make[1]: Leaving directory '/build/reproducible-path/glam2-1064' debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_auto_build cd src && make -j3 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/glam2-1064/src' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -o glam2 alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -o glam2scan alphabet.c scan_args.c dirichlet.c dna_prior.c fasta.c scan.c scan_init.c scan_output.c recode3_20comp.c util.c heap.c motif.c alignment.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -o glam2format glam2format.c alignment.c fasta.c util.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -o glam2mask glam2mask.c alignment.c fasta.c util.c -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/glam2-1064/src' dh_auto_build -B src -- glam2fft cd src && make -j3 "INSTALL=install --strip-program=true" glam2fft make[2]: Entering directory '/build/reproducible-path/glam2-1064/src' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -DFFT -o glam2fft alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c convolve.c -lm -lfftw3 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/glam2-1064/src' dh_auto_build -B purge cd purge && make -j3 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/glam2-1064/purge' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -O3 -o purge *.c -lm -Wl,-z,relro -Wl,-z,now block.c: In function 'IntersectBlockL': block.c:314:25: warning: operation on '*(B2->b + (sizetype)e)' may be undefined [-Wsequence-point] 314 | if((B2->b[e] = B1->b[e]) & B2->b[e]) {B2->list[k++]=e; } | ~~~~~~~~~~^~~~~~~~~~~ gblast.c: In function 'MakeGBlast': gblast.c:110:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 110 | for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); | ^~~ gblast.c:110:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 110 | for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); | ^~~~ gblast.c:14:21: warning: variable 'time1' set but not used [-Wunused-but-set-variable] 14 | long time1; | ^~~~~ gblast.c:11:19: warning: variable 'R' set but not used [-Wunused-but-set-variable] 11 | int **R; | ^ gblast.c: In function 'MatcherGBlast': gblast.c:222:49: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'time_t' {aka 'long long int'} [-Wformat=] 222 | fprintf(fptr,"\tmatcher time: %ld seconds\n", | ~~^ | | | long int | %lld 223 | time(NULL)-time1); | ~~~~~~~~~~~~~~~~ | | | time_t {aka long long int} sequence.c: In function 'RandomizeSeq': sequence.c:235:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 235 | if(E->info!=NULL)free(E->info); E->info = NULL; return E; | ^~ sequence.c:235:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 235 | if(E->info!=NULL)free(E->info); E->info = NULL; return E; | ^ sequence.c: In function 'ShuffleSeq': sequence.c:290:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 290 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^~ sequence.c:290:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 290 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^ sequence.c: In function 'ShuffleSeq2': sequence.c:309:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 309 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^~ sequence.c:309:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^ sequence.c: In function 'CenterSeqHSP': sequence.c:429:27: warning: variable 'score' set but not used [-Wunused-but-set-variable] 429 | long v,n,n1,n2,score=0,e,start,end; | ^~~~~ make[2]: Leaving directory '/build/reproducible-path/glam2-1064/purge' make[1]: Leaving directory '/build/reproducible-path/glam2-1064' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/glam2/ -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_install # purge is renamed glam2-purge to avoid namespace problems. mv /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/purge /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/glam2-purge # FFT is enabled by default in Debian. mv /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/glam2fft /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/glam2 make[1]: Leaving directory '/build/reproducible-path/glam2-1064' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installexamples -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/glam2-1064' dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'glam2' in '../glam2_1064-9_armhf.deb'. dpkg-deb: building package 'glam2-dbgsym' in '../glam2-dbgsym_1064-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../glam2_1064-9_armhf.buildinfo dpkg-genchanges --build=binary -O../glam2_1064-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1463 and its subdirectories I: Current time: Mon Apr 22 03:44:22 -12 2024 I: pbuilder-time-stamp: 1713800662 Mon Apr 22 15:44:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Mon Apr 22 15:44:42 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Mon Apr 22 15:46:48 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Mon Apr 22 15:46:50 UTC 2024 I: glam2_1064-9_armhf.changes: Format: 1.8 Date: Mon, 07 Dec 2020 22:07:41 +0100 Source: glam2 Binary: glam2 glam2-dbgsym Architecture: armhf Version: 1064-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: glam2 - gapped protein motifs from unaligned sequences Changes: glam2 (1064-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * rename debian/NEWS.Debian debian/NEWS (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set field Upstream-Name in debian/copyright. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: ac40150f04f69671de60772b81c05448385f729a 253140 glam2-dbgsym_1064-9_armhf.deb 14b6734cf557309a41c14a8368c0535f960612fb 5080 glam2_1064-9_armhf.buildinfo b1c3306e8d9a503f663b3f87406fcde87bb12ac3 218852 glam2_1064-9_armhf.deb Checksums-Sha256: a0bad2279b85fa85ed358c49fd56ef20db1fe755ffc0654fa9ea14394360a777 253140 glam2-dbgsym_1064-9_armhf.deb ad9a9e4ef3e42c56fe66e409adfec5e723fdc489901a5c1d57675eb57dc3fc3f 5080 glam2_1064-9_armhf.buildinfo 9bdb725589fdbed5070a48a7f81338e0bda26fcfe8c01f96699687db022a90a1 218852 glam2_1064-9_armhf.deb Files: c9ef751d36fe345eb2737f07d4b69aaa 253140 debug optional glam2-dbgsym_1064-9_armhf.deb 75dd20a2d3acc229e02486bc5016b306 5080 science optional glam2_1064-9_armhf.buildinfo 85fe9ad0a670cd4082e2056d4360e30b 218852 science optional glam2_1064-9_armhf.deb Mon Apr 22 15:46:51 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_3-2986.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0AsiJ13T/glam2_1064-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0AsiJ13T/glam2_1064-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0AsiJ13T/glam2_1064-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0AsiJ13T/b1/glam2_1064-9_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.0AsiJ13T/b2/glam2_1064-9_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.382s) 0.382s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 722ms CPU time consumed: 719ms Mon Apr 22 15:46:52 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 22 15:46:52 UTC 2024 I: glam2 from unstable built successfully and reproducibly on armhf. Mon Apr 22 15:46:54 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 22 15:46:54 UTC 2024 I: Submitting 8.0K b1/glam2_1064-9_armhf.buildinfo.asc Mon Apr 22 15:46:55 UTC 2024 I: Submitting 8.0K b2/glam2_1064-9_armhf.buildinfo.asc Mon Apr 22 15:46:56 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 22 15:46:56 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 22 15:46:56 UTC 2024 I: Removing signed glam2_1064-9_armhf.buildinfo.asc files: removed './b1/glam2_1064-9_armhf.buildinfo.asc' removed './b2/glam2_1064-9_armhf.buildinfo.asc'